Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015573.t1 | AES94086.2 | 100 | 270 | 0 | 0 | 1 | 270 | 33 | 302 | 4.50E-145 | 523.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015573.t1 | Q54KJ8 | 25.6 | 223 | 150 | 6 | 10 | 218 | 6 | 226 | 3.0e-12 | 73.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015573.t1 | G7KDE9 | 100.0 | 270 | 0 | 0 | 1 | 270 | 1 | 270 | 3.3e-145 | 523.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87743 | MS.gene015573 | PPI |
| MS.gene87064 | MS.gene015573 | PPI |
| MS.gene015573 | MS.gene82237 | PPI |
| MS.gene015573 | MS.gene42075 | PPI |
| MS.gene76728 | MS.gene015573 | PPI |
| MS.gene015573 | MS.gene48819 | PPI |
| MS.gene77045 | MS.gene015573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015573.t1 | MTR_5g010620 | 100.000 | 270 | 0 | 0 | 1 | 270 | 33 | 302 | 0.0 | 556 |
| MS.gene015573.t1 | MTR_5g010620 | 100.000 | 270 | 0 | 0 | 1 | 270 | 1 | 270 | 0.0 | 555 |
| MS.gene015573.t1 | MTR_8g096950 | 75.445 | 281 | 55 | 2 | 1 | 267 | 1 | 281 | 5.76e-154 | 430 |
| MS.gene015573.t1 | MTR_7g055620 | 49.558 | 113 | 31 | 4 | 6 | 118 | 171 | 257 | 2.15e-19 | 87.0 |
| MS.gene015573.t1 | MTR_0411s0050 | 59.649 | 57 | 23 | 0 | 75 | 131 | 15 | 71 | 2.86e-19 | 80.5 |
| MS.gene015573.t1 | MTR_3g110015 | 60.000 | 80 | 18 | 2 | 6 | 71 | 6 | 85 | 3.20e-19 | 80.5 |
| MS.gene015573.t1 | MTR_3g109978 | 60.000 | 80 | 18 | 2 | 6 | 71 | 97 | 176 | 3.50e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015573.t1 | AT4G20330 | 64.912 | 285 | 82 | 4 | 1 | 270 | 1 | 282 | 9.51e-122 | 349 |
| MS.gene015573.t1 | AT4G21010 | 55.036 | 278 | 110 | 6 | 1 | 266 | 1 | 275 | 1.21e-93 | 277 |
Find 54 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCTGTTATTGACTTAA+AGG | 0.158931 | 5.1:+3894471 | MS.gene015573:CDS |
| TCCCCATCGTATCTTACTTT+TGG | 0.237589 | 5.1:-3894245 | None:intergenic |
| CTTCTGGAAATTTGCGTATC+AGG | 0.239866 | 5.1:-3894447 | None:intergenic |
| AACTGTAATGGAGGACTTAC+AGG | 0.272992 | 5.1:+3894504 | MS.gene015573:CDS |
| ATGGGCACTTTAGGATCATT+AGG | 0.284072 | 5.1:-3895698 | None:intergenic |
| TCAATAACAGCAATGCCTTC+TGG | 0.315673 | 5.1:-3894463 | None:intergenic |
| AGGTCATCATCCACCTTAAT+GGG | 0.315953 | 5.1:-3895716 | None:intergenic |
| TGAAAGGTGGCAGGGAGATT+TGG | 0.323843 | 5.1:+3895636 | MS.gene015573:CDS |
| TAGGTCATCATCCACCTTAA+TGG | 0.327997 | 5.1:-3895717 | None:intergenic |
| TCCACCTTAATGGGCACTTT+AGG | 0.329618 | 5.1:-3895707 | None:intergenic |
| TGATCCTAAAGTGCCCATTA+AGG | 0.368344 | 5.1:+3895703 | MS.gene015573:CDS |
| TTGACCGGAGCAAGAGCATT+TGG | 0.376765 | 5.1:-3892602 | None:intergenic |
| CTCTTTGCAGTGTTAGTAGC+AGG | 0.378308 | 5.1:-3895818 | None:intergenic |
| CGCTTCATTTGAGCTCCAAC+AGG | 0.397843 | 5.1:-3892677 | None:intergenic |
| GCTGACTAATGCCCATCTTC+CGG | 0.401133 | 5.1:+3895922 | MS.gene015573:CDS |
| ATAGTCGAAACATGCTCTTC+GGG | 0.403328 | 5.1:+3894405 | MS.gene015573:intron |
| GAGGAGGAGTGCAGCACAAA+TGG | 0.404625 | 5.1:+3895838 | MS.gene015573:CDS |
| GACTCGGCAGGCTTTAACAT+TGG | 0.404721 | 5.1:+3894151 | MS.gene015573:intron |
| ATTAGTCAGCTTGGTCCTCT+TGG | 0.410191 | 5.1:-3895909 | None:intergenic |
| TATAGTCGAAACATGCTCTT+CGG | 0.434439 | 5.1:+3894404 | MS.gene015573:intron |
| TGGGCACTTTAGGATCATTA+GGG | 0.444208 | 5.1:-3895697 | None:intergenic |
| TATAGGCTTTGAAAGGTGGC+AGG | 0.480454 | 5.1:+3895627 | MS.gene015573:intron |
| GCTGTCCAACTTTGATTCAC+AGG | 0.485843 | 5.1:+3895661 | MS.gene015573:CDS |
| GTCTTCCTGTGAATCAAAGT+TGG | 0.504653 | 5.1:-3895666 | None:intergenic |
| GAAATTCAGATGGCGTTACA+AGG | 0.505735 | 5.1:+3892491 | None:intergenic |
| GGATTCATACCCAACTGTAA+TGG | 0.506042 | 5.1:+3894492 | MS.gene015573:CDS |
| TTCAGTTTATAGGCTTTGAA+AGG | 0.517712 | 5.1:+3895620 | MS.gene015573:intron |
| TGTGCCAAATGCTCTTGCTC+CGG | 0.535916 | 5.1:+3892598 | MS.gene015573:CDS |
| TGTAAGTCCTCCATTACAGT+TGG | 0.544872 | 5.1:-3894502 | None:intergenic |
| ATCCAAAAGTAAGATACGAT+GGG | 0.545740 | 5.1:+3894243 | MS.gene015573:CDS |
| AATCCAAAAGTAAGATACGA+TGG | 0.561739 | 5.1:+3894242 | MS.gene015573:CDS |
| ATGTTGAAGTCTCTCTGTAT+CGG | 0.571558 | 5.1:-3892633 | None:intergenic |
| GTGATATGATTGATATAGAG+AGG | 0.575017 | 5.1:+3895771 | MS.gene015573:CDS |
| AGTATTCGTAAAGCTCCTGT+TGG | 0.575171 | 5.1:+3892662 | MS.gene015573:CDS |
| AAGATGGGCATTAGTCAGCT+TGG | 0.579562 | 5.1:-3895918 | None:intergenic |
| CTGATACGCAAATTTCCAGA+AGG | 0.581325 | 5.1:+3894448 | MS.gene015573:CDS |
| ATCGAGCATAGCAGCAAACA+AGG | 0.582292 | 5.1:+3892562 | MS.gene015573:CDS |
| AGTTTATAGGCTTTGAAAGG+TGG | 0.583829 | 5.1:+3895623 | MS.gene015573:intron |
| TCCTAAAGTGCCCATTAAGG+TGG | 0.592622 | 5.1:+3895706 | MS.gene015573:CDS |
| TGTTAGCTTTCATGTCCACA+TGG | 0.600643 | 5.1:-3894193 | None:intergenic |
| GTAAGTCCTCCATTACAGTT+GGG | 0.602392 | 5.1:-3894501 | None:intergenic |
| AGGAGTGCAGCACAAATGGA+AGG | 0.606142 | 5.1:+3895842 | MS.gene015573:CDS |
| GTATCGGTCGAAAATTTGAC+CGG | 0.607296 | 5.1:-3892617 | None:intergenic |
| CACTTTAGGATCATTAGGGT+AGG | 0.617730 | 5.1:-3895693 | None:intergenic |
| TGGGGAAAGATTCTCTTACA+AGG | 0.617929 | 5.1:+3894262 | MS.gene015573:CDS |
| TTCATACCCAACTGTAATGG+AGG | 0.622275 | 5.1:+3894495 | MS.gene015573:CDS |
| TGATATGATTGATATAGAGA+GGG | 0.634684 | 5.1:+3895772 | MS.gene015573:CDS |
| ATAGGCTTTGAAAGGTGGCA+GGG | 0.637475 | 5.1:+3895628 | MS.gene015573:intron |
| CTACTAACACTGCAAAGAGG+AGG | 0.649367 | 5.1:+3895822 | MS.gene015573:CDS |
| AATAAATGAAACATGCCATG+TGG | 0.663478 | 5.1:+3894178 | MS.gene015573:CDS |
| TCCAAAAGTAAGATACGATG+GGG | 0.666787 | 5.1:+3894244 | MS.gene015573:CDS |
| AGAAGAATGAAATCACCAAG+AGG | 0.680362 | 5.1:+3895894 | MS.gene015573:CDS |
| CTGCTACTAACACTGCAAAG+AGG | 0.683295 | 5.1:+3895819 | MS.gene015573:CDS |
| TCTATATCAATCATATCACG+AGG | 0.737039 | 5.1:-3895767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATTTGTTTAGTTAT+AGG | - | chr5.1:3895155-3895174 | None:intergenic | 10.0% |
| !! | TAAAATATAATAGACAAATA+TGG | + | chr5.1:3894800-3894819 | MS.gene015573:intron | 10.0% |
| !! | TTCTAATAATATTTATAAGA+TGG | - | chr5.1:3893842-3893861 | None:intergenic | 10.0% |
| !! | TTTATATTTGTTTAGTTATA+GGG | - | chr5.1:3895154-3895173 | None:intergenic | 10.0% |
| !!! | GTTATAATAAAAAGTATTAA+TGG | + | chr5.1:3893778-3893797 | MS.gene015573:intron | 10.0% |
| !!! | TTAATACTTTTTATTATAAC+CGG | - | chr5.1:3893778-3893797 | None:intergenic | 10.0% |
| !! | AACTTATATTTATATTGTTG+TGG | - | chr5.1:3894861-3894880 | None:intergenic | 15.0% |
| !! | ATAAAAATAATATCAACTTG+TGG | - | chr5.1:3892760-3892779 | None:intergenic | 15.0% |
| !! | TAAAAATAATATCAACTTGT+GGG | - | chr5.1:3892759-3892778 | None:intergenic | 15.0% |
| !! | TCAAAATTTAGGTATATAAT+TGG | + | chr5.1:3895567-3895586 | MS.gene015573:intron | 15.0% |
| !! | TTGTATATGATGTATAAATA+TGG | + | chr5.1:3893963-3893982 | MS.gene015573:intron | 15.0% |
| !! | TTTATGATTATGAATACTTT+GGG | + | chr5.1:3892775-3892794 | MS.gene015573:intron | 15.0% |
| !!! | ATATTAAAGAGCATAAAATT+AGG | - | chr5.1:3892803-3892822 | None:intergenic | 15.0% |
| !!! | TAATACTTTTTATTATAACC+GGG | - | chr5.1:3893777-3893796 | None:intergenic | 15.0% |
| !!! | TTATTGGTTAATATTTATGT+TGG | - | chr5.1:3895368-3895387 | None:intergenic | 15.0% |
| !!! | TTTTATGATTATGAATACTT+TGG | + | chr5.1:3892774-3892793 | MS.gene015573:intron | 15.0% |
| !! | AAATAGTAGTATAAAAGAAG+AGG | - | chr5.1:3894353-3894372 | None:intergenic | 20.0% |
| !! | ATAATATTTATAAGATGGCA+TGG | - | chr5.1:3893837-3893856 | None:intergenic | 20.0% |
| !! | TAATATTTATAAGATGGCAT+GGG | - | chr5.1:3893836-3893855 | None:intergenic | 20.0% |
| !! | TATCAAAAACCTAGATATTA+AGG | + | chr5.1:3892976-3892995 | MS.gene015573:intron | 20.0% |
| !!! | ATTTCATTCTTCTTTTTCTT+AGG | - | chr5.1:3895887-3895906 | None:intergenic | 20.0% |
| !!! | CTTCTTTTATACTACTATTT+TGG | + | chr5.1:3894353-3894372 | MS.gene015573:intron | 20.0% |
| !!! | TTGTATTTTCTTAATAGACT+CGG | + | chr5.1:3894135-3894154 | MS.gene015573:intron | 20.0% |
| ! | AAAAAGCCTAAGTTGTATAT+AGG | + | chr5.1:3893112-3893131 | MS.gene015573:intron | 25.0% |
| ! | AAAACAATCACAGTTAAAAG+TGG | + | chr5.1:3892851-3892870 | MS.gene015573:intron | 25.0% |
| ! | ACTATTTAAGCTTCTTTCAT+AGG | - | chr5.1:3894739-3894758 | None:intergenic | 25.0% |
| ! | ATATTTGGGAATAATAAGCT+GGG | - | chr5.1:3894998-3895017 | None:intergenic | 25.0% |
| ! | ATTAGGAACAAAATAGCTTA+TGG | - | chr5.1:3894003-3894022 | None:intergenic | 25.0% |
| ! | CTGAAATTGTAATTACGTTA+TGG | + | chr5.1:3892938-3892957 | MS.gene015573:intron | 25.0% |
| ! | GATACCATATTGAAGTTATA+GGG | - | chr5.1:3894931-3894950 | None:intergenic | 25.0% |
| ! | GGTAAATTAGATTTAGTAGT+TGG | + | chr5.1:3894525-3894544 | MS.gene015573:intron | 25.0% |
| ! | GGTTATTCTTATAAATGCAT+GGG | - | chr5.1:3895133-3895152 | None:intergenic | 25.0% |
| ! | GTTATTCTTATAAATGCATG+GGG | - | chr5.1:3895132-3895151 | None:intergenic | 25.0% |
| ! | GTTTAATTGGACTAATTTGA+TGG | + | chr5.1:3893708-3893727 | MS.gene015573:intron | 25.0% |
| ! | TAAATAGTCAACACAATTGA+TGG | + | chr5.1:3894751-3894770 | MS.gene015573:intron | 25.0% |
| ! | TATATTTGGGAATAATAAGC+TGG | - | chr5.1:3894999-3895018 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCTATCTAAAG+AGG | + | chr5.1:3893377-3893396 | MS.gene015573:intron | 25.0% |
| ! | TCATAAAGCTTTCAGTTTAT+AGG | + | chr5.1:3895610-3895629 | MS.gene015573:intron | 25.0% |
| ! | TGATATGATTGATATAGAGA+GGG | + | chr5.1:3895772-3895791 | MS.gene015573:CDS | 25.0% |
| ! | TTGTATAAAGTATAACCCAT+GGG | - | chr5.1:3893893-3893912 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTCTTAGGTTT+AGG | - | chr5.1:3895881-3895900 | None:intergenic | 25.0% |
| !! | TTTTATTATAACCGGGTTAA+TGG | - | chr5.1:3893770-3893789 | None:intergenic | 25.0% |
| !!! | AAGATGTTTTTGACAATATG+AGG | + | chr5.1:3894216-3894235 | MS.gene015573:CDS | 25.0% |
| !!! | ATAAGCTATTTTGTTCCTAA+TGG | + | chr5.1:3894002-3894021 | MS.gene015573:intron | 25.0% |
| !!! | CATTCATTTTTCTGAAACAT+TGG | + | chr5.1:3894565-3894584 | MS.gene015573:intron | 25.0% |
| !!! | CTGTTTAAGCATGTTTTTAT+TGG | + | chr5.1:3895459-3895478 | MS.gene015573:intron | 25.0% |
| !!! | CTTATTTTCATAAACTCTTC+TGG | - | chr5.1:3893272-3893291 | None:intergenic | 25.0% |
| !!! | TATACAACTTAGGCTTTTTT+TGG | - | chr5.1:3893111-3893130 | None:intergenic | 25.0% |
| AAGCACCAAGTAAGTATATA+TGG | - | chr5.1:3894111-3894130 | None:intergenic | 30.0% | |
| AAGTACTAGTGAAACTGTTT+GGG | - | chr5.1:3893341-3893360 | None:intergenic | 30.0% | |
| AATAAATGAAACATGCCATG+TGG | + | chr5.1:3894178-3894197 | MS.gene015573:CDS | 30.0% | |
| AATAAGCTGAAAACACCTTA+TGG | + | chr5.1:3893286-3893305 | MS.gene015573:intron | 30.0% | |
| AATCCAAAAGTAAGATACGA+TGG | + | chr5.1:3894242-3894261 | MS.gene015573:CDS | 30.0% | |
| AGAAGAAACAATCTCAGTAT+AGG | - | chr5.1:3893670-3893689 | None:intergenic | 30.0% | |
| ATAGTTGCTCAATAAGATCA+AGG | - | chr5.1:3894630-3894649 | None:intergenic | 30.0% | |
| ATATGCATAAGATGTTGCAA+GGG | + | chr5.1:3894776-3894795 | MS.gene015573:intron | 30.0% | |
| ATCCAAAAGTAAGATACGAT+GGG | + | chr5.1:3894243-3894262 | MS.gene015573:CDS | 30.0% | |
| ATGCATAAAATATGCATGGT+CGG | + | chr5.1:3893065-3893084 | MS.gene015573:intron | 30.0% | |
| ATTGTCTATAGGATAAGTCA+GGG | - | chr5.1:3895028-3895047 | None:intergenic | 30.0% | |
| CGATACCATATTGAAGTTAT+AGG | - | chr5.1:3894932-3894951 | None:intergenic | 30.0% | |
| CTAACCCTATAACTTCAATA+TGG | + | chr5.1:3894924-3894943 | MS.gene015573:intron | 30.0% | |
| CTTGTATAAAGTATAACCCA+TGG | - | chr5.1:3893894-3893913 | None:intergenic | 30.0% | |
| GAAGAAACTACTTGTACTTT+AGG | + | chr5.1:3893859-3893878 | MS.gene015573:intron | 30.0% | |
| GACAATGCATAAAATATGCA+TGG | + | chr5.1:3893061-3893080 | MS.gene015573:intron | 30.0% | |
| GGGTTATTCTTATAAATGCA+TGG | - | chr5.1:3895134-3895153 | None:intergenic | 30.0% | |
| GTATATGGGATAAATAACAC+TGG | - | chr5.1:3894967-3894986 | None:intergenic | 30.0% | |
| GTATTCTGACCTTAATATCT+AGG | - | chr5.1:3892988-3893007 | None:intergenic | 30.0% | |
| GTGATATGATTGATATAGAG+AGG | + | chr5.1:3895771-3895790 | MS.gene015573:CDS | 30.0% | |
| GTGGTCAATAGTCAAAATTT+AGG | + | chr5.1:3895556-3895575 | MS.gene015573:intron | 30.0% | |
| TAAGTACTAGTGAAACTGTT+TGG | - | chr5.1:3893342-3893361 | None:intergenic | 30.0% | |
| TATATGCATAAGATGTTGCA+AGG | + | chr5.1:3894775-3894794 | MS.gene015573:intron | 30.0% | |
| TCTATATCAATCATATCACG+AGG | - | chr5.1:3895770-3895789 | None:intergenic | 30.0% | |
| TGAACAAAATTGAAAGACGA+AGG | - | chr5.1:3894315-3894334 | None:intergenic | 30.0% | |
| TGTTGCCATATATACTTACT+TGG | + | chr5.1:3894103-3894122 | MS.gene015573:intron | 30.0% | |
| TTAGAGCTTAGATTGTCTAT+AGG | - | chr5.1:3895039-3895058 | None:intergenic | 30.0% | |
| TTGTAATTACGTTATGGTCA+TGG | + | chr5.1:3892944-3892963 | MS.gene015573:intron | 30.0% | |
| ! | ACTAATTTGATGGATGACTT+TGG | + | chr5.1:3893718-3893737 | MS.gene015573:intron | 30.0% |
| ! | ATTAAGTTGCTTATCCATAC+AGG | - | chr5.1:3893139-3893158 | None:intergenic | 30.0% |
| ! | CGTTATTGATCTTCTTTTTG+AGG | + | chr5.1:3892700-3892719 | MS.gene015573:CDS | 30.0% |
| ! | GACATTTCAATCATGTTTTG+TGG | + | chr5.1:3895073-3895092 | MS.gene015573:intron | 30.0% |
| ! | GTTAGTCTATCAGATACAAA+GGG | - | chr5.1:3894909-3894928 | None:intergenic | 30.0% |
| ! | TCCAAAACACACTCTTTTAT+TGG | - | chr5.1:3895384-3895403 | None:intergenic | 30.0% |
| ! | TTAAGTTGCTTATCCATACA+GGG | - | chr5.1:3893138-3893157 | None:intergenic | 30.0% |
| !! | ACCAATAAAAGAGTGTGTTT+TGG | + | chr5.1:3895380-3895399 | MS.gene015573:intron | 30.0% |
| !! | ATAGTGACTGGTTAGTATTT+TGG | - | chr5.1:3894715-3894734 | None:intergenic | 30.0% |
| !! | CATTGCTGTTATTGACTTAA+AGG | + | chr5.1:3894471-3894490 | MS.gene015573:CDS | 30.0% |
| !! | TTCAGTTTATAGGCTTTGAA+AGG | + | chr5.1:3895620-3895639 | MS.gene015573:intron | 30.0% |
| !!! | TGAGTGATATTTTTTAGAGG+TGG | + | chr5.1:3895537-3895556 | MS.gene015573:intron | 30.0% |
| !!! | TGGTGAGTGATATTTTTTAG+AGG | + | chr5.1:3895534-3895553 | MS.gene015573:intron | 30.0% |
| AAATTCATCGTGCACATGAA+AGG | - | chr5.1:3894674-3894693 | None:intergenic | 35.0% | |
| ACACCTTATGGACATATCAT+TGG | + | chr5.1:3893298-3893317 | MS.gene015573:intron | 35.0% | |
| AGAAGAATGAAATCACCAAG+AGG | + | chr5.1:3895894-3895913 | MS.gene015573:CDS | 35.0% | |
| AGAGTGTAACTACAAAGAGA+GGG | - | chr5.1:3895259-3895278 | None:intergenic | 35.0% | |
| ATGTTGAAGTCTCTCTGTAT+CGG | - | chr5.1:3892636-3892655 | None:intergenic | 35.0% | |
| ATTATTCCTACCCAAAGTCT+CGG | + | chr5.1:3895195-3895214 | MS.gene015573:intron | 35.0% | |
| ATTCTTATAAATGCATGGGG+AGG | - | chr5.1:3895129-3895148 | None:intergenic | 35.0% | |
| CAATAAGATCAAGGTGGTAT+GGG | - | chr5.1:3894621-3894640 | None:intergenic | 35.0% | |
| CATGGGACTATAAATTTGCA+CGG | - | chr5.1:3893819-3893838 | None:intergenic | 35.0% | |
| GATTGTCTATAGGATAAGTC+AGG | - | chr5.1:3895029-3895048 | None:intergenic | 35.0% | |
| GGTCATATTATTTCCTCACA+GGG | + | chr5.1:3893739-3893758 | MS.gene015573:intron | 35.0% | |
| TATAGTCGAAACATGCTCTT+CGG | + | chr5.1:3894404-3894423 | MS.gene015573:intron | 35.0% | |
| TATTATAACCGGGTTAATGG+TGG | - | chr5.1:3893767-3893786 | None:intergenic | 35.0% | |
| TATTGTTGTGGATGATGAGT+TGG | - | chr5.1:3894849-3894868 | None:intergenic | 35.0% | |
| TCAAAATCACGTTGCAGTTT+AGG | + | chr5.1:3893921-3893940 | MS.gene015573:intron | 35.0% | |
| TCAATAAGATCAAGGTGGTA+TGG | - | chr5.1:3894622-3894641 | None:intergenic | 35.0% | |
| TCCAAAAGTAAGATACGATG+GGG | + | chr5.1:3894244-3894263 | MS.gene015573:CDS | 35.0% | |
| TGCATAAAATATGCATGGTC+GGG | + | chr5.1:3893066-3893085 | MS.gene015573:intron | 35.0% | |
| TGGTCATATTATTTCCTCAC+AGG | + | chr5.1:3893738-3893757 | MS.gene015573:intron | 35.0% | |
| TGGTCCCACTAAATTCATAT+GGG | - | chr5.1:3895348-3895367 | None:intergenic | 35.0% | |
| TTCCTAATGGTTATTCTGAG+TGG | + | chr5.1:3894015-3894034 | MS.gene015573:intron | 35.0% | |
| TTGGTCCCACTAAATTCATA+TGG | - | chr5.1:3895349-3895368 | None:intergenic | 35.0% | |
| ! | ACTTCAATATGGTATCGAAG+TGG | + | chr5.1:3894935-3894954 | MS.gene015573:intron | 35.0% |
| ! | ATTTTCTTAATAGACTCGGC+AGG | + | chr5.1:3894139-3894158 | MS.gene015573:intron | 35.0% |
| ! | CATGTGCACGATGAATTTTT+GGG | + | chr5.1:3894676-3894695 | MS.gene015573:intron | 35.0% |
| ! | CTTAGTGTTGCTGAAAATTG+TGG | + | chr5.1:3892894-3892913 | MS.gene015573:intron | 35.0% |
| ! | CTTTTTCTTAGGTTTAGGCT+TGG | - | chr5.1:3895876-3895895 | None:intergenic | 35.0% |
| ! | TCATGTGCACGATGAATTTT+TGG | + | chr5.1:3894675-3894694 | MS.gene015573:intron | 35.0% |
| !! | AGTTTATAGGCTTTGAAAGG+TGG | + | chr5.1:3895623-3895642 | MS.gene015573:intron | 35.0% |
| !! | GGTTAGTCTATCAGATACAA+AGG | - | chr5.1:3894910-3894929 | None:intergenic | 35.0% |
| !! | TTCAAGTTCTGAAAAAGCTC+CGG | - | chr5.1:3895944-3895963 | None:intergenic | 35.0% |
| !!! | ACCTAAAACAGCTTTTTCGT+GGG | + | chr5.1:3895735-3895754 | MS.gene015573:CDS | 35.0% |
| !!! | ACTTAGGCTTTTTTTGGTAG+TGG | - | chr5.1:3893105-3893124 | None:intergenic | 35.0% |
| !!! | CAGGCTTCATTCCATTTTTT+TGG | - | chr5.1:3895802-3895821 | None:intergenic | 35.0% |
| ACAGGGCCTATATACAACTT+AGG | - | chr5.1:3893121-3893140 | None:intergenic | 40.0% | |
| AGCTGGGACAAGATTGTATA+TGG | - | chr5.1:3894982-3895001 | None:intergenic | 40.0% | |
| AGGTCATCATCCACCTTAAT+GGG | - | chr5.1:3895719-3895738 | None:intergenic | 40.0% | |
| AGTATTCGTAAAGCTCCTGT+TGG | + | chr5.1:3892662-3892681 | MS.gene015573:CDS | 40.0% | |
| AGTCAGGGACAGACTATATT+TGG | - | chr5.1:3895013-3895032 | None:intergenic | 40.0% | |
| AGTCTATCAGATACAAAGGG+AGG | - | chr5.1:3894906-3894925 | None:intergenic | 40.0% | |
| AGTTGTATATAGGCCCTGTA+TGG | + | chr5.1:3893122-3893141 | MS.gene015573:intron | 40.0% | |
| ATAGTCGAAACATGCTCTTC+GGG | + | chr5.1:3894405-3894424 | MS.gene015573:intron | 40.0% | |
| CACCACTCAGAATAACCATT+AGG | - | chr5.1:3894020-3894039 | None:intergenic | 40.0% | |
| CAGCCAATGATATGTCCATA+AGG | - | chr5.1:3893304-3893323 | None:intergenic | 40.0% | |
| CTGATACGCAAATTTCCAGA+AGG | + | chr5.1:3894448-3894467 | MS.gene015573:CDS | 40.0% | |
| GAGAGGGATCTCCAAAAAAA+TGG | + | chr5.1:3895788-3895807 | MS.gene015573:CDS | 40.0% | |
| GCACATGAAAGGAATCAAGT+TGG | - | chr5.1:3894663-3894682 | None:intergenic | 40.0% | |
| GCATAAAATATGCATGGTCG+GGG | + | chr5.1:3893067-3893086 | MS.gene015573:intron | 40.0% | |
| GCTGGGACAAGATTGTATAT+GGG | - | chr5.1:3894981-3895000 | None:intergenic | 40.0% | |
| GGACTATAAATTTGCACGGA+AGG | - | chr5.1:3893815-3893834 | None:intergenic | 40.0% | |
| GGATTCATACCCAACTGTAA+TGG | + | chr5.1:3894492-3894511 | MS.gene015573:CDS | 40.0% | |
| GGGTCCCATATGAATTTAGT+GGG | + | chr5.1:3895341-3895360 | MS.gene015573:intron | 40.0% | |
| GTAAGTCCTCCATTACAGTT+GGG | - | chr5.1:3894504-3894523 | None:intergenic | 40.0% | |
| GTATAGGTACCTCTTGTCAT+AGG | - | chr5.1:3893654-3893673 | None:intergenic | 40.0% | |
| GTCAGGGACAGACTATATTT+GGG | - | chr5.1:3895012-3895031 | None:intergenic | 40.0% | |
| GTCTTCCTGTGAATCAAAGT+TGG | - | chr5.1:3895669-3895688 | None:intergenic | 40.0% | |
| GTTGCTCAATAAGATCAAGG+TGG | - | chr5.1:3894627-3894646 | None:intergenic | 40.0% | |
| TAGGTCATCATCCACCTTAA+TGG | - | chr5.1:3895720-3895739 | None:intergenic | 40.0% | |
| TCAATAACAGCAATGCCTTC+TGG | - | chr5.1:3894466-3894485 | None:intergenic | 40.0% | |
| TCTTTCATAGGCATAGTGAC+TGG | - | chr5.1:3894727-3894746 | None:intergenic | 40.0% | |
| TGGGGAAAGATTCTCTTACA+AGG | + | chr5.1:3894262-3894281 | MS.gene015573:CDS | 40.0% | |
| TGGGTCCCATATGAATTTAG+TGG | + | chr5.1:3895340-3895359 | MS.gene015573:intron | 40.0% | |
| TGTAAGTCCTCCATTACAGT+TGG | - | chr5.1:3894505-3894524 | None:intergenic | 40.0% | |
| TTCATACCCAACTGTAATGG+AGG | + | chr5.1:3894495-3894514 | MS.gene015573:CDS | 40.0% | |
| ! | AACTGTAATGGAGGACTTAC+AGG | + | chr5.1:3894504-3894523 | MS.gene015573:CDS | 40.0% |
| ! | ATAAACCTTTTCAGCCAACC+CGG | + | chr5.1:3894051-3894070 | MS.gene015573:intron | 40.0% |
| ! | CTTCTGGAAATTTGCGTATC+AGG | - | chr5.1:3894450-3894469 | None:intergenic | 40.0% |
| ! | GAGAGTGTAACTACAAAGAG+AGG | - | chr5.1:3895260-3895279 | None:intergenic | 40.0% |
| ! | GTATCGGTCGAAAATTTGAC+CGG | - | chr5.1:3892620-3892639 | None:intergenic | 40.0% |
| ! | TCCCCATCGTATCTTACTTT+TGG | - | chr5.1:3894248-3894267 | None:intergenic | 40.0% |
| ! | TGATCCTAAAGTGCCCATTA+AGG | + | chr5.1:3895703-3895722 | MS.gene015573:CDS | 40.0% |
| !! | ACTTTAGGTTCTAAAGCCCA+TGG | + | chr5.1:3893874-3893893 | MS.gene015573:intron | 40.0% |
| !! | ATGGGCACTTTAGGATCATT+AGG | - | chr5.1:3895701-3895720 | None:intergenic | 40.0% |
| !! | CACTTTAGGATCATTAGGGT+AGG | - | chr5.1:3895696-3895715 | None:intergenic | 40.0% |
| !! | CTTTAGGTTCTAAAGCCCAT+GGG | + | chr5.1:3893875-3893894 | MS.gene015573:intron | 40.0% |
| !! | TCCCACGAAAAAGCTGTTTT+AGG | - | chr5.1:3895739-3895758 | None:intergenic | 40.0% |
| !! | TGGGCACTTTAGGATCATTA+GGG | - | chr5.1:3895700-3895719 | None:intergenic | 40.0% |
| !! | TGTTAGCTTTCATGTCCACA+TGG | - | chr5.1:3894196-3894215 | None:intergenic | 40.0% |
| !!! | GACCTAAAACAGCTTTTTCG+TGG | + | chr5.1:3895734-3895753 | MS.gene015573:CDS | 40.0% |
| AAGATGGGCATTAGTCAGCT+TGG | - | chr5.1:3895921-3895940 | None:intergenic | 45.0% | |
| ACGAGTCCTACCAATTCTTG+TGG | + | chr5.1:3895320-3895339 | MS.gene015573:intron | 45.0% | |
| ATACCCATCAACCACAAGAG+AGG | - | chr5.1:3894078-3894097 | None:intergenic | 45.0% | |
| ATCGAGCATAGCAGCAAACA+AGG | + | chr5.1:3892562-3892581 | MS.gene015573:CDS | 45.0% | |
| ATTAGTCAGCTTGGTCCTCT+TGG | - | chr5.1:3895912-3895931 | None:intergenic | 45.0% | |
| CATATGGGACCCACAAGAAT+TGG | - | chr5.1:3895333-3895352 | None:intergenic | 45.0% | |
| CGAGTCCTACCAATTCTTGT+GGG | + | chr5.1:3895321-3895340 | MS.gene015573:intron | 45.0% | |
| CTACTAACACTGCAAAGAGG+AGG | + | chr5.1:3895822-3895841 | MS.gene015573:CDS | 45.0% | |
| CTCTTTGCAGTGTTAGTAGC+AGG | - | chr5.1:3895821-3895840 | None:intergenic | 45.0% | |
| CTGAAAAAGCTCCGGAAGAT+GGG | - | chr5.1:3895936-3895955 | None:intergenic | 45.0% | |
| CTGACGAGGACATACAACTT+AGG | - | chr5.1:3893023-3893042 | None:intergenic | 45.0% | |
| CTGCTACTAACACTGCAAAG+AGG | + | chr5.1:3895819-3895838 | MS.gene015573:CDS | 45.0% | |
| GCAATTCCTCCTATGACAAG+AGG | + | chr5.1:3893642-3893661 | MS.gene015573:intron | 45.0% | |
| GCTGTCCAACTTTGATTCAC+AGG | + | chr5.1:3895661-3895680 | MS.gene015573:CDS | 45.0% | |
| TAGGTACCTCTTGTCATAGG+AGG | - | chr5.1:3893651-3893670 | None:intergenic | 45.0% | |
| TATACTCAGATGACTCGCTG+TGG | + | chr5.1:3895514-3895533 | MS.gene015573:intron | 45.0% | |
| TCTGAAAAAGCTCCGGAAGA+TGG | - | chr5.1:3895937-3895956 | None:intergenic | 45.0% | |
| ! | AGAGAGGGTGCATATACACT+TGG | - | chr5.1:3895244-3895263 | None:intergenic | 45.0% |
| ! | TCCACCTTAATGGGCACTTT+AGG | - | chr5.1:3895710-3895729 | None:intergenic | 45.0% |
| ! | TCCTAAAGTGCCCATTAAGG+TGG | + | chr5.1:3895706-3895725 | MS.gene015573:CDS | 45.0% |
| !! | ATAGGCTTTGAAAGGTGGCA+GGG | + | chr5.1:3895628-3895647 | MS.gene015573:intron | 45.0% |
| !! | TATAGGCTTTGAAAGGTGGC+AGG | + | chr5.1:3895627-3895646 | MS.gene015573:intron | 45.0% |
| !!! | AGGCTTTTTTTGGTAGTGGC+CGG | - | chr5.1:3893101-3893120 | None:intergenic | 45.0% |
| !! | ATAAATTAATAATGTTTAAT+TGG | + | chr5.1:3893695-3893714 | MS.gene015573:intron | 5.0% |
| !! | ATTAAACATTATTAATTTAT+TGG | - | chr5.1:3893695-3893714 | None:intergenic | 5.0% |
| !! | TTAAACATTATTAATTTATT+GGG | - | chr5.1:3893694-3893713 | None:intergenic | 5.0% |
| ACAGGGATCCACCATTAACC+CGG | + | chr5.1:3893756-3893775 | MS.gene015573:intron | 50.0% | |
| AGGGAGGAACGTGAATACTC+AGG | - | chr5.1:3894890-3894909 | None:intergenic | 50.0% | |
| ATCAACCACAAGAGAGGTCC+GGG | - | chr5.1:3894072-3894091 | None:intergenic | 50.0% | |
| CATCAACCACAAGAGAGGTC+CGG | - | chr5.1:3894073-3894092 | None:intergenic | 50.0% | |
| CGCTTCATTTGAGCTCCAAC+AGG | - | chr5.1:3892680-3892699 | None:intergenic | 50.0% | |
| CTCAGAGAAGCCGAGACTTT+GGG | - | chr5.1:3895208-3895227 | None:intergenic | 50.0% | |
| GCTGACTAATGCCCATCTTC+CGG | + | chr5.1:3895922-3895941 | MS.gene015573:CDS | 50.0% | |
| GGACCTCTCTTGTGGTTGAT+GGG | + | chr5.1:3894072-3894091 | MS.gene015573:intron | 50.0% | |
| GTTGTATGTCCTCGTCAGCT+TGG | + | chr5.1:3893025-3893044 | MS.gene015573:intron | 50.0% | |
| TCAGCTTGGCTCAGTTGGTT+GGG | + | chr5.1:3893039-3893058 | MS.gene015573:intron | 50.0% | |
| TCTCAGAGAAGCCGAGACTT+TGG | - | chr5.1:3895209-3895228 | None:intergenic | 50.0% | |
| TGAAAGGTGGCAGGGAGATT+TGG | + | chr5.1:3895636-3895655 | MS.gene015573:CDS | 50.0% | |
| TGGGACCCACAAGAATTGGT+AGG | - | chr5.1:3895329-3895348 | None:intergenic | 50.0% | |
| TGTGCCAAATGCTCTTGCTC+CGG | + | chr5.1:3892598-3892617 | MS.gene015573:CDS | 50.0% | |
| ! | AGGAGTGCAGCACAAATGGA+AGG | + | chr5.1:3895842-3895861 | MS.gene015573:CDS | 50.0% |
| ! | GACTCGGCAGGCTTTAACAT+TGG | + | chr5.1:3894151-3894170 | MS.gene015573:intron | 50.0% |
| !! | CTTCTCTGAGACAAGGCACA+AGG | + | chr5.1:3895218-3895237 | MS.gene015573:intron | 50.0% |
| !! | GTTAATGGTGGATCCCTGTG+AGG | - | chr5.1:3893755-3893774 | None:intergenic | 50.0% |
| !! | TTGACCGGAGCAAGAGCATT+TGG | - | chr5.1:3892605-3892624 | None:intergenic | 50.0% |
| !!! | GCTTTTTTTGGTAGTGGCCG+GGG | - | chr5.1:3893099-3893118 | None:intergenic | 50.0% |
| !!! | GGCTTTTTTTGGTAGTGGCC+GGG | - | chr5.1:3893100-3893119 | None:intergenic | 50.0% |
| CGGACCTCTCTTGTGGTTGA+TGG | + | chr5.1:3894071-3894090 | MS.gene015573:intron | 55.0% | |
| GAGAAGCCGAGACTTTGGGT+AGG | - | chr5.1:3895204-3895223 | None:intergenic | 55.0% | |
| GTCAGCTTGGCTCAGTTGGT+TGG | + | chr5.1:3893038-3893057 | MS.gene015573:intron | 55.0% | |
| ! | GAGGAGGAGTGCAGCACAAA+TGG | + | chr5.1:3895838-3895857 | MS.gene015573:CDS | 55.0% |
| !! | GTCTCGGCTTCTCTGAGACA+AGG | + | chr5.1:3895211-3895230 | MS.gene015573:intron | 55.0% |
| ACCACAAGAGAGGTCCGGGT+TGG | - | chr5.1:3894068-3894087 | None:intergenic | 60.0% | |
| CATGGTCGGGGTTCAAACCC+CGG | + | chr5.1:3893079-3893098 | MS.gene015573:intron | 60.0% | |
| CCAACTGAGCCAAGCTGACG+AGG | - | chr5.1:3893037-3893056 | None:intergenic | 60.0% | |
| CCTCGTCAGCTTGGCTCAGT+TGG | + | chr5.1:3893034-3893053 | MS.gene015573:intron | 60.0% | |
| !! | GAGGTCCGGGTTGGCTGAAA+AGG | - | chr5.1:3894059-3894078 | None:intergenic | 60.0% |
| GCCAACCCGGACCTCTCTTG+TGG | + | chr5.1:3894064-3894083 | MS.gene015573:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 3892500 | 3895973 | 3892500 | ID=MS.gene015573 |
| chr5.1 | mRNA | 3892500 | 3895973 | 3892500 | ID=MS.gene015573.t1;Parent=MS.gene015573 |
| chr5.1 | exon | 3892500 | 3892721 | 3892500 | ID=MS.gene015573.t1.exon1;Parent=MS.gene015573.t1 |
| chr5.1 | CDS | 3892500 | 3892721 | 3892500 | ID=cds.MS.gene015573.t1;Parent=MS.gene015573.t1 |
| chr5.1 | exon | 3894152 | 3894283 | 3894152 | ID=MS.gene015573.t1.exon2;Parent=MS.gene015573.t1 |
| chr5.1 | CDS | 3894152 | 3894283 | 3894152 | ID=cds.MS.gene015573.t1;Parent=MS.gene015573.t1 |
| chr5.1 | exon | 3894409 | 3894525 | 3894409 | ID=MS.gene015573.t1.exon3;Parent=MS.gene015573.t1 |
| chr5.1 | CDS | 3894409 | 3894525 | 3894409 | ID=cds.MS.gene015573.t1;Parent=MS.gene015573.t1 |
| chr5.1 | exon | 3895632 | 3895973 | 3895632 | ID=MS.gene015573.t1.exon4;Parent=MS.gene015573.t1 |
| chr5.1 | CDS | 3895632 | 3895973 | 3895632 | ID=cds.MS.gene015573.t1;Parent=MS.gene015573.t1 |
| Gene Sequence |
| Protein sequence |
