Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015855.t1 | PNX54585.1 | 73.2 | 354 | 81 | 2 | 31 | 371 | 4 | 356 | 4.50E-119 | 438 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015855.t1 | Q9FHE1 | 33.8 | 195 | 121 | 2 | 115 | 301 | 264 | 458 | 1.1e-20 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015855.t1 | A0A2K3JKM3 | 73.2 | 354 | 81 | 2 | 31 | 371 | 4 | 356 | 3.3e-119 | 438.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066439 | MS.gene015855 | PPI |
| MS.gene029093 | MS.gene015855 | PPI |
| MS.gene97346 | MS.gene015855 | PPI |
| MS.gene90825 | MS.gene015855 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015855.t1 | MTR_7g088160 | 38.413 | 315 | 155 | 6 | 92 | 369 | 74 | 386 | 6.41e-61 | 201 |
| MS.gene015855.t1 | MTR_7g107340 | 40.476 | 294 | 137 | 5 | 84 | 369 | 69 | 332 | 9.46e-54 | 181 |
| MS.gene015855.t1 | MTR_4g063670 | 41.611 | 298 | 141 | 9 | 99 | 369 | 26 | 317 | 2.97e-52 | 176 |
| MS.gene015855.t1 | MTR_0867s0010 | 41.667 | 300 | 138 | 9 | 99 | 369 | 26 | 317 | 2.53e-48 | 166 |
| MS.gene015855.t1 | MTR_4g083510 | 36.928 | 306 | 161 | 8 | 91 | 369 | 18 | 318 | 3.54e-40 | 145 |
| MS.gene015855.t1 | MTR_7g114170 | 36.103 | 349 | 141 | 9 | 35 | 369 | 7 | 287 | 9.53e-39 | 140 |
| MS.gene015855.t1 | MTR_3g069460 | 47.619 | 147 | 74 | 3 | 99 | 242 | 26 | 172 | 1.81e-34 | 125 |
| MS.gene015855.t1 | MTR_1g051185 | 47.482 | 139 | 69 | 3 | 142 | 278 | 45 | 181 | 1.55e-31 | 120 |
| MS.gene015855.t1 | MTR_6g081150 | 37.288 | 236 | 77 | 8 | 86 | 321 | 12 | 176 | 4.13e-31 | 116 |
| MS.gene015855.t1 | MTR_1g106885 | 25.137 | 183 | 110 | 2 | 116 | 292 | 144 | 305 | 1.13e-14 | 75.1 |
| MS.gene015855.t1 | MTR_2g022120 | 25.137 | 183 | 110 | 2 | 116 | 292 | 147 | 308 | 1.15e-14 | 75.1 |
| MS.gene015855.t1 | MTR_5g077245 | 26.316 | 152 | 106 | 1 | 116 | 261 | 136 | 287 | 1.69e-14 | 74.7 |
| MS.gene015855.t1 | MTR_7g461350 | 23.750 | 160 | 117 | 1 | 88 | 242 | 92 | 251 | 1.95e-14 | 74.3 |
| MS.gene015855.t1 | MTR_6g016670 | 23.750 | 160 | 117 | 1 | 88 | 242 | 92 | 251 | 1.95e-14 | 74.3 |
| MS.gene015855.t1 | MTR_3g464310 | 23.750 | 160 | 117 | 1 | 88 | 242 | 92 | 251 | 1.95e-14 | 74.3 |
| MS.gene015855.t1 | MTR_5g066280 | 25.098 | 255 | 151 | 5 | 116 | 352 | 83 | 315 | 3.40e-14 | 73.2 |
| MS.gene015855.t1 | MTR_8g015740 | 40.127 | 157 | 64 | 8 | 1 | 154 | 1 | 130 | 3.43e-14 | 69.3 |
| MS.gene015855.t1 | MTR_3g464170 | 23.125 | 160 | 118 | 1 | 88 | 242 | 92 | 251 | 3.53e-14 | 73.6 |
| MS.gene015855.t1 | MTR_1g100375 | 23.125 | 160 | 118 | 1 | 88 | 242 | 92 | 251 | 3.53e-14 | 73.6 |
| MS.gene015855.t1 | MTR_4g026120 | 25.137 | 183 | 110 | 2 | 116 | 292 | 83 | 244 | 4.06e-14 | 73.2 |
| MS.gene015855.t1 | MTR_4g036435 | 25.137 | 183 | 110 | 2 | 116 | 292 | 83 | 244 | 4.06e-14 | 73.2 |
| MS.gene015855.t1 | MTR_3g450670 | 23.077 | 156 | 115 | 1 | 92 | 242 | 92 | 247 | 4.11e-14 | 73.2 |
| MS.gene015855.t1 | MTR_1g471070 | 23.077 | 156 | 115 | 1 | 92 | 242 | 92 | 247 | 4.11e-14 | 73.2 |
| MS.gene015855.t1 | MTR_6g051405 | 23.125 | 160 | 118 | 1 | 88 | 242 | 92 | 251 | 4.60e-14 | 73.2 |
| MS.gene015855.t1 | MTR_4g013220 | 25.137 | 183 | 110 | 2 | 116 | 292 | 83 | 244 | 4.66e-14 | 72.8 |
| MS.gene015855.t1 | MTR_3g067785 | 25.137 | 183 | 110 | 2 | 116 | 292 | 83 | 244 | 4.84e-14 | 72.8 |
| MS.gene015855.t1 | MTR_6g453050 | 24.719 | 178 | 121 | 3 | 97 | 261 | 57 | 234 | 5.63e-14 | 72.4 |
| MS.gene015855.t1 | MTR_6g092533 | 26.027 | 146 | 107 | 1 | 116 | 260 | 147 | 292 | 8.97e-14 | 72.4 |
| MS.gene015855.t1 | MTR_2g072860 | 23.125 | 160 | 118 | 1 | 88 | 242 | 24 | 183 | 1.26e-13 | 71.2 |
| MS.gene015855.t1 | MTR_4g046740 | 36.522 | 115 | 62 | 3 | 262 | 369 | 24 | 134 | 1.43e-13 | 67.8 |
| MS.gene015855.t1 | MTR_2g023560 | 58.824 | 51 | 21 | 0 | 118 | 168 | 57 | 107 | 1.07e-12 | 64.7 |
| MS.gene015855.t1 | MTR_1g075060 | 26.404 | 178 | 104 | 5 | 97 | 261 | 108 | 271 | 1.67e-11 | 65.5 |
| MS.gene015855.t1 | MTR_7g083520 | 24.503 | 151 | 107 | 2 | 97 | 240 | 31 | 181 | 2.54e-11 | 64.3 |
| MS.gene015855.t1 | MTR_7g062380 | 23.026 | 152 | 111 | 1 | 116 | 261 | 18 | 169 | 8.37e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015855.t1 | AT5G41220 | 38.500 | 200 | 111 | 5 | 115 | 304 | 264 | 461 | 2.09e-27 | 114 |
| MS.gene015855.t1 | AT5G41220 | 38.500 | 200 | 111 | 5 | 115 | 304 | 206 | 403 | 2.27e-27 | 113 |
| MS.gene015855.t1 | AT5G41220 | 38.500 | 200 | 111 | 5 | 115 | 304 | 214 | 411 | 2.52e-27 | 113 |
| MS.gene015855.t1 | AT5G41240 | 33.047 | 233 | 138 | 6 | 87 | 303 | 231 | 461 | 7.01e-25 | 106 |
| MS.gene015855.t1 | AT3G47680 | 33.486 | 218 | 127 | 6 | 118 | 326 | 44 | 252 | 1.63e-22 | 96.7 |
| MS.gene015855.t1 | AT1G66235 | 28.571 | 126 | 87 | 2 | 124 | 246 | 7 | 132 | 1.15e-12 | 68.2 |
Find 73 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTTCTCCCTTCCATTT+AGG | 0.213354 | 4.3:+3398941 | None:intergenic |
| AACTCCCACGATCGGATCTT+TGG | 0.301608 | 4.3:+3399240 | None:intergenic |
| GAACCGTCACCGGCAGTTAA+TGG | 0.321759 | 4.3:+3399481 | None:intergenic |
| TGTTGAAGGATGAACCTAAA+TGG | 0.353625 | 4.3:-3398955 | MS.gene015855:CDS |
| GAAGTATTTCAAGAGAAGTT+AGG | 0.386733 | 4.3:-3398558 | None:intergenic |
| TTTGAGAACCATCACCGATT+GGG | 0.409235 | 4.3:+3399614 | None:intergenic |
| TGTTGAATAGACATTGTCAT+TGG | 0.417954 | 4.3:-3399111 | MS.gene015855:CDS |
| GTTGTATTCTGAACAATCAA+TGG | 0.420235 | 4.3:+3398847 | None:intergenic |
| TCAACCACCTAGCGTAGAAC+TGG | 0.422168 | 4.3:-3399434 | MS.gene015855:CDS |
| TCCACAATGGGTGTTGTAGA+TGG | 0.423191 | 4.3:+3398755 | None:intergenic |
| ATGATAATTTCATACAACTT+TGG | 0.432224 | 4.3:+3398650 | None:intergenic |
| AATTATAGTAATGGTTCCAT+TGG | 0.452755 | 4.3:+3399647 | None:intergenic |
| TTGTATTCTGAACAATCAAT+GGG | 0.457951 | 4.3:+3398848 | None:intergenic |
| AGATCAAAGACATCATCTAC+TGG | 0.478245 | 4.3:-3398902 | MS.gene015855:CDS |
| TTTGCATATAATTATAGTAA+TGG | 0.482649 | 4.3:+3399638 | None:intergenic |
| CATGATGGACAAATCAAAGA+TGG | 0.486498 | 4.3:-3398630 | MS.gene015855:CDS |
| AATGTTACTTCCACGGAAGA+AGG | 0.498412 | 4.3:-3399346 | MS.gene015855:CDS |
| GCACGCGTGGCGGTTGTTGA+AGG | 0.504466 | 4.3:-3398969 | MS.gene015855:CDS |
| AGAAGTTTGTAAAAGTATCA+AGG | 0.506530 | 4.3:-3398582 | MS.gene015855:CDS |
| CTGCTAGGGAGTGGTGGTCG+TGG | 0.507126 | 4.3:+3399571 | None:intergenic |
| GTTGTATGAAATTATCATGA+TGG | 0.509191 | 4.3:-3398645 | MS.gene015855:CDS |
| TATTGAGAACCGTCACTGCT+AGG | 0.510279 | 4.3:+3399556 | None:intergenic |
| AATTATATGCAAACCCCAAT+CGG | 0.514611 | 4.3:-3399628 | MS.gene015855:CDS |
| TAAAATAGCTGAAGCAAGGT+TGG | 0.515676 | 4.3:-3398684 | MS.gene015855:CDS |
| GCTGTTACTAACAAGAAAAG+TGG | 0.520506 | 4.3:-3399067 | MS.gene015855:CDS |
| GTCTAGCATCGAAAATGTCT+CGG | 0.531029 | 4.3:-3398729 | MS.gene015855:CDS |
| ATGCTAGACAAATCCACAAT+GGG | 0.540830 | 4.3:+3398743 | None:intergenic |
| GCAGTCTGAGTCCGACATCA+TGG | 0.543761 | 4.3:-3399044 | MS.gene015855:CDS |
| CAATCACCGCCATTAACTGC+CGG | 0.543770 | 4.3:-3399490 | MS.gene015855:CDS |
| AGTGTCAGTGTACTCGACTC+AGG | 0.544532 | 4.3:-3399380 | MS.gene015855:CDS |
| GGAGACTCATAGCGAGGGAG+TGG | 0.545823 | 4.3:-3399159 | MS.gene015855:CDS |
| GATTGAAACATACAAGGTCG+TGG | 0.546490 | 4.3:+3399508 | None:intergenic |
| TTGAGAACCATCACCGATTG+GGG | 0.549171 | 4.3:+3399615 | None:intergenic |
| GGTGATTCCAGTTCTACGCT+AGG | 0.553730 | 4.3:+3399427 | None:intergenic |
| ATCTCAAACTGACCGTCCGA+TGG | 0.554128 | 4.3:-3398819 | MS.gene015855:CDS |
| GTCAAATGGATCACAACCAA+TGG | 0.559003 | 4.3:-3399663 | None:intergenic |
| TCTCAAACTGACCGTCCGAT+GGG | 0.559121 | 4.3:-3398818 | MS.gene015855:CDS |
| ATTGAGAACCGTCACTGCTA+GGG | 0.559663 | 4.3:+3399557 | None:intergenic |
| GAATCTGTAGTGGATTCAAT+TGG | 0.562646 | 4.3:+3399406 | None:intergenic |
| GAAGGATGAACCTAAATGGA+AGG | 0.565794 | 4.3:-3398951 | MS.gene015855:CDS |
| TCCATCTACAACACCCATTG+TGG | 0.571693 | 4.3:-3398756 | MS.gene015855:CDS |
| ATGCAAACCCCAATCGGTGA+TGG | 0.572846 | 4.3:-3399622 | MS.gene015855:CDS |
| CTGTTACTAACAAGAAAAGT+GGG | 0.573605 | 4.3:-3399066 | MS.gene015855:CDS |
| TCTAGAAAATGTTACTTCCA+CGG | 0.579593 | 4.3:-3399353 | MS.gene015855:CDS |
| CCACCACTCCCTAGCAGTGA+CGG | 0.586402 | 4.3:-3399565 | MS.gene015855:CDS |
| CCGCCATTAACTGCCGGTGA+CGG | 0.594377 | 4.3:-3399484 | MS.gene015855:CDS |
| ATAAATTGCTTATTCAAACA+TGG | 0.603441 | 4.3:-3399273 | MS.gene015855:CDS |
| GAACCGTCACTGCTAGGGAG+TGG | 0.603444 | 4.3:+3399562 | None:intergenic |
| ATTGAAACATACAAGGTCGT+GGG | 0.606011 | 4.3:+3399509 | None:intergenic |
| AGAACGCTCTCCTTCTTCCG+TGG | 0.611495 | 4.3:+3399336 | None:intergenic |
| CCGTCACTGCTAGGGAGTGG+TGG | 0.615284 | 4.3:+3399565 | None:intergenic |
| ATGTGCATCATCCATGATGT+CGG | 0.617093 | 4.3:+3399033 | None:intergenic |
| ATAATAAAATAGCTGAAGCA+AGG | 0.619943 | 4.3:-3398688 | MS.gene015855:CDS |
| AAGGATGAACCTAAATGGAA+GGG | 0.623792 | 4.3:-3398950 | MS.gene015855:CDS |
| TCAGTGTACTCGACTCAGGT+TGG | 0.627390 | 4.3:-3399376 | MS.gene015855:CDS |
| GGCGGTGATTGAAACATACA+AGG | 0.629344 | 4.3:+3399502 | None:intergenic |
| GATTCCAGTTCTACGCTAGG+TGG | 0.631252 | 4.3:+3399430 | None:intergenic |
| GATCAAAGACATCATCTACT+GGG | 0.635030 | 4.3:-3398901 | MS.gene015855:CDS |
| GTTTCACAATGGAGCACGCG+TGG | 0.636597 | 4.3:-3398982 | MS.gene015855:CDS |
| ATTTCCAAAGATCCGATCGT+GGG | 0.637771 | 4.3:-3399244 | MS.gene015855:CDS |
| GATGGCTATGACAAATATCG+TGG | 0.640937 | 4.3:-3399181 | MS.gene015855:CDS |
| TCGTGGGAGACTCATAGCGA+GGG | 0.641783 | 4.3:-3399164 | MS.gene015855:CDS |
| CATTTCCAAAGATCCGATCG+TGG | 0.644587 | 4.3:-3399245 | MS.gene015855:CDS |
| CTCAAACTGACCGTCCGATG+GGG | 0.645892 | 4.3:-3398817 | MS.gene015855:CDS |
| TGACACTTGAGAATCTGTAG+TGG | 0.652003 | 4.3:+3399396 | None:intergenic |
| ATCGTGGGAGACTCATAGCG+AGG | 0.654193 | 4.3:-3399165 | MS.gene015855:CDS |
| ATGGCTATGACAAATATCGT+GGG | 0.656586 | 4.3:-3399180 | MS.gene015855:CDS |
| GATGCTAGACAAATCCACAA+TGG | 0.658808 | 4.3:+3398742 | None:intergenic |
| ACGTAAAATACGTTTCACAA+TGG | 0.660458 | 4.3:-3398993 | MS.gene015855:CDS |
| GGTCCACACTCAAATCTCGA+TGG | 0.664593 | 4.3:-3399138 | MS.gene015855:CDS |
| TCACAATGGAGCACGCGTGG+CGG | 0.673207 | 4.3:-3398979 | MS.gene015855:CDS |
| CCGTCACCGGCAGTTAATGG+CGG | 0.711408 | 4.3:+3399484 | None:intergenic |
| ATGCCATCGAGATTTGAGTG+TGG | 0.717662 | 4.3:+3399135 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGCATATAATTATAGTAA+TGG | + | chr4.3:3398582-3398601 | None:intergenic | 15.0% |
| !! | ATAAATTGCTTATTCAAACA+TGG | - | chr4.3:3398944-3398963 | MS.gene015855:CDS | 20.0% |
| !! | ATGATAATTTCATACAACTT+TGG | + | chr4.3:3399570-3399589 | None:intergenic | 20.0% |
| ! | AATTATAGTAATGGTTCCAT+TGG | + | chr4.3:3398573-3398592 | None:intergenic | 25.0% |
| ! | ATAATAAAATAGCTGAAGCA+AGG | - | chr4.3:3399529-3399548 | MS.gene015855:CDS | 25.0% |
| ! | GTTGTATGAAATTATCATGA+TGG | - | chr4.3:3399572-3399591 | MS.gene015855:CDS | 25.0% |
| ! | TTGTATTCTGAACAATCAAT+GGG | + | chr4.3:3399372-3399391 | None:intergenic | 25.0% |
| !!! | AGAAGTTTGTAAAAGTATCA+AGG | - | chr4.3:3399635-3399654 | MS.gene015855:CDS | 25.0% |
| AATTATATGCAAACCCCAAT+CGG | - | chr4.3:3398589-3398608 | MS.gene015855:CDS | 30.0% | |
| ACGTAAAATACGTTTCACAA+TGG | - | chr4.3:3399224-3399243 | MS.gene015855:CDS | 30.0% | |
| CTAGGTGGTTGAAAAATAAA+AGG | + | chr4.3:3398775-3398794 | None:intergenic | 30.0% | |
| CTGTTACTAACAAGAAAAGT+GGG | - | chr4.3:3399151-3399170 | MS.gene015855:CDS | 30.0% | |
| GTTGTATTCTGAACAATCAA+TGG | + | chr4.3:3399373-3399392 | None:intergenic | 30.0% | |
| TGTTGAATAGACATTGTCAT+TGG | - | chr4.3:3399106-3399125 | MS.gene015855:CDS | 30.0% | |
| ! | TCTAGAAAATGTTACTTCCA+CGG | - | chr4.3:3398864-3398883 | MS.gene015855:CDS | 30.0% |
| !!! | GTTTTGAGACATAAAAGGTT+GGG | + | chr4.3:3398689-3398708 | None:intergenic | 30.0% |
| !!! | TTTTGAGACATAAAAGGTTG+GGG | + | chr4.3:3398688-3398707 | None:intergenic | 30.0% |
| AAGGATGAACCTAAATGGAA+GGG | - | chr4.3:3399267-3399286 | MS.gene015855:CDS | 35.0% | |
| AGATCAAAGACATCATCTAC+TGG | - | chr4.3:3399315-3399334 | MS.gene015855:CDS | 35.0% | |
| ATGCTAGACAAATCCACAAT+GGG | + | chr4.3:3399477-3399496 | None:intergenic | 35.0% | |
| ATGGCTATGACAAATATCGT+GGG | - | chr4.3:3399037-3399056 | MS.gene015855:CDS | 35.0% | |
| ATTGAAACATACAAGGTCGT+GGG | + | chr4.3:3398711-3398730 | None:intergenic | 35.0% | |
| GATCAAAGACATCATCTACT+GGG | - | chr4.3:3399316-3399335 | MS.gene015855:CDS | 35.0% | |
| GCTGTTACTAACAAGAAAAG+TGG | - | chr4.3:3399150-3399169 | MS.gene015855:CDS | 35.0% | |
| GGTTGAAAAATAAAAGGTCG+TGG | + | chr4.3:3398769-3398788 | None:intergenic | 35.0% | |
| TAAAATAGCTGAAGCAAGGT+TGG | - | chr4.3:3399533-3399552 | MS.gene015855:CDS | 35.0% | |
| TGTTGAAGGATGAACCTAAA+TGG | - | chr4.3:3399262-3399281 | MS.gene015855:CDS | 35.0% | |
| ! | ACCAAAAAGCAGATAGCTTT+TGG | - | chr4.3:3399001-3399020 | MS.gene015855:CDS | 35.0% |
| ! | CAAAAAGCAGATAGCTTTTG+GGG | - | chr4.3:3399003-3399022 | MS.gene015855:CDS | 35.0% |
| ! | CCAAAAAGCAGATAGCTTTT+GGG | - | chr4.3:3399002-3399021 | MS.gene015855:CDS | 35.0% |
| ! | GAACAATCAATGGGATTTTC+TGG | + | chr4.3:3399363-3399382 | None:intergenic | 35.0% |
| !! | CATGATGGACAAATCAAAGA+TGG | - | chr4.3:3399587-3399606 | MS.gene015855:CDS | 35.0% |
| !! | GAATCTGTAGTGGATTCAAT+TGG | + | chr4.3:3398814-3398833 | None:intergenic | 35.0% |
| !!! | ACCTGAAACGTTGTTTTTTC+TGG | + | chr4.3:3398909-3398928 | None:intergenic | 35.0% |
| !!! | AGACATTGTCATTGGTTTTG+CGG | - | chr4.3:3399114-3399133 | MS.gene015855:CDS | 35.0% |
| !!! | GGTTTTGAGACATAAAAGGT+TGG | + | chr4.3:3398690-3398709 | None:intergenic | 35.0% |
| AAAAAGGAAGGGAAAGGGAA+AGG | - | chr4.3:3399434-3399453 | MS.gene015855:CDS | 40.0% | |
| ATGTGCATCATCCATGATGT+CGG | + | chr4.3:3399187-3399206 | None:intergenic | 40.0% | |
| ATTGCTTCTCCCTTCCATTT+AGG | + | chr4.3:3399279-3399298 | None:intergenic | 40.0% | |
| ATTTCCAAAGATCCGATCGT+GGG | - | chr4.3:3398973-3398992 | MS.gene015855:CDS | 40.0% | |
| CAAAAAGCGGCAAAAAGGAA+GGG | - | chr4.3:3399423-3399442 | MS.gene015855:CDS | 40.0% | |
| GAAGGATGAACCTAAATGGA+AGG | - | chr4.3:3399266-3399285 | MS.gene015855:CDS | 40.0% | |
| GATGCTAGACAAATCCACAA+TGG | + | chr4.3:3399478-3399497 | None:intergenic | 40.0% | |
| GATGGCTATGACAAATATCG+TGG | - | chr4.3:3399036-3399055 | MS.gene015855:CDS | 40.0% | |
| GATTGAAACATACAAGGTCG+TGG | + | chr4.3:3398712-3398731 | None:intergenic | 40.0% | |
| GCCAGAAAAAACAACGTTTC+AGG | - | chr4.3:3398905-3398924 | MS.gene015855:CDS | 40.0% | |
| TGACACTTGAGAATCTGTAG+TGG | + | chr4.3:3398824-3398843 | None:intergenic | 40.0% | |
| ! | AATGTTACTTCCACGGAAGA+AGG | - | chr4.3:3398871-3398890 | MS.gene015855:CDS | 40.0% |
| ! | GTCTAGCATCGAAAATGTCT+CGG | - | chr4.3:3399488-3399507 | MS.gene015855:CDS | 40.0% |
| ! | TTTGAGAACCATCACCGATT+GGG | + | chr4.3:3398606-3398625 | None:intergenic | 40.0% |
| !! | CCCAAAAGCTATCTGCTTTT+TGG | + | chr4.3:3399005-3399024 | None:intergenic | 40.0% |
| !! | TTTTGAGAACCATCACCGAT+TGG | + | chr4.3:3398607-3398626 | None:intergenic | 40.0% |
| !!! | CGTGGGTTTTGAGACATAAA+AGG | + | chr4.3:3398694-3398713 | None:intergenic | 40.0% |
| !!! | TAGCTTTTGGGGTAGAATCA+AGG | - | chr4.3:3399014-3399033 | MS.gene015855:CDS | 40.0% |
| !!! | TTTTGGGGTAGAATCAAGGA+TGG | - | chr4.3:3399018-3399037 | MS.gene015855:CDS | 40.0% |
| ATGCCATCGAGATTTGAGTG+TGG | + | chr4.3:3399085-3399104 | None:intergenic | 45.0% | |
| ATTGAGAACCGTCACTGCTA+GGG | + | chr4.3:3398663-3398682 | None:intergenic | 45.0% | |
| CATTTCCAAAGATCCGATCG+TGG | - | chr4.3:3398972-3398991 | MS.gene015855:CDS | 45.0% | |
| GCAAAAAGCGGCAAAAAGGA+AGG | - | chr4.3:3399422-3399441 | MS.gene015855:CDS | 45.0% | |
| GGCGGTGATTGAAACATACA+AGG | + | chr4.3:3398718-3398737 | None:intergenic | 45.0% | |
| TATTGAGAACCGTCACTGCT+AGG | + | chr4.3:3398664-3398683 | None:intergenic | 45.0% | |
| TCCATCTACAACACCCATTG+TGG | - | chr4.3:3399461-3399480 | MS.gene015855:CDS | 45.0% | |
| ! | TCCACAATGGGTGTTGTAGA+TGG | + | chr4.3:3399465-3399484 | None:intergenic | 45.0% |
| ! | TTGAGAACCATCACCGATTG+GGG | + | chr4.3:3398605-3398624 | None:intergenic | 45.0% |
| ! | TTTTGGTCAACTCCCACGAT+CGG | + | chr4.3:3398988-3399007 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGAACCGTCAC+CGG | + | chr4.3:3398749-3398768 | None:intergenic | 45.0% |
| AACTCCCACGATCGGATCTT+TGG | + | chr4.3:3398980-3398999 | None:intergenic | 50.0% | |
| AGCGGCAAAAAGGAAGGGAA+AGG | - | chr4.3:3399428-3399447 | MS.gene015855:CDS | 50.0% | |
| AGTGTCAGTGTACTCGACTC+AGG | - | chr4.3:3398837-3398856 | MS.gene015855:CDS | 50.0% | |
| ATCTCAAACTGACCGTCCGA+TGG | - | chr4.3:3399398-3399417 | MS.gene015855:CDS | 50.0% | |
| ATGCAAACCCCAATCGGTGA+TGG | - | chr4.3:3398595-3398614 | MS.gene015855:CDS | 50.0% | |
| CAATCACCGCCATTAACTGC+CGG | - | chr4.3:3398727-3398746 | MS.gene015855:CDS | 50.0% | |
| GATTCCAGTTCTACGCTAGG+TGG | + | chr4.3:3398790-3398809 | None:intergenic | 50.0% | |
| GCGGCAAAAAGGAAGGGAAA+GGG | - | chr4.3:3399429-3399448 | MS.gene015855:CDS | 50.0% | |
| GGTCCACACTCAAATCTCGA+TGG | - | chr4.3:3399079-3399098 | MS.gene015855:CDS | 50.0% | |
| GGTGATTCCAGTTCTACGCT+AGG | + | chr4.3:3398793-3398812 | None:intergenic | 50.0% | |
| TCAACCACCTAGCGTAGAAC+TGG | - | chr4.3:3398783-3398802 | MS.gene015855:CDS | 50.0% | |
| TCAGTGTACTCGACTCAGGT+TGG | - | chr4.3:3398841-3398860 | MS.gene015855:CDS | 50.0% | |
| TCTCAAACTGACCGTCCGAT+GGG | - | chr4.3:3399399-3399418 | MS.gene015855:CDS | 50.0% | |
| TGGGGCAAAAAGCGGCAAAA+AGG | - | chr4.3:3399418-3399437 | MS.gene015855:CDS | 50.0% | |
| !!! | TTTGCCGCTTTTTGCCCCAT+CGG | + | chr4.3:3399417-3399436 | None:intergenic | 50.0% |
| AGAACGCTCTCCTTCTTCCG+TGG | + | chr4.3:3398884-3398903 | None:intergenic | 55.0% | |
| ATCGTGGGAGACTCATAGCG+AGG | - | chr4.3:3399052-3399071 | MS.gene015855:CDS | 55.0% | |
| CTCAAACTGACCGTCCGATG+GGG | - | chr4.3:3399400-3399419 | MS.gene015855:CDS | 55.0% | |
| GAACCGTCACCGGCAGTTAA+TGG | + | chr4.3:3398739-3398758 | None:intergenic | 55.0% | |
| GCAGTCTGAGTCCGACATCA+TGG | - | chr4.3:3399173-3399192 | MS.gene015855:CDS | 55.0% | |
| GTTTCACAATGGAGCACGCG+TGG | - | chr4.3:3399235-3399254 | MS.gene015855:CDS | 55.0% | |
| TCGTGGGAGACTCATAGCGA+GGG | - | chr4.3:3399053-3399072 | MS.gene015855:CDS | 55.0% | |
| CCACCACTCCCTAGCAGTGA+CGG | - | chr4.3:3398652-3398671 | MS.gene015855:CDS | 60.0% | |
| CCGCCATTAACTGCCGGTGA+CGG | - | chr4.3:3398733-3398752 | MS.gene015855:CDS | 60.0% | |
| CCGTCACCGGCAGTTAATGG+CGG | + | chr4.3:3398736-3398755 | None:intergenic | 60.0% | |
| CCGTCCGATGGGGCAAAAAG+CGG | - | chr4.3:3399410-3399429 | MS.gene015855:CDS | 60.0% | |
| GAACCGTCACTGCTAGGGAG+TGG | + | chr4.3:3398658-3398677 | None:intergenic | 60.0% | |
| GGAGACTCATAGCGAGGGAG+TGG | - | chr4.3:3399058-3399077 | MS.gene015855:CDS | 60.0% | |
| TCACAATGGAGCACGCGTGG+CGG | - | chr4.3:3399238-3399257 | MS.gene015855:CDS | 60.0% | |
| !!! | CCGCTTTTTGCCCCATCGGA+CGG | + | chr4.3:3399413-3399432 | None:intergenic | 60.0% |
| CCGTCACTGCTAGGGAGTGG+TGG | + | chr4.3:3398655-3398674 | None:intergenic | 65.0% | |
| CTGCTAGGGAGTGGTGGTCG+TGG | + | chr4.3:3398649-3398668 | None:intergenic | 65.0% | |
| GCACGCGTGGCGGTTGTTGA+AGG | - | chr4.3:3399248-3399267 | MS.gene015855:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3398559 | 3399680 | 3398559 | ID=MS.gene015855 |
| chr4.3 | mRNA | 3398559 | 3399680 | 3398559 | ID=MS.gene015855.t1;Parent=MS.gene015855 |
| chr4.3 | exon | 3398559 | 3399680 | 3398559 | ID=MS.gene015855.t1.exon1;Parent=MS.gene015855.t1 |
| chr4.3 | CDS | 3398559 | 3399680 | 3398559 | ID=cds.MS.gene015855.t1;Parent=MS.gene015855.t1 |
| Gene Sequence |
| Protein sequence |
