Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45398.t1 | XP_013456979.1 | 98.7 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.00E+00 | 1233.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45398.t1 | Q9SGN6 | 62.3 | 615 | 211 | 9 | 16 | 620 | 9 | 612 | 5.7e-216 | 751.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45398.t1 | A0A072UYS7 | 98.7 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0e+00 | 1233.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene45398 | 0.80037 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004330 | MS.gene45398 | PPI |
| MS.gene058592 | MS.gene45398 | PPI |
| MS.gene015641 | MS.gene45398 | PPI |
| MS.gene45398 | MS.gene62676 | PPI |
| MS.gene002651 | MS.gene45398 | PPI |
| MS.gene45398 | MS.gene95833 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45398.t1 | MTR_4g088500 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1263 |
| MS.gene45398.t1 | MTR_7g116350 | 70.607 | 626 | 44 | 9 | 2 | 620 | 316 | 808 | 0.0 | 798 |
| MS.gene45398.t1 | MTR_2g005730 | 52.658 | 602 | 261 | 9 | 21 | 614 | 11 | 596 | 0.0 | 614 |
| MS.gene45398.t1 | MTR_8g095090 | 51.244 | 603 | 273 | 9 | 20 | 617 | 8 | 594 | 0.0 | 572 |
| MS.gene45398.t1 | MTR_8g095090 | 51.810 | 525 | 236 | 7 | 96 | 617 | 1 | 511 | 6.68e-175 | 507 |
| MS.gene45398.t1 | MTR_8g097210 | 41.491 | 617 | 320 | 11 | 25 | 611 | 11 | 616 | 5.19e-160 | 473 |
| MS.gene45398.t1 | MTR_3g084930 | 40.492 | 610 | 335 | 9 | 23 | 611 | 15 | 617 | 2.08e-156 | 463 |
| MS.gene45398.t1 | MTR_8g095110 | 43.377 | 604 | 288 | 12 | 21 | 616 | 12 | 569 | 7.98e-154 | 455 |
| MS.gene45398.t1 | MTR_8g095150 | 41.068 | 599 | 290 | 15 | 21 | 613 | 12 | 553 | 3.69e-144 | 429 |
| MS.gene45398.t1 | MTR_8g097210 | 42.561 | 531 | 281 | 8 | 96 | 611 | 1 | 522 | 1.63e-143 | 427 |
| MS.gene45398.t1 | MTR_8g095140 | 40.164 | 610 | 304 | 12 | 21 | 613 | 12 | 577 | 1.51e-139 | 419 |
| MS.gene45398.t1 | MTR_8g105700 | 40.436 | 596 | 300 | 9 | 22 | 611 | 6 | 552 | 6.93e-137 | 411 |
| MS.gene45398.t1 | MTR_2g005730 | 52.381 | 399 | 173 | 6 | 22 | 414 | 12 | 399 | 2.53e-132 | 395 |
| MS.gene45398.t1 | MTR_2g017740 | 38.602 | 601 | 297 | 12 | 25 | 611 | 22 | 564 | 1.95e-127 | 387 |
| MS.gene45398.t1 | MTR_8g095130 | 41.734 | 496 | 250 | 10 | 127 | 619 | 12 | 471 | 5.12e-115 | 352 |
| MS.gene45398.t1 | MTR_4g027860 | 42.241 | 348 | 170 | 6 | 273 | 611 | 79 | 404 | 1.23e-78 | 255 |
| MS.gene45398.t1 | MTR_4g027880 | 38.854 | 157 | 90 | 2 | 22 | 174 | 11 | 165 | 1.85e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45398.t1 | AT1G28380 | 62.276 | 615 | 211 | 9 | 16 | 620 | 9 | 612 | 0.0 | 764 |
| MS.gene45398.t1 | AT4G24290 | 51.316 | 608 | 270 | 9 | 21 | 619 | 10 | 600 | 0.0 | 602 |
| MS.gene45398.t1 | AT4G24290 | 51.316 | 608 | 270 | 9 | 21 | 619 | 10 | 600 | 0.0 | 602 |
| MS.gene45398.t1 | AT1G14780 | 38.636 | 616 | 344 | 13 | 23 | 611 | 10 | 618 | 1.16e-136 | 413 |
| MS.gene45398.t1 | AT1G29690 | 38.833 | 600 | 290 | 11 | 25 | 611 | 24 | 559 | 2.64e-133 | 402 |
| MS.gene45398.t1 | AT4G24290 | 48.961 | 337 | 153 | 6 | 21 | 348 | 10 | 336 | 3.56e-102 | 314 |
Find 151 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGACAAAATTAAGCATTT+TGG | 0.150769 | 4.4:-24389595 | None:intergenic |
| TGTGATCTTCTGAAATTTCT+AGG | 0.199569 | 4.4:-24389182 | None:intergenic |
| CACGGTATTAACATAAAGTT+TGG | 0.221178 | 4.4:-24388837 | None:intergenic |
| GTCACTTCAGTTCACTCTTA+TGG | 0.231370 | 4.4:+24388811 | MS.gene45398:CDS |
| ACTAAGAGCCTTGCCTTTGA+TGG | 0.266531 | 4.4:+24387387 | MS.gene45398:CDS |
| CAGAGGATCCACCAGGATAT+TGG | 0.288457 | 4.4:+24389640 | MS.gene45398:CDS |
| CAGCATCTTTCAGAGGTTCC+AGG | 0.308912 | 4.4:+24389156 | MS.gene45398:CDS |
| TTAATAGATAAGGGAACATT+AGG | 0.309328 | 4.4:-24386545 | None:intergenic |
| GGCTATATCAGGAAAATTAA+AGG | 0.311318 | 4.4:+24388040 | MS.gene45398:CDS |
| TGATGAAGTTCTTCTATTGC+AGG | 0.314788 | 4.4:-24388695 | None:intergenic |
| TTCAGGTTCATTGAAAAGTA+TGG | 0.316699 | 4.4:+24387852 | MS.gene45398:intron |
| GTTGAGAGCCACTGGTTATA+AGG | 0.316965 | 4.4:-24388434 | None:intergenic |
| TATTCGACCATAAGTATAAA+AGG | 0.318647 | 4.4:+24388777 | MS.gene45398:CDS |
| TTCAATAAGCAGGTTGATTC+GGG | 0.318983 | 4.4:+24389063 | MS.gene45398:intron |
| CTGAATTCTGTCCCAGGAAA+TGG | 0.330279 | 4.4:+24388512 | MS.gene45398:CDS |
| AGATGTAGACTCATCCATTC+TGG | 0.349924 | 4.4:-24389307 | None:intergenic |
| GTCCATCCTGCGGCTATATC+AGG | 0.349930 | 4.4:+24388029 | MS.gene45398:CDS |
| TCACTTCAGTTCACTCTTAT+GGG | 0.350996 | 4.4:+24388812 | MS.gene45398:CDS |
| TCAACTTTAGATTGTTTCTC+AGG | 0.363374 | 4.4:-24389522 | None:intergenic |
| TCGTAGTAGCCTCGGCCATC+TGG | 0.365164 | 4.4:-24389225 | None:intergenic |
| CGGCCATCTGGTTCGTCAAT+AGG | 0.368985 | 4.4:-24389213 | None:intergenic |
| AAATGTCATATCAATGTCTT+TGG | 0.369995 | 4.4:+24388472 | MS.gene45398:CDS |
| AAAGACATTGATATGACATT+TGG | 0.370826 | 4.4:-24388470 | None:intergenic |
| TTTCAATAAGCAGGTTGATT+CGG | 0.374923 | 4.4:+24389062 | MS.gene45398:intron |
| TTGGTTTGAGGTTAAGCTAA+TGG | 0.376476 | 4.4:+24389344 | MS.gene45398:CDS |
| GGAGCCCTTGTTGGCACAGG+TGG | 0.377561 | 4.4:-24389573 | None:intergenic |
| TCGGGAAACCGGCCGGTAAC+AGG | 0.378523 | 4.4:+24389081 | MS.gene45398:CDS |
| AGAGGATCCACCAGGATATT+GGG | 0.391881 | 4.4:+24389641 | MS.gene45398:CDS |
| TGTCGAACATGCTATTGAAT+TGG | 0.395267 | 4.4:-24387332 | None:intergenic |
| TGGTTTGAGGTTAAGCTAAT+GGG | 0.397784 | 4.4:+24389345 | MS.gene45398:CDS |
| GAATTCAGTAATGAAGTAAT+AGG | 0.399717 | 4.4:-24388497 | None:intergenic |
| TCAACCTCATCTAGAAAATC+AGG | 0.407263 | 4.4:+24389450 | MS.gene45398:CDS |
| TGTGACAAAGGCTTGGTTTG+AGG | 0.418183 | 4.4:+24389332 | MS.gene45398:CDS |
| AGCAGGTTGATTCGGGAAAC+CGG | 0.418321 | 4.4:+24389070 | MS.gene45398:intron |
| GATGCTGAAGATGGATTGAT+AGG | 0.420463 | 4.4:-24389140 | None:intergenic |
| ATGGTACACACGTAGTTGTT+GGG | 0.421463 | 4.4:+24387871 | MS.gene45398:CDS |
| CTTAGTGGAAGCTGCATCCC+TGG | 0.425444 | 4.4:-24387370 | None:intergenic |
| GGATGATCATACAAAGCTTA+GGG | 0.425872 | 4.4:+24388167 | MS.gene45398:intron |
| GACATTTGGAGACTGTGATA+TGG | 0.427915 | 4.4:-24388456 | None:intergenic |
| CAATATCCTGGTGGATCCTC+TGG | 0.428546 | 4.4:-24389639 | None:intergenic |
| CGTAGTTGTTGGGGTGAAGA+TGG | 0.431793 | 4.4:+24387881 | MS.gene45398:CDS |
| TTATCAGACTTAATAGATAA+GGG | 0.435251 | 4.4:-24386554 | None:intergenic |
| GCTTTCTCAGCTGCTAATTG+AGG | 0.435446 | 4.4:-24386389 | None:intergenic |
| ACTAATAGCTATGGAAATGC+AGG | 0.435774 | 4.4:+24386359 | MS.gene45398:CDS |
| CGACAATGGGCACCGATGTA+TGG | 0.437293 | 4.4:+24388740 | MS.gene45398:CDS |
| TTTATCAGACTTAATAGATA+AGG | 0.439387 | 4.4:-24386555 | None:intergenic |
| TTATCTATTAAGTCTGATAA+AGG | 0.439839 | 4.4:+24386557 | MS.gene45398:CDS |
| TTGGGAGCCCTTGTTGGCAC+AGG | 0.446071 | 4.4:-24389576 | None:intergenic |
| AGGATGATCATACAAAGCTT+AGG | 0.446411 | 4.4:+24388166 | MS.gene45398:intron |
| AACAAACCTCCGTCCCTTGT+TGG | 0.451722 | 4.4:+24388201 | MS.gene45398:CDS |
| AACAGACAACTATCATTGTC+GGG | 0.452760 | 4.4:+24387294 | MS.gene45398:CDS |
| ACTTACTCGGCAAGAGCAGC+GGG | 0.456388 | 4.4:-24387501 | None:intergenic |
| AACAGGTATTCGTTTATACT+TGG | 0.457606 | 4.4:+24389098 | MS.gene45398:CDS |
| ATCAAAGGCAAGGCTCTTAG+TGG | 0.462014 | 4.4:-24387385 | None:intergenic |
| GTTAATAATACTAATAGCTA+TGG | 0.462044 | 4.4:+24386350 | MS.gene45398:CDS |
| AACCTCCGTCCCTTGTTGGC+AGG | 0.463366 | 4.4:+24388205 | MS.gene45398:CDS |
| CTGGAGCTATTGTATTGTAC+AGG | 0.472485 | 4.4:-24389288 | None:intergenic |
| ACGGTATTAACATAAAGTTT+GGG | 0.475299 | 4.4:-24388836 | None:intergenic |
| CTGATAAAGGTGATTGTACC+AGG | 0.476222 | 4.4:+24386570 | MS.gene45398:CDS |
| CATCTATTGTGACAAAGGCT+TGG | 0.480707 | 4.4:+24389325 | MS.gene45398:CDS |
| GTTTCAATTACCACGACAAT+GGG | 0.481104 | 4.4:+24388727 | MS.gene45398:CDS |
| TATAAACGAATACCTGTTAC+CGG | 0.485389 | 4.4:-24389093 | None:intergenic |
| GAGAAAGCTGTGAGTGTGAT+TGG | 0.485451 | 4.4:+24386404 | MS.gene45398:CDS |
| CCTCTGAAAGATGCTGAAGA+TGG | 0.486026 | 4.4:-24389149 | None:intergenic |
| CGAAAATTCGCAGATCAGAA+TGG | 0.487617 | 4.4:+24389418 | MS.gene45398:CDS |
| CCAGGATATTGGGTTGTCAC+TGG | 0.487824 | 4.4:+24389651 | MS.gene45398:CDS |
| TATGGTACACACGTAGTTGT+TGG | 0.495177 | 4.4:+24387870 | MS.gene45398:CDS |
| GTGGCCCACCTGTGCCAACA+AGG | 0.495408 | 4.4:+24389568 | MS.gene45398:CDS |
| CAACAGACAACTATCATTGT+CGG | 0.500149 | 4.4:+24387293 | MS.gene45398:CDS |
| AGAGCCTTGCCTTTGATGGA+TGG | 0.511034 | 4.4:+24387391 | MS.gene45398:CDS |
| GGTATTCGTTTATACTTGGA+AGG | 0.511213 | 4.4:+24389102 | MS.gene45398:CDS |
| AGCAATTTCTGCAGTTCAGT+CGG | 0.511584 | 4.4:-24387954 | None:intergenic |
| GAGCCCTTGTTGGCACAGGT+GGG | 0.513246 | 4.4:-24389572 | None:intergenic |
| GAAAATTCGCAGATCAGAAT+GGG | 0.514979 | 4.4:+24389419 | MS.gene45398:CDS |
| TAGTAAGCATTTCTGTTCGA+AGG | 0.519900 | 4.4:+24388390 | MS.gene45398:CDS |
| TTACAATTGGCCTGCCAACA+AGG | 0.520191 | 4.4:-24388215 | None:intergenic |
| GGTGCAAAGTTATGTGTAGA+AGG | 0.521969 | 4.4:+24389672 | MS.gene45398:CDS |
| AGAGCCACTGGTTATAAGGT+TGG | 0.524639 | 4.4:-24388430 | None:intergenic |
| TAGCTATGGAAATGCAGGGT+TGG | 0.526822 | 4.4:+24386364 | MS.gene45398:CDS |
| TCTCAGGTGAATGCAATCCT+TGG | 0.530122 | 4.4:-24389506 | None:intergenic |
| GAAAACATGCTCCACTTCAC+TGG | 0.533461 | 4.4:-24389249 | None:intergenic |
| AGTAAGCATTTCTGTTCGAA+GGG | 0.537776 | 4.4:+24388391 | MS.gene45398:CDS |
| GACACAAAGGAAATGGTAAG+AGG | 0.538834 | 4.4:+24389615 | MS.gene45398:CDS |
| ATAAACTCGGCAATTTATCA+TGG | 0.539597 | 4.4:+24389546 | MS.gene45398:CDS |
| GATTCTCTGCTTGCAAGTCA+AGG | 0.541130 | 4.4:+24386456 | MS.gene45398:CDS |
| TAATAGATAAGGGAACATTA+GGG | 0.541232 | 4.4:-24386544 | None:intergenic |
| CCATCTTCAGCATCTTTCAG+AGG | 0.545066 | 4.4:+24389149 | MS.gene45398:CDS |
| TTGTCGGGAAAGATTCCATC+CGG | 0.552924 | 4.4:+24387309 | MS.gene45398:CDS |
| AGCATTTCTGTTCGAAGGGG+AGG | 0.555180 | 4.4:+24388395 | MS.gene45398:CDS |
| ACAATAGTAGTTCAAATACA+AGG | 0.557794 | 4.4:+24386492 | MS.gene45398:CDS |
| GGAAGAAGGAATTACCTTCA+CGG | 0.561197 | 4.4:-24388855 | None:intergenic |
| ACAATACAATAGCTCCAGAA+TGG | 0.564872 | 4.4:+24389293 | MS.gene45398:CDS |
| AGTTTCAATTACCACGACAA+TGG | 0.566996 | 4.4:+24388726 | MS.gene45398:CDS |
| TCTGAAATTTCTAGGACACC+TGG | 0.574524 | 4.4:-24389174 | None:intergenic |
| GTAGTTGTTGGGGTGAAGAT+GGG | 0.574754 | 4.4:+24387882 | MS.gene45398:CDS |
| ATGCTATTGAATTGGCCGGA+TGG | 0.576725 | 4.4:-24387324 | None:intergenic |
| CCAGTGACAACCCAATATCC+TGG | 0.577834 | 4.4:-24389651 | None:intergenic |
| GTGATATGGTTGAGAGCCAC+TGG | 0.578254 | 4.4:-24388442 | None:intergenic |
| TACAATTGGCCTGCCAACAA+GGG | 0.578423 | 4.4:-24388214 | None:intergenic |
| TACTTACTCGGCAAGAGCAG+CGG | 0.582249 | 4.4:-24387502 | None:intergenic |
| AGGTGGCAGAATCTCAATCA+AGG | 0.582915 | 4.4:+24389692 | MS.gene45398:CDS |
| AACGAATACCTGTTACCGGC+CGG | 0.583865 | 4.4:-24389089 | None:intergenic |
| TACTTATGGTCGAATACAAG+AGG | 0.584243 | 4.4:-24388770 | None:intergenic |
| TGTTATGAACCATCCATCAA+AGG | 0.584689 | 4.4:-24387400 | None:intergenic |
| GCAGCGGGGTTCCACGAACA+AGG | 0.585598 | 4.4:-24387486 | None:intergenic |
| TCATTACTGAATTCTGTCCC+AGG | 0.588026 | 4.4:+24388506 | MS.gene45398:CDS |
| GAGGACATCGGATCGAAACC+TGG | 0.588872 | 4.4:-24386588 | None:intergenic |
| GGTTGATTCGGGAAACCGGC+CGG | 0.595912 | 4.4:+24389074 | MS.gene45398:intron |
| ATGAGTGCAAAGCTTAGCCA+AGG | 0.599460 | 4.4:+24389489 | MS.gene45398:CDS |
| GCTACTACGAACCAGTGAAG+TGG | 0.605145 | 4.4:+24389238 | MS.gene45398:CDS |
| GTCTACATCTATTGTGACAA+AGG | 0.606707 | 4.4:+24389320 | MS.gene45398:CDS |
| TGGCCCACCTGTGCCAACAA+GGG | 0.608033 | 4.4:+24389569 | MS.gene45398:CDS |
| ATTGGCCTGCCAACAAGGGA+CGG | 0.613832 | 4.4:-24388210 | None:intergenic |
| TACATCGGTGCCCATTGTCG+TGG | 0.615922 | 4.4:-24388737 | None:intergenic |
| CTTAAGACTTGGATACTCAA+CGG | 0.619317 | 4.4:+24389386 | MS.gene45398:CDS |
| CTAATAGCTATGGAAATGCA+GGG | 0.619542 | 4.4:+24386360 | MS.gene45398:CDS |
| CAATGACCTGATTAAAAGTG+AGG | 0.619839 | 4.4:-24386607 | None:intergenic |
| TGAACCATCCATCAAAGGCA+AGG | 0.620613 | 4.4:-24387395 | None:intergenic |
| ATTCGCAGATCAGAATGGGA+TGG | 0.626214 | 4.4:+24389423 | MS.gene45398:CDS |
| AATTTCTGCAGTTCAGTCGG+CGG | 0.627237 | 4.4:-24387951 | None:intergenic |
| AGAGGTCCAGAGGATCCACC+AGG | 0.627751 | 4.4:+24389633 | MS.gene45398:CDS |
| CAAAGCTTAGGGGACTGCAC+AGG | 0.627915 | 4.4:+24388178 | MS.gene45398:CDS |
| TCACTGGTTCGTAGTAGCCT+CGG | 0.627996 | 4.4:-24389233 | None:intergenic |
| ACTTTATGTTAATACCGTGA+AGG | 0.630084 | 4.4:+24388841 | MS.gene45398:CDS |
| GGAAATGGTAAGAGGTCCAG+AGG | 0.631442 | 4.4:+24389623 | MS.gene45398:CDS |
| GATCCTATTGACGAACCAGA+TGG | 0.633830 | 4.4:+24389210 | MS.gene45398:CDS |
| ATTGACGAACCAGATGGCCG+AGG | 0.634066 | 4.4:+24389216 | MS.gene45398:CDS |
| GTTGTTGGGGTGAAGATGGG+AGG | 0.635084 | 4.4:+24387885 | MS.gene45398:CDS |
| ATAAGAGTGAACTGAAGTGA+CGG | 0.635680 | 4.4:-24388809 | None:intergenic |
| GAACATGCTATTGAATTGGC+CGG | 0.637602 | 4.4:-24387328 | None:intergenic |
| ATCTAAAGTTGACATAAACT+CGG | 0.638507 | 4.4:+24389533 | MS.gene45398:CDS |
| TTCCTGATATAGCCGCAGGA+TGG | 0.640932 | 4.4:-24388031 | None:intergenic |
| TTAGGGACAACAACACCAGA+AGG | 0.641365 | 4.4:-24386527 | None:intergenic |
| TGGTACACACGTAGTTGTTG+GGG | 0.641806 | 4.4:+24387872 | MS.gene45398:CDS |
| TTAAGCAATTAGCCGACGAG+AGG | 0.648867 | 4.4:+24387976 | MS.gene45398:CDS |
| AACTCGGCAATTTATCATGG+TGG | 0.652061 | 4.4:+24389549 | MS.gene45398:CDS |
| ATCCGCAGAAAACCTCTCGT+CGG | 0.653656 | 4.4:-24387988 | None:intergenic |
| GCTGTGAGTGTGATTGGTCA+AGG | 0.654752 | 4.4:+24386410 | MS.gene45398:CDS |
| GGCCTGCCAACAAGGGACGG+AGG | 0.659617 | 4.4:-24388207 | None:intergenic |
| GTAAGCATTTCTGTTCGAAG+GGG | 0.662446 | 4.4:+24388392 | MS.gene45398:CDS |
| TATGCCAACCTTATAACCAG+TGG | 0.666189 | 4.4:+24388426 | MS.gene45398:CDS |
| AAGTTCTAATGTCCATCCTG+CGG | 0.667092 | 4.4:+24388019 | MS.gene45398:CDS |
| CTGATTAAAAGTGAGGACAT+CGG | 0.670013 | 4.4:-24386600 | None:intergenic |
| CAATAGTAGTTCAAATACAA+GGG | 0.674868 | 4.4:+24386493 | MS.gene45398:CDS |
| GATGATCATACAAAGCTTAG+GGG | 0.687701 | 4.4:+24388168 | MS.gene45398:CDS |
| TAGTTGTCTGTTGAAATGCT+CGG | 0.693311 | 4.4:-24387283 | None:intergenic |
| GCTGAAGATGGATTGATAGG+TGG | 0.699756 | 4.4:-24389137 | None:intergenic |
| GTGACAACCCAATATCCTGG+TGG | 0.702984 | 4.4:-24389648 | None:intergenic |
| AGAGGCAGATCACCATACAT+CGG | 0.713318 | 4.4:-24388752 | None:intergenic |
| GCAAAGTTATGTGTAGAAGG+TGG | 0.744121 | 4.4:+24389675 | MS.gene45398:CDS |
| CTTACTCGGCAAGAGCAGCG+GGG | 0.766908 | 4.4:-24387500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATAAGATTTTTTTTTC+AGG | + | chr4.4:24388364-24388383 | MS.gene45398:intron | 10.0% |
| !!! | TATTTTAAACTAAATAAACA+TGG | + | chr4.4:24387826-24387845 | MS.gene45398:intron | 10.0% |
| !! | AAGAAATAAAGATTTAAGTA+AGG | - | chr4.4:24387759-24387778 | None:intergenic | 15.0% |
| !! | AGAAGAAAAAAATAAGTATT+GGG | - | chr4.4:24388607-24388626 | None:intergenic | 15.0% |
| !! | ATGAAACTATTGAATATAAT+TGG | - | chr4.4:24386714-24386733 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATACTATTAACT+TGG | - | chr4.4:24387817-24387836 | None:intergenic | 15.0% |
| !!! | TAATAACTATTTAAGAGTAT+TGG | - | chr4.4:24388886-24388905 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGGTAAATCAAC+AGG | - | chr4.4:24387134-24387153 | None:intergenic | 20.0% |
| !! | ACATATAAGTGATATGAAAA+GGG | + | chr4.4:24387187-24387206 | MS.gene45398:intron | 20.0% |
| !! | AGATCATGAAGATAAAAATA+TGG | + | chr4.4:24388088-24388107 | MS.gene45398:intron | 20.0% |
| !! | CAGAAGAAAAAAATAAGTAT+TGG | - | chr4.4:24388608-24388627 | None:intergenic | 20.0% |
| !! | GTTAATAATACTAATAGCTA+TGG | + | chr4.4:24386350-24386369 | MS.gene45398:CDS | 20.0% |
| !! | TAAAACTATAAGCATTCATT+TGG | + | chr4.4:24387647-24387666 | MS.gene45398:intron | 20.0% |
| !! | TGAAGATAAAAATATGGAAA+TGG | + | chr4.4:24388094-24388113 | MS.gene45398:intron | 20.0% |
| !! | TTATCAGACTTAATAGATAA+GGG | - | chr4.4:24386557-24386576 | None:intergenic | 20.0% |
| !! | TTATCTATTAAGTCTGATAA+AGG | + | chr4.4:24386557-24386576 | MS.gene45398:CDS | 20.0% |
| !! | TTCTTTGTTGAAATATATGT+TGG | + | chr4.4:24388636-24388655 | MS.gene45398:intron | 20.0% |
| !! | TTTATCAGACTTAATAGATA+AGG | - | chr4.4:24386558-24386577 | None:intergenic | 20.0% |
| !!! | ATATGAAAAGGGAAATTTTA+GGG | + | chr4.4:24387198-24387217 | MS.gene45398:intron | 20.0% |
| !!! | ATTATATGATTTTCTAGTTG+CGG | + | chr4.4:24386889-24386908 | MS.gene45398:intron | 20.0% |
| !!! | CAATACTTATTTTTTTCTTC+TGG | + | chr4.4:24388606-24388625 | MS.gene45398:intron | 20.0% |
| !!! | TAATTTTCATTTATGGTAGA+TGG | + | chr4.4:24387153-24387172 | MS.gene45398:intron | 20.0% |
| !!! | TGAAATTTTTTGTTTGCATT+TGG | + | chr4.4:24387048-24387067 | MS.gene45398:intron | 20.0% |
| ! | AAAAATGCTAACATCATTCT+TGG | - | chr4.4:24388250-24388269 | None:intergenic | 25.0% |
| ! | AAAGACATTGATATGACATT+TGG | - | chr4.4:24388473-24388492 | None:intergenic | 25.0% |
| ! | AAATGTCATATCAATGTCTT+TGG | + | chr4.4:24388472-24388491 | MS.gene45398:CDS | 25.0% |
| ! | ACAATAGTAGTTCAAATACA+AGG | + | chr4.4:24386492-24386511 | MS.gene45398:CDS | 25.0% |
| ! | ACGGTATTAACATAAAGTTT+GGG | - | chr4.4:24388839-24388858 | None:intergenic | 25.0% |
| ! | ACTATTGATAAAACACAGTT+AGG | - | chr4.4:24386869-24386888 | None:intergenic | 25.0% |
| ! | ATATCTTTGATCATGTTTGT+AGG | + | chr4.4:24388146-24388165 | MS.gene45398:intron | 25.0% |
| ! | ATCAATCTTCAAAAGTCAAA+AGG | - | chr4.4:24387102-24387121 | None:intergenic | 25.0% |
| ! | CAAAAGTCAAAAGGTTAAAA+AGG | - | chr4.4:24387093-24387112 | None:intergenic | 25.0% |
| ! | CAATAGTAGTTCAAATACAA+GGG | + | chr4.4:24386493-24386512 | MS.gene45398:CDS | 25.0% |
| ! | CTATTGAATATAATTGGTCA+TGG | - | chr4.4:24386708-24386727 | None:intergenic | 25.0% |
| ! | GAATTCAGTAATGAAGTAAT+AGG | - | chr4.4:24388500-24388519 | None:intergenic | 25.0% |
| ! | GACATATAAGTGATATGAAA+AGG | + | chr4.4:24387186-24387205 | MS.gene45398:intron | 25.0% |
| ! | GCATAACAATAATACTTACT+CGG | - | chr4.4:24387517-24387536 | None:intergenic | 25.0% |
| ! | TAATAGATAAGGGAACATTA+GGG | - | chr4.4:24386547-24386566 | None:intergenic | 25.0% |
| ! | TAGTGATCAGAATTCAATTA+TGG | - | chr4.4:24387019-24387038 | None:intergenic | 25.0% |
| ! | TATTCGACCATAAGTATAAA+AGG | + | chr4.4:24388777-24388796 | MS.gene45398:CDS | 25.0% |
| ! | TTAATAGATAAGGGAACATT+AGG | - | chr4.4:24386548-24386567 | None:intergenic | 25.0% |
| ! | TTCAATCAACTAGTTGAAAA+AGG | - | chr4.4:24386760-24386779 | None:intergenic | 25.0% |
| !! | ACTCATTCCTTTTATACTTA+TGG | - | chr4.4:24388787-24388806 | None:intergenic | 25.0% |
| !! | ATAGAAAAGTTATTGACTAG+TGG | + | chr4.4:24386803-24386822 | MS.gene45398:intron | 25.0% |
| !! | ATCTAAAGTTGACATAAACT+CGG | + | chr4.4:24389533-24389552 | MS.gene45398:CDS | 25.0% |
| !! | GATATGAAAAGGGAAATTTT+AGG | + | chr4.4:24387197-24387216 | MS.gene45398:intron | 25.0% |
| !! | TATGAAAAGGGAAATTTTAG+GGG | + | chr4.4:24387199-24387218 | MS.gene45398:intron | 25.0% |
| !! | TCGACAAAATTAAGCATTTT+GGG | - | chr4.4:24389597-24389616 | None:intergenic | 25.0% |
| !! | TTTTAGCAATTATAGAGCAA+GGG | - | chr4.4:24387632-24387651 | None:intergenic | 25.0% |
| !!! | AAAAAATAAGTATTGGGCAA+AGG | - | chr4.4:24388601-24388620 | None:intergenic | 25.0% |
| !!! | AAAGTACTTTTCTTAAGACT+TGG | + | chr4.4:24389375-24389394 | MS.gene45398:CDS | 25.0% |
| !!! | AAATGGATTTTTAAGTCATG+CGG | + | chr4.4:24388529-24388548 | MS.gene45398:CDS | 25.0% |
| !!! | TATGGTAGATGGTTTTTTTT+TGG | + | chr4.4:24387164-24387183 | MS.gene45398:intron | 25.0% |
| !!! | TATTTAAGAGTATTGGAACT+TGG | - | chr4.4:24388879-24388898 | None:intergenic | 25.0% |
| !!! | TTTTTTCACAGTTTCAGAAA+GGG | - | chr4.4:24387460-24387479 | None:intergenic | 25.0% |
| AAATCCTCCTATATGTTGAT+TGG | + | chr4.4:24387790-24387809 | MS.gene45398:intron | 30.0% | |
| AACAGGTATTCGTTTATACT+TGG | + | chr4.4:24389098-24389117 | MS.gene45398:CDS | 30.0% | |
| AAGAAATTGAAGCAGAAGTA+AGG | - | chr4.4:24386642-24386661 | None:intergenic | 30.0% | |
| AAGAACACACGATTATTTGT+AGG | + | chr4.4:24389003-24389022 | MS.gene45398:intron | 30.0% | |
| ACTTGTATAGCAAGAATGTA+AGG | + | chr4.4:24388921-24388940 | MS.gene45398:intron | 30.0% | |
| ACTTTATGTTAATACCGTGA+AGG | + | chr4.4:24388841-24388860 | MS.gene45398:CDS | 30.0% | |
| ATAAACTCGGCAATTTATCA+TGG | + | chr4.4:24389546-24389565 | MS.gene45398:CDS | 30.0% | |
| CACGGTATTAACATAAAGTT+TGG | - | chr4.4:24388840-24388859 | None:intergenic | 30.0% | |
| CTAAATAAACATGGTTCTTC+AGG | + | chr4.4:24387835-24387854 | MS.gene45398:intron | 30.0% | |
| GACTTAAAAATCCATTTCCT+GGG | - | chr4.4:24388526-24388545 | None:intergenic | 30.0% | |
| GGCTATATCAGGAAAATTAA+AGG | + | chr4.4:24388040-24388059 | MS.gene45398:CDS | 30.0% | |
| TATAAACGAATACCTGTTAC+CGG | - | chr4.4:24389096-24389115 | None:intergenic | 30.0% | |
| TGACTTAAAAATCCATTTCC+TGG | - | chr4.4:24388527-24388546 | None:intergenic | 30.0% | |
| TGTTCGACATGAAAAAATGT+TGG | + | chr4.4:24387346-24387365 | MS.gene45398:CDS | 30.0% | |
| TTACATATTTGTGCTGAACA+TGG | - | chr4.4:24386784-24386803 | None:intergenic | 30.0% | |
| TTTAGCAATTATAGAGCAAG+GGG | - | chr4.4:24387631-24387650 | None:intergenic | 30.0% | |
| ! | AAATCCTGATTTTCTAGATG+AGG | - | chr4.4:24389457-24389476 | None:intergenic | 30.0% |
| ! | AGTTGATATATTGAGCAAGT+TGG | + | chr4.4:24386836-24386855 | MS.gene45398:intron | 30.0% |
| ! | GTCGACAAAATTAAGCATTT+TGG | - | chr4.4:24389598-24389617 | None:intergenic | 30.0% |
| ! | GTTGAATGTTACTGCTATTT+AGG | - | chr4.4:24387702-24387721 | None:intergenic | 30.0% |
| ! | TAAGTAAGGCTTTTCATACA+AGG | - | chr4.4:24387745-24387764 | None:intergenic | 30.0% |
| ! | TCAACTTTAGATTGTTTCTC+AGG | - | chr4.4:24389525-24389544 | None:intergenic | 30.0% |
| ! | TTCAGGTTCATTGAAAAGTA+TGG | + | chr4.4:24387852-24387871 | MS.gene45398:intron | 30.0% |
| ! | TTGGAGTGACTTTTTACAAT+TGG | - | chr4.4:24388231-24388250 | None:intergenic | 30.0% |
| !! | GTTTTAGCAATTATAGAGCA+AGG | - | chr4.4:24387633-24387652 | None:intergenic | 30.0% |
| !! | TGTGATCTTCTGAAATTTCT+AGG | - | chr4.4:24389185-24389204 | None:intergenic | 30.0% |
| !! | TTTCAATAAGCAGGTTGATT+CGG | + | chr4.4:24389062-24389081 | MS.gene45398:intron | 30.0% |
| !!! | CTTTTTTCACAGTTTCAGAA+AGG | - | chr4.4:24387461-24387480 | None:intergenic | 30.0% |
| AACAGACAACTATCATTGTC+GGG | + | chr4.4:24387294-24387313 | MS.gene45398:CDS | 35.0% | |
| ACAATACAATAGCTCCAGAA+TGG | + | chr4.4:24389293-24389312 | MS.gene45398:CDS | 35.0% | |
| ACATGAAAAAATGTTGGTCC+AGG | + | chr4.4:24387352-24387371 | MS.gene45398:CDS | 35.0% | |
| ACTAATAGCTATGGAAATGC+AGG | + | chr4.4:24386359-24386378 | MS.gene45398:CDS | 35.0% | |
| ACTTGGTCCAATCAACATAT+AGG | - | chr4.4:24387800-24387819 | None:intergenic | 35.0% | |
| AGGATGATCATACAAAGCTT+AGG | + | chr4.4:24388166-24388185 | MS.gene45398:intron | 35.0% | |
| AGTAAGCATTTCTGTTCGAA+GGG | + | chr4.4:24388391-24388410 | MS.gene45398:CDS | 35.0% | |
| AGTTTCAATTACCACGACAA+TGG | + | chr4.4:24388726-24388745 | MS.gene45398:CDS | 35.0% | |
| ATAAGAGTGAACTGAAGTGA+CGG | - | chr4.4:24388812-24388831 | None:intergenic | 35.0% | |
| ATCAACCTGCTTATTGAAAC+AGG | - | chr4.4:24389061-24389080 | None:intergenic | 35.0% | |
| CAACAGACAACTATCATTGT+CGG | + | chr4.4:24387293-24387312 | MS.gene45398:CDS | 35.0% | |
| CAATGACCTGATTAAAAGTG+AGG | - | chr4.4:24386610-24386629 | None:intergenic | 35.0% | |
| CATGAAAAAATGTTGGTCCA+GGG | + | chr4.4:24387353-24387372 | MS.gene45398:CDS | 35.0% | |
| CTAATAGCTATGGAAATGCA+GGG | + | chr4.4:24386360-24386379 | MS.gene45398:CDS | 35.0% | |
| CTGATTAAAAGTGAGGACAT+CGG | - | chr4.4:24386603-24386622 | None:intergenic | 35.0% | |
| CTTAAGACTTGGATACTCAA+CGG | + | chr4.4:24389386-24389405 | MS.gene45398:CDS | 35.0% | |
| GAAAATTCGCAGATCAGAAT+GGG | + | chr4.4:24389419-24389438 | MS.gene45398:CDS | 35.0% | |
| GACGACTATTAACTAGAAGA+GGG | - | chr4.4:24387544-24387563 | None:intergenic | 35.0% | |
| GATGATCATACAAAGCTTAG+GGG | + | chr4.4:24388168-24388187 | MS.gene45398:CDS | 35.0% | |
| GGATGATCATACAAAGCTTA+GGG | + | chr4.4:24388167-24388186 | MS.gene45398:intron | 35.0% | |
| GGTATTCGTTTATACTTGGA+AGG | + | chr4.4:24389102-24389121 | MS.gene45398:CDS | 35.0% | |
| GTCTACATCTATTGTGACAA+AGG | + | chr4.4:24389320-24389339 | MS.gene45398:CDS | 35.0% | |
| GTTTCAATTACCACGACAAT+GGG | + | chr4.4:24388727-24388746 | MS.gene45398:CDS | 35.0% | |
| TACTTATGGTCGAATACAAG+AGG | - | chr4.4:24388773-24388792 | None:intergenic | 35.0% | |
| TAGTAAGCATTTCTGTTCGA+AGG | + | chr4.4:24388390-24388409 | MS.gene45398:CDS | 35.0% | |
| TAGTTGTCTGTTGAAATGCT+CGG | - | chr4.4:24387286-24387305 | None:intergenic | 35.0% | |
| TCAACCTCATCTAGAAAATC+AGG | + | chr4.4:24389450-24389469 | MS.gene45398:CDS | 35.0% | |
| TCAACCTGCTTATTGAAACA+GGG | - | chr4.4:24389060-24389079 | None:intergenic | 35.0% | |
| TCACTTCAGTTCACTCTTAT+GGG | + | chr4.4:24388812-24388831 | MS.gene45398:CDS | 35.0% | |
| TCATTAGATACGATTCATCG+TGG | + | chr4.4:24386953-24386972 | MS.gene45398:intron | 35.0% | |
| TGACGACTATTAACTAGAAG+AGG | - | chr4.4:24387545-24387564 | None:intergenic | 35.0% | |
| TGATGAAGTTCTTCTATTGC+AGG | - | chr4.4:24388698-24388717 | None:intergenic | 35.0% | |
| TGTCGAACATGCTATTGAAT+TGG | - | chr4.4:24387335-24387354 | None:intergenic | 35.0% | |
| TGTTATGAACCATCCATCAA+AGG | - | chr4.4:24387403-24387422 | None:intergenic | 35.0% | |
| TTGTAGGAATTAGTTAGCAC+TGG | + | chr4.4:24389019-24389038 | MS.gene45398:intron | 35.0% | |
| ! | GATTTTCTAGATGAGGTTGA+AGG | - | chr4.4:24389450-24389469 | None:intergenic | 35.0% |
| ! | GCTTAATTTTGTCGACACAA+AGG | + | chr4.4:24389602-24389621 | MS.gene45398:CDS | 35.0% |
| ! | TGGTTTGAGGTTAAGCTAAT+GGG | + | chr4.4:24389345-24389364 | MS.gene45398:CDS | 35.0% |
| ! | TTGGTTTGAGGTTAAGCTAA+TGG | + | chr4.4:24389344-24389363 | MS.gene45398:CDS | 35.0% |
| ! | TTTTGTCGACACAAAGGAAA+TGG | + | chr4.4:24389608-24389627 | MS.gene45398:CDS | 35.0% |
| !! | TTCAATAAGCAGGTTGATTC+GGG | + | chr4.4:24389063-24389082 | MS.gene45398:intron | 35.0% |
| AACTCGGCAATTTATCATGG+TGG | + | chr4.4:24389549-24389568 | MS.gene45398:CDS | 40.0% | |
| AAGTTCGACTGTTCGAGTAT+AGG | - | chr4.4:24388345-24388364 | None:intergenic | 40.0% | |
| AGAATAGATGCAAAGTGCAC+AGG | - | chr4.4:24388314-24388333 | None:intergenic | 40.0% | |
| AGATGTAGACTCATCCATTC+TGG | - | chr4.4:24389310-24389329 | None:intergenic | 40.0% | |
| AGCAATTTCTGCAGTTCAGT+CGG | - | chr4.4:24387957-24387976 | None:intergenic | 40.0% | |
| ATGGTACACACGTAGTTGTT+GGG | + | chr4.4:24387871-24387890 | MS.gene45398:CDS | 40.0% | |
| CAACACCAGAAGGAAAAACA+AGG | - | chr4.4:24386520-24386539 | None:intergenic | 40.0% | |
| CATCTATTGTGACAAAGGCT+TGG | + | chr4.4:24389325-24389344 | MS.gene45398:CDS | 40.0% | |
| CGAAAATTCGCAGATCAGAA+TGG | + | chr4.4:24389418-24389437 | MS.gene45398:CDS | 40.0% | |
| CTGATAAAGGTGATTGTACC+AGG | + | chr4.4:24386570-24386589 | MS.gene45398:CDS | 40.0% | |
| CTGGAGCTATTGTATTGTAC+AGG | - | chr4.4:24389291-24389310 | None:intergenic | 40.0% | |
| GAACATGCTATTGAATTGGC+CGG | - | chr4.4:24387331-24387350 | None:intergenic | 40.0% | |
| GACACAAAGGAAATGGTAAG+AGG | + | chr4.4:24389615-24389634 | MS.gene45398:CDS | 40.0% | |
| GACATTTGGAGACTGTGATA+TGG | - | chr4.4:24388459-24388478 | None:intergenic | 40.0% | |
| GCAAAGTTATGTGTAGAAGG+TGG | + | chr4.4:24389675-24389694 | MS.gene45398:CDS | 40.0% | |
| GGAAGAAGGAATTACCTTCA+CGG | - | chr4.4:24388858-24388877 | None:intergenic | 40.0% | |
| GGTGCAAAGTTATGTGTAGA+AGG | + | chr4.4:24389672-24389691 | MS.gene45398:CDS | 40.0% | |
| GTAAGCATTTCTGTTCGAAG+GGG | + | chr4.4:24388392-24388411 | MS.gene45398:CDS | 40.0% | |
| GTCACTTCAGTTCACTCTTA+TGG | + | chr4.4:24388811-24388830 | MS.gene45398:CDS | 40.0% | |
| TATGCCAACCTTATAACCAG+TGG | + | chr4.4:24388426-24388445 | MS.gene45398:CDS | 40.0% | |
| TATGGTACACACGTAGTTGT+TGG | + | chr4.4:24387870-24387889 | MS.gene45398:CDS | 40.0% | |
| TCATTACTGAATTCTGTCCC+AGG | + | chr4.4:24388506-24388525 | MS.gene45398:CDS | 40.0% | |
| TGGTCCAATCAACATATAGG+AGG | - | chr4.4:24387797-24387816 | None:intergenic | 40.0% | |
| ! | AAGTTCTAATGTCCATCCTG+CGG | + | chr4.4:24388019-24388038 | MS.gene45398:CDS | 40.0% |
| ! | AATTTTCCTGATATAGCCGC+AGG | - | chr4.4:24388038-24388057 | None:intergenic | 40.0% |
| ! | AGTTATTGACTAGTGGCAGA+TGG | + | chr4.4:24386810-24386829 | MS.gene45398:intron | 40.0% |
| !! | AAGGGAAATTTTAGGGGTGA+TGG | + | chr4.4:24387205-24387224 | MS.gene45398:intron | 40.0% |
| !! | AGGGAAATTTTAGGGGTGAT+GGG | + | chr4.4:24387206-24387225 | MS.gene45398:intron | 40.0% |
| !! | CGATGTCCTCACTTTTAATC+AGG | + | chr4.4:24386601-24386620 | MS.gene45398:CDS | 40.0% |
| !! | GAGTATTGGAACTTGGAAGA+AGG | - | chr4.4:24388872-24388891 | None:intergenic | 40.0% |
| !! | GATGCTGAAGATGGATTGAT+AGG | - | chr4.4:24389143-24389162 | None:intergenic | 40.0% |
| !! | TCTGAAATTTCTAGGACACC+TGG | - | chr4.4:24389177-24389196 | None:intergenic | 40.0% |
| !!! | ATTTTAGGGGTGATGGGATA+TGG | + | chr4.4:24387212-24387231 | MS.gene45398:intron | 40.0% |
| AATTTCTGCAGTTCAGTCGG+CGG | - | chr4.4:24387954-24387973 | None:intergenic | 45.0% | |
| ACTAAGAGCCTTGCCTTTGA+TGG | + | chr4.4:24387387-24387406 | MS.gene45398:CDS | 45.0% | |
| AGAGGATCCACCAGGATATT+GGG | + | chr4.4:24389641-24389660 | MS.gene45398:CDS | 45.0% | |
| AGAGGCAGATCACCATACAT+CGG | - | chr4.4:24388755-24388774 | None:intergenic | 45.0% | |
| AGGTGGCAGAATCTCAATCA+AGG | + | chr4.4:24389692-24389711 | MS.gene45398:CDS | 45.0% | |
| ATCAAAGGCAAGGCTCTTAG+TGG | - | chr4.4:24387388-24387407 | None:intergenic | 45.0% | |
| ATGAGTGCAAAGCTTAGCCA+AGG | + | chr4.4:24389489-24389508 | MS.gene45398:CDS | 45.0% | |
| ATGCTATTGAATTGGCCGGA+TGG | - | chr4.4:24387327-24387346 | None:intergenic | 45.0% | |
| ATTCGCAGATCAGAATGGGA+TGG | + | chr4.4:24389423-24389442 | MS.gene45398:CDS | 45.0% | |
| CAAAGGAAAACCAAAGTCGC+AGG | - | chr4.4:24388584-24388603 | None:intergenic | 45.0% | |
| CCATCTTCAGCATCTTTCAG+AGG | + | chr4.4:24389149-24389168 | MS.gene45398:CDS | 45.0% | |
| CTGAATTCTGTCCCAGGAAA+TGG | + | chr4.4:24388512-24388531 | MS.gene45398:CDS | 45.0% | |
| GAAAACATGCTCCACTTCAC+TGG | - | chr4.4:24389252-24389271 | None:intergenic | 45.0% | |
| GAGAAAGCTGTGAGTGTGAT+TGG | + | chr4.4:24386404-24386423 | MS.gene45398:CDS | 45.0% | |
| GATCCTATTGACGAACCAGA+TGG | + | chr4.4:24389210-24389229 | MS.gene45398:CDS | 45.0% | |
| GATTCTCTGCTTGCAAGTCA+AGG | + | chr4.4:24386456-24386475 | MS.gene45398:CDS | 45.0% | |
| GCAATTATAGAGCAAGGGGT+CGG | - | chr4.4:24387627-24387646 | None:intergenic | 45.0% | |
| GCTTTCTCAGCTGCTAATTG+AGG | - | chr4.4:24386392-24386411 | None:intergenic | 45.0% | |
| GTAGTTGTTGGGGTGAAGAT+GGG | + | chr4.4:24387882-24387901 | MS.gene45398:CDS | 45.0% | |
| TAGCTATGGAAATGCAGGGT+TGG | + | chr4.4:24386364-24386383 | MS.gene45398:CDS | 45.0% | |
| TCGACCCTGTTTCAATAAGC+AGG | + | chr4.4:24389053-24389072 | MS.gene45398:intron | 45.0% | |
| TCTCAGGTGAATGCAATCCT+TGG | - | chr4.4:24389509-24389528 | None:intergenic | 45.0% | |
| TGAACCATCCATCAAAGGCA+AGG | - | chr4.4:24387398-24387417 | None:intergenic | 45.0% | |
| TGGTAATACCACGCACTAGA+TGG | - | chr4.4:24386999-24387018 | None:intergenic | 45.0% | |
| TGGTACACACGTAGTTGTTG+GGG | + | chr4.4:24387872-24387891 | MS.gene45398:CDS | 45.0% | |
| TGTTAGATCCATCTAGTGCG+TGG | + | chr4.4:24386988-24387007 | MS.gene45398:intron | 45.0% | |
| TTAAGCAATTAGCCGACGAG+AGG | + | chr4.4:24387976-24387995 | MS.gene45398:CDS | 45.0% | |
| TTAGGGACAACAACACCAGA+AGG | - | chr4.4:24386530-24386549 | None:intergenic | 45.0% | |
| TTGTCGGGAAAGATTCCATC+CGG | + | chr4.4:24387309-24387328 | MS.gene45398:CDS | 45.0% | |
| ! | AAAAAGACGTGCCTTGTTCG+TGG | + | chr4.4:24387475-24387494 | MS.gene45398:CDS | 45.0% |
| ! | AGAGCCACTGGTTATAAGGT+TGG | - | chr4.4:24388433-24388452 | None:intergenic | 45.0% |
| ! | CCTCTGAAAGATGCTGAAGA+TGG | - | chr4.4:24389152-24389171 | None:intergenic | 45.0% |
| ! | GTTGAGAGCCACTGGTTATA+AGG | - | chr4.4:24388437-24388456 | None:intergenic | 45.0% |
| ! | TACAATTGGCCTGCCAACAA+GGG | - | chr4.4:24388217-24388236 | None:intergenic | 45.0% |
| ! | TGTGACAAAGGCTTGGTTTG+AGG | + | chr4.4:24389332-24389351 | MS.gene45398:CDS | 45.0% |
| ! | TTACAATTGGCCTGCCAACA+AGG | - | chr4.4:24388218-24388237 | None:intergenic | 45.0% |
| !! | GCTGAAGATGGATTGATAGG+TGG | - | chr4.4:24389140-24389159 | None:intergenic | 45.0% |
| !!! | AGGGACCTTGTTTTTCCTTC+TGG | + | chr4.4:24386512-24386531 | MS.gene45398:CDS | 45.0% |
| !! | TAAATGAAAATTAAAAAAAA+AGG | - | chr4.4:24387146-24387165 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAATTTTCATTTA+TGG | + | chr4.4:24387146-24387165 | MS.gene45398:intron | 5.0% |
| AACAAACCTCCGTCCCTTGT+TGG | + | chr4.4:24388201-24388220 | MS.gene45398:CDS | 50.0% | |
| AACGAATACCTGTTACCGGC+CGG | - | chr4.4:24389092-24389111 | None:intergenic | 50.0% | |
| AGAGCCTTGCCTTTGATGGA+TGG | + | chr4.4:24387391-24387410 | MS.gene45398:CDS | 50.0% | |
| AGCATTTCTGTTCGAAGGGG+AGG | + | chr4.4:24388395-24388414 | MS.gene45398:CDS | 50.0% | |
| ATCCGCAGAAAACCTCTCGT+CGG | - | chr4.4:24387991-24388010 | None:intergenic | 50.0% | |
| CAGAGGATCCACCAGGATAT+TGG | + | chr4.4:24389640-24389659 | MS.gene45398:CDS | 50.0% | |
| CAGCATCTTTCAGAGGTTCC+AGG | + | chr4.4:24389156-24389175 | MS.gene45398:CDS | 50.0% | |
| CCAGTGACAACCCAATATCC+TGG | - | chr4.4:24389654-24389673 | None:intergenic | 50.0% | |
| CGTAGTTGTTGGGGTGAAGA+TGG | + | chr4.4:24387881-24387900 | MS.gene45398:CDS | 50.0% | |
| GCTACTACGAACCAGTGAAG+TGG | + | chr4.4:24389238-24389257 | MS.gene45398:CDS | 50.0% | |
| GGAAATGGTAAGAGGTCCAG+AGG | + | chr4.4:24389623-24389642 | MS.gene45398:CDS | 50.0% | |
| GTGACAACCCAATATCCTGG+TGG | - | chr4.4:24389651-24389670 | None:intergenic | 50.0% | |
| GTGATATGGTTGAGAGCCAC+TGG | - | chr4.4:24388445-24388464 | None:intergenic | 50.0% | |
| TACTTACTCGGCAAGAGCAG+CGG | - | chr4.4:24387505-24387524 | None:intergenic | 50.0% | |
| TGAGTAGACACCTGCGACTT+TGG | + | chr4.4:24388571-24388590 | MS.gene45398:intron | 50.0% | |
| TTCCTGATATAGCCGCAGGA+TGG | - | chr4.4:24388034-24388053 | None:intergenic | 50.0% | |
| ! | CAATATCCTGGTGGATCCTC+TGG | - | chr4.4:24389642-24389661 | None:intergenic | 50.0% |
| ! | CCAGGATATTGGGTTGTCAC+TGG | + | chr4.4:24389651-24389670 | MS.gene45398:CDS | 50.0% |
| ! | GCTGTGAGTGTGATTGGTCA+AGG | + | chr4.4:24386410-24386429 | MS.gene45398:CDS | 50.0% |
| !! | AGCAGGTTGATTCGGGAAAC+CGG | + | chr4.4:24389070-24389089 | MS.gene45398:intron | 50.0% |
| !! | AGCATTTTGGGAGCCCTTGT+TGG | - | chr4.4:24389585-24389604 | None:intergenic | 50.0% |
| !! | TCACTGGTTCGTAGTAGCCT+CGG | - | chr4.4:24389236-24389255 | None:intergenic | 50.0% |
| ACTTACTCGGCAAGAGCAGC+GGG | - | chr4.4:24387504-24387523 | None:intergenic | 55.0% | |
| ATTGACGAACCAGATGGCCG+AGG | + | chr4.4:24389216-24389235 | MS.gene45398:CDS | 55.0% | |
| CAAAGCTTAGGGGACTGCAC+AGG | + | chr4.4:24388178-24388197 | MS.gene45398:CDS | 55.0% | |
| CTTAGTGGAAGCTGCATCCC+TGG | - | chr4.4:24387373-24387392 | None:intergenic | 55.0% | |
| GAGGACATCGGATCGAAACC+TGG | - | chr4.4:24386591-24386610 | None:intergenic | 55.0% | |
| GTCCATCCTGCGGCTATATC+AGG | + | chr4.4:24388029-24388048 | MS.gene45398:CDS | 55.0% | |
| GTTGTTGGGGTGAAGATGGG+AGG | + | chr4.4:24387885-24387904 | MS.gene45398:CDS | 55.0% | |
| ! | AGCCGACGAGAGGTTTTCTG+CGG | + | chr4.4:24387986-24388005 | MS.gene45398:CDS | 55.0% |
| ! | ATTGGCCTGCCAACAAGGGA+CGG | - | chr4.4:24388213-24388232 | None:intergenic | 55.0% |
| ! | CGGCCATCTGGTTCGTCAAT+AGG | - | chr4.4:24389216-24389235 | None:intergenic | 55.0% |
| ! | TACATCGGTGCCCATTGTCG+TGG | - | chr4.4:24388740-24388759 | None:intergenic | 55.0% |
| !! | CGACAATGGGCACCGATGTA+TGG | + | chr4.4:24388740-24388759 | MS.gene45398:CDS | 55.0% |
| AACCTCCGTCCCTTGTTGGC+AGG | + | chr4.4:24388205-24388224 | MS.gene45398:CDS | 60.0% | |
| AGAGGTCCAGAGGATCCACC+AGG | + | chr4.4:24389633-24389652 | MS.gene45398:CDS | 60.0% | |
| CTTACTCGGCAAGAGCAGCG+GGG | - | chr4.4:24387503-24387522 | None:intergenic | 60.0% | |
| GAGCCCTTGTTGGCACAGGT+GGG | - | chr4.4:24389575-24389594 | None:intergenic | 60.0% | |
| TCGTAGTAGCCTCGGCCATC+TGG | - | chr4.4:24389228-24389247 | None:intergenic | 60.0% | |
| TGGCCCACCTGTGCCAACAA+GGG | + | chr4.4:24389569-24389588 | MS.gene45398:CDS | 60.0% | |
| TTGGGAGCCCTTGTTGGCAC+AGG | - | chr4.4:24389579-24389598 | None:intergenic | 60.0% | |
| !! | GGTTGATTCGGGAAACCGGC+CGG | + | chr4.4:24389074-24389093 | MS.gene45398:intron | 60.0% |
| GCAGCGGGGTTCCACGAACA+AGG | - | chr4.4:24387489-24387508 | None:intergenic | 65.0% | |
| GGAGCCCTTGTTGGCACAGG+TGG | - | chr4.4:24389576-24389595 | None:intergenic | 65.0% | |
| GTGGCCCACCTGTGCCAACA+AGG | + | chr4.4:24389568-24389587 | MS.gene45398:CDS | 65.0% | |
| TCGGGAAACCGGCCGGTAAC+AGG | + | chr4.4:24389081-24389100 | MS.gene45398:CDS | 65.0% | |
| GGCCTGCCAACAAGGGACGG+AGG | - | chr4.4:24388210-24388229 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24386338 | 24389761 | 24386338 | ID=MS.gene45398 |
| chr4.4 | mRNA | 24386338 | 24389761 | 24386338 | ID=MS.gene45398.t1;Parent=MS.gene45398 |
| chr4.4 | exon | 24386338 | 24386622 | 24386338 | ID=MS.gene45398.t1.exon1;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24386338 | 24386622 | 24386338 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| chr4.4 | exon | 24387279 | 24387517 | 24387279 | ID=MS.gene45398.t1.exon2;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24387279 | 24387517 | 24387279 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| chr4.4 | exon | 24387857 | 24388061 | 24387857 | ID=MS.gene45398.t1.exon3;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24387857 | 24388061 | 24387857 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| chr4.4 | exon | 24388168 | 24388257 | 24388168 | ID=MS.gene45398.t1.exon4;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24388168 | 24388257 | 24388168 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| chr4.4 | exon | 24388386 | 24388569 | 24388386 | ID=MS.gene45398.t1.exon5;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24388386 | 24388569 | 24388386 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| chr4.4 | exon | 24388690 | 24388862 | 24388690 | ID=MS.gene45398.t1.exon6;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24388690 | 24388862 | 24388690 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| chr4.4 | exon | 24389075 | 24389761 | 24389075 | ID=MS.gene45398.t1.exon7;Parent=MS.gene45398.t1 |
| chr4.4 | CDS | 24389075 | 24389761 | 24389075 | ID=cds.MS.gene45398.t1;Parent=MS.gene45398.t1 |
| Gene Sequence |
| Protein sequence |
