Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016058.t1 | XP_003588878.1 | 98 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 3.00E-275 | 957.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016058.t1 | Q5FV41 | 66.7 | 471 | 154 | 2 | 33 | 501 | 28 | 497 | 2.4e-180 | 633.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016058.t1 | G7I897 | 98.0 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 2.2e-275 | 957.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30146 | MS.gene016058 | PPI |
| MS.gene027122 | MS.gene016058 | PPI |
| MS.gene82704 | MS.gene016058 | PPI |
| MS.gene94353 | MS.gene016058 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016058.t1 | MTR_1g014250 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1006 |
| MS.gene016058.t1 | MTR_1g014250 | 98.153 | 379 | 6 | 1 | 126 | 503 | 3 | 381 | 0.0 | 745 |
| MS.gene016058.t1 | MTR_1g014220 | 44.635 | 466 | 208 | 3 | 35 | 497 | 27 | 445 | 6.50e-136 | 400 |
| MS.gene016058.t1 | MTR_5g007060 | 81.034 | 116 | 7 | 1 | 303 | 418 | 167 | 267 | 1.61e-51 | 176 |
| MS.gene016058.t1 | MTR_1g103530 | 31.805 | 349 | 213 | 9 | 40 | 370 | 93 | 434 | 1.06e-34 | 138 |
| MS.gene016058.t1 | MTR_3g008470 | 27.792 | 403 | 277 | 5 | 74 | 467 | 123 | 520 | 2.10e-30 | 125 |
| MS.gene016058.t1 | MTR_3g051190 | 33.333 | 198 | 127 | 2 | 266 | 462 | 295 | 488 | 9.34e-27 | 113 |
| MS.gene016058.t1 | MTR_3g051190 | 27.143 | 210 | 142 | 5 | 37 | 240 | 3 | 207 | 3.39e-15 | 78.6 |
| MS.gene016058.t1 | MTR_1g103530 | 30.627 | 271 | 174 | 7 | 109 | 370 | 4 | 269 | 3.18e-20 | 93.6 |
| MS.gene016058.t1 | MTR_2g031810 | 26.567 | 335 | 205 | 9 | 139 | 454 | 29 | 341 | 1.21e-15 | 79.0 |
| MS.gene016058.t1 | MTR_2g031770 | 30.921 | 152 | 95 | 3 | 75 | 216 | 46 | 197 | 5.05e-13 | 69.3 |
| MS.gene016058.t1 | MTR_1g103540 | 45.312 | 64 | 35 | 0 | 384 | 447 | 22 | 85 | 6.16e-11 | 60.1 |
| MS.gene016058.t1 | MTR_2g031790 | 29.710 | 138 | 97 | 0 | 317 | 454 | 181 | 318 | 7.86e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016058.t1 | AT5G25050 | 66.667 | 471 | 154 | 2 | 33 | 501 | 28 | 497 | 0.0 | 659 |
| MS.gene016058.t1 | AT1G79710 | 55.734 | 497 | 216 | 3 | 1 | 497 | 1 | 493 | 0.0 | 591 |
| MS.gene016058.t1 | AT1G79710 | 55.734 | 497 | 216 | 3 | 1 | 497 | 1 | 493 | 0.0 | 591 |
| MS.gene016058.t1 | AT5G25040 | 57.228 | 505 | 194 | 7 | 2 | 501 | 3 | 490 | 0.0 | 577 |
| MS.gene016058.t1 | AT5G25040 | 54.528 | 530 | 194 | 8 | 2 | 501 | 3 | 515 | 0.0 | 564 |
| MS.gene016058.t1 | AT5G25040 | 58.295 | 434 | 167 | 4 | 2 | 432 | 3 | 425 | 3.77e-179 | 511 |
| MS.gene016058.t1 | AT1G79710 | 56.140 | 399 | 174 | 1 | 1 | 399 | 1 | 398 | 5.82e-170 | 485 |
| MS.gene016058.t1 | AT5G25040 | 56.331 | 387 | 155 | 4 | 2 | 385 | 3 | 378 | 1.82e-153 | 442 |
| MS.gene016058.t1 | AT5G25040 | 60.511 | 352 | 128 | 4 | 152 | 501 | 1 | 343 | 1.52e-149 | 431 |
| MS.gene016058.t1 | AT5G10820 | 48.571 | 455 | 228 | 2 | 13 | 464 | 23 | 474 | 4.24e-143 | 421 |
| MS.gene016058.t1 | AT2G32040 | 32.944 | 428 | 265 | 10 | 62 | 477 | 6 | 423 | 1.35e-48 | 173 |
| MS.gene016058.t1 | AT2G32040 | 32.723 | 437 | 271 | 10 | 53 | 477 | 129 | 554 | 3.69e-48 | 175 |
| MS.gene016058.t1 | AT5G54860 | 25.873 | 487 | 294 | 9 | 37 | 462 | 3 | 483 | 9.99e-45 | 164 |
| MS.gene016058.t1 | AT1G04570 | 27.861 | 402 | 270 | 8 | 74 | 465 | 109 | 500 | 8.96e-28 | 117 |
| MS.gene016058.t1 | AT2G33280 | 27.273 | 407 | 270 | 8 | 74 | 465 | 106 | 501 | 1.59e-27 | 116 |
| MS.gene016058.t1 | AT2G33280 | 27.475 | 404 | 267 | 8 | 77 | 465 | 1 | 393 | 6.12e-27 | 113 |
| MS.gene016058.t1 | AT1G04570 | 30.769 | 208 | 137 | 3 | 260 | 465 | 150 | 352 | 2.63e-21 | 96.3 |
| MS.gene016058.t1 | AT2G33280 | 29.279 | 222 | 146 | 4 | 246 | 465 | 107 | 319 | 7.54e-18 | 85.5 |
| MS.gene016058.t1 | AT1G64890 | 23.515 | 421 | 297 | 8 | 46 | 456 | 19 | 424 | 4.83e-15 | 77.8 |
Find 95 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTGTGTTGGCAATTT+TGG | 0.063315 | 1.3:-8338009 | MS.gene016058:CDS |
| CTTGGATTGTTAAGCCTTTA+TGG | 0.130713 | 1.3:-8339639 | MS.gene016058:CDS |
| GGTATAATATTGCTCCTAAA+AGG | 0.175539 | 1.3:+8335820 | None:intergenic |
| TCCAGCTGGACTTATAATTT+TGG | 0.227795 | 1.3:-8337665 | MS.gene016058:CDS |
| TCTTCTATTGGTGCACTATT+AGG | 0.233671 | 1.3:-8337864 | MS.gene016058:CDS |
| TTTGGAGTAGTTGTTGTTTA+TGG | 0.240305 | 1.3:-8339778 | MS.gene016058:CDS |
| TTGATGGTTGCAGGTTTATT+AGG | 0.248071 | 1.3:-8338071 | MS.gene016058:intron |
| TTGGATTGTTAAGCCTTTAT+GGG | 0.253679 | 1.3:-8339638 | MS.gene016058:CDS |
| GAACAAAGTTTGATAATCTT+TGG | 0.261678 | 1.3:-8335470 | MS.gene016058:CDS |
| GGCATCTTTGTTCACCTTAT+AGG | 0.269657 | 1.3:-8337828 | MS.gene016058:CDS |
| CAGTTGCTCTATGGTCTATC+AGG | 0.276942 | 1.3:-8335750 | MS.gene016058:CDS |
| AGTCAAAGGGTGTTAGAATA+TGG | 0.282434 | 1.3:-8339867 | MS.gene016058:CDS |
| GGTTTAGGTGGTGCTCTTGC+TGG | 0.292167 | 1.3:-8339745 | MS.gene016058:CDS |
| GGAAGAAGAATGAAAGAGTT+AGG | 0.300985 | 1.3:+8335375 | None:intergenic |
| TGTGCCTTTAGTTCTTCTAT+TGG | 0.305955 | 1.3:-8337876 | MS.gene016058:CDS |
| TGCCGGCATCCACAAAGTTT+TGG | 0.309039 | 1.3:+8337332 | None:intergenic |
| GGCTAACCATAGGGCCTATA+AGG | 0.323121 | 1.3:+8337814 | None:intergenic |
| AAGATTATCAAACTTTGTTC+TGG | 0.328960 | 1.3:+8335473 | None:intergenic |
| CATTCAGAGACTTACTCTTT+TGG | 0.332958 | 1.3:-8335776 | MS.gene016058:CDS |
| AATCCGGTATACCAAACTTT+AGG | 0.344820 | 1.3:+8335694 | None:intergenic |
| AGCTCAAAGCTTTGTCCATC+TGG | 0.346803 | 1.3:-8335597 | MS.gene016058:CDS |
| CTGGACTTCTTTCATCATCA+TGG | 0.374263 | 1.3:-8335530 | MS.gene016058:CDS |
| TATGGAATAAGTCAAGGTTT+AGG | 0.377756 | 1.3:-8339760 | MS.gene016058:CDS |
| GCCTTAACAGCAGGGAGTGC+TGG | 0.387976 | 1.3:-8337987 | MS.gene016058:CDS |
| TGTAGTCCACATAGCCTTGC+CGG | 0.387979 | 1.3:+8337315 | None:intergenic |
| CTTTGTCCATCTGGTATTGA+AGG | 0.389296 | 1.3:-8335588 | MS.gene016058:CDS |
| AGAAACCAAGGATGTTGAAT+TGG | 0.391325 | 1.3:-8335310 | MS.gene016058:CDS |
| GGTGGTGCTCTTGCTGGTGT+TGG | 0.393991 | 1.3:-8339739 | MS.gene016058:CDS |
| CTGGAATTACATCTATTCCT+TGG | 0.397255 | 1.3:-8339657 | MS.gene016058:CDS |
| ATGAGATTGAACCTAAAGTT+TGG | 0.398436 | 1.3:-8335705 | MS.gene016058:CDS |
| TCCAGCACTCCCTGCTGTTA+AGG | 0.406873 | 1.3:+8337986 | None:intergenic |
| ACCAATAAAACATTCCTTCA+AGG | 0.408629 | 1.3:+8337224 | None:intergenic |
| TGGACTTCTTTCATCATCAT+GGG | 0.415817 | 1.3:-8335529 | MS.gene016058:CDS |
| CTATTAGGATTCTCTATTAG+TGG | 0.425299 | 1.3:-8337849 | MS.gene016058:CDS |
| CTAGGTGCACCAAAACTTTG+TGG | 0.428219 | 1.3:-8337341 | MS.gene016058:intron |
| CGTAATCCTTTAGAGCGTAT+TGG | 0.433360 | 1.3:+8335799 | None:intergenic |
| TTTCTTCCACAGGAAAGTAT+AGG | 0.435044 | 1.3:-8335873 | MS.gene016058:intron |
| CTGAGTTTGAATATCCTTGA+AGG | 0.437719 | 1.3:-8337238 | MS.gene016058:CDS |
| TCAAATACCTGTGAGAAAGA+TGG | 0.438222 | 1.3:+8337181 | None:intergenic |
| TGTTCACCTTATAGGCCCTA+TGG | 0.452835 | 1.3:-8337820 | MS.gene016058:intron |
| CTTTCATCATCATGGGGTGG+TGG | 0.454756 | 1.3:-8335522 | MS.gene016058:CDS |
| AGACACCAATTCAACATCCT+TGG | 0.456982 | 1.3:+8335305 | None:intergenic |
| ATCACAACAAAGACGTAATC+CGG | 0.462520 | 1.3:+8335678 | None:intergenic |
| CACCAAAACTTTGTGGATGC+CGG | 0.471200 | 1.3:-8337334 | MS.gene016058:CDS |
| GTATAATATTGCTCCTAAAA+GGG | 0.472990 | 1.3:+8335821 | None:intergenic |
| ACCAAAATTATAAGTCCAGC+TGG | 0.476055 | 1.3:+8337664 | None:intergenic |
| GAACCTAAAGTTTGGTATAC+CGG | 0.482350 | 1.3:-8335697 | MS.gene016058:CDS |
| ATTATACCAATACGCTCTAA+AGG | 0.485902 | 1.3:-8335805 | MS.gene016058:CDS |
| TGCTATCAAGAGAAATGCAT+TGG | 0.489196 | 1.3:-8339810 | MS.gene016058:CDS |
| CAAATACCTGTGAGAAAGAT+GGG | 0.493656 | 1.3:+8337182 | None:intergenic |
| CATTGAAGAATCAAGATGTA+TGG | 0.496871 | 1.3:-8337294 | MS.gene016058:CDS |
| AGTTCAACCTTCTGAAGCAC+AGG | 0.498974 | 1.3:-8339686 | MS.gene016058:CDS |
| TCTCTTGTACACAGTGTTGA+TGG | 0.499772 | 1.3:-8335285 | MS.gene016058:CDS |
| CTGTGCAACACATGCATCAA+TGG | 0.501476 | 1.3:+8337944 | None:intergenic |
| TCTTCTTCCAAAAGAAAATG+TGG | 0.503749 | 1.3:-8335361 | MS.gene016058:CDS |
| TCTGAAGCACAGGTTTATGC+TGG | 0.507686 | 1.3:-8339676 | MS.gene016058:CDS |
| TGTCAGAAGCAAGGGAAGGA+TGG | 0.513050 | 1.3:+8337910 | None:intergenic |
| TCAGTAAGAAGACCCCATAA+AGG | 0.514757 | 1.3:+8339625 | None:intergenic |
| AAAAGAAAATGTGGATTCAA+AGG | 0.516295 | 1.3:-8335352 | MS.gene016058:CDS |
| AAATGAAGAAAGAAAGTCAA+AGG | 0.519772 | 1.3:-8339881 | MS.gene016058:CDS |
| GTCAGAAGCAAGGGAAGGAT+GGG | 0.531751 | 1.3:+8337911 | None:intergenic |
| GGTTTGATGACTATTCCAGC+TGG | 0.533339 | 1.3:-8337679 | MS.gene016058:CDS |
| AAATTGCCAACACAAGATGA+AGG | 0.535053 | 1.3:+8338012 | None:intergenic |
| GTTGTTTATGGAATAAGTCA+AGG | 0.536630 | 1.3:-8339766 | MS.gene016058:CDS |
| TGCACCAATAGAAGAACTAA+AGG | 0.537673 | 1.3:+8337872 | None:intergenic |
| AACTTTGCATGTCAGAAGCA+AGG | 0.539901 | 1.3:+8337901 | None:intergenic |
| CATAAAGGCTTAACAATCCA+AGG | 0.539921 | 1.3:+8339640 | None:intergenic |
| AAATGACTAGTAGACTAAAG+TGG | 0.544535 | 1.3:-8335638 | MS.gene016058:CDS |
| TGAAAACCTTCATCTTGTGT+TGG | 0.550037 | 1.3:-8338018 | MS.gene016058:CDS |
| CTAATGTCAATTGATAATGC+TGG | 0.554898 | 1.3:-8335549 | MS.gene016058:CDS |
| AATGAAGAAAGAAAGTCAAA+GGG | 0.555190 | 1.3:-8339880 | MS.gene016058:CDS |
| CTTCTTTCATCATCATGGGG+TGG | 0.567293 | 1.3:-8335525 | MS.gene016058:CDS |
| TGGATTGTTAAGCCTTTATG+GGG | 0.567662 | 1.3:-8339637 | MS.gene016058:CDS |
| GGACTTCTTTCATCATCATG+GGG | 0.573124 | 1.3:-8335528 | MS.gene016058:CDS |
| ACAAAACTTCTCTTACAGAC+AGG | 0.574633 | 1.3:-8337614 | MS.gene016058:intron |
| ACTTTGCATGTCAGAAGCAA+GGG | 0.576270 | 1.3:+8337902 | None:intergenic |
| AAACTTTGTGGATGCCGGCA+AGG | 0.577788 | 1.3:-8337329 | MS.gene016058:CDS |
| GATATTCAAACTCAGTGCAA+AGG | 0.582025 | 1.3:+8337246 | None:intergenic |
| GCATAAACCTGTGCTTCAGA+AGG | 0.585483 | 1.3:+8339679 | None:intergenic |
| TTATTGGTATACAGACTCAA+AGG | 0.588010 | 1.3:-8337209 | MS.gene016058:CDS |
| GGAATAAGTCAAGGTTTAGG+TGG | 0.592318 | 1.3:-8339757 | MS.gene016058:CDS |
| ATGGAAAGATAACAAAAGCA+TGG | 0.598685 | 1.3:+8338040 | None:intergenic |
| AACAGCAGGGAGTGCTGGAG+TGG | 0.601674 | 1.3:-8337982 | MS.gene016058:CDS |
| GGATGGCCCATCTTTCTCAC+AGG | 0.602106 | 1.3:-8337188 | MS.gene016058:intron |
| AATGTTCCTTCAATACCAGA+TGG | 0.602463 | 1.3:+8335582 | None:intergenic |
| AAAGAGTTAGGATCAACTCT+AGG | 0.610731 | 1.3:+8335387 | None:intergenic |
| TGGTATACAGACTCAAAGGA+TGG | 0.620432 | 1.3:-8337205 | MS.gene016058:CDS |
| AGAAAATGTGGATTCAAAGG+TGG | 0.627950 | 1.3:-8335349 | MS.gene016058:CDS |
| TTTGAGCTGAGTACAAGCAT+AGG | 0.628993 | 1.3:+8335612 | None:intergenic |
| AGTTGCTCTATGGTCTATCA+GGG | 0.638082 | 1.3:-8335749 | MS.gene016058:CDS |
| TATTGACACTTCAGAAACCA+AGG | 0.638956 | 1.3:-8335322 | MS.gene016058:CDS |
| TGGATGCCGGCAAGGCTATG+TGG | 0.641291 | 1.3:-8337321 | MS.gene016058:CDS |
| TGAAGAATCAAGATGTATGG+AGG | 0.648173 | 1.3:-8337291 | MS.gene016058:CDS |
| TGCATGTCAGAAGCAAGGGA+AGG | 0.650191 | 1.3:+8337906 | None:intergenic |
| GATAAGTACATGTATAGACA+AGG | 0.690907 | 1.3:+8337268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTTTACAATTTATAA+AGG | + | chr1.3:8335793-8335812 | None:intergenic | 15.0% |
| !! | AGAAGTTTACAATTTATAAA+GGG | + | chr1.3:8335792-8335811 | None:intergenic | 15.0% |
| !! | TAGCAATAGTTTATATAATT+TGG | - | chr1.3:8339213-8339232 | MS.gene016058:intron | 15.0% |
| !! | TTTGTGTTTATCAAATTAAA+AGG | - | chr1.3:8335811-8335830 | MS.gene016058:CDS | 15.0% |
| !!! | GTATGATATTTTTTACTTTT+TGG | - | chr1.3:8338763-8338782 | MS.gene016058:intron | 15.0% |
| !!! | TTTTAAAAAATTACTAAGCA+TGG | + | chr1.3:8339188-8339207 | None:intergenic | 15.0% |
| !! | ATATTTATAGATAAGTTCAC+TGG | - | chr1.3:8338681-8338700 | MS.gene016058:intron | 20.0% |
| !! | ATTAGGGAAGTTAAAAATTA+AGG | - | chr1.3:8338814-8338833 | MS.gene016058:intron | 20.0% |
| !! | ATTATATGTGTTTCTTATAG+TGG | - | chr1.3:8337004-8337023 | MS.gene016058:intron | 20.0% |
| !! | TATAGCATCATATATATTTG+TGG | - | chr1.3:8338919-8338938 | MS.gene016058:intron | 20.0% |
| !!! | AAAGTTTTTTCATTCAACTA+GGG | + | chr1.3:8339239-8339258 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTTTCATTCAACT+AGG | + | chr1.3:8339240-8339259 | None:intergenic | 20.0% |
| !!! | TGATAGATTTTTTTCTCATA+GGG | - | chr1.3:8337497-8337516 | MS.gene016058:intron | 20.0% |
| ! | AAAAGAAAATGTGGATTCAA+AGG | - | chr1.3:8339854-8339873 | MS.gene016058:CDS | 25.0% |
| ! | AAAAGTAATAGTTATGAGCA+GGG | + | chr1.3:8336614-8336633 | None:intergenic | 25.0% |
| ! | AAATGAAGAAAGAAAGTCAA+AGG | - | chr1.3:8335325-8335344 | MS.gene016058:CDS | 25.0% |
| ! | AAGATTATCAAACTTTGTTC+TGG | + | chr1.3:8339736-8339755 | None:intergenic | 25.0% |
| ! | AATGAAGAAAGAAAGTCAAA+GGG | - | chr1.3:8335326-8335345 | MS.gene016058:CDS | 25.0% |
| ! | AGGAACTCAAAAATTGTATT+GGG | + | chr1.3:8336125-8336144 | None:intergenic | 25.0% |
| ! | ATAAGCACGTAATACTTATA+TGG | + | chr1.3:8337796-8337815 | None:intergenic | 25.0% |
| ! | ATACCAGCAAAAATGAAATA+AGG | + | chr1.3:8335638-8335657 | None:intergenic | 25.0% |
| ! | ATATAAGTATTACGTGCTTA+TGG | - | chr1.3:8337795-8337814 | MS.gene016058:intron | 25.0% |
| ! | CAAATTAAAAGGAACTTCAA+TGG | - | chr1.3:8335822-8335841 | MS.gene016058:CDS | 25.0% |
| ! | CTTAACACAATAGTAATTGA+TGG | - | chr1.3:8336399-8336418 | MS.gene016058:intron | 25.0% |
| ! | GAATTTCATGAAGTTTAGAT+TGG | + | chr1.3:8338163-8338182 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAAATCAGATT+AGG | + | chr1.3:8337846-8337865 | None:intergenic | 25.0% |
| ! | GTAAACAAATTAGCATCTAA+GGG | - | chr1.3:8336660-8336679 | MS.gene016058:intron | 25.0% |
| ! | GTACTTAGAAGAAAACATTA+GGG | - | chr1.3:8338798-8338817 | MS.gene016058:intron | 25.0% |
| ! | GTATAATATTGCTCCTAAAA+GGG | + | chr1.3:8339388-8339407 | None:intergenic | 25.0% |
| ! | GTTAAAAATTAAGGAATCCA+AGG | - | chr1.3:8338823-8338842 | MS.gene016058:intron | 25.0% |
| ! | GTTGGAAATATACAGAAAAA+TGG | - | chr1.3:8335946-8335965 | MS.gene016058:intron | 25.0% |
| ! | TAAACAAATTAGCATCTAAG+GGG | - | chr1.3:8336661-8336680 | MS.gene016058:intron | 25.0% |
| ! | TCTGATTACTCTTCTAATTT+AGG | - | chr1.3:8338434-8338453 | MS.gene016058:intron | 25.0% |
| ! | TGTACTTAGAAGAAAACATT+AGG | - | chr1.3:8338797-8338816 | MS.gene016058:intron | 25.0% |
| ! | TTATTTAGTACACTTGTTCT+AGG | - | chr1.3:8336766-8336785 | MS.gene016058:intron | 25.0% |
| ! | TTTATCTGAATGCTGAAAAT+GGG | - | chr1.3:8336694-8336713 | MS.gene016058:intron | 25.0% |
| !! | AAATGAAATAAGGTTTTCTC+CGG | + | chr1.3:8335628-8335647 | None:intergenic | 25.0% |
| !! | AAATGTTGATGGAATAACAA+GGG | - | chr1.3:8338586-8338605 | MS.gene016058:intron | 25.0% |
| !! | AATCTTTTCACCAAAAGTTA+CGG | - | chr1.3:8338734-8338753 | MS.gene016058:intron | 25.0% |
| !! | ATCAGATTAGGTGTTATATT+AGG | + | chr1.3:8337834-8337853 | None:intergenic | 25.0% |
| !! | GAACAAAGTTTGATAATCTT+TGG | - | chr1.3:8339736-8339755 | MS.gene016058:CDS | 25.0% |
| !! | TAACATCTTATTTATCCTTG+AGG | + | chr1.3:8338986-8339005 | None:intergenic | 25.0% |
| !! | TCAGATTAGGTGTTATATTA+GGG | + | chr1.3:8337833-8337852 | None:intergenic | 25.0% |
| !! | TGAAAAACTTTGCAAGTTTT+AGG | + | chr1.3:8337437-8337456 | None:intergenic | 25.0% |
| !! | TGATCTTTGTTTAAATGTGT+TGG | - | chr1.3:8335673-8335692 | MS.gene016058:CDS | 25.0% |
| !! | TTAGTCAAAAGGTTTAAAAC+CGG | - | chr1.3:8336466-8336485 | MS.gene016058:intron | 25.0% |
| !! | TTTGAATCCACATTTTCTTT+TGG | + | chr1.3:8339855-8339874 | None:intergenic | 25.0% |
| !!! | AAACCTTATTTCATTTTTGC+TGG | - | chr1.3:8335632-8335651 | MS.gene016058:CDS | 25.0% |
| !!! | ATAGATTTTTTTCTCATAGG+GGG | - | chr1.3:8337499-8337518 | MS.gene016058:intron | 25.0% |
| !!! | ATCTGATTTTTTCATTCTCT+AGG | - | chr1.3:8337847-8337866 | MS.gene016058:CDS | 25.0% |
| !!! | CTGATAGATTTTTTTCTCAT+AGG | - | chr1.3:8337496-8337515 | MS.gene016058:intron | 25.0% |
| !!! | GATAGATTTTTTTCTCATAG+GGG | - | chr1.3:8337498-8337517 | MS.gene016058:intron | 25.0% |
| !!! | TAAGAGAAGTTTTGTATATG+AGG | + | chr1.3:8337587-8337606 | None:intergenic | 25.0% |
| !!! | TGGTTTTATAATGTTGAGTT+AGG | + | chr1.3:8338467-8338486 | None:intergenic | 25.0% |
| AAAACCAACTTGTAAAGTGA+GGG | - | chr1.3:8338480-8338499 | MS.gene016058:intron | 30.0% | |
| AAACAAATTAGCATCTAAGG+GGG | - | chr1.3:8336662-8336681 | MS.gene016058:intron | 30.0% | |
| AAATGACTAGTAGACTAAAG+TGG | - | chr1.3:8339568-8339587 | MS.gene016058:intron | 30.0% | |
| AATAAAAAATCCCCCTCATT+TGG | + | chr1.3:8336148-8336167 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr1.3:8339124-8339143 | None:intergenic | 30.0% | |
| ACCAATAAAACATTCCTTCA+AGG | + | chr1.3:8337985-8338004 | None:intergenic | 30.0% | |
| AGACTACTATATTAGTGAAG+CGG | + | chr1.3:8337099-8337118 | None:intergenic | 30.0% | |
| ATCTCTTCTTCAATTCTTGT+AGG | + | chr1.3:8337069-8337088 | None:intergenic | 30.0% | |
| ATGAGATTGAACCTAAAGTT+TGG | - | chr1.3:8339501-8339520 | MS.gene016058:intron | 30.0% | |
| ATGGAAAGATAACAAAAGCA+TGG | + | chr1.3:8337169-8337188 | None:intergenic | 30.0% | |
| ATTATACCAATACGCTCTAA+AGG | - | chr1.3:8339401-8339420 | MS.gene016058:intron | 30.0% | |
| CAAAAGTAATAGTTATGAGC+AGG | + | chr1.3:8336615-8336634 | None:intergenic | 30.0% | |
| CAAACAAAGCCTTAAAATTC+GGG | - | chr1.3:8336277-8336296 | MS.gene016058:intron | 30.0% | |
| CATTGAAGAATCAAGATGTA+TGG | - | chr1.3:8337912-8337931 | MS.gene016058:CDS | 30.0% | |
| CCAAACAAAGCCTTAAAATT+CGG | - | chr1.3:8336276-8336295 | MS.gene016058:intron | 30.0% | |
| CTATTAGGATTCTCTATTAG+TGG | - | chr1.3:8337357-8337376 | MS.gene016058:intron | 30.0% | |
| GAACTCAAAAATTGTATTGG+GGG | + | chr1.3:8336123-8336142 | None:intergenic | 30.0% | |
| GAGGAACTCAAAAATTGTAT+TGG | + | chr1.3:8336126-8336145 | None:intergenic | 30.0% | |
| GATAAGTACATGTATAGACA+AGG | + | chr1.3:8337941-8337960 | None:intergenic | 30.0% | |
| GATGTTAAATCCTTGTGATT+AGG | - | chr1.3:8338999-8339018 | MS.gene016058:intron | 30.0% | |
| GGAACTCAAAAATTGTATTG+GGG | + | chr1.3:8336124-8336143 | None:intergenic | 30.0% | |
| GGAAGAAAAGAAAAATCAAG+AGG | + | chr1.3:8337416-8337435 | None:intergenic | 30.0% | |
| GGTAAACAAATTAGCATCTA+AGG | - | chr1.3:8336659-8336678 | MS.gene016058:intron | 30.0% | |
| GGTATAATATTGCTCCTAAA+AGG | + | chr1.3:8339389-8339408 | None:intergenic | 30.0% | |
| GTGATTTCACAATGTCAATA+TGG | + | chr1.3:8337755-8337774 | None:intergenic | 30.0% | |
| GTTGTTTATGGAATAAGTCA+AGG | - | chr1.3:8335440-8335459 | MS.gene016058:CDS | 30.0% | |
| GTTTATCTGAATGCTGAAAA+TGG | - | chr1.3:8336693-8336712 | MS.gene016058:intron | 30.0% | |
| TAAAACCAACTTGTAAAGTG+AGG | - | chr1.3:8338479-8338498 | MS.gene016058:intron | 30.0% | |
| TAAGTCAATCTGGCATTAAT+CGG | - | chr1.3:8336307-8336326 | MS.gene016058:intron | 30.0% | |
| TATGGAATAAGTCAAGGTTT+AGG | - | chr1.3:8335446-8335465 | MS.gene016058:CDS | 30.0% | |
| TCGTGAATACAAAAGACATT+TGG | + | chr1.3:8338400-8338419 | None:intergenic | 30.0% | |
| TCTTCTTCCAAAAGAAAATG+TGG | - | chr1.3:8339845-8339864 | MS.gene016058:CDS | 30.0% | |
| TGAGTTTAATCATTTGCACT+TGG | - | chr1.3:8336422-8336441 | MS.gene016058:intron | 30.0% | |
| TTATCTGAATGCTGAAAATG+GGG | - | chr1.3:8336695-8336714 | MS.gene016058:intron | 30.0% | |
| TTATTGGTATACAGACTCAA+AGG | - | chr1.3:8337997-8338016 | MS.gene016058:CDS | 30.0% | |
| TTGGATTGTTAAGCCTTTAT+GGG | - | chr1.3:8335568-8335587 | MS.gene016058:CDS | 30.0% | |
| TTTCTCACAGGTATTTGATT+AGG | - | chr1.3:8338030-8338049 | MS.gene016058:CDS | 30.0% | |
| ! | ACTGATGTTCTTCCTATTTT+TGG | - | chr1.3:8335599-8335618 | MS.gene016058:CDS | 30.0% |
| ! | AGCATTTTAAACCATTCACT+TGG | + | chr1.3:8335380-8335399 | None:intergenic | 30.0% |
| ! | AGCTCAATTTATGTTCTAGA+TGG | - | chr1.3:8335712-8335731 | MS.gene016058:CDS | 30.0% |
| ! | ATATTTTCAATCAGCTCAGT+CGG | - | chr1.3:8339360-8339379 | MS.gene016058:intron | 30.0% |
| ! | ATCTTTTCACCAAAAGTTAC+GGG | - | chr1.3:8338735-8338754 | MS.gene016058:intron | 30.0% |
| ! | CAAATGTTGATGGAATAACA+AGG | - | chr1.3:8338585-8338604 | MS.gene016058:intron | 30.0% |
| ! | CTGCTCATAACTATTACTTT+TGG | - | chr1.3:8336613-8336632 | MS.gene016058:intron | 30.0% |
| ! | GCTCAATTTATGTTCTAGAT+GGG | - | chr1.3:8335713-8335732 | MS.gene016058:CDS | 30.0% |
| ! | TCCTTGAAGGAATGTTTTAT+TGG | - | chr1.3:8337981-8338000 | MS.gene016058:CDS | 30.0% |
| ! | TCTTTCTATTTTCCTCTGAT+CGG | - | chr1.3:8337671-8337690 | MS.gene016058:CDS | 30.0% |
| ! | TTCTCTATGCTCTCTTTTTA+AGG | + | chr1.3:8338363-8338382 | None:intergenic | 30.0% |
| ! | TTTGAGACTGTTTGAGAATT+GGG | - | chr1.3:8339069-8339088 | MS.gene016058:intron | 30.0% |
| !! | CTAATGTCAATTGATAATGC+TGG | - | chr1.3:8339657-8339676 | MS.gene016058:CDS | 30.0% |
| !! | TGATATCTTAGGCTTTGTTT+GGG | - | chr1.3:8335898-8335917 | MS.gene016058:intron | 30.0% |
| !! | TTGATATCTTAGGCTTTGTT+TGG | - | chr1.3:8335897-8335916 | MS.gene016058:intron | 30.0% |
| !! | TTTGGAGTAGTTGTTGTTTA+TGG | - | chr1.3:8335428-8335447 | MS.gene016058:CDS | 30.0% |
| !!! | ATGCATTGGAGTTTTGTTTT+TGG | - | chr1.3:8335410-8335429 | MS.gene016058:CDS | 30.0% |
| !!! | CGAATTTTAAGGCTTTGTTT+GGG | + | chr1.3:8336278-8336297 | None:intergenic | 30.0% |
| !!! | TCATTTTTTTGCTCAGATTC+TGG | + | chr1.3:8335311-8335330 | None:intergenic | 30.0% |
| !!! | TTCTTCCTATTTTTGGATAC+CGG | - | chr1.3:8335606-8335625 | MS.gene016058:CDS | 30.0% |
| !!! | TTTGGTTAGCGATTTTGATT+CGG | - | chr1.3:8339754-8339773 | MS.gene016058:CDS | 30.0% |
| AAAATCAAGAGGCTAACCAT+AGG | + | chr1.3:8337405-8337424 | None:intergenic | 35.0% | |
| AAAGAGTTAGGATCAACTCT+AGG | + | chr1.3:8339822-8339841 | None:intergenic | 35.0% | |
| AAATCAAGAGGCTAACCATA+GGG | + | chr1.3:8337404-8337423 | None:intergenic | 35.0% | |
| AAATGCAAGACAAAGGTTAC+TGG | + | chr1.3:8339315-8339334 | None:intergenic | 35.0% | |
| AAATTGCCAACACAAGATGA+AGG | + | chr1.3:8337197-8337216 | None:intergenic | 35.0% | |
| AAGTCAATCTGGCATTAATC+GGG | - | chr1.3:8336308-8336327 | MS.gene016058:intron | 35.0% | |
| AATCCGGTATACCAAACTTT+AGG | + | chr1.3:8339515-8339534 | None:intergenic | 35.0% | |
| AATGTTCCTTCAATACCAGA+TGG | + | chr1.3:8339627-8339646 | None:intergenic | 35.0% | |
| ACAAAACTTCTCTTACAGAC+AGG | - | chr1.3:8337592-8337611 | MS.gene016058:intron | 35.0% | |
| ACCAAAATTATAAGTCCAGC+TGG | + | chr1.3:8337545-8337564 | None:intergenic | 35.0% | |
| ACTAAAAACAGCATGCAAAG+TGG | + | chr1.3:8339798-8339817 | None:intergenic | 35.0% | |
| AGAAAATGTGGATTCAAAGG+TGG | - | chr1.3:8339857-8339876 | MS.gene016058:CDS | 35.0% | |
| AGAAACCAAGGATGTTGAAT+TGG | - | chr1.3:8339896-8339915 | MS.gene016058:CDS | 35.0% | |
| AGATTGGACTCTTAGTCAAA+AGG | - | chr1.3:8336455-8336474 | MS.gene016058:intron | 35.0% | |
| AGTTGTAAGTGCGGTTTATA+GGG | - | chr1.3:8335867-8335886 | MS.gene016058:intron | 35.0% | |
| ATAGAAGACATTGAGAAGAG+AGG | + | chr1.3:8336197-8336216 | None:intergenic | 35.0% | |
| ATATATATTTGTGGCTGCCA+TGG | - | chr1.3:8338928-8338947 | MS.gene016058:intron | 35.0% | |
| ATCACAACAAAGACGTAATC+CGG | + | chr1.3:8339531-8339550 | None:intergenic | 35.0% | |
| ATGAAACCTATACTTTCCTG+TGG | + | chr1.3:8339342-8339361 | None:intergenic | 35.0% | |
| ATGTCTCAATGATTGCAATG+AGG | + | chr1.3:8336824-8336843 | None:intergenic | 35.0% | |
| ATTCTCAGAAACATCGTAGT+AGG | - | chr1.3:8337711-8337730 | MS.gene016058:intron | 35.0% | |
| CAAAAAGACTCCTAATCACA+AGG | + | chr1.3:8339012-8339031 | None:intergenic | 35.0% | |
| CAAATACCTGTGAGAAAGAT+GGG | + | chr1.3:8338027-8338046 | None:intergenic | 35.0% | |
| CATAAAGGCTTAACAATCCA+AGG | + | chr1.3:8335569-8335588 | None:intergenic | 35.0% | |
| CTGAGTTTGAATATCCTTGA+AGG | - | chr1.3:8337968-8337987 | MS.gene016058:CDS | 35.0% | |
| CTGGAATTACATCTATTCCT+TGG | - | chr1.3:8335549-8335568 | MS.gene016058:CDS | 35.0% | |
| CTTAGATCGCAAGGATATAA+GGG | - | chr1.3:8336864-8336883 | MS.gene016058:intron | 35.0% | |
| CTTATTTATCCTTGAGGTAG+AGG | + | chr1.3:8338980-8338999 | None:intergenic | 35.0% | |
| CTTGGATTGTTAAGCCTTTA+TGG | - | chr1.3:8335567-8335586 | MS.gene016058:CDS | 35.0% | |
| GAACCTAAAGTTTGGTATAC+CGG | - | chr1.3:8339509-8339528 | MS.gene016058:intron | 35.0% | |
| GATATTCAAACTCAGTGCAA+AGG | + | chr1.3:8337963-8337982 | None:intergenic | 35.0% | |
| GCATTTCATCTTCCCTTATA+TGG | - | chr1.3:8338092-8338111 | MS.gene016058:intron | 35.0% | |
| GGAAGAAGAATGAAAGAGTT+AGG | + | chr1.3:8339834-8339853 | None:intergenic | 35.0% | |
| GTCTCACATCTTATAAGATG+TGG | + | chr1.3:8336378-8336397 | None:intergenic | 35.0% | |
| GTCTTGCATCAAATGATAGA+AGG | + | chr1.3:8338213-8338232 | None:intergenic | 35.0% | |
| TAGAAGACATTGAGAAGAGA+GGG | + | chr1.3:8336196-8336215 | None:intergenic | 35.0% | |
| TAGAAGGGTTATAAACGAGA+TGG | - | chr1.3:8336976-8336995 | MS.gene016058:intron | 35.0% | |
| TAGATAAGTTCACTGGAACT+TGG | - | chr1.3:8338688-8338707 | MS.gene016058:intron | 35.0% | |
| TATTGACACTTCAGAAACCA+AGG | - | chr1.3:8339884-8339903 | MS.gene016058:CDS | 35.0% | |
| TCAAAAATTGTATTGGGGGA+GGG | + | chr1.3:8336119-8336138 | None:intergenic | 35.0% | |
| TCAAATACCTGTGAGAAAGA+TGG | + | chr1.3:8338028-8338047 | None:intergenic | 35.0% | |
| TCTCGTTTATAACCCTTCTA+AGG | + | chr1.3:8336976-8336995 | None:intergenic | 35.0% | |
| TCTTCTATTGGTGCACTATT+AGG | - | chr1.3:8337342-8337361 | MS.gene016058:intron | 35.0% | |
| TGAAAACCTTCATCTTGTGT+TGG | - | chr1.3:8337188-8337207 | MS.gene016058:intron | 35.0% | |
| TGAAATTCTCATGTCTACTG+TGG | - | chr1.3:8338175-8338194 | MS.gene016058:intron | 35.0% | |
| TGAAGAATCAAGATGTATGG+AGG | - | chr1.3:8337915-8337934 | MS.gene016058:CDS | 35.0% | |
| TGCACCAATAGAAGAACTAA+AGG | + | chr1.3:8337337-8337356 | None:intergenic | 35.0% | |
| TGCTATCAAGAGAAATGCAT+TGG | - | chr1.3:8335396-8335415 | MS.gene016058:CDS | 35.0% | |
| TGGAAGAAAATGCAAGACAA+AGG | + | chr1.3:8339322-8339341 | None:intergenic | 35.0% | |
| TGGACTTCTTTCATCATCAT+GGG | - | chr1.3:8339677-8339696 | MS.gene016058:CDS | 35.0% | |
| TGGATTGTTAAGCCTTTATG+GGG | - | chr1.3:8335569-8335588 | MS.gene016058:CDS | 35.0% | |
| TTCAATAAGCTCTCCATGAT+AGG | - | chr1.3:8339143-8339162 | MS.gene016058:intron | 35.0% | |
| TTCATGAGACAACCTTAGAA+GGG | - | chr1.3:8336961-8336980 | MS.gene016058:intron | 35.0% | |
| TTTCATGAGACAACCTTAGA+AGG | - | chr1.3:8336960-8336979 | MS.gene016058:intron | 35.0% | |
| TTTCTCCGGTATCCAAAAAT+AGG | + | chr1.3:8335614-8335633 | None:intergenic | 35.0% | |
| TTTGCATCAAGTGAGTTAGA+AGG | - | chr1.3:8338279-8338298 | MS.gene016058:intron | 35.0% | |
| ! | AAGGGTTTTACTTATAGCAG+TGG | - | chr1.3:8338604-8338623 | MS.gene016058:intron | 35.0% |
| ! | ACACAAGATGAAGGTTTTCA+TGG | + | chr1.3:8337188-8337207 | None:intergenic | 35.0% |
| ! | CATTCAGAGACTTACTCTTT+TGG | - | chr1.3:8339430-8339449 | MS.gene016058:intron | 35.0% |
| ! | CTTGTGATTAGGAGTCTTTT+TGG | - | chr1.3:8339010-8339029 | MS.gene016058:intron | 35.0% |
| ! | GAATTTTTGTCGCTCATTGA+TGG | - | chr1.3:8337119-8337138 | MS.gene016058:intron | 35.0% |
| ! | GATTAATGCCAGATTGACTT+AGG | + | chr1.3:8336308-8336327 | None:intergenic | 35.0% |
| ! | GTTTTTGCATTCCAAGTGAA+TGG | - | chr1.3:8335366-8335385 | MS.gene016058:CDS | 35.0% |
| ! | TAGGTCTAACCCGAATTTTA+AGG | + | chr1.3:8336289-8336308 | None:intergenic | 35.0% |
| ! | TCATTTGTACTTTTGCCAAG+TGG | + | chr1.3:8338889-8338908 | None:intergenic | 35.0% |
| ! | TCCAGCTGGACTTATAATTT+TGG | - | chr1.3:8337541-8337560 | MS.gene016058:intron | 35.0% |
| ! | TTGACTCGAAATAAAGCTCT+CGG | + | chr1.3:8338328-8338347 | None:intergenic | 35.0% |
| ! | TTGATGGTTGCAGGTTTATT+AGG | - | chr1.3:8337135-8337154 | MS.gene016058:intron | 35.0% |
| ! | TTTCTTCCACAGGAAAGTAT+AGG | - | chr1.3:8339333-8339352 | MS.gene016058:intron | 35.0% |
| !! | AGTCAAAGGGTGTTAGAATA+TGG | - | chr1.3:8335339-8335358 | MS.gene016058:CDS | 35.0% |
| !! | CTTTGAGACTGTTTGAGAAT+TGG | - | chr1.3:8339068-8339087 | MS.gene016058:intron | 35.0% |
| !! | GCTGGACTTATAATTTTGGT+CGG | - | chr1.3:8337545-8337564 | MS.gene016058:intron | 35.0% |
| !! | TCATCTTGTGTTGGCAATTT+TGG | - | chr1.3:8337197-8337216 | MS.gene016058:CDS | 35.0% |
| !! | TGTGCCTTTAGTTCTTCTAT+TGG | - | chr1.3:8337330-8337349 | MS.gene016058:CDS | 35.0% |
| !! | TGTGTTTCTTATAGTGGATG+TGG | - | chr1.3:8337010-8337029 | MS.gene016058:intron | 35.0% |
| !!! | CCGAATTTTAAGGCTTTGTT+TGG | + | chr1.3:8336279-8336298 | None:intergenic | 35.0% |
| !!! | TTTTGAGTTCCTCCAAATGA+GGG | - | chr1.3:8336133-8336152 | MS.gene016058:intron | 35.0% |
| !!! | TTTTTGAGTTCCTCCAAATG+AGG | - | chr1.3:8336132-8336151 | MS.gene016058:intron | 35.0% |
| AAAAAATCCCCCTCATTTGG+AGG | + | chr1.3:8336145-8336164 | None:intergenic | 40.0% | |
| AAAACCGGTCTTTGAGCATT+TGG | - | chr1.3:8336481-8336500 | MS.gene016058:intron | 40.0% | |
| AAACCGGTCTTTGAGCATTT+GGG | - | chr1.3:8336482-8336501 | MS.gene016058:intron | 40.0% | |
| AACTTTGCATGTCAGAAGCA+AGG | + | chr1.3:8337308-8337327 | None:intergenic | 40.0% | |
| AAGTGGTGCAATTGTTGTGA+AGG | - | chr1.3:8338117-8338136 | MS.gene016058:intron | 40.0% | |
| AATGGGGTCATTATCTCGTT+TGG | - | chr1.3:8336711-8336730 | MS.gene016058:intron | 40.0% | |
| ACCATTGTTCCGTAACATCT+TGG | + | chr1.3:8336741-8336760 | None:intergenic | 40.0% | |
| ACTTTGCATGTCAGAAGCAA+GGG | + | chr1.3:8337307-8337326 | None:intergenic | 40.0% | |
| AGAACGTGGACAAATGTTGA+TGG | - | chr1.3:8338575-8338594 | MS.gene016058:intron | 40.0% | |
| AGACACCAATTCAACATCCT+TGG | + | chr1.3:8339904-8339923 | None:intergenic | 40.0% | |
| AGTTCACTGGAACTTGGTAT+TGG | - | chr1.3:8338694-8338713 | MS.gene016058:intron | 40.0% | |
| AGTTGCTCTATGGTCTATCA+GGG | - | chr1.3:8339457-8339476 | MS.gene016058:intron | 40.0% | |
| ATAGCCCTCACTTTACAAGT+TGG | + | chr1.3:8338487-8338506 | None:intergenic | 40.0% | |
| ATATAAGGGACACAGTCTCT+AGG | - | chr1.3:8336878-8336897 | MS.gene016058:intron | 40.0% | |
| ATGAGCAGGGTTTCAAATTG+CGG | + | chr1.3:8336601-8336620 | None:intergenic | 40.0% | |
| ATTTATCCTTGAGGTAGAGG+CGG | + | chr1.3:8338977-8338996 | None:intergenic | 40.0% | |
| CATTTGCACTTGGATACCAT+GGG | - | chr1.3:8336432-8336451 | MS.gene016058:intron | 40.0% | |
| CCATTGTTCCGTAACATCTT+GGG | + | chr1.3:8336740-8336759 | None:intergenic | 40.0% | |
| CGTGCTTATGGTAATTTCCA+TGG | - | chr1.3:8337807-8337826 | MS.gene016058:intron | 40.0% | |
| CGTTTAGTGAGTTGTAAGTG+CGG | - | chr1.3:8335858-8335877 | MS.gene016058:CDS | 40.0% | |
| CTCAAAAATTGTATTGGGGG+AGG | + | chr1.3:8336120-8336139 | None:intergenic | 40.0% | |
| CTCTCGGAGTACATGTAAAT+GGG | + | chr1.3:8338312-8338331 | None:intergenic | 40.0% | |
| CTGAAAAAGTGGTTCCAAGA+GGG | + | chr1.3:8336354-8336373 | None:intergenic | 40.0% | |
| CTGGACTTCTTTCATCATCA+TGG | - | chr1.3:8339676-8339695 | MS.gene016058:CDS | 40.0% | |
| GAGTTGTAAGTGCGGTTTAT+AGG | - | chr1.3:8335866-8335885 | MS.gene016058:intron | 40.0% | |
| GCAATTGTTGTGAAGGTAGT+GGG | - | chr1.3:8338124-8338143 | MS.gene016058:intron | 40.0% | |
| GCTTAGATCGCAAGGATATA+AGG | - | chr1.3:8336863-8336882 | MS.gene016058:intron | 40.0% | |
| GGAAAAAAGGAATGAGCAAG+TGG | + | chr1.3:8336225-8336244 | None:intergenic | 40.0% | |
| GGAATAAGTCAAGGTTTAGG+TGG | - | chr1.3:8335449-8335468 | MS.gene016058:CDS | 40.0% | |
| GGACTTCTTTCATCATCATG+GGG | - | chr1.3:8339678-8339697 | MS.gene016058:CDS | 40.0% | |
| GGCATCTTTGTTCACCTTAT+AGG | - | chr1.3:8337378-8337397 | MS.gene016058:intron | 40.0% | |
| GGGTTGAAGCTTGATATCTT+AGG | - | chr1.3:8335887-8335906 | MS.gene016058:intron | 40.0% | |
| GTCAAATGTAGCTTCAGTTG+CGG | - | chr1.3:8336798-8336817 | MS.gene016058:intron | 40.0% | |
| TAAGATGTGGCCTGAAAAAG+TGG | + | chr1.3:8336365-8336384 | None:intergenic | 40.0% | |
| TCAGTAAGAAGACCCCATAA+AGG | + | chr1.3:8335584-8335603 | None:intergenic | 40.0% | |
| TCATTTGCACTTGGATACCA+TGG | - | chr1.3:8336431-8336450 | MS.gene016058:intron | 40.0% | |
| TCTTCCCTTATATGGACAAG+TGG | - | chr1.3:8338100-8338119 | MS.gene016058:intron | 40.0% | |
| TGCAATTGTTGTGAAGGTAG+TGG | - | chr1.3:8338123-8338142 | MS.gene016058:intron | 40.0% | |
| TGCACCACTTGTCCATATAA+GGG | + | chr1.3:8338107-8338126 | None:intergenic | 40.0% | |
| TGGTATACAGACTCAAAGGA+TGG | - | chr1.3:8338001-8338020 | MS.gene016058:CDS | 40.0% | |
| TTGCACCACTTGTCCATATA+AGG | + | chr1.3:8338108-8338127 | None:intergenic | 40.0% | |
| TTTGAGCTGAGTACAAGCAT+AGG | + | chr1.3:8339597-8339616 | None:intergenic | 40.0% | |
| ! | ACTTTTGCCATATCTCGATG+TGG | - | chr1.3:8338523-8338542 | MS.gene016058:intron | 40.0% |
| ! | ACTTTTGGCGCTTTTGCTTT+TGG | - | chr1.3:8336628-8336647 | MS.gene016058:intron | 40.0% |
| ! | ATACTCGAACCCGTAACTTT+TGG | + | chr1.3:8338747-8338766 | None:intergenic | 40.0% |
| ! | ATTAATCGGGTTGTAAGGTG+AGG | - | chr1.3:8336321-8336340 | MS.gene016058:intron | 40.0% |
| ! | CTTTGTCCATCTGGTATTGA+AGG | - | chr1.3:8339618-8339637 | MS.gene016058:CDS | 40.0% |
| ! | CTTTTGCCATATCTCGATGT+GGG | - | chr1.3:8338524-8338543 | MS.gene016058:intron | 40.0% |
| ! | GGTTTTACTTATAGCAGTGG+CGG | - | chr1.3:8338607-8338626 | MS.gene016058:intron | 40.0% |
| ! | TAGGTGTTATATTAGGGCCA+TGG | + | chr1.3:8337827-8337846 | None:intergenic | 40.0% |
| ! | TCTCTTGTACACAGTGTTGA+TGG | - | chr1.3:8339921-8339940 | MS.gene016058:CDS | 40.0% |
| ! | TGAGAATTGGGAGAGCATAT+GGG | - | chr1.3:8339081-8339100 | MS.gene016058:intron | 40.0% |
| ! | TGTCTTGCATTTTCTTCCAC+AGG | - | chr1.3:8339323-8339342 | MS.gene016058:intron | 40.0% |
| ! | TTAATCGGGTTGTAAGGTGA+GGG | - | chr1.3:8336322-8336341 | MS.gene016058:intron | 40.0% |
| ! | TTGAGAATTGGGAGAGCATA+TGG | - | chr1.3:8339080-8339099 | MS.gene016058:intron | 40.0% |
| ! | TTTGAGTTCCTCCAAATGAG+GGG | - | chr1.3:8336134-8336153 | MS.gene016058:intron | 40.0% |
| ! | TTTGGCTTCCCAAGATGTTA+CGG | - | chr1.3:8336729-8336748 | MS.gene016058:intron | 40.0% |
| ! | TTTTGATATCTGCTAGGCCA+CGG | - | chr1.3:8336523-8336542 | MS.gene016058:intron | 40.0% |
| ! | TTTTGGACTCAGTTGCTCTA+TGG | - | chr1.3:8339447-8339466 | MS.gene016058:intron | 40.0% |
| !! | CAAGGGTTTTGATATCTGCT+AGG | - | chr1.3:8336517-8336536 | MS.gene016058:intron | 40.0% |
| !! | CGTAATCCTTTAGAGCGTAT+TGG | + | chr1.3:8339410-8339429 | None:intergenic | 40.0% |
| !! | CTTTTGGCGCTTTTGCTTTT+GGG | - | chr1.3:8336629-8336648 | MS.gene016058:intron | 40.0% |
| !! | TAAGGCTTTGTTTGGGAGTT+TGG | + | chr1.3:8336271-8336290 | None:intergenic | 40.0% |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | - | chr1.3:8335905-8335924 | MS.gene016058:intron | 40.0% |
| !!! | CAATTTTGGCCTTAACAGCA+GGG | - | chr1.3:8337211-8337230 | MS.gene016058:CDS | 40.0% |
| !!! | TTTTTCTCATAGGGGGTGTT+TGG | - | chr1.3:8337506-8337525 | MS.gene016058:intron | 40.0% |
| ACATTGAGAAGAGAGGGCTT+TGG | + | chr1.3:8336190-8336209 | None:intergenic | 45.0% | |
| ACTAAGAGTCCAATCTCCCA+TGG | + | chr1.3:8336451-8336470 | None:intergenic | 45.0% | |
| ACTTGGATACCATGGGAGAT+TGG | - | chr1.3:8336439-8336458 | MS.gene016058:intron | 45.0% | |
| ATGGTAGAACAGCGACGATT+AGG | + | chr1.3:8339169-8339188 | None:intergenic | 45.0% | |
| CACCAAAACTTTGTGGATGC+CGG | - | chr1.3:8337872-8337891 | MS.gene016058:CDS | 45.0% | |
| CAGTTGCTCTATGGTCTATC+AGG | - | chr1.3:8339456-8339475 | MS.gene016058:intron | 45.0% | |
| CCCAAGATGTTACGGAACAA+TGG | - | chr1.3:8336737-8336756 | MS.gene016058:intron | 45.0% | |
| CCTGAAAAAGTGGTTCCAAG+AGG | + | chr1.3:8336355-8336374 | None:intergenic | 45.0% | |
| CTAGGTGCACCAAAACTTTG+TGG | - | chr1.3:8337865-8337884 | MS.gene016058:CDS | 45.0% | |
| CTCAACACACTCTCATGTTC+AGG | - | chr1.3:8338549-8338568 | MS.gene016058:intron | 45.0% | |
| CTGTGCAACACATGCATCAA+TGG | + | chr1.3:8337265-8337284 | None:intergenic | 45.0% | |
| CTTCTTTCATCATCATGGGG+TGG | - | chr1.3:8339681-8339700 | MS.gene016058:CDS | 45.0% | |
| GCATAAACCTGTGCTTCAGA+AGG | + | chr1.3:8335530-8335549 | None:intergenic | 45.0% | |
| GCTCTCGGAGTACATGTAAA+TGG | + | chr1.3:8338313-8338332 | None:intergenic | 45.0% | |
| GGGTTAGACCTAAGTCAATC+TGG | - | chr1.3:8336297-8336316 | MS.gene016058:intron | 45.0% | |
| TCATGTTCAGGACTAGAACG+TGG | - | chr1.3:8338561-8338580 | MS.gene016058:intron | 45.0% | |
| TGAGATCCCACATCGAGATA+TGG | + | chr1.3:8338533-8338552 | None:intergenic | 45.0% | |
| TGTTCACCTTATAGGCCCTA+TGG | - | chr1.3:8337386-8337405 | MS.gene016058:intron | 45.0% | |
| TTGAGTTCCTCCAAATGAGG+GGG | - | chr1.3:8336135-8336154 | MS.gene016058:intron | 45.0% | |
| ! | AGCTCAAAGCTTTGTCCATC+TGG | - | chr1.3:8339609-8339628 | MS.gene016058:CDS | 45.0% |
| ! | CTGGCATTAATCGGGTTGTA+AGG | - | chr1.3:8336316-8336335 | MS.gene016058:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr1.3:8335910-8335929 | MS.gene016058:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr1.3:8335929-8335910 | None:intergenic | 45.0% |
| ! | GGTTTGATGACTATTCCAGC+TGG | - | chr1.3:8337527-8337546 | MS.gene016058:intron | 45.0% |
| ! | TCTGAAGCACAGGTTTATGC+TGG | - | chr1.3:8335530-8335549 | MS.gene016058:CDS | 45.0% |
| ! | TGTATTGGGGGAGGGTTTTA+GGG | + | chr1.3:8336111-8336130 | None:intergenic | 45.0% |
| ! | TTGTATTGGGGGAGGGTTTT+AGG | + | chr1.3:8336112-8336131 | None:intergenic | 45.0% |
| !! | AGTTCAACCTTCTGAAGCAC+AGG | - | chr1.3:8335520-8335539 | MS.gene016058:CDS | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr1.3:8335909-8335928 | MS.gene016058:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr1.3:8335928-8335909 | None:intergenic | 45.0% |
| !! | TTGTTGTGAAGGTAGTGGGT+TGG | - | chr1.3:8338128-8338147 | MS.gene016058:intron | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | + | chr1.3:8336238-8336257 | None:intergenic | 45.0% |
| !!! | CCTCTTGGAACCACTTTTTC+AGG | - | chr1.3:8336352-8336371 | MS.gene016058:intron | 45.0% |
| !!! | GCAATTTTGGCCTTAACAGC+AGG | - | chr1.3:8337210-8337229 | MS.gene016058:CDS | 45.0% |
| AAACTTTGTGGATGCCGGCA+AGG | - | chr1.3:8337877-8337896 | MS.gene016058:CDS | 50.0% | |
| AGCGACGATTAGGCCTATCA+TGG | + | chr1.3:8339159-8339178 | None:intergenic | 50.0% | |
| AGGTATGCACGTTCGTACCT+TGG | + | chr1.3:8338843-8338862 | None:intergenic | 50.0% | |
| ATGTCGCAGCTTAGATCGCA+AGG | - | chr1.3:8336855-8336874 | MS.gene016058:intron | 50.0% | |
| CCACCCAAATGCTCAAAGAC+CGG | + | chr1.3:8336488-8336507 | None:intergenic | 50.0% | |
| CGATCTAAGCTGCGACATCA+AGG | + | chr1.3:8336853-8336872 | None:intergenic | 50.0% | |
| CGTGCATACCTCTGCTTAAC+AGG | - | chr1.3:8338852-8338871 | MS.gene016058:intron | 50.0% | |
| CTTGTGCATGATCCGATCAG+AGG | + | chr1.3:8337686-8337705 | None:intergenic | 50.0% | |
| CTTTCATCATCATGGGGTGG+TGG | - | chr1.3:8339684-8339703 | MS.gene016058:CDS | 50.0% | |
| GGCTAACCATAGGGCCTATA+AGG | + | chr1.3:8337395-8337414 | None:intergenic | 50.0% | |
| GTCAGAAGCAAGGGAAGGAT+GGG | + | chr1.3:8337298-8337317 | None:intergenic | 50.0% | |
| TGCATGTCAGAAGCAAGGGA+AGG | + | chr1.3:8337303-8337322 | None:intergenic | 50.0% | |
| TGTCAGAAGCAAGGGAAGGA+TGG | + | chr1.3:8337299-8337318 | None:intergenic | 50.0% | |
| TTCAAACACGACCTGATCCG+TGG | + | chr1.3:8336543-8336562 | None:intergenic | 50.0% | |
| TTGGGTGGTTGCGACTTCAA+GGG | - | chr1.3:8336500-8336519 | MS.gene016058:intron | 50.0% | |
| TTTGGGTGGTTGCGACTTCA+AGG | - | chr1.3:8336499-8336518 | MS.gene016058:intron | 50.0% | |
| ! | TGCCGGCATCCACAAAGTTT+TGG | + | chr1.3:8337877-8337896 | None:intergenic | 50.0% |
| ! | TGTAGTCCACATAGCCTTGC+CGG | + | chr1.3:8337894-8337913 | None:intergenic | 50.0% |
| ! | TGTCGCTCATTGATGGTTGC+AGG | - | chr1.3:8337126-8337145 | MS.gene016058:intron | 50.0% |
| ! | TTGAGAAGAGAGGGCTTTGG+AGG | + | chr1.3:8336187-8336206 | None:intergenic | 50.0% |
| !! | AGCTCAGTCGGTTCCCTTTT+AGG | - | chr1.3:8339372-8339391 | MS.gene016058:intron | 50.0% |
| !! | CTTTTGCTTTTGGGTGGGTG+GGG | - | chr1.3:8336638-8336657 | MS.gene016058:intron | 50.0% |
| !! | GCTTTTGCTTTTGGGTGGGT+GGG | - | chr1.3:8336637-8336656 | MS.gene016058:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr1.3:8335908-8335927 | MS.gene016058:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr1.3:8335927-8335908 | None:intergenic | 50.0% |
| !! | GTATTGGGGGAGGGTTTTAG+GGG | + | chr1.3:8336110-8336129 | None:intergenic | 50.0% |
| !! | TGGCGCTTTTGCTTTTGGGT+GGG | - | chr1.3:8336633-8336652 | MS.gene016058:intron | 50.0% |
| !! | TTGGCGCTTTTGCTTTTGGG+TGG | - | chr1.3:8336632-8336651 | MS.gene016058:intron | 50.0% |
| !!! | AGGGTTTTAGGGGGTTATGG+AGG | + | chr1.3:8336100-8336119 | None:intergenic | 50.0% |
| !!! | GGGTTTTAGGGGGTTATGGA+GGG | + | chr1.3:8336099-8336118 | None:intergenic | 50.0% |
| !!! | TATTGGGGGAGGGTTTTAGG+GGG | + | chr1.3:8336109-8336128 | None:intergenic | 50.0% |
| CCGGTCTTTGAGCATTTGGG+TGG | - | chr1.3:8336485-8336504 | MS.gene016058:intron | 55.0% | |
| GGATGGCCCATCTTTCTCAC+AGG | - | chr1.3:8338018-8338037 | MS.gene016058:CDS | 55.0% | |
| GGTTTAGGTGGTGCTCTTGC+TGG | - | chr1.3:8335461-8335480 | MS.gene016058:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | - | chr1.3:8335914-8335933 | MS.gene016058:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr1.3:8335933-8335914 | None:intergenic | 55.0% | |
| TATCTGCTAGGCCACGGATC+AGG | - | chr1.3:8336529-8336548 | MS.gene016058:intron | 55.0% | |
| TCCAGCACTCCCTGCTGTTA+AGG | + | chr1.3:8337223-8337242 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | - | chr1.3:8335913-8335932 | MS.gene016058:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr1.3:8335932-8335913 | None:intergenic | 55.0% | |
| TTTGCCAAGTGGCTATGCGC+AGG | + | chr1.3:8338878-8338897 | None:intergenic | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr1.3:8335934-8335915 | None:intergenic | 55.0% | |
| !! | CGCTTTTGCTTTTGGGTGGG+TGG | - | chr1.3:8336636-8336655 | MS.gene016058:intron | 55.0% |
| !!! | GGGAGGGTTTTAGGGGGTTA+TGG | + | chr1.3:8336103-8336122 | None:intergenic | 55.0% |
| AGGCGGAGCTTCCTTGTGAC+AGG | + | chr1.3:8338960-8338979 | None:intergenic | 60.0% | |
| CATGGCATCCCCCTGTCACA+AGG | - | chr1.3:8338946-8338965 | MS.gene016058:intron | 60.0% | |
| CGGAGCTTCCTTGTGACAGG+GGG | + | chr1.3:8338957-8338976 | None:intergenic | 60.0% | |
| CTTGTGACAGGGGGATGCCA+TGG | + | chr1.3:8338948-8338967 | None:intergenic | 60.0% | |
| GAAGCTCCGCCTCTACCTCA+AGG | - | chr1.3:8338968-8338987 | MS.gene016058:intron | 60.0% | |
| GAGTTTGGAGGGGAGGGCTT+TGG | - | chr1.3:8335920-8335939 | MS.gene016058:intron | 60.0% | |
| GCGGAGCTTCCTTGTGACAG+GGG | + | chr1.3:8338958-8338977 | None:intergenic | 60.0% | |
| GGCGGAGCTTCCTTGTGACA+GGG | + | chr1.3:8338959-8338978 | None:intergenic | 60.0% | |
| GGTGAGGGATGTCTCCCTCT+TGG | - | chr1.3:8336337-8336356 | MS.gene016058:intron | 60.0% | |
| GGTGGTGCTCTTGCTGGTGT+TGG | - | chr1.3:8335467-8335486 | MS.gene016058:CDS | 60.0% | |
| TGCGCAGGCCTGTTAAGCAG+AGG | + | chr1.3:8338863-8338882 | None:intergenic | 60.0% | |
| TGGATGCCGGCAAGGCTATG+TGG | - | chr1.3:8337885-8337904 | MS.gene016058:CDS | 60.0% | |
| ! | GCCTTAACAGCAGGGAGTGC+TGG | - | chr1.3:8337219-8337238 | MS.gene016058:CDS | 60.0% |
| ! | TTTGGAGGGGAGGGCTTTGG+AGG | - | chr1.3:8335923-8335942 | MS.gene016058:intron | 60.0% |
| !! | AACAGCAGGGAGTGCTGGAG+TGG | - | chr1.3:8337224-8337243 | MS.gene016058:CDS | 60.0% |
| !! | TTGGAGGGGAGGGCTTTGGA+GGG | - | chr1.3:8335924-8335943 | MS.gene016058:intron | 60.0% |
| CAGGCCTGCGCATAGCCACT+TGG | - | chr1.3:8338871-8338890 | MS.gene016058:intron | 65.0% | |
| GAGTTTGGAGGGGAGGGGAG+GGG | + | chr1.3:8336256-8336275 | None:intergenic | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+GGG | + | chr1.3:8336257-8336276 | None:intergenic | 65.0% | |
| !! | AGGGGAGGGCTTTGGAGGGT+TGG | - | chr1.3:8335928-8335947 | MS.gene016058:intron | 65.0% |
| GGGAGTTTGGAGGGGAGGGG+AGG | + | chr1.3:8336258-8336277 | None:intergenic | 70.0% | |
| TTGGAGGGGAGGGGAGGGGA+GGG | + | chr1.3:8336252-8336271 | None:intergenic | 70.0% | |
| TTTGGAGGGGAGGGGAGGGG+AGG | + | chr1.3:8336253-8336272 | None:intergenic | 70.0% | |
| ! | GGGAGGGGAGGGGAGGGTTT+TGG | + | chr1.3:8336246-8336265 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 8335275 | 8339953 | 8335275 | ID=MS.gene016058 |
| chr1.3 | mRNA | 8335275 | 8339953 | 8335275 | ID=MS.gene016058.t1;Parent=MS.gene016058 |
| chr1.3 | exon | 8339575 | 8339953 | 8339575 | ID=MS.gene016058.t1.exon1;Parent=MS.gene016058.t1 |
| chr1.3 | CDS | 8339575 | 8339953 | 8339575 | ID=cds.MS.gene016058.t1;Parent=MS.gene016058.t1 |
| chr1.3 | exon | 8337821 | 8338080 | 8337821 | ID=MS.gene016058.t1.exon2;Parent=MS.gene016058.t1 |
| chr1.3 | CDS | 8337821 | 8338080 | 8337821 | ID=cds.MS.gene016058.t1;Parent=MS.gene016058.t1 |
| chr1.3 | exon | 8337615 | 8337710 | 8337615 | ID=MS.gene016058.t1.exon3;Parent=MS.gene016058.t1 |
| chr1.3 | CDS | 8337615 | 8337710 | 8337615 | ID=cds.MS.gene016058.t1;Parent=MS.gene016058.t1 |
| chr1.3 | exon | 8337189 | 8337359 | 8337189 | ID=MS.gene016058.t1.exon4;Parent=MS.gene016058.t1 |
| chr1.3 | CDS | 8337189 | 8337359 | 8337189 | ID=cds.MS.gene016058.t1;Parent=MS.gene016058.t1 |
| chr1.3 | exon | 8335275 | 8335883 | 8335275 | ID=MS.gene016058.t1.exon5;Parent=MS.gene016058.t1 |
| chr1.3 | CDS | 8335275 | 8335883 | 8335275 | ID=cds.MS.gene016058.t1;Parent=MS.gene016058.t1 |
| Gene Sequence |
| Protein sequence |
