AlfalfaGEDB | MS.gene94353

M. sativa cultivar XinJiangDaYe / MS.gene94353

KEGG: -
GO: GO:0005575 GO:0016021 GO:0031224 GO:0110165
PFAM: PF03092.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94353.t1	XP_003600052.1	96.7	425	14	0	5	429	71	495	5.60E-214	753.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94353.t1	Q8RWQ5	64.9	425	144	2	5	429	71	490	7.8e-140	498.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94353.t1	G7IXK2	96.7	425	14	0	5	429	71	495	4.0e-214	753.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene94353	0.801956	7.05E-49	-1.69E-46
MS.gene051744	MS.gene94353	0.803645	3.16E-49	-1.69E-46
MS.gene057034	MS.gene94353	0.802428	5.64E-49	-1.69E-46
MS.gene057102	MS.gene94353	0.80748	4.95E-50	-1.69E-46
MS.gene05985	MS.gene94353	-0.813318	2.72E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene016060	MS.gene94353	PPI
MS.gene33133	MS.gene94353	PPI
MS.gene94353	MS.gene016058	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94353.t1	MTR_3g051190	98.353	425	7	0	5	429	71	495	0.0	844
MS.gene94353.t1	MTR_2g031810	27.094	406	223	6	25	422	9	349	1.68e-39	145
MS.gene94353.t1	MTR_2g031790	36.190	210	134	0	213	422	117	326	1.76e-38	142
MS.gene94353.t1	MTR_3g008470	28.297	417	241	6	5	421	156	514	1.66e-37	144
MS.gene94353.t1	MTR_1g014250	26.133	375	209	6	52	422	29	339	4.50e-30	120
MS.gene94353.t1	MTR_1g014250	33.333	198	127	2	229	422	266	462	6.54e-28	115
MS.gene94353.t1	MTR_1g103530	27.500	320	174	6	7	326	4	265	4.75e-19	89.4
MS.gene94353.t1	MTR_1g103530	27.011	348	190	7	6	353	168	451	3.76e-18	87.4
MS.gene94353.t1	MTR_2g031770	29.371	143	92	2	5	139	78	219	6.56e-16	77.4
MS.gene94353.t1	MTR_1g103540	44.318	88	41	2	328	410	1	85	4.31e-14	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94353.t1	AT5G54860	63.765	425	149	2	5	429	71	490	0.0	547
MS.gene94353.t1	AT2G33280	28.132	423	244	4	5	426	31	394	3.01e-37	141
MS.gene94353.t1	AT2G32040	29.383	405	227	6	6	410	51	396	4.91e-37	140
MS.gene94353.t1	AT2G32040	29.136	405	228	6	6	410	182	527	2.83e-36	140
MS.gene94353.t1	AT1G04570	33.962	212	140	0	210	421	137	348	1.13e-34	133
MS.gene94353.t1	AT1G64890	34.906	212	138	0	213	424	221	432	6.72e-34	132
MS.gene94353.t1	AT1G04570	33.962	212	140	0	210	421	285	496	2.03e-33	132
MS.gene94353.t1	AT5G10820	25.000	420	250	6	5	421	114	471	6.15e-32	127
MS.gene94353.t1	AT1G79710	24.471	425	245	7	5	422	106	461	7.46e-32	127
MS.gene94353.t1	AT1G79710	24.471	425	245	7	5	422	106	461	7.46e-32	127

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Find 88 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGGGAACAGTGATG+TGG	0.621664	3.2:-43689420	None:intergenic
AAAGCTCGAAGCATCGTTCT+TGG	0.380680	3.2:+43689477	MS.gene94353:CDS
AAATTGCTTTCTTCAAGGAA+TGG	0.479777	3.2:-43688973	None:intergenic
AACAACTTGGGAACAACAAT+AGG	0.355575	3.2:+43690868	MS.gene94353:CDS
AAGACCAAGATAATGATTGG+AGG	0.620304	3.2:-43688595	None:intergenic
AAGACTCCTTGGCAACAAAG+TGG	0.652046	3.2:+43688948	MS.gene94353:CDS
AAGAGCACCATAACCCTATC+TGG	0.416214	3.2:-43689756	None:intergenic
AAGATTGGGAACAGTGATGT+GGG	0.654347	3.2:-43689419	None:intergenic
AAGCTCGAAGCATCGTTCTT+GGG	0.399090	3.2:+43689478	MS.gene94353:CDS
AAGTAAGCGGATTTCGTACT+TGG	0.393076	3.2:+43687757	MS.gene94353:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGCTTTCTTCAAGGAA+TGG	-	chr3.2:43688976-43688995	None:intergenic	30.0%
AACATGAAAATCAGCATGAA+TGG	+	chr3.2:43689894-43689913	MS.gene94353:intron	30.0%
AATAATGTTCCTTCAATTCC+TGG	-	chr3.2:43690829-43690848	None:intergenic	30.0%
AATTCTCATGTAAGCAACTA+AGG	+	chr3.2:43689585-43689604	MS.gene94353:intron	30.0%
AATTTGCAGAAGATTCAAGA+AGG	-	chr3.2:43689700-43689719	None:intergenic	30.0%
AGAAATACATCCATCATAGA+AGG	-	chr3.2:43688171-43688190	None:intergenic	30.0%
AGTTGAGGATTATATTGCAA+AGG	+	chr3.2:43688775-43688794	MS.gene94353:CDS	30.0%
ATAGTTGTCCAGATAAGATT+AGG	-	chr3.2:43690801-43690820	None:intergenic	30.0%
ATCAATCCAAATAAACTCCA+AGG	-	chr3.2:43690516-43690535	None:intergenic	30.0%
ATCAGAAACAGAAAAGCAAT+TGG	-	chr3.2:43690997-43691016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	43687716	43691047	43687716	ID=MS.gene94353
chr3.2	mRNA	43687716	43691047	43687716	ID=MS.gene94353.t1;Parent=MS.gene94353
chr3.2	exon	43687716	43687948	43687716	ID=MS.gene94353.t1.exon1;Parent=MS.gene94353.t1
chr3.2	CDS	43687716	43687948	43687716	ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1
chr3.2	exon	43688577	43689035	43688577	ID=MS.gene94353.t1.exon2;Parent=MS.gene94353.t1
chr3.2	CDS	43688577	43689035	43688577	ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1
chr3.2	exon	43689396	43689593	43689396	ID=MS.gene94353.t1.exon3;Parent=MS.gene94353.t1
chr3.2	CDS	43689396	43689593	43689396	ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1
chr3.2	exon	43689677	43689814	43689677	ID=MS.gene94353.t1.exon4;Parent=MS.gene94353.t1
chr3.2	CDS	43689677	43689814	43689677	ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1
chr3.2	exon	43690786	43691047	43690786	ID=MS.gene94353.t1.exon5;Parent=MS.gene94353.t1
chr3.2	CDS	43690786	43691047	43690786	ID=cds.MS.gene94353.t1;Parent=MS.gene94353.t1

Gene Sequence

>MS.gene94353

ATGATGAACAGGATACTTTCTGACTGTATCCCGATTAAAGGAAGTAAGCGGATTTCGTACTTGGTCATTGCGACTGTGCTCTCCCTTGTACCATGGTTTATTTTAGGTTTAAGTTCAACCTTGAGGAATTCAACATGGCACCTGATGGTATTCTTGACTGTGCAAAACTTAGGATCAGCCATGGCAGATGTTGTTGTTGATGCAATGATAGCCGAGGCTGTAAGATATGACAAGTATGTTTGCATCTTCAATTCCTAATTTCATTGTCCAAGATAAACTGTTGCATATTGAATAGTATGCCTGCATATAGATAAGCTTCCAATCTCTCAATACAATGGACCAGTGAAGGTCGAAGGGATTGTTTAATACCAGATCGCTTTAATTTTGTGACTTTTGTTGATAACCTTTGTAACTTAACCTTATTTCAGTTGTTAGATCAAAACATTTGTCAACCTTCTATGATGGATGTATTTCTTTGCATGATAACCAATTTCTTTGCATTGTATGTGTGTCTATATATAACGTGAACCATGCATGCACTTCATGGAATCTTTGCAGAGTTCTCTTTTTAAGGCCTGTTCCTGTTTGGATTGACTAATTTGAATTTATCTATTGACATAAGCACTTCTTACACTGTATGAGAGAGCTTATAGAAACAGCTTATGACATGTCCATAAGCTGTTTTCAACTCATTTCCATAAGCTCTCCCGAATAGCTTACAAAAACAGCTTATAGATTATATGAAAACTGTTACTTTATTTTATCTTTTGTTATAGAAATAGCTTATACATAAGCACTTAATTGAGCTGTTTATCCAAACATGCCTATTCTCTATGATTAAGTGTTTGCTTTGTTGGTCAGGGCCAAATTTGCAGGAGACCTCCAATCATTATCTTGGTCTTCAATGGCTGTGGGAGGAATATGCGGGAGTTTGTTAGGGGGAATCGCGTTATCAAGTTTAGAGATAGATGCTATTTTTCTTCTATTTTCTGTACTGCCTTGCATACAGTTATTATCATGCTTTTCTGTGAAGGAGACCTCTGTAAATAGCGAAGTTTTAGTTGAGGATTATATTGCAAAGGATTTGCATACAAATGGTAGTAGTGGTACGCTAGATGAAGATAGTTCTTTTACTAAAAAGTCACACAGTAGTACAAGAAAAAGAAAGAAGGGAAAAAAGAACACAAAAAATAGAGCAGTAAATACCAGCAAATCAAAGATTCTGGAGAAAGAAGACTCCTTGGCAACAAAGTGGTTCCATTCCTTGAAGAAAGCAATTTATGATTTGTGTCGTGCGTTTAGACAGCCAATGATTTTGAGGTAATCAATCATTAAAGTAGATATTTGAAATTTTGGCTGTTTACTTTTAAGATTATGAATGATTCCTTGTTGAGAGAACATTTCATATTTGAGAGTTCCATTCATATATAATTATAGTTTATGGTTAATTTACAGAATTTACATCCTGGTTCTAATAAAAAGTAATGTTTCGGAAACTTACTATATCATACGAGAAGTTTTAAGTTTTCTTTTCCTACTCCTCATTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTTTTTTATTTATGGCCTCACAGAATGAAGCTAATTCATTTTACGTATATTCTATAAATGAGTAATATTCTCTGTTTTATGTTGTGGAGGACAGACCTATGTCTTGGTTTTTCCTTGCCCACATCACTGTTCCCAATCTTTCAACAGTCTTATTCTACTACGAAACGGAGGTTCTAAAGCTCGAAGCATCGTTCTTGGGGACAGTACGCGTTGTTGGTTGGTTAGGACTTATGCTCGGAACCTTCGTTTATAACCGTCACCTAAAGCATATGACTCTTAGAAGAATTCTCATGTAAGCAACTAAGGATTGTTTTATTGGTTGGTAATTAGTTTGTGTCTATTTAATTTACTGATATGTTCTTCTTTTAATTACAGGTATGCTCATGTTGCGTTGGCCTTCTTGAATCTTCTGCAAATTGCCGTTGTGTCTAGGAAAAATATTGCTTTTGGTGTACCAGATAGGGTTATGGTGCTCTTTGGCTCAGCGCTTGTTGATGGAATCAATCAATTCAAGTTTGTCATTTCTTCTAATTTTATTTCATTTTATTTTTGCTTAAGCATGTGCATGGTATGGTAGTTGAAAAATATTTCCAACATGAAAATCAGCATGAATGGCATGAATTTGCAAAGAATGATATCTTCATCTTATGTACATTGTCGTCATAATATTATATATGTAACAGTTTTCATTCCTCACTGGCTTAAATTTTGTCCTTTTTAATCCCTGAAAGATAGTATTTTTTTTGCTTATGGTTCTTGTTTGTTTTGATGCAGTAACAACTAACAACAATTTTTTTCCCATATTGAATTAGTCCCTTTAAAATAAAATTGATATATATTTTATGGACTAACATCAATATAGTACATAGATTACAAGAACTAATTCAGCATAGGCCAAATATTACACGGACTAAACCAAAACAACGAGGAACAAACTATAAATTTTTCTAATTTTTAATGATTATAACCTAATATTTTATATAGGGACTAAAACCAAAAAAATGTATATTAAAGAGACTAATTCTATAATCATTTACTTTATCACTGCACTTGGATTCATCTTTATCAAGCACATCTCAATAGGCATTATTAGCGTAGAGGGACAGAACATACAGTATACATCAGTTAATATTTTATGTTTGTACCTATTTTCCATAGCTTTTGTTGCTTGAATCATAATGATTTGATATGAACCATTTTTTGTGTTACATCCTTGGAGTTTATTTGGATTGATTTATTTGAACTTATCTTCTTGCATAAGCAGTTGCGAGACTGTTTGTGAGAGCTTATGAAAACAGTTTATGACATATTAAAAAGTTGTTTTCAGCTTTTTTCATAAGCTCTTCGCTCTTCAGGGAAAACAAATTATAGATTATATGAAAGCAGTTTGACTCTCTTTTATCTTTTTGTTATTGAAATAGCTTATAAATAAGCATTTATATGATAAGCCCTTCTGATTTTTTTCTTTGGTAAAAAAAATGCAGGTTTATGCCTTTCCTAATCTTATCTGGACAACTATGTCCTCCAGGAATTGAAGGAACATTATTTGCTCTTTTCATGTCAATAAACAACTTGGGAACAACAATAGGGTCTTTTGTAGGTGCTGGCTTGGCTTCTATATTGAACATAGATTCAGGATCTTTTGACAATCTTCTGTTAGGCATTGTTATTCATGCTTTGTGCAATTTCATACCAATTGCTTTTCTGTTTCTGATACCAAAAGAAGCAACAGGTGCATCAGCATAG

Protein sequence

>MS.gene94353.t1

MMNRILSDCIPIKGSKRISYLVIATVLSLVPWFILGLSSTLRNSTWHLMVFLTVQNLGSAMADVVVDAMIAEAVRYDKAKFAGDLQSLSWSSMAVGGICGSLLGGIALSSLEIDAIFLLFSVLPCIQLLSCFSVKETSVNSEVLVEDYIAKDLHTNGSSGTLDEDSSFTKKSHSSTRKRKKGKKNTKNRAVNTSKSKILEKEDSLATKWFHSLKKAIYDLCRAFRQPMILRPMSWFFLAHITVPNLSTVLFYYETEVLKLEASFLGTVRVVGWLGLMLGTFVYNRHLKHMTLRRILMYAHVALAFLNLLQIAVVSRKNIAFGVPDRVMVLFGSALVDGINQFKFMPFLILSGQLCPPGIEGTLFALFMSINNLGTTIGSFVGAGLASILNIDSGSFDNLLLGIVIHALCNFIPIAFLFLIPKEATGASA