Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46379.t1 | KEH31582.1 | 92.4 | 276 | 17 | 3 | 68 | 340 | 12 | 286 | 2.00E-113 | 419.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46379.t1 | Q9FHE4 | 34.5 | 203 | 127 | 2 | 140 | 340 | 95 | 293 | 8.4e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46379.t1 | A0A072UR88 | 92.4 | 276 | 17 | 3 | 68 | 340 | 57 | 331 | 1.4e-113 | 419.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051552 | MS.gene46379 | 0.81601 | 6.89E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene46379 | -0.819492 | 1.13E-52 | -1.69E-46 |
| MS.gene051973 | MS.gene46379 | 0.82427 | 8.84E-54 | -1.69E-46 |
| MS.gene052015 | MS.gene46379 | 0.821002 | 5.09E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene46379 | -0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene46379 | -0.809332 | 1.99E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene46379 | -0.819912 | 9.05E-53 | -1.69E-46 |
| MS.gene054343 | MS.gene46379 | -0.811272 | 7.61E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene46379 | -0.830731 | 2.49E-55 | -1.69E-46 |
| MS.gene05470 | MS.gene46379 | -0.815474 | 9.07E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene46379 | 0.811078 | 8.38E-51 | -1.69E-46 |
| MS.gene055159 | MS.gene46379 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene055370 | MS.gene46379 | -0.812322 | 4.49E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene46379 | -0.810435 | 1.15E-50 | -1.69E-46 |
| MS.gene056988 | MS.gene46379 | 0.814624 | 1.40E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene46379 | -0.847066 | 1.46E-59 | -1.69E-46 |
| MS.gene058418 | MS.gene46379 | 0.82402 | 1.01E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene46379 | -0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene46379 | -0.824267 | 8.86E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene46379 | -0.819262 | 1.27E-52 | -1.69E-46 |
| MS.gene059103 | MS.gene46379 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene46379 | -0.857118 | 2.03E-62 | -1.69E-46 |
| MS.gene059303 | MS.gene46379 | -0.805269 | 1.45E-49 | -1.69E-46 |
| MS.gene059480 | MS.gene46379 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene46379 | -0.846283 | 2.39E-59 | -1.69E-46 |
| MS.gene05960 | MS.gene46379 | 0.818516 | 1.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21505 | MS.gene46379 | PPI |
| MS.gene015349 | MS.gene46379 | PPI |
| MS.gene09692 | MS.gene46379 | PPI |
| MS.gene54205 | MS.gene46379 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46379.t1 | MTR_4g099060 | 90.145 | 345 | 15 | 6 | 1 | 340 | 1 | 331 | 0.0 | 511 |
| MS.gene46379.t1 | MTR_4g099060 | 92.908 | 282 | 12 | 4 | 64 | 340 | 8 | 286 | 1.59e-159 | 447 |
| MS.gene46379.t1 | MTR_5g013690 | 55.833 | 360 | 114 | 10 | 1 | 340 | 1 | 335 | 2.80e-112 | 330 |
| MS.gene46379.t1 | MTR_5g013690 | 58.929 | 280 | 90 | 5 | 75 | 340 | 4 | 272 | 2.04e-97 | 290 |
| MS.gene46379.t1 | MTR_1g019250 | 32.645 | 242 | 141 | 4 | 101 | 339 | 118 | 340 | 5.00e-32 | 122 |
| MS.gene46379.t1 | MTR_4g083540 | 32.075 | 212 | 136 | 3 | 131 | 340 | 88 | 293 | 2.52e-30 | 117 |
| MS.gene46379.t1 | MTR_2g069350 | 31.349 | 252 | 133 | 6 | 126 | 340 | 118 | 366 | 1.09e-29 | 117 |
| MS.gene46379.t1 | MTR_3g117970 | 34.225 | 187 | 100 | 5 | 153 | 339 | 32 | 195 | 3.58e-25 | 100 |
| MS.gene46379.t1 | MTR_4g036485 | 28.205 | 195 | 128 | 2 | 144 | 338 | 28 | 210 | 3.89e-25 | 101 |
| MS.gene46379.t1 | MTR_2g028830 | 30.348 | 201 | 128 | 3 | 147 | 340 | 124 | 319 | 1.32e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46379.t1 | AT1G32740 | 42.458 | 358 | 140 | 12 | 1 | 339 | 1 | 311 | 1.29e-70 | 223 |
| MS.gene46379.t1 | AT5G47050 | 43.611 | 360 | 123 | 13 | 1 | 340 | 1 | 300 | 2.33e-70 | 221 |
| MS.gene46379.t1 | AT4G17680 | 40.793 | 353 | 139 | 10 | 1 | 339 | 18 | 314 | 1.47e-69 | 220 |
| MS.gene46379.t1 | AT1G32740 | 41.888 | 339 | 135 | 10 | 19 | 339 | 6 | 300 | 2.34e-66 | 211 |
| MS.gene46379.t1 | AT1G32740 | 42.177 | 294 | 119 | 6 | 64 | 339 | 7 | 267 | 2.88e-62 | 199 |
| MS.gene46379.t1 | AT1G32740 | 42.177 | 294 | 119 | 6 | 64 | 339 | 7 | 267 | 2.88e-62 | 199 |
| MS.gene46379.t1 | AT4G17680 | 44.030 | 268 | 105 | 6 | 86 | 339 | 6 | 242 | 2.14e-61 | 196 |
| MS.gene46379.t1 | AT4G17680 | 47.340 | 188 | 79 | 4 | 162 | 339 | 13 | 190 | 3.35e-46 | 155 |
| MS.gene46379.t1 | AT1G10650 | 31.325 | 249 | 153 | 4 | 99 | 340 | 46 | 283 | 9.04e-40 | 142 |
| MS.gene46379.t1 | AT1G10650 | 31.325 | 249 | 153 | 4 | 99 | 340 | 102 | 339 | 1.02e-39 | 143 |
| MS.gene46379.t1 | AT1G60610 | 29.555 | 247 | 158 | 2 | 99 | 339 | 103 | 339 | 1.77e-36 | 134 |
| MS.gene46379.t1 | AT1G60610 | 29.555 | 247 | 158 | 2 | 99 | 339 | 103 | 339 | 1.77e-36 | 134 |
| MS.gene46379.t1 | AT1G60610 | 29.555 | 247 | 158 | 2 | 99 | 339 | 103 | 339 | 1.77e-36 | 134 |
| MS.gene46379.t1 | AT1G60610 | 29.555 | 247 | 158 | 2 | 99 | 339 | 103 | 339 | 1.77e-36 | 134 |
| MS.gene46379.t1 | AT1G60610 | 29.555 | 247 | 158 | 2 | 99 | 339 | 103 | 339 | 1.77e-36 | 134 |
| MS.gene46379.t1 | AT5G45100 | 35.610 | 205 | 126 | 3 | 138 | 340 | 66 | 266 | 4.13e-30 | 115 |
| MS.gene46379.t1 | AT5G45100 | 35.610 | 205 | 126 | 3 | 138 | 340 | 93 | 293 | 5.72e-30 | 116 |
| MS.gene46379.t1 | AT1G45976 | 29.289 | 239 | 146 | 3 | 101 | 339 | 110 | 325 | 1.62e-29 | 115 |
| MS.gene46379.t1 | AT4G19700 | 35.407 | 209 | 128 | 4 | 135 | 340 | 99 | 303 | 8.06e-29 | 113 |
| MS.gene46379.t1 | AT4G35070 | 33.166 | 199 | 119 | 5 | 147 | 339 | 74 | 264 | 3.13e-28 | 110 |
| MS.gene46379.t1 | AT4G35070 | 33.166 | 199 | 119 | 5 | 147 | 339 | 19 | 209 | 7.30e-28 | 108 |
| MS.gene46379.t1 | AT3G12920 | 28.302 | 212 | 137 | 3 | 142 | 340 | 125 | 334 | 2.26e-26 | 107 |
| MS.gene46379.t1 | AT1G79110 | 29.717 | 212 | 129 | 3 | 147 | 340 | 145 | 354 | 8.34e-26 | 106 |
| MS.gene46379.t1 | AT1G79110 | 29.717 | 212 | 129 | 3 | 147 | 340 | 123 | 332 | 9.63e-26 | 105 |
| MS.gene46379.t1 | AT1G79110 | 29.767 | 215 | 128 | 4 | 147 | 340 | 145 | 357 | 1.85e-24 | 102 |
Find 85 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGCTTCCATGGTTAAC+TGG | 0.184505 | 8.4:-23961031 | None:intergenic |
| GAGAAGCTGCGGCGGCTTCT+TGG | 0.211237 | 8.4:-23961076 | None:intergenic |
| GACTTCAACGGTTGAATTCT+TGG | 0.271030 | 8.4:-23961366 | None:intergenic |
| TTCTTCTAAACAACAATAAC+AGG | 0.299401 | 8.4:+23960087 | MS.gene46379:CDS |
| AGAAGCTGCGGCGGCTTCTT+GGG | 0.312290 | 8.4:-23961075 | None:intergenic |
| CTGCGGCGGCTTCTTGGGCC+CGG | 0.322779 | 8.4:-23961070 | None:intergenic |
| ACATTATTGTTTGTTGCAGC+TGG | 0.354145 | 8.4:-23961106 | None:intergenic |
| TTTAGAAGAAGAATATTTGA+TGG | 0.355647 | 8.4:-23960074 | None:intergenic |
| GCAACTTCCACCACTCTATC+AGG | 0.376811 | 8.4:-23961215 | None:intergenic |
| CAACAACCATCAGGAGCATT+AGG | 0.380479 | 8.4:+23960265 | MS.gene46379:CDS |
| TGCGGCGGCTTCTTGGGCCC+GGG | 0.389790 | 8.4:-23961069 | None:intergenic |
| TTACCTGGGTTTGAAGATAT+TGG | 0.390243 | 8.4:-23960735 | None:intergenic |
| CCACTTCTTTCTCTCTTAAC+CGG | 0.391453 | 8.4:-23960959 | None:intergenic |
| CTGCCATACTTGGGCTTCCA+TGG | 0.410747 | 8.4:-23961039 | None:intergenic |
| TAACCATGGAAGCCCAAGTA+TGG | 0.415275 | 8.4:+23961036 | MS.gene46379:CDS |
| GAGAAATGATTAATAACGTT+AGG | 0.416596 | 8.4:-23960484 | None:intergenic |
| GGCCAGTAGAGACAACATTA+TGG | 0.416627 | 8.4:-23960549 | None:intergenic |
| GGCGAAGATGCCGGCGGAGG+CGG | 0.418507 | 8.4:+23961137 | MS.gene46379:CDS |
| TTCTTGGGAGTAAAGCAAAC+AGG | 0.420487 | 8.4:-23961350 | None:intergenic |
| GCATGAAACGCCGCCTCCGC+CGG | 0.421324 | 8.4:-23961147 | None:intergenic |
| GTGGAAGTTGCGGCGGCGCG+TGG | 0.427360 | 8.4:+23961227 | MS.gene46379:CDS |
| ACTTCAACGGTTGAATTCTT+GGG | 0.428768 | 8.4:-23961365 | None:intergenic |
| AGAAATGATTAATAACGTTA+GGG | 0.438438 | 8.4:-23960483 | None:intergenic |
| CTCCATAATGTTGTCTCTAC+TGG | 0.443287 | 8.4:+23960547 | MS.gene46379:CDS |
| GCCTCCGCCGGCATCTTCGC+CGG | 0.446322 | 8.4:-23961135 | None:intergenic |
| ACAAGCTGAGGATGCTGAAT+CGG | 0.449705 | 8.4:+23961181 | MS.gene46379:CDS |
| CGGAGGAAGCGGTGGCGCAC+CGG | 0.460350 | 8.4:+23960940 | MS.gene46379:CDS |
| CATTATTGTTTGTTGCAGCT+GGG | 0.472699 | 8.4:-23961105 | None:intergenic |
| AAGTATGGCAGGCAAAAGCC+CGG | 0.473882 | 8.4:+23961051 | MS.gene46379:CDS |
| TGAATAATTTGAGAAGGTTG+AGG | 0.479716 | 8.4:-23960514 | None:intergenic |
| ACCGGCGAAGATGCCGGCGG+AGG | 0.485312 | 8.4:+23961134 | MS.gene46379:CDS |
| CGCGGATTTAGAAGCGCGTA+CGG | 0.500807 | 8.4:+23961007 | MS.gene46379:CDS |
| ACTAAACGCGGCGGAGGAAG+CGG | 0.504819 | 8.4:+23960929 | MS.gene46379:CDS |
| GGCGTTTCATGCGGCGTGGA+AGG | 0.505182 | 8.4:+23961158 | MS.gene46379:CDS |
| AACAGCAGAAATGGACAAGA+AGG | 0.511556 | 8.4:+23960214 | MS.gene46379:intron |
| TCTCAAACCGGCGAAGATGC+CGG | 0.511840 | 8.4:+23961128 | MS.gene46379:CDS |
| TTGGGCTTCCATGGTTAACT+GGG | 0.521256 | 8.4:-23961030 | None:intergenic |
| GGCGGAGGCGGCGTTTCATG+CGG | 0.524962 | 8.4:+23961149 | MS.gene46379:CDS |
| GAAAGATGAATAATTTGAGA+AGG | 0.525108 | 8.4:-23960520 | None:intergenic |
| GCGGCGCGTGGGAAATGTAG+AGG | 0.525683 | 8.4:+23961239 | MS.gene46379:CDS |
| TTGTGTTGTTATTGTTGCAT+AGG | 0.525698 | 8.4:-23960327 | None:intergenic |
| GAATCTACGGCGGACATTGG+CGG | 0.530434 | 8.4:+23960878 | MS.gene46379:CDS |
| GTGTGAGAAGCGCGTGGCAA+CGG | 0.531560 | 8.4:+23961262 | MS.gene46379:CDS |
| CATGGAAGCCCAAGTATGGC+AGG | 0.538619 | 8.4:+23961040 | MS.gene46379:CDS |
| GGCGGACATTGGCGGAGAAG+AGG | 0.541874 | 8.4:+23960886 | MS.gene46379:CDS |
| TCTCGCAAGAGAGGAAGAGA+AGG | 0.542174 | 8.4:+23960454 | MS.gene46379:CDS |
| CAAACAATAATGTCTCAAAC+CGG | 0.545553 | 8.4:+23961116 | MS.gene46379:CDS |
| AGAGAATCTACGGCGGACAT+TGG | 0.549805 | 8.4:+23960875 | MS.gene46379:CDS |
| TGGAAGTTGCGGCGGCGCGT+GGG | 0.555769 | 8.4:+23961228 | MS.gene46379:CDS |
| TAAATCCGCGTTCCTGCGAG+TGG | 0.563827 | 8.4:-23960994 | None:intergenic |
| TGATAGAGTGGTGGAAGTTG+CGG | 0.565112 | 8.4:+23961217 | MS.gene46379:CDS |
| TGAGAAGCGCGTGGCAACGG+TGG | 0.570009 | 8.4:+23961265 | MS.gene46379:CDS |
| TATTTCAGGGAGAGAATCTA+CGG | 0.574428 | 8.4:+23960865 | MS.gene46379:intron |
| GGAGCTACTAAACGCGGCGG+AGG | 0.576161 | 8.4:+23960923 | MS.gene46379:CDS |
| CCGCCGCGTTTAGTAGCTCC+CGG | 0.576958 | 8.4:-23960920 | None:intergenic |
| CTGGGCTTGTAGAGAAGCTG+CGG | 0.587298 | 8.4:-23961087 | None:intergenic |
| AATTCGCAAAAGCCACTCGC+AGG | 0.588745 | 8.4:+23960982 | MS.gene46379:CDS |
| CGGCGCGTGGGAAATGTAGA+GGG | 0.594790 | 8.4:+23961240 | MS.gene46379:CDS |
| CAAACACACAAATGCCGACA+AGG | 0.601757 | 8.4:-23961296 | None:intergenic |
| GGCTTGTAGAGAAGCTGCGG+CGG | 0.603377 | 8.4:-23961084 | None:intergenic |
| AGTATGGCAGGCAAAAGCCC+GGG | 0.608050 | 8.4:+23961052 | MS.gene46379:CDS |
| AAAAGCCACTCGCAGGAACG+CGG | 0.614760 | 8.4:+23960989 | MS.gene46379:CDS |
| AAACGCGGCGGAGGAAGCGG+TGG | 0.615069 | 8.4:+23960932 | MS.gene46379:CDS |
| GGTACAAATTCTCGCAAGAG+AGG | 0.618293 | 8.4:+23960445 | MS.gene46379:intron |
| AGGCGGCGTTTCATGCGGCG+TGG | 0.622888 | 8.4:+23961154 | MS.gene46379:CDS |
| TTATATTGATCCTGATAGAG+TGG | 0.624363 | 8.4:+23961205 | MS.gene46379:CDS |
| GATAGTCCTAATGCTCCTGA+TGG | 0.626296 | 8.4:-23960271 | None:intergenic |
| ATTTGAGAAACAATTCCTTG+TGG | 0.628054 | 8.4:-23960688 | None:intergenic |
| CTAAGAGAGAAAGACTTCAA+CGG | 0.634503 | 8.4:-23961378 | None:intergenic |
| CGGCGTGGAAGGACAAGCTG+AGG | 0.634766 | 8.4:+23961169 | MS.gene46379:CDS |
| TTCTCATCTCTATTACCACA+AGG | 0.635335 | 8.4:+23960673 | MS.gene46379:CDS |
| GATCATCGAATGATAAGCGA+AGG | 0.636198 | 8.4:-23960570 | None:intergenic |
| GAAATGATTAATAACGTTAG+GGG | 0.644550 | 8.4:-23960482 | None:intergenic |
| ACAGCAGAAATGGACAAGAA+GGG | 0.646393 | 8.4:+23960215 | MS.gene46379:intron |
| TAGAGTGGTGGAAGTTGCGG+CGG | 0.650672 | 8.4:+23961220 | MS.gene46379:CDS |
| TATTGATCCTGATAGAGTGG+TGG | 0.652755 | 8.4:+23961208 | MS.gene46379:CDS |
| CCGGTTAAGAGAGAAAGAAG+TGG | 0.657511 | 8.4:+23960959 | MS.gene46379:CDS |
| TCTTGGGAGTAAAGCAAACA+GGG | 0.657653 | 8.4:-23961349 | None:intergenic |
| AGACCAATATCTTCAAACCC+AGG | 0.667723 | 8.4:+23960732 | MS.gene46379:CDS |
| TAGAGGGTGTGAGAAGCGCG+TGG | 0.693712 | 8.4:+23961256 | MS.gene46379:CDS |
| GCGTACGGCCCAGTTAACCA+TGG | 0.703157 | 8.4:+23961022 | MS.gene46379:CDS |
| CAAACCGGCGAAGATGCCGG+CGG | 0.709631 | 8.4:+23961131 | MS.gene46379:CDS |
| TTACCGGGAGCTACTAAACG+CGG | 0.757971 | 8.4:+23960917 | MS.gene46379:CDS |
| TTCAGGGAGAGAATCTACGG+CGG | 0.769377 | 8.4:+23960868 | MS.gene46379:intron |
| CCGGGAGCTACTAAACGCGG+CGG | 0.776946 | 8.4:+23960920 | MS.gene46379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCGATTTATTAGAAAT+TGG | + | chr8.4:23960804-23960823 | MS.gene46379:intron | 15.0% |
| !! | AGAAATGATTAATAACGTTA+GGG | - | chr8.4:23960486-23960505 | None:intergenic | 20.0% |
| !! | TCATATAGAATTGTATTTGA+GGG | - | chr8.4:23960151-23960170 | None:intergenic | 20.0% |
| !! | TTATTAGAAATTGGATAGAA+AGG | + | chr8.4:23960813-23960832 | MS.gene46379:intron | 20.0% |
| !! | TTTAGAAGAAGAATATTTGA+TGG | - | chr8.4:23960077-23960096 | None:intergenic | 20.0% |
| ! | GAAAGATGAATAATTTGAGA+AGG | - | chr8.4:23960523-23960542 | None:intergenic | 25.0% |
| ! | GAAATGATTAATAACGTTAG+GGG | - | chr8.4:23960485-23960504 | None:intergenic | 25.0% |
| ! | GAACAAGAAAAGAGATTAAT+TGG | - | chr8.4:23960187-23960206 | None:intergenic | 25.0% |
| ! | GAGAAATGATTAATAACGTT+AGG | - | chr8.4:23960487-23960506 | None:intergenic | 25.0% |
| ! | GTCATATAGAATTGTATTTG+AGG | - | chr8.4:23960152-23960171 | None:intergenic | 25.0% |
| ! | TTCTTCTAAACAACAATAAC+AGG | + | chr8.4:23960087-23960106 | MS.gene46379:CDS | 25.0% |
| !! | TTTGAATTTTTATGCGTGAT+GGG | + | chr8.4:23960842-23960861 | MS.gene46379:intron | 25.0% |
| !! | TTTTGAATTTTTATGCGTGA+TGG | + | chr8.4:23960841-23960860 | MS.gene46379:intron | 25.0% |
| !!! | TTGTTTTGTTTTGTTTACCT+GGG | - | chr8.4:23960752-23960771 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTTGTTTACC+TGG | - | chr8.4:23960753-23960772 | None:intergenic | 25.0% |
| ATTTGAGAAACAATTCCTTG+TGG | - | chr8.4:23960691-23960710 | None:intergenic | 30.0% | |
| CAAACAATAATGTCTCAAAC+CGG | + | chr8.4:23961116-23961135 | MS.gene46379:CDS | 30.0% | |
| TGAATAATTTGAGAAGGTTG+AGG | - | chr8.4:23960517-23960536 | None:intergenic | 30.0% | |
| TTATATTGATCCTGATAGAG+TGG | + | chr8.4:23961205-23961224 | MS.gene46379:CDS | 30.0% | |
| ! | TTGTGTTGTTATTGTTGCAT+AGG | - | chr8.4:23960330-23960349 | None:intergenic | 30.0% |
| ACTTCAACGGTTGAATTCTT+GGG | - | chr8.4:23961368-23961387 | None:intergenic | 35.0% | |
| AGAAGAGGCAAAAACATTAC+CGG | + | chr8.4:23960901-23960920 | MS.gene46379:CDS | 35.0% | |
| CAACAACAACAACAACAACA+AGG | + | chr8.4:23960631-23960650 | MS.gene46379:CDS | 35.0% | |
| CTAAGAGAGAAAGACTTCAA+CGG | - | chr8.4:23961381-23961400 | None:intergenic | 35.0% | |
| TATTTCAGGGAGAGAATCTA+CGG | + | chr8.4:23960865-23960884 | MS.gene46379:intron | 35.0% | |
| TTACCTGGGTTTGAAGATAT+TGG | - | chr8.4:23960738-23960757 | None:intergenic | 35.0% | |
| TTCTCATCTCTATTACCACA+AGG | + | chr8.4:23960673-23960692 | MS.gene46379:CDS | 35.0% | |
| ! | ACATTATTGTTTGTTGCAGC+TGG | - | chr8.4:23961109-23961128 | None:intergenic | 35.0% |
| ! | CATTATTGTTTGTTGCAGCT+GGG | - | chr8.4:23961108-23961127 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | - | chr8.4:23960252-23960271 | None:intergenic | 35.0% |
| ! | TCTTTTCCTAACAGCAGAAA+TGG | + | chr8.4:23960205-23960224 | MS.gene46379:intron | 35.0% |
| AACAGCAGAAATGGACAAGA+AGG | + | chr8.4:23960214-23960233 | MS.gene46379:intron | 40.0% | |
| ACAGCAGAAATGGACAAGAA+GGG | + | chr8.4:23960215-23960234 | MS.gene46379:intron | 40.0% | |
| AGACCAATATCTTCAAACCC+AGG | + | chr8.4:23960732-23960751 | MS.gene46379:CDS | 40.0% | |
| CAACAACAACAACAACCATC+AGG | + | chr8.4:23960256-23960275 | MS.gene46379:CDS | 40.0% | |
| CCACTTCTTTCTCTCTTAAC+CGG | - | chr8.4:23960962-23960981 | None:intergenic | 40.0% | |
| CTCCATAATGTTGTCTCTAC+TGG | + | chr8.4:23960547-23960566 | MS.gene46379:CDS | 40.0% | |
| GAAGAGGCAAAAACATTACC+GGG | + | chr8.4:23960902-23960921 | MS.gene46379:CDS | 40.0% | |
| GACTTCAACGGTTGAATTCT+TGG | - | chr8.4:23961369-23961388 | None:intergenic | 40.0% | |
| GATCATCGAATGATAAGCGA+AGG | - | chr8.4:23960573-23960592 | None:intergenic | 40.0% | |
| TATTGATCCTGATAGAGTGG+TGG | + | chr8.4:23961208-23961227 | MS.gene46379:CDS | 40.0% | |
| TCTTGGGAGTAAAGCAAACA+GGG | - | chr8.4:23961352-23961371 | None:intergenic | 40.0% | |
| TCTTGTCCATTTCTGCTGTT+AGG | - | chr8.4:23960214-23960233 | None:intergenic | 40.0% | |
| TTCTTGGGAGTAAAGCAAAC+AGG | - | chr8.4:23961353-23961372 | None:intergenic | 40.0% | |
| !! | TATGCGTGATGGGTATTTCA+GGG | + | chr8.4:23960852-23960871 | MS.gene46379:intron | 40.0% |
| !! | TTATGCGTGATGGGTATTTC+AGG | + | chr8.4:23960851-23960870 | MS.gene46379:intron | 40.0% |
| ACAAGCTGAGGATGCTGAAT+CGG | + | chr8.4:23961181-23961200 | MS.gene46379:CDS | 45.0% | |
| ATGTCTCAACAATTCACCGC+AGG | + | chr8.4:23960424-23960443 | MS.gene46379:intron | 45.0% | |
| CAAACACACAAATGCCGACA+AGG | - | chr8.4:23961299-23961318 | None:intergenic | 45.0% | |
| CCGGTTAAGAGAGAAAGAAG+TGG | + | chr8.4:23960959-23960978 | MS.gene46379:CDS | 45.0% | |
| CTTGCGAGAATTTGTACCTG+CGG | - | chr8.4:23960443-23960462 | None:intergenic | 45.0% | |
| GATAGTCCTAATGCTCCTGA+TGG | - | chr8.4:23960274-23960293 | None:intergenic | 45.0% | |
| GGCCAGTAGAGACAACATTA+TGG | - | chr8.4:23960552-23960571 | None:intergenic | 45.0% | |
| GGTACAAATTCTCGCAAGAG+AGG | + | chr8.4:23960445-23960464 | MS.gene46379:intron | 45.0% | |
| TAACCATGGAAGCCCAAGTA+TGG | + | chr8.4:23961036-23961055 | MS.gene46379:CDS | 45.0% | |
| TTGGGCTTCCATGGTTAACT+GGG | - | chr8.4:23961033-23961052 | None:intergenic | 45.0% | |
| ! | TGATAGAGTGGTGGAAGTTG+CGG | + | chr8.4:23961217-23961236 | MS.gene46379:CDS | 45.0% |
| !! | CAACAACCATCAGGAGCATT+AGG | + | chr8.4:23960265-23960284 | MS.gene46379:CDS | 45.0% |
| !! | CGGTGGTTGTTTTACCTTGT+CGG | + | chr8.4:23961282-23961301 | MS.gene46379:CDS | 45.0% |
| AAGTATGGCAGGCAAAAGCC+CGG | + | chr8.4:23961051-23961070 | MS.gene46379:CDS | 50.0% | |
| AATTCGCAAAAGCCACTCGC+AGG | + | chr8.4:23960982-23961001 | MS.gene46379:CDS | 50.0% | |
| AGAGAATCTACGGCGGACAT+TGG | + | chr8.4:23960875-23960894 | MS.gene46379:CDS | 50.0% | |
| CTTGGGCTTCCATGGTTAAC+TGG | - | chr8.4:23961034-23961053 | None:intergenic | 50.0% | |
| GCAACTTCCACCACTCTATC+AGG | - | chr8.4:23961218-23961237 | None:intergenic | 50.0% | |
| TCTCGCAAGAGAGGAAGAGA+AGG | + | chr8.4:23960454-23960473 | MS.gene46379:CDS | 50.0% | |
| TTACCGGGAGCTACTAAACG+CGG | + | chr8.4:23960917-23960936 | MS.gene46379:CDS | 50.0% | |
| TTCAGGGAGAGAATCTACGG+CGG | + | chr8.4:23960868-23960887 | MS.gene46379:intron | 50.0% | |
| ! | GGCTTTTGCCTGCCATACTT+GGG | - | chr8.4:23961051-23961070 | None:intergenic | 50.0% |
| AAAAGCCACTCGCAGGAACG+CGG | + | chr8.4:23960989-23961008 | MS.gene46379:CDS | 55.0% | |
| AGTATGGCAGGCAAAAGCCC+GGG | + | chr8.4:23961052-23961071 | MS.gene46379:CDS | 55.0% | |
| CATGGAAGCCCAAGTATGGC+AGG | + | chr8.4:23961040-23961059 | MS.gene46379:CDS | 55.0% | |
| CTGCCATACTTGGGCTTCCA+TGG | - | chr8.4:23961042-23961061 | None:intergenic | 55.0% | |
| CTGGGCTTGTAGAGAAGCTG+CGG | - | chr8.4:23961090-23961109 | None:intergenic | 55.0% | |
| GAATCTACGGCGGACATTGG+CGG | + | chr8.4:23960878-23960897 | MS.gene46379:CDS | 55.0% | |
| TAAATCCGCGTTCCTGCGAG+TGG | - | chr8.4:23960997-23961016 | None:intergenic | 55.0% | |
| TCTCAAACCGGCGAAGATGC+CGG | + | chr8.4:23961128-23961147 | MS.gene46379:CDS | 55.0% | |
| ! | CGCGGATTTAGAAGCGCGTA+CGG | + | chr8.4:23961007-23961026 | MS.gene46379:CDS | 55.0% |
| ! | GGGCTTTTGCCTGCCATACT+TGG | - | chr8.4:23961052-23961071 | None:intergenic | 55.0% |
| ! | TAGAGTGGTGGAAGTTGCGG+CGG | + | chr8.4:23961220-23961239 | MS.gene46379:CDS | 55.0% |
| ACTAAACGCGGCGGAGGAAG+CGG | + | chr8.4:23960929-23960948 | MS.gene46379:CDS | 60.0% | |
| AGAAGCTGCGGCGGCTTCTT+GGG | - | chr8.4:23961078-23961097 | None:intergenic | 60.0% | |
| CGGCGCGTGGGAAATGTAGA+GGG | + | chr8.4:23961240-23961259 | MS.gene46379:CDS | 60.0% | |
| GCGTACGGCCCAGTTAACCA+TGG | + | chr8.4:23961022-23961041 | MS.gene46379:CDS | 60.0% | |
| GGCTTGTAGAGAAGCTGCGG+CGG | - | chr8.4:23961087-23961106 | None:intergenic | 60.0% | |
| ! | GTGTGAGAAGCGCGTGGCAA+CGG | + | chr8.4:23961262-23961281 | MS.gene46379:CDS | 60.0% |
| ! | TAGAGGGTGTGAGAAGCGCG+TGG | + | chr8.4:23961256-23961275 | MS.gene46379:CDS | 60.0% |
| CAAACCGGCGAAGATGCCGG+CGG | + | chr8.4:23961131-23961150 | MS.gene46379:CDS | 65.0% | |
| CCGCCGCGTTTAGTAGCTCC+CGG | - | chr8.4:23960923-23960942 | None:intergenic | 65.0% | |
| CCGGGAGCTACTAAACGCGG+CGG | + | chr8.4:23960920-23960939 | MS.gene46379:CDS | 65.0% | |
| CGGCGTGGAAGGACAAGCTG+AGG | + | chr8.4:23961169-23961188 | MS.gene46379:CDS | 65.0% | |
| GAGAAGCTGCGGCGGCTTCT+TGG | - | chr8.4:23961079-23961098 | None:intergenic | 65.0% | |
| GCGGCGCGTGGGAAATGTAG+AGG | + | chr8.4:23961239-23961258 | MS.gene46379:CDS | 65.0% | |
| GGAGCTACTAAACGCGGCGG+AGG | + | chr8.4:23960923-23960942 | MS.gene46379:CDS | 65.0% | |
| GGCGGACATTGGCGGAGAAG+AGG | + | chr8.4:23960886-23960905 | MS.gene46379:CDS | 65.0% | |
| GGCGTTTCATGCGGCGTGGA+AGG | + | chr8.4:23961158-23961177 | MS.gene46379:CDS | 65.0% | |
| ! | TGAGAAGCGCGTGGCAACGG+TGG | + | chr8.4:23961265-23961284 | MS.gene46379:CDS | 65.0% |
| AAACGCGGCGGAGGAAGCGG+TGG | + | chr8.4:23960932-23960951 | MS.gene46379:CDS | 70.0% | |
| AGGCGGCGTTTCATGCGGCG+TGG | + | chr8.4:23961154-23961173 | MS.gene46379:CDS | 70.0% | |
| GCATGAAACGCCGCCTCCGC+CGG | - | chr8.4:23961150-23961169 | None:intergenic | 70.0% | |
| GGCGGAGGCGGCGTTTCATG+CGG | + | chr8.4:23961149-23961168 | MS.gene46379:CDS | 70.0% | |
| TGGAAGTTGCGGCGGCGCGT+GGG | + | chr8.4:23961228-23961247 | MS.gene46379:CDS | 70.0% | |
| ACCGGCGAAGATGCCGGCGG+AGG | + | chr8.4:23961134-23961153 | MS.gene46379:CDS | 75.0% | |
| CGGAGGAAGCGGTGGCGCAC+CGG | + | chr8.4:23960940-23960959 | MS.gene46379:CDS | 75.0% | |
| CTGCGGCGGCTTCTTGGGCC+CGG | - | chr8.4:23961073-23961092 | None:intergenic | 75.0% | |
| GCCTCCGCCGGCATCTTCGC+CGG | - | chr8.4:23961138-23961157 | None:intergenic | 75.0% | |
| GGCGAAGATGCCGGCGGAGG+CGG | + | chr8.4:23961137-23961156 | MS.gene46379:CDS | 75.0% | |
| GTGGAAGTTGCGGCGGCGCG+TGG | + | chr8.4:23961227-23961246 | MS.gene46379:CDS | 75.0% | |
| TGCGGCGGCTTCTTGGGCCC+GGG | - | chr8.4:23961072-23961091 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23960053 | 23961400 | 23960053 | ID=MS.gene46379 |
| chr8.4 | mRNA | 23960053 | 23961400 | 23960053 | ID=MS.gene46379.t1;Parent=MS.gene46379 |
| chr8.4 | exon | 23960053 | 23960108 | 23960053 | ID=MS.gene46379.t1.exon1;Parent=MS.gene46379.t1 |
| chr8.4 | CDS | 23960053 | 23960108 | 23960053 | ID=cds.MS.gene46379.t1;Parent=MS.gene46379.t1 |
| chr8.4 | exon | 23960219 | 23960349 | 23960219 | ID=MS.gene46379.t1.exon2;Parent=MS.gene46379.t1 |
| chr8.4 | CDS | 23960219 | 23960349 | 23960219 | ID=cds.MS.gene46379.t1;Parent=MS.gene46379.t1 |
| chr8.4 | exon | 23960446 | 23960753 | 23960446 | ID=MS.gene46379.t1.exon3;Parent=MS.gene46379.t1 |
| chr8.4 | CDS | 23960446 | 23960753 | 23960446 | ID=cds.MS.gene46379.t1;Parent=MS.gene46379.t1 |
| chr8.4 | exon | 23960873 | 23961400 | 23960873 | ID=MS.gene46379.t1.exon4;Parent=MS.gene46379.t1 |
| chr8.4 | CDS | 23960873 | 23961400 | 23960873 | ID=cds.MS.gene46379.t1;Parent=MS.gene46379.t1 |
| Gene Sequence |
| Protein sequence |
