Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94353.t1 | XP_003600052.1 | 96.7 | 425 | 14 | 0 | 5 | 429 | 71 | 495 | 5.60E-214 | 753.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94353.t1 | Q8RWQ5 | 64.9 | 425 | 144 | 2 | 5 | 429 | 71 | 490 | 7.8e-140 | 498.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94353.t1 | G7IXK2 | 96.7 | 425 | 14 | 0 | 5 | 429 | 71 | 495 | 4.0e-214 | 753.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene94353 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene94353 | 0.803645 | 3.16E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene94353 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene94353 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene94353 | -0.813318 | 2.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016060 | MS.gene94353 | PPI |
| MS.gene94353 | MS.gene016058 | PPI |
| MS.gene33133 | MS.gene94353 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94353.t1 | MTR_3g051190 | 98.353 | 425 | 7 | 0 | 5 | 429 | 71 | 495 | 0.0 | 844 |
| MS.gene94353.t1 | MTR_2g031810 | 27.094 | 406 | 223 | 6 | 25 | 422 | 9 | 349 | 1.68e-39 | 145 |
| MS.gene94353.t1 | MTR_2g031790 | 36.190 | 210 | 134 | 0 | 213 | 422 | 117 | 326 | 1.76e-38 | 142 |
| MS.gene94353.t1 | MTR_3g008470 | 28.297 | 417 | 241 | 6 | 5 | 421 | 156 | 514 | 1.66e-37 | 144 |
| MS.gene94353.t1 | MTR_1g014250 | 26.133 | 375 | 209 | 6 | 52 | 422 | 29 | 339 | 4.50e-30 | 120 |
| MS.gene94353.t1 | MTR_1g014250 | 33.333 | 198 | 127 | 2 | 229 | 422 | 266 | 462 | 6.54e-28 | 115 |
| MS.gene94353.t1 | MTR_1g103530 | 27.500 | 320 | 174 | 6 | 7 | 326 | 4 | 265 | 4.75e-19 | 89.4 |
| MS.gene94353.t1 | MTR_1g103530 | 27.011 | 348 | 190 | 7 | 6 | 353 | 168 | 451 | 3.76e-18 | 87.4 |
| MS.gene94353.t1 | MTR_2g031770 | 29.371 | 143 | 92 | 2 | 5 | 139 | 78 | 219 | 6.56e-16 | 77.4 |
| MS.gene94353.t1 | MTR_1g103540 | 44.318 | 88 | 41 | 2 | 328 | 410 | 1 | 85 | 4.31e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94353.t1 | AT5G54860 | 63.765 | 425 | 149 | 2 | 5 | 429 | 71 | 490 | 0.0 | 547 |
| MS.gene94353.t1 | AT2G33280 | 28.132 | 423 | 244 | 4 | 5 | 426 | 31 | 394 | 3.01e-37 | 141 |
| MS.gene94353.t1 | AT2G32040 | 29.383 | 405 | 227 | 6 | 6 | 410 | 51 | 396 | 4.91e-37 | 140 |
| MS.gene94353.t1 | AT2G32040 | 29.136 | 405 | 228 | 6 | 6 | 410 | 182 | 527 | 2.83e-36 | 140 |
| MS.gene94353.t1 | AT1G04570 | 33.962 | 212 | 140 | 0 | 210 | 421 | 137 | 348 | 1.13e-34 | 133 |
| MS.gene94353.t1 | AT1G64890 | 34.906 | 212 | 138 | 0 | 213 | 424 | 221 | 432 | 6.72e-34 | 132 |
| MS.gene94353.t1 | AT1G04570 | 33.962 | 212 | 140 | 0 | 210 | 421 | 285 | 496 | 2.03e-33 | 132 |
| MS.gene94353.t1 | AT5G10820 | 25.000 | 420 | 250 | 6 | 5 | 421 | 114 | 471 | 6.15e-32 | 127 |
| MS.gene94353.t1 | AT1G79710 | 24.471 | 425 | 245 | 7 | 5 | 422 | 106 | 461 | 7.46e-32 | 127 |
| MS.gene94353.t1 | AT1G79710 | 24.471 | 425 | 245 | 7 | 5 | 422 | 106 | 461 | 7.46e-32 | 127 |
| MS.gene94353.t1 | AT2G33280 | 32.243 | 214 | 145 | 0 | 213 | 426 | 107 | 320 | 1.68e-31 | 124 |
| MS.gene94353.t1 | AT5G25040 | 25.701 | 428 | 258 | 11 | 5 | 422 | 103 | 480 | 2.16e-30 | 123 |
| MS.gene94353.t1 | AT2G33280 | 32.243 | 214 | 145 | 0 | 213 | 426 | 289 | 502 | 2.44e-30 | 123 |
| MS.gene94353.t1 | AT5G25050 | 29.612 | 206 | 142 | 1 | 220 | 422 | 252 | 457 | 3.56e-26 | 110 |
| MS.gene94353.t1 | AT5G25040 | 27.442 | 215 | 153 | 1 | 211 | 422 | 94 | 308 | 5.24e-26 | 108 |
| MS.gene94353.t1 | AT5G25040 | 27.442 | 215 | 153 | 1 | 211 | 422 | 241 | 455 | 2.97e-25 | 108 |
| MS.gene94353.t1 | AT5G25040 | 26.230 | 183 | 132 | 1 | 211 | 390 | 241 | 423 | 5.12e-17 | 83.2 |
| MS.gene94353.t1 | AT1G79710 | 20.442 | 362 | 212 | 7 | 5 | 359 | 106 | 398 | 8.99e-15 | 76.3 |
Find 88 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGGTCTCCTGCAAATT+TGG | 0.210403 | 3.2:-43688579 | None:intergenic |
| CTCCAGAATCTTTGATTTGC+TGG | 0.214152 | 3.2:-43688921 | None:intergenic |
| TCTGACTGTATCCCGATTAA+AGG | 0.215461 | 3.2:+43687734 | MS.gene94353:CDS |
| GATGCACCTGTTGCTTCTTT+TGG | 0.267349 | 3.2:-43691018 | None:intergenic |
| ATGCCTTTCCTAATCTTATC+TGG | 0.289468 | 3.2:+43690790 | MS.gene94353:CDS |
| ATCCGCTTACTTCCTTTAAT+CGG | 0.294910 | 3.2:-43687746 | None:intergenic |
| TTTGGCTCAGCGCTTGTTGA+TGG | 0.315027 | 3.2:+43689777 | MS.gene94353:CDS |
| TTCTAAGAGTCATATGCTTT+AGG | 0.317321 | 3.2:-43689561 | None:intergenic |
| TACCAGCAAATCAAAGATTC+TGG | 0.324593 | 3.2:+43688919 | MS.gene94353:CDS |
| TTGGTCAGGGCCAAATTTGC+AGG | 0.328122 | 3.2:+43688569 | MS.gene94353:intron |
| GGAATATGCGGGAGTTTGTT+AGG | 0.329268 | 3.2:+43688632 | MS.gene94353:CDS |
| ATCATAAATTGCTTTCTTCA+AGG | 0.340461 | 3.2:-43688978 | None:intergenic |
| AATAATGTTCCTTCAATTCC+TGG | 0.345409 | 3.2:-43690826 | None:intergenic |
| AACAACTTGGGAACAACAAT+AGG | 0.355575 | 3.2:+43690868 | MS.gene94353:CDS |
| GATAGGGTTATGGTGCTCTT+TGG | 0.362387 | 3.2:+43689759 | MS.gene94353:CDS |
| GAATAAGACTGTTGAAAGAT+TGG | 0.368387 | 3.2:-43689434 | None:intergenic |
| TCTATATTGAACATAGATTC+AGG | 0.374425 | 3.2:+43690916 | MS.gene94353:CDS |
| AAAGCTCGAAGCATCGTTCT+TGG | 0.380680 | 3.2:+43689477 | MS.gene94353:CDS |
| AAGTAAGCGGATTTCGTACT+TGG | 0.393076 | 3.2:+43687757 | MS.gene94353:CDS |
| ATTGATTACCTCAAAATCAT+TGG | 0.394014 | 3.2:-43689022 | None:intergenic |
| ATCATTATCTTGGTCTTCAA+TGG | 0.396384 | 3.2:+43688601 | MS.gene94353:CDS |
| ATCTTGGTCTTCAATGGCTG+TGG | 0.396603 | 3.2:+43688607 | MS.gene94353:CDS |
| AAGCTCGAAGCATCGTTCTT+GGG | 0.399090 | 3.2:+43689478 | MS.gene94353:CDS |
| TGGTGTACCAGATAGGGTTA+TGG | 0.401954 | 3.2:+43689749 | MS.gene94353:CDS |
| TCCGCTTACTTCCTTTAATC+GGG | 0.406523 | 3.2:-43687745 | None:intergenic |
| GTACGCGTTGTTGGTTGGTT+AGG | 0.409250 | 3.2:+43689505 | MS.gene94353:CDS |
| AAGAGCACCATAACCCTATC+TGG | 0.416214 | 3.2:-43689756 | None:intergenic |
| TAGTTTGGTTAATGATGAAC+AGG | 0.416959 | 3.2:+43687705 | None:intergenic |
| GAATATGCGGGAGTTTGTTA+GGG | 0.418448 | 3.2:+43688633 | MS.gene94353:CDS |
| TTGGGGACAGTACGCGTTGT+TGG | 0.424258 | 3.2:+43689496 | MS.gene94353:CDS |
| GCAAAGGATTTGCATACAAA+TGG | 0.433365 | 3.2:+43688791 | MS.gene94353:CDS |
| TTGAAGACCAAGATAATGAT+TGG | 0.443377 | 3.2:-43688598 | None:intergenic |
| AATAAGACTGTTGAAAGATT+GGG | 0.450409 | 3.2:-43689433 | None:intergenic |
| CTATGTCCTCCAGGAATTGA+AGG | 0.451226 | 3.2:+43690817 | MS.gene94353:CDS |
| CTGTGCTCTCCCTTGTACCA+TGG | 0.460291 | 3.2:+43687789 | MS.gene94353:CDS |
| TTTCATGTCAATAAACAACT+TGG | 0.464904 | 3.2:+43690855 | MS.gene94353:CDS |
| ATAGTTGTCCAGATAAGATT+AGG | 0.465222 | 3.2:-43690798 | None:intergenic |
| GAGACCTCCAATCATTATCT+TGG | 0.465996 | 3.2:+43688591 | MS.gene94353:CDS |
| ATCAGAAACAGAAAAGCAAT+TGG | 0.472771 | 3.2:-43690994 | None:intergenic |
| ACAACTTGGGAACAACAATA+GGG | 0.475196 | 3.2:+43690869 | MS.gene94353:CDS |
| TGGAGGACAGACCTATGTCT+TGG | 0.476709 | 3.2:+43689386 | MS.gene94353:intron |
| TTCTTGACTGTGCAAAACTT+AGG | 0.479731 | 3.2:+43687866 | MS.gene94353:CDS |
| AAATTGCTTTCTTCAAGGAA+TGG | 0.479777 | 3.2:-43688973 | None:intergenic |
| TGCAAATTGCCGTTGTGTCT+AGG | 0.486961 | 3.2:+43689712 | MS.gene94353:CDS |
| CTAAAATAAACCATGGTACA+AGG | 0.490097 | 3.2:-43687799 | None:intergenic |
| CTGATACCAAAAGAAGCAAC+AGG | 0.498367 | 3.2:+43691012 | MS.gene94353:CDS |
| CAGGTATGCTCATGTTGCGT+TGG | 0.512392 | 3.2:+43689674 | MS.gene94353:intron |
| TCTGGACAACTATGTCCTCC+AGG | 0.517815 | 3.2:+43690808 | MS.gene94353:CDS |
| TCTGGAGAAAGAAGACTCCT+TGG | 0.519196 | 3.2:+43688937 | MS.gene94353:CDS |
| TCTTGGTCTTCAATGGCTGT+GGG | 0.522835 | 3.2:+43688608 | MS.gene94353:CDS |
| TTCATGTCAATAAACAACTT+GGG | 0.529203 | 3.2:+43690856 | MS.gene94353:CDS |
| GAGTCATATGCTTTAGGTGA+CGG | 0.542071 | 3.2:-43689555 | None:intergenic |
| TGGGAACAGTGATGTGGGCA+AGG | 0.546395 | 3.2:-43689414 | None:intergenic |
| GGACAGTACGCGTTGTTGGT+TGG | 0.546911 | 3.2:+43689500 | MS.gene94353:CDS |
| CATGATAATAACTGTATGCA+AGG | 0.547185 | 3.2:-43688713 | None:intergenic |
| AGTTGAGGATTATATTGCAA+AGG | 0.550493 | 3.2:+43688775 | MS.gene94353:CDS |
| ATGGAACCACTTTGTTGCCA+AGG | 0.553047 | 3.2:-43688954 | None:intergenic |
| CTTGTCATATCTTACAGCCT+CGG | 0.554473 | 3.2:-43687927 | None:intergenic |
| AGCTCGAAGCATCGTTCTTG+GGG | 0.557659 | 3.2:+43689479 | MS.gene94353:CDS |
| AGTCTTATTCTACTACGAAA+CGG | 0.561877 | 3.2:+43689447 | MS.gene94353:CDS |
| GCACAGTCAAGAATACCATC+AGG | 0.566177 | 3.2:-43687856 | None:intergenic |
| TTGCATACAAATGGTAGTAG+TGG | 0.583089 | 3.2:+43688800 | MS.gene94353:CDS |
| AATATGCGGGAGTTTGTTAG+GGG | 0.585466 | 3.2:+43688634 | MS.gene94353:CDS |
| GGTTGGTTAGGACTTATGCT+CGG | 0.594212 | 3.2:+43689517 | MS.gene94353:CDS |
| GAATTCAACATGGCACCTGA+TGG | 0.602006 | 3.2:+43687841 | MS.gene94353:CDS |
| ATGGCTGTGGGAGGAATATG+CGG | 0.607957 | 3.2:+43688620 | MS.gene94353:CDS |
| TGTCCAGATAAGATTAGGAA+AGG | 0.608005 | 3.2:-43690793 | None:intergenic |
| TAAAATAAACCATGGTACAA+GGG | 0.610741 | 3.2:-43687798 | None:intergenic |
| CAACCTTGAGGAATTCAACA+TGG | 0.615312 | 3.2:+43687831 | MS.gene94353:CDS |
| TGGTCTTCAATGGCTGTGGG+AGG | 0.618541 | 3.2:+43688611 | MS.gene94353:CDS |
| GTGCCATGTTGAATTCCTCA+AGG | 0.618903 | 3.2:-43687834 | None:intergenic |
| AAGACCAAGATAATGATTGG+AGG | 0.620304 | 3.2:-43688595 | None:intergenic |
| AAAGATTGGGAACAGTGATG+TGG | 0.621664 | 3.2:-43689420 | None:intergenic |
| ATCAACAACAACATCTGCCA+TGG | 0.622174 | 3.2:-43687894 | None:intergenic |
| AATTTGCAGAAGATTCAAGA+AGG | 0.629335 | 3.2:-43689697 | None:intergenic |
| CTTAAACCTAAAATAAACCA+TGG | 0.629672 | 3.2:-43687806 | None:intergenic |
| TAGGTGACGGTTATAAACGA+AGG | 0.632468 | 3.2:-43689542 | None:intergenic |
| TAGGTTTAAGTTCAACCTTG+AGG | 0.633543 | 3.2:+43687819 | MS.gene94353:CDS |
| TGGCTGTGGGAGGAATATGC+GGG | 0.640200 | 3.2:+43688621 | MS.gene94353:CDS |
| AAGACTCCTTGGCAACAAAG+TGG | 0.652046 | 3.2:+43688948 | MS.gene94353:CDS |
| AAGATTGGGAACAGTGATGT+GGG | 0.654347 | 3.2:-43689419 | None:intergenic |
| TAAAACTTCGCTATTTACAG+AGG | 0.655075 | 3.2:-43688753 | None:intergenic |
| TCCCGATTAAAGGAAGTAAG+CGG | 0.662912 | 3.2:+43687744 | MS.gene94353:CDS |
| GCAAAACTTAGGATCAGCCA+TGG | 0.664884 | 3.2:+43687877 | MS.gene94353:CDS |
| AATGTTCCTTCAATTCCTGG+AGG | 0.693350 | 3.2:-43690823 | None:intergenic |
| CTTATTCTACTACGAAACGG+AGG | 0.704156 | 3.2:+43689450 | MS.gene94353:CDS |
| TGTTGATGCAATGATAGCCG+AGG | 0.712172 | 3.2:+43687910 | MS.gene94353:CDS |
| ATATGCGGGAGTTTGTTAGG+GGG | 0.728603 | 3.2:+43688635 | MS.gene94353:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATAATTATATATGAA+TGG | - | chr3.2:43689136-43689155 | None:intergenic | 10.0% |
| !! | TCATATATAATTATAGTTTA+TGG | + | chr3.2:43689137-43689156 | MS.gene94353:intron | 10.0% |
| !!! | ATAACCTAATATTTTATATA+GGG | + | chr3.2:43690265-43690284 | MS.gene94353:intron | 10.0% |
| !!! | TATAACCTAATATTTTATAT+AGG | + | chr3.2:43690264-43690283 | MS.gene94353:intron | 10.0% |
| !!! | TGTGTTTATTTTTTTATTTA+TGG | + | chr3.2:43689294-43689313 | MS.gene94353:intron | 10.0% |
| !! | AAAAAAAATACTATCTTTCA+GGG | - | chr3.2:43690027-43690046 | None:intergenic | 15.0% |
| !! | TCTAATAAAAAGTAATGTTT+CGG | + | chr3.2:43689186-43689205 | MS.gene94353:intron | 15.0% |
| !!! | AAAGTAGATATTTGAAATTT+TGG | + | chr3.2:43689049-43689068 | MS.gene94353:intron | 15.0% |
| !!! | CTCTTTAATATACATTTTTT+TGG | - | chr3.2:43690298-43690317 | None:intergenic | 15.0% |
| !! | CAAAAAAAATACTATCTTTC+AGG | - | chr3.2:43690028-43690047 | None:intergenic | 20.0% |
| !! | TAGTCCCTATATAAAATATT+AGG | - | chr3.2:43690272-43690291 | None:intergenic | 20.0% |
| !!! | GATAGTATTTTTTTTGCTTA+TGG | + | chr3.2:43690032-43690051 | MS.gene94353:intron | 20.0% |
| !!! | TATGTTCTTCTTTTAATTAC+AGG | + | chr3.2:43689655-43689674 | MS.gene94353:intron | 20.0% |
| ! | AACACTTAATCATAGAGAAT+AGG | - | chr3.2:43688542-43688561 | None:intergenic | 25.0% |
| ! | AATAAGACTGTTGAAAGATT+GGG | - | chr3.2:43689436-43689455 | None:intergenic | 25.0% |
| ! | AATTTACAGAATTTACATCC+TGG | + | chr3.2:43689162-43689181 | MS.gene94353:intron | 25.0% |
| ! | ACCAAAGAAAAAAATCAGAA+GGG | - | chr3.2:43690753-43690772 | None:intergenic | 25.0% |
| ! | AGTACAAGAAAAAGAAAGAA+GGG | + | chr3.2:43688866-43688885 | MS.gene94353:CDS | 25.0% |
| ! | ATCATAAATTGCTTTCTTCA+AGG | - | chr3.2:43688981-43689000 | None:intergenic | 25.0% |
| ! | ATTGATTACCTCAAAATCAT+TGG | - | chr3.2:43689025-43689044 | None:intergenic | 25.0% |
| ! | CTTAAACCTAAAATAAACCA+TGG | - | chr3.2:43687809-43687828 | None:intergenic | 25.0% |
| ! | GAAATAAGGTTAAGTTACAA+AGG | - | chr3.2:43688122-43688141 | None:intergenic | 25.0% |
| ! | TAAAATAAACCATGGTACAA+GGG | - | chr3.2:43687801-43687820 | None:intergenic | 25.0% |
| ! | TAAAGGGACTAATTCAATAT+GGG | - | chr3.2:43690102-43690121 | None:intergenic | 25.0% |
| ! | TACCAAAGAAAAAAATCAGA+AGG | - | chr3.2:43690754-43690773 | None:intergenic | 25.0% |
| ! | TAGTACAAGAAAAAGAAAGA+AGG | + | chr3.2:43688865-43688884 | MS.gene94353:CDS | 25.0% |
| ! | TCTATATTGAACATAGATTC+AGG | + | chr3.2:43690916-43690935 | MS.gene94353:CDS | 25.0% |
| ! | TTAAAGGGACTAATTCAATA+TGG | - | chr3.2:43690103-43690122 | None:intergenic | 25.0% |
| ! | TTATCTTGGACAATGAAATT+AGG | - | chr3.2:43687972-43687991 | None:intergenic | 25.0% |
| ! | TTCATGTCAATAAACAACTT+GGG | + | chr3.2:43690856-43690875 | MS.gene94353:CDS | 25.0% |
| ! | TTCTTTGGTAAAAAAAATGC+AGG | + | chr3.2:43690764-43690783 | MS.gene94353:intron | 25.0% |
| ! | TTGATCTAACAACTGAAATA+AGG | - | chr3.2:43688136-43688155 | None:intergenic | 25.0% |
| ! | TTTCATGTCAATAAACAACT+TGG | + | chr3.2:43690855-43690874 | MS.gene94353:CDS | 25.0% |
| !! | AATATTTTTCCTAGACACAA+CGG | - | chr3.2:43689724-43689743 | None:intergenic | 25.0% |
| !! | ATATTCTCTGTTTTATGTTG+TGG | + | chr3.2:43689366-43689385 | MS.gene94353:intron | 25.0% |
| !! | TCTAGGAAAAATATTGCTTT+TGG | + | chr3.2:43689729-43689748 | MS.gene94353:CDS | 25.0% |
| !!! | CATTACTTTTTATTAGAACC+AGG | - | chr3.2:43689183-43689202 | None:intergenic | 25.0% |
| AAATTGCTTTCTTCAAGGAA+TGG | - | chr3.2:43688976-43688995 | None:intergenic | 30.0% | |
| AACATGAAAATCAGCATGAA+TGG | + | chr3.2:43689894-43689913 | MS.gene94353:intron | 30.0% | |
| AATAATGTTCCTTCAATTCC+TGG | - | chr3.2:43690829-43690848 | None:intergenic | 30.0% | |
| AATTCTCATGTAAGCAACTA+AGG | + | chr3.2:43689585-43689604 | MS.gene94353:intron | 30.0% | |
| AATTTGCAGAAGATTCAAGA+AGG | - | chr3.2:43689700-43689719 | None:intergenic | 30.0% | |
| AGAAATACATCCATCATAGA+AGG | - | chr3.2:43688171-43688190 | None:intergenic | 30.0% | |
| AGTTGAGGATTATATTGCAA+AGG | + | chr3.2:43688775-43688794 | MS.gene94353:CDS | 30.0% | |
| ATAGTTGTCCAGATAAGATT+AGG | - | chr3.2:43690801-43690820 | None:intergenic | 30.0% | |
| ATCAATCCAAATAAACTCCA+AGG | - | chr3.2:43690516-43690535 | None:intergenic | 30.0% | |
| ATCAGAAACAGAAAAGCAAT+TGG | - | chr3.2:43690997-43691016 | None:intergenic | 30.0% | |
| ATTTACTTTATCACTGCACT+TGG | + | chr3.2:43690333-43690352 | MS.gene94353:intron | 30.0% | |
| CAACAAAAGCTATGGAAAAT+AGG | - | chr3.2:43690449-43690468 | None:intergenic | 30.0% | |
| CAAGGATGTAACACAAAAAA+TGG | - | chr3.2:43690498-43690517 | None:intergenic | 30.0% | |
| CAATATGCAACAGTTTATCT+TGG | - | chr3.2:43687986-43688005 | None:intergenic | 30.0% | |
| CACATACAATGCAAAGAAAT+TGG | - | chr3.2:43688205-43688224 | None:intergenic | 30.0% | |
| CATGATAATAACTGTATGCA+AGG | - | chr3.2:43688716-43688735 | None:intergenic | 30.0% | |
| CTAAAATAAACCATGGTACA+AGG | - | chr3.2:43687802-43687821 | None:intergenic | 30.0% | |
| CTATCTTTCAGGGATTAAAA+AGG | - | chr3.2:43690017-43690036 | None:intergenic | 30.0% | |
| GAATAAGACTGTTGAAAGAT+TGG | - | chr3.2:43689437-43689456 | None:intergenic | 30.0% | |
| TAAAACTTCGCTATTTACAG+AGG | - | chr3.2:43688756-43688775 | None:intergenic | 30.0% | |
| TACAAGAACTAATTCAGCAT+AGG | + | chr3.2:43690173-43690192 | MS.gene94353:intron | 30.0% | |
| TATGAAATGTTCTCTCAACA+AGG | - | chr3.2:43689103-43689122 | None:intergenic | 30.0% | |
| TCAAATTAGTCAATCCAAAC+AGG | - | chr3.2:43688299-43688318 | None:intergenic | 30.0% | |
| TGATTAAGTGTTTGCTTTGT+TGG | + | chr3.2:43688550-43688569 | MS.gene94353:intron | 30.0% | |
| TTACATCCTTGGAGTTTATT+TGG | + | chr3.2:43690507-43690526 | MS.gene94353:intron | 30.0% | |
| TTGAAGACCAAGATAATGAT+TGG | - | chr3.2:43688601-43688620 | None:intergenic | 30.0% | |
| TTTATCAAGCACATCTCAAT+AGG | + | chr3.2:43690363-43690382 | MS.gene94353:intron | 30.0% | |
| ! | AATGAGTTGAAAACAGCTTA+TGG | - | chr3.2:43688390-43688409 | None:intergenic | 30.0% |
| ! | ATCATTATCTTGGTCTTCAA+TGG | + | chr3.2:43688601-43688620 | MS.gene94353:CDS | 30.0% |
| ! | ATTATCATGCTTTTCTGTGA+AGG | + | chr3.2:43688727-43688746 | MS.gene94353:CDS | 30.0% |
| ! | TCTTTTGACAATCTTCTGTT+AGG | + | chr3.2:43690940-43690959 | MS.gene94353:CDS | 30.0% |
| ! | TTCTAAGAGTCATATGCTTT+AGG | - | chr3.2:43689564-43689583 | None:intergenic | 30.0% |
| ! | TTTGCAGAGTTCTCTTTTTA+AGG | + | chr3.2:43688267-43688286 | MS.gene94353:intron | 30.0% |
| !! | AGTCTTATTCTACTACGAAA+CGG | + | chr3.2:43689447-43689466 | MS.gene94353:CDS | 30.0% |
| !! | CTAAGGATTGTTTTATTGGT+TGG | + | chr3.2:43689602-43689621 | MS.gene94353:intron | 30.0% |
| !! | CTTGTACCATGGTTTATTTT+AGG | + | chr3.2:43687800-43687819 | MS.gene94353:CDS | 30.0% |
| !! | GCAACTAAGGATTGTTTTAT+TGG | + | chr3.2:43689598-43689617 | MS.gene94353:intron | 30.0% |
| !!! | AAATAGCGAAGTTTTAGTTG+AGG | + | chr3.2:43688760-43688779 | MS.gene94353:CDS | 30.0% |
| !!! | AGCTGTTTTTGTAAGCTATT+CGG | - | chr3.2:43688426-43688445 | None:intergenic | 30.0% |
| !!! | ATTCATGCTGATTTTCATGT+TGG | - | chr3.2:43689895-43689914 | None:intergenic | 30.0% |
| !!! | CATTTTTTGTGTTACATCCT+TGG | + | chr3.2:43690496-43690515 | MS.gene94353:intron | 30.0% |
| AACAACTTGGGAACAACAAT+AGG | + | chr3.2:43690868-43690887 | MS.gene94353:CDS | 35.0% | |
| AAGACCAAGATAATGATTGG+AGG | - | chr3.2:43688598-43688617 | None:intergenic | 35.0% | |
| AATAGGCATTATTAGCGTAG+AGG | + | chr3.2:43690380-43690399 | MS.gene94353:intron | 35.0% | |
| ACAACTTGGGAACAACAATA+GGG | + | chr3.2:43690869-43690888 | MS.gene94353:CDS | 35.0% | |
| AGCATAGGCCAAATATTACA+CGG | + | chr3.2:43690188-43690207 | MS.gene94353:intron | 35.0% | |
| ATAGGCATTATTAGCGTAGA+GGG | + | chr3.2:43690381-43690400 | MS.gene94353:intron | 35.0% | |
| ATCCGCTTACTTCCTTTAAT+CGG | - | chr3.2:43687749-43687768 | None:intergenic | 35.0% | |
| ATGCCTTTCCTAATCTTATC+TGG | + | chr3.2:43690790-43690809 | MS.gene94353:CDS | 35.0% | |
| CATTTGTCAACCTTCTATGA+TGG | + | chr3.2:43688158-43688177 | MS.gene94353:intron | 35.0% | |
| CTTCCAATCTCTCAATACAA+TGG | + | chr3.2:43688031-43688050 | MS.gene94353:intron | 35.0% | |
| GATTCAAGCAACAAAAGCTA+TGG | - | chr3.2:43690457-43690476 | None:intergenic | 35.0% | |
| GCAAAGGATTTGCATACAAA+TGG | + | chr3.2:43688791-43688810 | MS.gene94353:CDS | 35.0% | |
| GGTTTAGTCCGTGTAATATT+TGG | - | chr3.2:43690199-43690218 | None:intergenic | 35.0% | |
| GTCACAAAATTAAAGCGATC+TGG | - | chr3.2:43688087-43688106 | None:intergenic | 35.0% | |
| TACCAGCAAATCAAAGATTC+TGG | + | chr3.2:43688919-43688938 | MS.gene94353:CDS | 35.0% | |
| TCATAGAGAATAGGCATGTT+TGG | - | chr3.2:43688533-43688552 | None:intergenic | 35.0% | |
| TGTCCAGATAAGATTAGGAA+AGG | - | chr3.2:43690796-43690815 | None:intergenic | 35.0% | |
| TTCTTGACTGTGCAAAACTT+AGG | + | chr3.2:43687866-43687885 | MS.gene94353:CDS | 35.0% | |
| TTGCATACAAATGGTAGTAG+TGG | + | chr3.2:43688800-43688819 | MS.gene94353:CDS | 35.0% | |
| TTGGAAGCTTATCTATATGC+AGG | - | chr3.2:43688018-43688037 | None:intergenic | 35.0% | |
| ! | ACAACAATAGGGTCTTTTGT+AGG | + | chr3.2:43690880-43690899 | MS.gene94353:CDS | 35.0% |
| ! | TAACAGTTTTCATTCCTCAC+TGG | + | chr3.2:43689979-43689998 | MS.gene94353:intron | 35.0% |
| ! | TAGGTTTAAGTTCAACCTTG+AGG | + | chr3.2:43687819-43687838 | MS.gene94353:CDS | 35.0% |
| ! | TGAATTAGCTTCATTCTGTG+AGG | - | chr3.2:43689320-43689339 | None:intergenic | 35.0% |
| ! | TTAGACAGCCAATGATTTTG+AGG | + | chr3.2:43689014-43689033 | MS.gene94353:CDS | 35.0% |
| ! | TTCTCTGTTTTATGTTGTGG+AGG | + | chr3.2:43689369-43689388 | MS.gene94353:intron | 35.0% |
| ! | TTTTTGCTTAAGCATGTGCA+TGG | + | chr3.2:43689848-43689867 | MS.gene94353:intron | 35.0% |
| !!! | GCCCTTCTGATTTTTTTCTT+TGG | + | chr3.2:43690749-43690768 | MS.gene94353:intron | 35.0% |
| !!! | GCTGTTTTTGTAAGCTATTC+GGG | - | chr3.2:43688425-43688444 | None:intergenic | 35.0% |
| !!! | TAGTTTGTTCCTCGTTGTTT+TGG | - | chr3.2:43690220-43690239 | None:intergenic | 35.0% |
| AAAGATTGGGAACAGTGATG+TGG | - | chr3.2:43689423-43689442 | None:intergenic | 40.0% | |
| AAGATTGGGAACAGTGATGT+GGG | - | chr3.2:43689422-43689441 | None:intergenic | 40.0% | |
| AATGTTCCTTCAATTCCTGG+AGG | - | chr3.2:43690826-43690845 | None:intergenic | 40.0% | |
| ATCAACAACAACATCTGCCA+TGG | - | chr3.2:43687897-43687916 | None:intergenic | 40.0% | |
| CAACCTTGAGGAATTCAACA+TGG | + | chr3.2:43687831-43687850 | MS.gene94353:CDS | 40.0% | |
| CTGATACCAAAAGAAGCAAC+AGG | + | chr3.2:43691012-43691031 | MS.gene94353:CDS | 40.0% | |
| CTTATTCTACTACGAAACGG+AGG | + | chr3.2:43689450-43689469 | MS.gene94353:CDS | 40.0% | |
| CTTGTCATATCTTACAGCCT+CGG | - | chr3.2:43687930-43687949 | None:intergenic | 40.0% | |
| GAGACCTCCAATCATTATCT+TGG | + | chr3.2:43688591-43688610 | MS.gene94353:CDS | 40.0% | |
| GCAAGGAAAAACCAAGACAT+AGG | - | chr3.2:43689400-43689419 | None:intergenic | 40.0% | |
| GGACAAAATTTAAGCCAGTG+AGG | - | chr3.2:43689996-43690015 | None:intergenic | 40.0% | |
| GGTCCATTGTATTGAGAGAT+TGG | - | chr3.2:43688037-43688056 | None:intergenic | 40.0% | |
| TAGTCAATCCAAACAGGAAC+AGG | - | chr3.2:43688293-43688312 | None:intergenic | 40.0% | |
| TCAATACAATGGACCAGTGA+AGG | + | chr3.2:43688042-43688061 | MS.gene94353:intron | 40.0% | |
| TCCCGATTAAAGGAAGTAAG+CGG | + | chr3.2:43687744-43687763 | MS.gene94353:CDS | 40.0% | |
| TCCGCTTACTTCCTTTAATC+GGG | - | chr3.2:43687748-43687767 | None:intergenic | 40.0% | |
| TCTGACTGTATCCCGATTAA+AGG | + | chr3.2:43687734-43687753 | MS.gene94353:CDS | 40.0% | |
| ! | AAGTAAGCGGATTTCGTACT+TGG | + | chr3.2:43687757-43687776 | MS.gene94353:CDS | 40.0% |
| ! | AAGTGTTTGCTTTGTTGGTC+AGG | + | chr3.2:43688555-43688574 | MS.gene94353:intron | 40.0% |
| ! | AGTGTTTGCTTTGTTGGTCA+GGG | + | chr3.2:43688556-43688575 | MS.gene94353:intron | 40.0% |
| ! | GAGTCATATGCTTTAGGTGA+CGG | - | chr3.2:43689558-43689577 | None:intergenic | 40.0% |
| ! | TAGGTGACGGTTATAAACGA+AGG | - | chr3.2:43689545-43689564 | None:intergenic | 40.0% |
| !! | AATATGCGGGAGTTTGTTAG+GGG | + | chr3.2:43688634-43688653 | MS.gene94353:CDS | 40.0% |
| !! | CTCCAGAATCTTTGATTTGC+TGG | - | chr3.2:43688924-43688943 | None:intergenic | 40.0% |
| !! | GAATATGCGGGAGTTTGTTA+GGG | + | chr3.2:43688633-43688652 | MS.gene94353:CDS | 40.0% |
| !! | TGCTTTTGGTGTACCAGATA+GGG | + | chr3.2:43689743-43689762 | MS.gene94353:CDS | 40.0% |
| !! | TTGCTTTTGGTGTACCAGAT+AGG | + | chr3.2:43689742-43689761 | MS.gene94353:CDS | 40.0% |
| !!! | TTTTAAGGCCTGTTCCTGTT+TGG | + | chr3.2:43688282-43688301 | MS.gene94353:intron | 40.0% |
| AAGACTCCTTGGCAACAAAG+TGG | + | chr3.2:43688948-43688967 | MS.gene94353:CDS | 45.0% | |
| AAGCTATTCGGGAGAGCTTA+TGG | - | chr3.2:43688414-43688433 | None:intergenic | 45.0% | |
| ATGGAACCACTTTGTTGCCA+AGG | - | chr3.2:43688957-43688976 | None:intergenic | 45.0% | |
| CACACACACACACTCTAATG+AGG | - | chr3.2:43689258-43689277 | None:intergenic | 45.0% | |
| CACACACTCTAATGAGGAGT+AGG | - | chr3.2:43689252-43689271 | None:intergenic | 45.0% | |
| CATAAGCTCTTCGCTCTTCA+GGG | + | chr3.2:43690636-43690655 | MS.gene94353:intron | 45.0% | |
| CGGACTAAACCAAAACAACG+AGG | + | chr3.2:43690208-43690227 | MS.gene94353:intron | 45.0% | |
| CTATGTCCTCCAGGAATTGA+AGG | + | chr3.2:43690817-43690836 | MS.gene94353:CDS | 45.0% | |
| GAATTCAACATGGCACCTGA+TGG | + | chr3.2:43687841-43687860 | MS.gene94353:CDS | 45.0% | |
| GATAGGGTTATGGTGCTCTT+TGG | + | chr3.2:43689759-43689778 | MS.gene94353:CDS | 45.0% | |
| GATTCCATGAAGTGCATGCA+TGG | - | chr3.2:43688247-43688266 | None:intergenic | 45.0% | |
| GCAAAACTTAGGATCAGCCA+TGG | + | chr3.2:43687877-43687896 | MS.gene94353:CDS | 45.0% | |
| GCACAGTCAAGAATACCATC+AGG | - | chr3.2:43687859-43687878 | None:intergenic | 45.0% | |
| GCTTAAGCATGTGCATGGTA+TGG | + | chr3.2:43689853-43689872 | MS.gene94353:intron | 45.0% | |
| GTGCCATGTTGAATTCCTCA+AGG | - | chr3.2:43687837-43687856 | None:intergenic | 45.0% | |
| TCATAAGCTCTTCGCTCTTC+AGG | + | chr3.2:43690635-43690654 | MS.gene94353:intron | 45.0% | |
| TCTGGAGAAAGAAGACTCCT+TGG | + | chr3.2:43688937-43688956 | MS.gene94353:CDS | 45.0% | |
| TGAACCATGCATGCACTTCA+TGG | + | chr3.2:43688240-43688259 | MS.gene94353:intron | 45.0% | |
| TGCAAATTGCCGTTGTGTCT+AGG | + | chr3.2:43689712-43689731 | MS.gene94353:CDS | 45.0% | |
| TGGTGTACCAGATAGGGTTA+TGG | + | chr3.2:43689749-43689768 | MS.gene94353:CDS | 45.0% | |
| TGTTGATGCAATGATAGCCG+AGG | + | chr3.2:43687910-43687929 | MS.gene94353:CDS | 45.0% | |
| TTGGAGGTCTCCTGCAAATT+TGG | - | chr3.2:43688582-43688601 | None:intergenic | 45.0% | |
| ! | ATAGGGTCTTTTGTAGGTGC+TGG | + | chr3.2:43690886-43690905 | MS.gene94353:CDS | 45.0% |
| ! | ATCTTGGTCTTCAATGGCTG+TGG | + | chr3.2:43688607-43688626 | MS.gene94353:CDS | 45.0% |
| ! | GGAATATGCGGGAGTTTGTT+AGG | + | chr3.2:43688632-43688651 | MS.gene94353:CDS | 45.0% |
| ! | GGTTGGTTAGGACTTATGCT+CGG | + | chr3.2:43689517-43689536 | MS.gene94353:CDS | 45.0% |
| ! | TCTTGGTCTTCAATGGCTGT+GGG | + | chr3.2:43688608-43688627 | MS.gene94353:CDS | 45.0% |
| !! | AAAGCTCGAAGCATCGTTCT+TGG | + | chr3.2:43689477-43689496 | MS.gene94353:CDS | 45.0% |
| !! | AAGAGCACCATAACCCTATC+TGG | - | chr3.2:43689759-43689778 | None:intergenic | 45.0% |
| !! | AAGCTCGAAGCATCGTTCTT+GGG | + | chr3.2:43689478-43689497 | MS.gene94353:CDS | 45.0% |
| !! | ATATGCGGGAGTTTGTTAGG+GGG | + | chr3.2:43688635-43688654 | MS.gene94353:CDS | 45.0% |
| !! | GATGCACCTGTTGCTTCTTT+TGG | - | chr3.2:43691021-43691040 | None:intergenic | 45.0% |
| !!! | ATATATCAATTTTATTTTAA+AGG | - | chr3.2:43690119-43690138 | None:intergenic | 5.0% |
| !!! | TAAAATTGATATATATTTTA+TGG | + | chr3.2:43690125-43690144 | MS.gene94353:intron | 5.0% |
| !!! | TATATCAATTTTATTTTAAA+GGG | - | chr3.2:43690118-43690137 | None:intergenic | 5.0% |
| AATGGACCAGTGAAGGTCGA+AGG | + | chr3.2:43688049-43688068 | MS.gene94353:intron | 50.0% | |
| ACAATCCCTTCGACCTTCAC+TGG | - | chr3.2:43688058-43688077 | None:intergenic | 50.0% | |
| ATGGACCAGTGAAGGTCGAA+GGG | + | chr3.2:43688050-43688069 | MS.gene94353:intron | 50.0% | |
| ATGGCTGTGGGAGGAATATG+CGG | + | chr3.2:43688620-43688639 | MS.gene94353:CDS | 50.0% | |
| CAGGTATGCTCATGTTGCGT+TGG | + | chr3.2:43689674-43689693 | MS.gene94353:intron | 50.0% | |
| TCTGGACAACTATGTCCTCC+AGG | + | chr3.2:43690808-43690827 | MS.gene94353:CDS | 50.0% | |
| TGGAGGACAGACCTATGTCT+TGG | + | chr3.2:43689386-43689405 | MS.gene94353:intron | 50.0% | |
| TTGGTCAGGGCCAAATTTGC+AGG | + | chr3.2:43688569-43688588 | MS.gene94353:intron | 50.0% | |
| ! | GTACGCGTTGTTGGTTGGTT+AGG | + | chr3.2:43689505-43689524 | MS.gene94353:CDS | 50.0% |
| ! | TTTGGCTCAGCGCTTGTTGA+TGG | + | chr3.2:43689777-43689796 | MS.gene94353:CDS | 50.0% |
| !! | AGCTCGAAGCATCGTTCTTG+GGG | + | chr3.2:43689479-43689498 | MS.gene94353:CDS | 50.0% |
| !!! | GTCTTTTGTAGGTGCTGGCT+TGG | + | chr3.2:43690891-43690910 | MS.gene94353:CDS | 50.0% |
| CTGTGCTCTCCCTTGTACCA+TGG | + | chr3.2:43687789-43687808 | MS.gene94353:CDS | 55.0% | |
| GGACAGTACGCGTTGTTGGT+TGG | + | chr3.2:43689500-43689519 | MS.gene94353:CDS | 55.0% | |
| TGGCTGTGGGAGGAATATGC+GGG | + | chr3.2:43688621-43688640 | MS.gene94353:CDS | 55.0% | |
| TGGGAACAGTGATGTGGGCA+AGG | - | chr3.2:43689417-43689436 | None:intergenic | 55.0% | |
| TGGTCTTCAATGGCTGTGGG+AGG | + | chr3.2:43688611-43688630 | MS.gene94353:CDS | 55.0% | |
| TTGGGGACAGTACGCGTTGT+TGG | + | chr3.2:43689496-43689515 | MS.gene94353:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 43687716 | 43691047 | 43687716 | ID=MS.gene94353 |
| chr3.2 | mRNA | 43687716 | 43691047 | 43687716 | ID=MS.gene94353.t1;Parent=MS.gene94353 |
| chr3.2 | exon | 43687716 | 43687948 | 43687716 | ID=MS.gene94353.t1.exon1;Parent=MS.gene94353.t1 |
| chr3.2 | CDS | 43687716 | 43687948 | 43687716 | ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1 |
| chr3.2 | exon | 43688577 | 43689035 | 43688577 | ID=MS.gene94353.t1.exon2;Parent=MS.gene94353.t1 |
| chr3.2 | CDS | 43688577 | 43689035 | 43688577 | ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1 |
| chr3.2 | exon | 43689396 | 43689593 | 43689396 | ID=MS.gene94353.t1.exon3;Parent=MS.gene94353.t1 |
| chr3.2 | CDS | 43689396 | 43689593 | 43689396 | ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1 |
| chr3.2 | exon | 43689677 | 43689814 | 43689677 | ID=MS.gene94353.t1.exon4;Parent=MS.gene94353.t1 |
| chr3.2 | CDS | 43689677 | 43689814 | 43689677 | ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1 |
| chr3.2 | exon | 43690786 | 43691047 | 43690786 | ID=MS.gene94353.t1.exon5;Parent=MS.gene94353.t1 |
| chr3.2 | CDS | 43690786 | 43691047 | 43690786 | ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1 |
| Gene Sequence |
| Protein sequence |
