Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016060.t1 | KEH39874.1 | 98.2 | 381 | 6 | 1 | 1 | 380 | 1 | 381 | 3.70E-201 | 710.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016060.t1 | Q5FV41 | 65.0 | 380 | 130 | 2 | 1 | 378 | 119 | 497 | 7.9e-136 | 485.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016060.t1 | A0A072VD09 | 98.2 | 381 | 6 | 1 | 1 | 380 | 1 | 381 | 2.7e-201 | 710.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016060 | MS.gene94353 | PPI |
| MS.gene016060 | MS.gene82704 | PPI |
| MS.gene016060 | MS.gene30146 | PPI |
| MS.gene016060 | MS.gene027122 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016060.t1 | MTR_1g014250 | 98.163 | 381 | 6 | 1 | 1 | 380 | 1 | 381 | 0.0 | 751 |
| MS.gene016060.t1 | MTR_1g014250 | 98.153 | 379 | 6 | 1 | 3 | 380 | 126 | 504 | 0.0 | 745 |
| MS.gene016060.t1 | MTR_1g014220 | 42.175 | 377 | 168 | 3 | 1 | 374 | 116 | 445 | 1.63e-94 | 290 |
| MS.gene016060.t1 | MTR_5g007060 | 81.034 | 116 | 7 | 1 | 180 | 295 | 167 | 267 | 7.21e-53 | 176 |
| MS.gene016060.t1 | MTR_3g051190 | 33.673 | 196 | 125 | 2 | 145 | 339 | 297 | 488 | 4.18e-27 | 112 |
| MS.gene016060.t1 | MTR_3g008470 | 26.364 | 330 | 231 | 4 | 22 | 344 | 196 | 520 | 6.27e-20 | 91.7 |
| MS.gene016060.t1 | MTR_2g031810 | 26.567 | 335 | 205 | 9 | 16 | 331 | 29 | 341 | 1.22e-15 | 77.8 |
| MS.gene016060.t1 | MTR_1g103530 | 29.297 | 256 | 167 | 7 | 1 | 247 | 19 | 269 | 7.24e-13 | 70.1 |
| MS.gene016060.t1 | MTR_1g103530 | 29.500 | 200 | 129 | 5 | 56 | 247 | 239 | 434 | 8.60e-13 | 70.1 |
| MS.gene016060.t1 | MTR_1g103540 | 43.284 | 67 | 38 | 0 | 258 | 324 | 19 | 85 | 2.17e-11 | 60.8 |
| MS.gene016060.t1 | MTR_2g031790 | 29.710 | 138 | 97 | 0 | 194 | 331 | 181 | 318 | 9.09e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016060.t1 | AT5G25050 | 65.000 | 380 | 130 | 2 | 1 | 378 | 119 | 497 | 1.22e-180 | 511 |
| MS.gene016060.t1 | AT5G25040 | 58.947 | 380 | 145 | 4 | 1 | 378 | 120 | 490 | 2.45e-158 | 454 |
| MS.gene016060.t1 | AT1G79710 | 56.952 | 374 | 158 | 2 | 1 | 374 | 123 | 493 | 2.13e-154 | 444 |
| MS.gene016060.t1 | AT1G79710 | 56.952 | 374 | 158 | 2 | 1 | 374 | 123 | 493 | 2.13e-154 | 444 |
| MS.gene016060.t1 | AT5G25040 | 55.309 | 405 | 145 | 5 | 1 | 378 | 120 | 515 | 9.70e-153 | 441 |
| MS.gene016060.t1 | AT5G25040 | 60.511 | 352 | 128 | 4 | 29 | 378 | 1 | 343 | 3.54e-152 | 433 |
| MS.gene016060.t1 | AT5G25040 | 60.841 | 309 | 118 | 1 | 1 | 309 | 120 | 425 | 2.27e-132 | 387 |
| MS.gene016060.t1 | AT1G79710 | 57.971 | 276 | 116 | 0 | 1 | 276 | 123 | 398 | 1.65e-114 | 339 |
| MS.gene016060.t1 | AT5G10820 | 48.256 | 344 | 175 | 1 | 1 | 341 | 131 | 474 | 1.74e-113 | 340 |
| MS.gene016060.t1 | AT5G25040 | 58.397 | 262 | 106 | 1 | 1 | 262 | 120 | 378 | 6.35e-107 | 319 |
| MS.gene016060.t1 | AT5G54860 | 25.203 | 369 | 215 | 6 | 29 | 339 | 118 | 483 | 2.35e-28 | 116 |
| MS.gene016060.t1 | AT2G32040 | 31.392 | 309 | 195 | 6 | 56 | 354 | 122 | 423 | 1.19e-26 | 110 |
| MS.gene016060.t1 | AT2G32040 | 31.392 | 309 | 195 | 6 | 56 | 354 | 253 | 554 | 7.33e-26 | 109 |
| MS.gene016060.t1 | AT1G04570 | 30.918 | 207 | 136 | 3 | 138 | 342 | 151 | 352 | 4.24e-21 | 94.4 |
| MS.gene016060.t1 | AT1G04570 | 35.862 | 145 | 93 | 0 | 198 | 342 | 356 | 500 | 1.50e-20 | 93.6 |
| MS.gene016060.t1 | AT2G33280 | 33.793 | 145 | 96 | 0 | 198 | 342 | 175 | 319 | 6.91e-18 | 84.7 |
| MS.gene016060.t1 | AT2G33280 | 33.793 | 145 | 96 | 0 | 198 | 342 | 249 | 393 | 1.26e-17 | 84.3 |
| MS.gene016060.t1 | AT2G33280 | 33.793 | 145 | 96 | 0 | 198 | 342 | 357 | 501 | 2.35e-17 | 84.0 |
Find 77 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTGTGTTGGCAATTT+TGG | 0.063315 | 1.1:+7629068 | MS.gene016060:CDS |
| GGTATAATATTGCTCCTAAA+AGG | 0.175539 | 1.1:-7631257 | None:intergenic |
| TCCAGCTGGACTTATAATTT+TGG | 0.227795 | 1.1:+7629412 | MS.gene016060:CDS |
| TCTTCTATTGGTGCACTATT+AGG | 0.233671 | 1.1:+7629213 | MS.gene016060:CDS |
| TTGATGGTTGCAGGTTTATT+AGG | 0.248071 | 1.1:+7629006 | None:intergenic |
| GAACAAAGTTTGATAATCTT+TGG | 0.261678 | 1.1:+7631607 | MS.gene016060:CDS |
| GGCATCTTTGTTCACCTTAT+AGG | 0.269657 | 1.1:+7629249 | MS.gene016060:CDS |
| CAGTTGCTCTATGGTCTATC+AGG | 0.276942 | 1.1:+7631327 | MS.gene016060:CDS |
| GGAAGAAGAATGAAAGAGTT+AGG | 0.300985 | 1.1:-7631702 | None:intergenic |
| TGTGCCTTTAGTTCTTCTAT+TGG | 0.305955 | 1.1:+7629201 | MS.gene016060:CDS |
| TGTCGCTCATTGATGGTTGC+AGG | 0.306541 | 1.1:+7628997 | None:intergenic |
| TGCCGGCATCCACAAAGTTT+TGG | 0.309039 | 1.1:-7629745 | None:intergenic |
| GGCTAACCATAGGGCCTATA+AGG | 0.323121 | 1.1:-7629263 | None:intergenic |
| AAGATTATCAAACTTTGTTC+TGG | 0.328960 | 1.1:-7631604 | None:intergenic |
| CATTCAGAGACTTACTCTTT+TGG | 0.332958 | 1.1:+7631301 | MS.gene016060:CDS |
| AATCCGGTATACCAAACTTT+AGG | 0.344820 | 1.1:-7631383 | None:intergenic |
| AGCTCAAAGCTTTGTCCATC+TGG | 0.346803 | 1.1:+7631480 | MS.gene016060:CDS |
| CTGGACTTCTTTCATCATCA+TGG | 0.374263 | 1.1:+7631547 | MS.gene016060:CDS |
| GCCTTAACAGCAGGGAGTGC+TGG | 0.387976 | 1.1:+7629090 | MS.gene016060:CDS |
| TGTAGTCCACATAGCCTTGC+CGG | 0.387979 | 1.1:-7629762 | None:intergenic |
| CTTTGTCCATCTGGTATTGA+AGG | 0.389296 | 1.1:+7631489 | MS.gene016060:CDS |
| AGAAACCAAGGATGTTGAAT+TGG | 0.391325 | 1.1:+7631767 | MS.gene016060:CDS |
| ATGAGATTGAACCTAAAGTT+TGG | 0.398436 | 1.1:+7631372 | MS.gene016060:CDS |
| TCCAGCACTCCCTGCTGTTA+AGG | 0.406873 | 1.1:-7629091 | None:intergenic |
| ACCAATAAAACATTCCTTCA+AGG | 0.408629 | 1.1:-7629853 | None:intergenic |
| TGGACTTCTTTCATCATCAT+GGG | 0.415817 | 1.1:+7631548 | MS.gene016060:CDS |
| CTATTAGGATTCTCTATTAG+TGG | 0.425299 | 1.1:+7629228 | MS.gene016060:CDS |
| CTAGGTGCACCAAAACTTTG+TGG | 0.428219 | 1.1:+7629736 | MS.gene016060:intron |
| CGTAATCCTTTAGAGCGTAT+TGG | 0.433360 | 1.1:-7631278 | None:intergenic |
| TTTCTTCCACAGGAAAGTAT+AGG | 0.435044 | 1.1:+7631204 | MS.gene016060:intron |
| CTGAGTTTGAATATCCTTGA+AGG | 0.437719 | 1.1:+7629839 | MS.gene016060:CDS |
| TCAAATACCTGTGAGAAAGA+TGG | 0.438222 | 1.1:-7629896 | None:intergenic |
| TGTTCACCTTATAGGCCCTA+TGG | 0.452835 | 1.1:+7629257 | MS.gene016060:CDS |
| CTTTCATCATCATGGGGTGG+TGG | 0.454756 | 1.1:+7631555 | MS.gene016060:CDS |
| AGACACCAATTCAACATCCT+TGG | 0.456982 | 1.1:-7631772 | None:intergenic |
| ATCACAACAAAGACGTAATC+CGG | 0.462520 | 1.1:-7631399 | None:intergenic |
| CACCAAAACTTTGTGGATGC+CGG | 0.471200 | 1.1:+7629743 | MS.gene016060:CDS |
| GTATAATATTGCTCCTAAAA+GGG | 0.472990 | 1.1:-7631256 | None:intergenic |
| ACCAAAATTATAAGTCCAGC+TGG | 0.476055 | 1.1:-7629413 | None:intergenic |
| GAACCTAAAGTTTGGTATAC+CGG | 0.482350 | 1.1:+7631380 | MS.gene016060:CDS |
| ATTATACCAATACGCTCTAA+AGG | 0.485902 | 1.1:+7631272 | MS.gene016060:CDS |
| CAAATACCTGTGAGAAAGAT+GGG | 0.493656 | 1.1:-7629895 | None:intergenic |
| CATTGAAGAATCAAGATGTA+TGG | 0.496871 | 1.1:+7629783 | MS.gene016060:CDS |
| TCTCTTGTACACAGTGTTGA+TGG | 0.499772 | 1.1:+7631792 | MS.gene016060:CDS |
| CTGTGCAACACATGCATCAA+TGG | 0.501476 | 1.1:-7629133 | None:intergenic |
| TCTTCTTCCAAAAGAAAATG+TGG | 0.503749 | 1.1:+7631716 | MS.gene016060:CDS |
| TGTCAGAAGCAAGGGAAGGA+TGG | 0.513050 | 1.1:-7629167 | None:intergenic |
| AAAAGAAAATGTGGATTCAA+AGG | 0.516295 | 1.1:+7631725 | MS.gene016060:CDS |
| GTCAGAAGCAAGGGAAGGAT+GGG | 0.531751 | 1.1:-7629166 | None:intergenic |
| GGTTTGATGACTATTCCAGC+TGG | 0.533339 | 1.1:+7629398 | MS.gene016060:CDS |
| AAATTGCCAACACAAGATGA+AGG | 0.535053 | 1.1:-7629065 | None:intergenic |
| TGCACCAATAGAAGAACTAA+AGG | 0.537673 | 1.1:-7629205 | None:intergenic |
| AACTTTGCATGTCAGAAGCA+AGG | 0.539901 | 1.1:-7629176 | None:intergenic |
| AAATGACTAGTAGACTAAAG+TGG | 0.544535 | 1.1:+7631439 | MS.gene016060:CDS |
| TGAAAACCTTCATCTTGTGT+TGG | 0.550037 | 1.1:+7629059 | MS.gene016060:CDS |
| CTAATGTCAATTGATAATGC+TGG | 0.554898 | 1.1:+7631528 | MS.gene016060:CDS |
| CTTCTTTCATCATCATGGGG+TGG | 0.567293 | 1.1:+7631552 | MS.gene016060:CDS |
| GGACTTCTTTCATCATCATG+GGG | 0.573124 | 1.1:+7631549 | MS.gene016060:CDS |
| ACAAAACTTCTCTTACAGAC+AGG | 0.574633 | 1.1:+7629463 | MS.gene016060:CDS |
| ACTTTGCATGTCAGAAGCAA+GGG | 0.576270 | 1.1:-7629175 | None:intergenic |
| AAACTTTGTGGATGCCGGCA+AGG | 0.577788 | 1.1:+7629748 | MS.gene016060:CDS |
| GATATTCAAACTCAGTGCAA+AGG | 0.582025 | 1.1:-7629831 | None:intergenic |
| TTATTGGTATACAGACTCAA+AGG | 0.588010 | 1.1:+7629868 | MS.gene016060:CDS |
| ATGGAAAGATAACAAAAGCA+TGG | 0.598685 | 1.1:-7629037 | None:intergenic |
| AACAGCAGGGAGTGCTGGAG+TGG | 0.601674 | 1.1:+7629095 | MS.gene016060:CDS |
| GGATGGCCCATCTTTCTCAC+AGG | 0.602106 | 1.1:+7629889 | MS.gene016060:CDS |
| AATGTTCCTTCAATACCAGA+TGG | 0.602463 | 1.1:-7631495 | None:intergenic |
| AAAGAGTTAGGATCAACTCT+AGG | 0.610731 | 1.1:-7631690 | None:intergenic |
| TGGTATACAGACTCAAAGGA+TGG | 0.620432 | 1.1:+7629872 | MS.gene016060:CDS |
| AGAAAATGTGGATTCAAAGG+TGG | 0.627950 | 1.1:+7631728 | MS.gene016060:CDS |
| TTTGAGCTGAGTACAAGCAT+AGG | 0.628993 | 1.1:-7631465 | None:intergenic |
| AGTTGCTCTATGGTCTATCA+GGG | 0.638082 | 1.1:+7631328 | MS.gene016060:CDS |
| TATTGACACTTCAGAAACCA+AGG | 0.638956 | 1.1:+7631755 | MS.gene016060:CDS |
| TGGATGCCGGCAAGGCTATG+TGG | 0.641291 | 1.1:+7629756 | MS.gene016060:CDS |
| TGAAGAATCAAGATGTATGG+AGG | 0.648173 | 1.1:+7629786 | MS.gene016060:CDS |
| TGCATGTCAGAAGCAAGGGA+AGG | 0.650191 | 1.1:-7629171 | None:intergenic |
| GATAAGTACATGTATAGACA+AGG | 0.690907 | 1.1:-7629809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGCAATAGTTTATATAATT+TGG | + | chr1.1:7631084-7631103 | MS.gene016060:intron | 15.0% |
| !!! | GTATGATATTTTTTACTTTT+TGG | + | chr1.1:7630634-7630653 | MS.gene016060:intron | 15.0% |
| !!! | TTTTAAAAAATTACTAAGCA+TGG | - | chr1.1:7631059-7631078 | None:intergenic | 15.0% |
| !! | ATATTTATAGATAAGTTCAC+TGG | + | chr1.1:7630552-7630571 | MS.gene016060:intron | 20.0% |
| !! | ATTAGGGAAGTTAAAAATTA+AGG | + | chr1.1:7630685-7630704 | MS.gene016060:intron | 20.0% |
| !! | TATAGCATCATATATATTTG+TGG | + | chr1.1:7630790-7630809 | MS.gene016060:intron | 20.0% |
| !!! | AAAGTTTTTTCATTCAACTA+GGG | - | chr1.1:7631110-7631129 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTTTCATTCAACT+AGG | - | chr1.1:7631111-7631130 | None:intergenic | 20.0% |
| !!! | TGATAGATTTTTTTCTCATA+GGG | + | chr1.1:7629368-7629387 | MS.gene016060:intron | 20.0% |
| ! | AAAAGAAAATGTGGATTCAA+AGG | + | chr1.1:7631725-7631744 | MS.gene016060:CDS | 25.0% |
| ! | AAGATTATCAAACTTTGTTC+TGG | - | chr1.1:7631607-7631626 | None:intergenic | 25.0% |
| ! | ATAAGCACGTAATACTTATA+TGG | - | chr1.1:7629667-7629686 | None:intergenic | 25.0% |
| ! | ATATAAGTATTACGTGCTTA+TGG | + | chr1.1:7629666-7629685 | MS.gene016060:intron | 25.0% |
| ! | GAATTTCATGAAGTTTAGAT+TGG | - | chr1.1:7630034-7630053 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAAATCAGATT+AGG | - | chr1.1:7629717-7629736 | None:intergenic | 25.0% |
| ! | GTACTTAGAAGAAAACATTA+GGG | + | chr1.1:7630669-7630688 | MS.gene016060:intron | 25.0% |
| ! | GTATAATATTGCTCCTAAAA+GGG | - | chr1.1:7631259-7631278 | None:intergenic | 25.0% |
| ! | GTTAAAAATTAAGGAATCCA+AGG | + | chr1.1:7630694-7630713 | MS.gene016060:intron | 25.0% |
| ! | TCTGATTACTCTTCTAATTT+AGG | + | chr1.1:7630305-7630324 | MS.gene016060:intron | 25.0% |
| ! | TGTACTTAGAAGAAAACATT+AGG | + | chr1.1:7630668-7630687 | MS.gene016060:intron | 25.0% |
| !! | AAATGTTGATGGAATAACAA+GGG | + | chr1.1:7630457-7630476 | MS.gene016060:intron | 25.0% |
| !! | AATCTTTTCACCAAAAGTTA+CGG | + | chr1.1:7630605-7630624 | MS.gene016060:intron | 25.0% |
| !! | ATCAGATTAGGTGTTATATT+AGG | - | chr1.1:7629705-7629724 | None:intergenic | 25.0% |
| !! | GAACAAAGTTTGATAATCTT+TGG | + | chr1.1:7631607-7631626 | MS.gene016060:CDS | 25.0% |
| !! | TAACATCTTATTTATCCTTG+AGG | - | chr1.1:7630857-7630876 | None:intergenic | 25.0% |
| !! | TCAGATTAGGTGTTATATTA+GGG | - | chr1.1:7629704-7629723 | None:intergenic | 25.0% |
| !! | TGAAAAACTTTGCAAGTTTT+AGG | - | chr1.1:7629308-7629327 | None:intergenic | 25.0% |
| !! | TTTGAATCCACATTTTCTTT+TGG | - | chr1.1:7631726-7631745 | None:intergenic | 25.0% |
| !!! | ATAGATTTTTTTCTCATAGG+GGG | + | chr1.1:7629370-7629389 | MS.gene016060:intron | 25.0% |
| !!! | ATCTGATTTTTTCATTCTCT+AGG | + | chr1.1:7629718-7629737 | MS.gene016060:intron | 25.0% |
| !!! | CTGATAGATTTTTTTCTCAT+AGG | + | chr1.1:7629367-7629386 | MS.gene016060:intron | 25.0% |
| !!! | GATAGATTTTTTTCTCATAG+GGG | + | chr1.1:7629369-7629388 | MS.gene016060:intron | 25.0% |
| !!! | TAAGAGAAGTTTTGTATATG+AGG | - | chr1.1:7629458-7629477 | None:intergenic | 25.0% |
| !!! | TGGTTTTATAATGTTGAGTT+AGG | - | chr1.1:7630338-7630357 | None:intergenic | 25.0% |
| AAAACCAACTTGTAAAGTGA+GGG | + | chr1.1:7630351-7630370 | MS.gene016060:intron | 30.0% | |
| AAATGACTAGTAGACTAAAG+TGG | + | chr1.1:7631439-7631458 | MS.gene016060:CDS | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr1.1:7630995-7631014 | None:intergenic | 30.0% | |
| ACCAATAAAACATTCCTTCA+AGG | - | chr1.1:7629856-7629875 | None:intergenic | 30.0% | |
| ATGAGATTGAACCTAAAGTT+TGG | + | chr1.1:7631372-7631391 | MS.gene016060:CDS | 30.0% | |
| ATGGAAAGATAACAAAAGCA+TGG | - | chr1.1:7629040-7629059 | None:intergenic | 30.0% | |
| ATTATACCAATACGCTCTAA+AGG | + | chr1.1:7631272-7631291 | MS.gene016060:CDS | 30.0% | |
| CATTGAAGAATCAAGATGTA+TGG | + | chr1.1:7629783-7629802 | MS.gene016060:CDS | 30.0% | |
| CTATTAGGATTCTCTATTAG+TGG | + | chr1.1:7629228-7629247 | MS.gene016060:CDS | 30.0% | |
| GATAAGTACATGTATAGACA+AGG | - | chr1.1:7629812-7629831 | None:intergenic | 30.0% | |
| GATGTTAAATCCTTGTGATT+AGG | + | chr1.1:7630870-7630889 | MS.gene016060:intron | 30.0% | |
| GGAAGAAAAGAAAAATCAAG+AGG | - | chr1.1:7629287-7629306 | None:intergenic | 30.0% | |
| GGTATAATATTGCTCCTAAA+AGG | - | chr1.1:7631260-7631279 | None:intergenic | 30.0% | |
| GTGATTTCACAATGTCAATA+TGG | - | chr1.1:7629626-7629645 | None:intergenic | 30.0% | |
| TAAAACCAACTTGTAAAGTG+AGG | + | chr1.1:7630350-7630369 | MS.gene016060:intron | 30.0% | |
| TCGTGAATACAAAAGACATT+TGG | - | chr1.1:7630271-7630290 | None:intergenic | 30.0% | |
| TCTTCTTCCAAAAGAAAATG+TGG | + | chr1.1:7631716-7631735 | MS.gene016060:CDS | 30.0% | |
| TTATTGGTATACAGACTCAA+AGG | + | chr1.1:7629868-7629887 | MS.gene016060:CDS | 30.0% | |
| TTTCTCACAGGTATTTGATT+AGG | + | chr1.1:7629901-7629920 | MS.gene016060:intron | 30.0% | |
| ! | ATATTTTCAATCAGCTCAGT+CGG | + | chr1.1:7631231-7631250 | MS.gene016060:CDS | 30.0% |
| ! | ATCTTTTCACCAAAAGTTAC+GGG | + | chr1.1:7630606-7630625 | MS.gene016060:intron | 30.0% |
| ! | CAAATGTTGATGGAATAACA+AGG | + | chr1.1:7630456-7630475 | MS.gene016060:intron | 30.0% |
| ! | TCCTTGAAGGAATGTTTTAT+TGG | + | chr1.1:7629852-7629871 | MS.gene016060:CDS | 30.0% |
| ! | TCTTTCTATTTTCCTCTGAT+CGG | + | chr1.1:7629542-7629561 | MS.gene016060:intron | 30.0% |
| ! | TTCTCTATGCTCTCTTTTTA+AGG | - | chr1.1:7630234-7630253 | None:intergenic | 30.0% |
| ! | TTTGAGACTGTTTGAGAATT+GGG | + | chr1.1:7630940-7630959 | MS.gene016060:intron | 30.0% |
| !! | CTAATGTCAATTGATAATGC+TGG | + | chr1.1:7631528-7631547 | MS.gene016060:CDS | 30.0% |
| !!! | TTTGGTTAGCGATTTTGATT+CGG | + | chr1.1:7631625-7631644 | MS.gene016060:CDS | 30.0% |
| AAAATCAAGAGGCTAACCAT+AGG | - | chr1.1:7629276-7629295 | None:intergenic | 35.0% | |
| AAAGAGTTAGGATCAACTCT+AGG | - | chr1.1:7631693-7631712 | None:intergenic | 35.0% | |
| AAATCAAGAGGCTAACCATA+GGG | - | chr1.1:7629275-7629294 | None:intergenic | 35.0% | |
| AAATGCAAGACAAAGGTTAC+TGG | - | chr1.1:7631186-7631205 | None:intergenic | 35.0% | |
| AAATTGCCAACACAAGATGA+AGG | - | chr1.1:7629068-7629087 | None:intergenic | 35.0% | |
| AATCCGGTATACCAAACTTT+AGG | - | chr1.1:7631386-7631405 | None:intergenic | 35.0% | |
| AATGTTCCTTCAATACCAGA+TGG | - | chr1.1:7631498-7631517 | None:intergenic | 35.0% | |
| ACAAAACTTCTCTTACAGAC+AGG | + | chr1.1:7629463-7629482 | MS.gene016060:CDS | 35.0% | |
| ACCAAAATTATAAGTCCAGC+TGG | - | chr1.1:7629416-7629435 | None:intergenic | 35.0% | |
| ACTAAAAACAGCATGCAAAG+TGG | - | chr1.1:7631669-7631688 | None:intergenic | 35.0% | |
| AGAAAATGTGGATTCAAAGG+TGG | + | chr1.1:7631728-7631747 | MS.gene016060:CDS | 35.0% | |
| AGAAACCAAGGATGTTGAAT+TGG | + | chr1.1:7631767-7631786 | MS.gene016060:CDS | 35.0% | |
| ATATATATTTGTGGCTGCCA+TGG | + | chr1.1:7630799-7630818 | MS.gene016060:intron | 35.0% | |
| ATCACAACAAAGACGTAATC+CGG | - | chr1.1:7631402-7631421 | None:intergenic | 35.0% | |
| ATGAAACCTATACTTTCCTG+TGG | - | chr1.1:7631213-7631232 | None:intergenic | 35.0% | |
| ATTCTCAGAAACATCGTAGT+AGG | + | chr1.1:7629582-7629601 | MS.gene016060:intron | 35.0% | |
| CAAAAAGACTCCTAATCACA+AGG | - | chr1.1:7630883-7630902 | None:intergenic | 35.0% | |
| CAAATACCTGTGAGAAAGAT+GGG | - | chr1.1:7629898-7629917 | None:intergenic | 35.0% | |
| CTGAGTTTGAATATCCTTGA+AGG | + | chr1.1:7629839-7629858 | MS.gene016060:CDS | 35.0% | |
| CTTATTTATCCTTGAGGTAG+AGG | - | chr1.1:7630851-7630870 | None:intergenic | 35.0% | |
| GAACCTAAAGTTTGGTATAC+CGG | + | chr1.1:7631380-7631399 | MS.gene016060:CDS | 35.0% | |
| GATATTCAAACTCAGTGCAA+AGG | - | chr1.1:7629834-7629853 | None:intergenic | 35.0% | |
| GCATTTCATCTTCCCTTATA+TGG | + | chr1.1:7629963-7629982 | MS.gene016060:intron | 35.0% | |
| GGAAGAAGAATGAAAGAGTT+AGG | - | chr1.1:7631705-7631724 | None:intergenic | 35.0% | |
| GTCTTGCATCAAATGATAGA+AGG | - | chr1.1:7630084-7630103 | None:intergenic | 35.0% | |
| TAGATAAGTTCACTGGAACT+TGG | + | chr1.1:7630559-7630578 | MS.gene016060:intron | 35.0% | |
| TATTGACACTTCAGAAACCA+AGG | + | chr1.1:7631755-7631774 | MS.gene016060:CDS | 35.0% | |
| TCAAATACCTGTGAGAAAGA+TGG | - | chr1.1:7629899-7629918 | None:intergenic | 35.0% | |
| TCTTCTATTGGTGCACTATT+AGG | + | chr1.1:7629213-7629232 | MS.gene016060:CDS | 35.0% | |
| TGAAAACCTTCATCTTGTGT+TGG | + | chr1.1:7629059-7629078 | MS.gene016060:CDS | 35.0% | |
| TGAAATTCTCATGTCTACTG+TGG | + | chr1.1:7630046-7630065 | MS.gene016060:intron | 35.0% | |
| TGAAGAATCAAGATGTATGG+AGG | + | chr1.1:7629786-7629805 | MS.gene016060:CDS | 35.0% | |
| TGCACCAATAGAAGAACTAA+AGG | - | chr1.1:7629208-7629227 | None:intergenic | 35.0% | |
| TGGAAGAAAATGCAAGACAA+AGG | - | chr1.1:7631193-7631212 | None:intergenic | 35.0% | |
| TGGACTTCTTTCATCATCAT+GGG | + | chr1.1:7631548-7631567 | MS.gene016060:CDS | 35.0% | |
| TTCAATAAGCTCTCCATGAT+AGG | + | chr1.1:7631014-7631033 | MS.gene016060:intron | 35.0% | |
| TTTGCATCAAGTGAGTTAGA+AGG | + | chr1.1:7630150-7630169 | MS.gene016060:intron | 35.0% | |
| ! | AAGGGTTTTACTTATAGCAG+TGG | + | chr1.1:7630475-7630494 | MS.gene016060:intron | 35.0% |
| ! | ACACAAGATGAAGGTTTTCA+TGG | - | chr1.1:7629059-7629078 | None:intergenic | 35.0% |
| ! | CATTCAGAGACTTACTCTTT+TGG | + | chr1.1:7631301-7631320 | MS.gene016060:CDS | 35.0% |
| ! | CTTGTGATTAGGAGTCTTTT+TGG | + | chr1.1:7630881-7630900 | MS.gene016060:intron | 35.0% |
| ! | TCATTTGTACTTTTGCCAAG+TGG | - | chr1.1:7630760-7630779 | None:intergenic | 35.0% |
| ! | TCCAGCTGGACTTATAATTT+TGG | + | chr1.1:7629412-7629431 | MS.gene016060:CDS | 35.0% |
| ! | TTGACTCGAAATAAAGCTCT+CGG | - | chr1.1:7630199-7630218 | None:intergenic | 35.0% |
| ! | TTTCTTCCACAGGAAAGTAT+AGG | + | chr1.1:7631204-7631223 | MS.gene016060:intron | 35.0% |
| !! | CTTTGAGACTGTTTGAGAAT+TGG | + | chr1.1:7630939-7630958 | MS.gene016060:intron | 35.0% |
| !! | GCTGGACTTATAATTTTGGT+CGG | + | chr1.1:7629416-7629435 | MS.gene016060:CDS | 35.0% |
| !! | TCATCTTGTGTTGGCAATTT+TGG | + | chr1.1:7629068-7629087 | MS.gene016060:CDS | 35.0% |
| !! | TGTGCCTTTAGTTCTTCTAT+TGG | + | chr1.1:7629201-7629220 | MS.gene016060:CDS | 35.0% |
| AACTTTGCATGTCAGAAGCA+AGG | - | chr1.1:7629179-7629198 | None:intergenic | 40.0% | |
| AAGTGGTGCAATTGTTGTGA+AGG | + | chr1.1:7629988-7630007 | MS.gene016060:intron | 40.0% | |
| ACTTTGCATGTCAGAAGCAA+GGG | - | chr1.1:7629178-7629197 | None:intergenic | 40.0% | |
| AGAACGTGGACAAATGTTGA+TGG | + | chr1.1:7630446-7630465 | MS.gene016060:intron | 40.0% | |
| AGACACCAATTCAACATCCT+TGG | - | chr1.1:7631775-7631794 | None:intergenic | 40.0% | |
| AGTTCACTGGAACTTGGTAT+TGG | + | chr1.1:7630565-7630584 | MS.gene016060:intron | 40.0% | |
| AGTTGCTCTATGGTCTATCA+GGG | + | chr1.1:7631328-7631347 | MS.gene016060:CDS | 40.0% | |
| ATAGCCCTCACTTTACAAGT+TGG | - | chr1.1:7630358-7630377 | None:intergenic | 40.0% | |
| ATTTATCCTTGAGGTAGAGG+CGG | - | chr1.1:7630848-7630867 | None:intergenic | 40.0% | |
| CGTGCTTATGGTAATTTCCA+TGG | + | chr1.1:7629678-7629697 | MS.gene016060:intron | 40.0% | |
| CTCTCGGAGTACATGTAAAT+GGG | - | chr1.1:7630183-7630202 | None:intergenic | 40.0% | |
| CTGGACTTCTTTCATCATCA+TGG | + | chr1.1:7631547-7631566 | MS.gene016060:CDS | 40.0% | |
| GCAATTGTTGTGAAGGTAGT+GGG | + | chr1.1:7629995-7630014 | MS.gene016060:intron | 40.0% | |
| GGACTTCTTTCATCATCATG+GGG | + | chr1.1:7631549-7631568 | MS.gene016060:CDS | 40.0% | |
| GGCATCTTTGTTCACCTTAT+AGG | + | chr1.1:7629249-7629268 | MS.gene016060:CDS | 40.0% | |
| TCTTCCCTTATATGGACAAG+TGG | + | chr1.1:7629971-7629990 | MS.gene016060:intron | 40.0% | |
| TGCAATTGTTGTGAAGGTAG+TGG | + | chr1.1:7629994-7630013 | MS.gene016060:intron | 40.0% | |
| TGCACCACTTGTCCATATAA+GGG | - | chr1.1:7629978-7629997 | None:intergenic | 40.0% | |
| TGGTATACAGACTCAAAGGA+TGG | + | chr1.1:7629872-7629891 | MS.gene016060:CDS | 40.0% | |
| TTGCACCACTTGTCCATATA+AGG | - | chr1.1:7629979-7629998 | None:intergenic | 40.0% | |
| TTTGAGCTGAGTACAAGCAT+AGG | - | chr1.1:7631468-7631487 | None:intergenic | 40.0% | |
| ! | ACTTTTGCCATATCTCGATG+TGG | + | chr1.1:7630394-7630413 | MS.gene016060:intron | 40.0% |
| ! | ATACTCGAACCCGTAACTTT+TGG | - | chr1.1:7630618-7630637 | None:intergenic | 40.0% |
| ! | CTTTGTCCATCTGGTATTGA+AGG | + | chr1.1:7631489-7631508 | MS.gene016060:CDS | 40.0% |
| ! | CTTTTGCCATATCTCGATGT+GGG | + | chr1.1:7630395-7630414 | MS.gene016060:intron | 40.0% |
| ! | GGTTTTACTTATAGCAGTGG+CGG | + | chr1.1:7630478-7630497 | MS.gene016060:intron | 40.0% |
| ! | TAGGTGTTATATTAGGGCCA+TGG | - | chr1.1:7629698-7629717 | None:intergenic | 40.0% |
| ! | TCTCTTGTACACAGTGTTGA+TGG | + | chr1.1:7631792-7631811 | MS.gene016060:CDS | 40.0% |
| ! | TGAGAATTGGGAGAGCATAT+GGG | + | chr1.1:7630952-7630971 | MS.gene016060:intron | 40.0% |
| ! | TGTCTTGCATTTTCTTCCAC+AGG | + | chr1.1:7631194-7631213 | MS.gene016060:intron | 40.0% |
| ! | TTGAGAATTGGGAGAGCATA+TGG | + | chr1.1:7630951-7630970 | MS.gene016060:intron | 40.0% |
| ! | TTTTGGACTCAGTTGCTCTA+TGG | + | chr1.1:7631318-7631337 | MS.gene016060:CDS | 40.0% |
| !! | CGTAATCCTTTAGAGCGTAT+TGG | - | chr1.1:7631281-7631300 | None:intergenic | 40.0% |
| !!! | CAATTTTGGCCTTAACAGCA+GGG | + | chr1.1:7629082-7629101 | MS.gene016060:CDS | 40.0% |
| !!! | TTTTTCTCATAGGGGGTGTT+TGG | + | chr1.1:7629377-7629396 | MS.gene016060:intron | 40.0% |
| ATGGTAGAACAGCGACGATT+AGG | - | chr1.1:7631040-7631059 | None:intergenic | 45.0% | |
| CACCAAAACTTTGTGGATGC+CGG | + | chr1.1:7629743-7629762 | MS.gene016060:CDS | 45.0% | |
| CAGTTGCTCTATGGTCTATC+AGG | + | chr1.1:7631327-7631346 | MS.gene016060:CDS | 45.0% | |
| CTAGGTGCACCAAAACTTTG+TGG | + | chr1.1:7629736-7629755 | MS.gene016060:intron | 45.0% | |
| CTCAACACACTCTCATGTTC+AGG | + | chr1.1:7630420-7630439 | MS.gene016060:intron | 45.0% | |
| CTGTGCAACACATGCATCAA+TGG | - | chr1.1:7629136-7629155 | None:intergenic | 45.0% | |
| CTTCTTTCATCATCATGGGG+TGG | + | chr1.1:7631552-7631571 | MS.gene016060:CDS | 45.0% | |
| GCTCTCGGAGTACATGTAAA+TGG | - | chr1.1:7630184-7630203 | None:intergenic | 45.0% | |
| TCATGTTCAGGACTAGAACG+TGG | + | chr1.1:7630432-7630451 | MS.gene016060:intron | 45.0% | |
| TGAGATCCCACATCGAGATA+TGG | - | chr1.1:7630404-7630423 | None:intergenic | 45.0% | |
| TGTTCACCTTATAGGCCCTA+TGG | + | chr1.1:7629257-7629276 | MS.gene016060:CDS | 45.0% | |
| ! | AGCTCAAAGCTTTGTCCATC+TGG | + | chr1.1:7631480-7631499 | MS.gene016060:CDS | 45.0% |
| ! | GGTTTGATGACTATTCCAGC+TGG | + | chr1.1:7629398-7629417 | MS.gene016060:CDS | 45.0% |
| !! | TTGTTGTGAAGGTAGTGGGT+TGG | + | chr1.1:7629999-7630018 | MS.gene016060:intron | 45.0% |
| !!! | GCAATTTTGGCCTTAACAGC+AGG | + | chr1.1:7629081-7629100 | MS.gene016060:CDS | 45.0% |
| AAACTTTGTGGATGCCGGCA+AGG | + | chr1.1:7629748-7629767 | MS.gene016060:CDS | 50.0% | |
| AGCGACGATTAGGCCTATCA+TGG | - | chr1.1:7631030-7631049 | None:intergenic | 50.0% | |
| AGGTATGCACGTTCGTACCT+TGG | - | chr1.1:7630714-7630733 | None:intergenic | 50.0% | |
| CGTGCATACCTCTGCTTAAC+AGG | + | chr1.1:7630723-7630742 | MS.gene016060:intron | 50.0% | |
| CTTGTGCATGATCCGATCAG+AGG | - | chr1.1:7629557-7629576 | None:intergenic | 50.0% | |
| CTTTCATCATCATGGGGTGG+TGG | + | chr1.1:7631555-7631574 | MS.gene016060:CDS | 50.0% | |
| GGCTAACCATAGGGCCTATA+AGG | - | chr1.1:7629266-7629285 | None:intergenic | 50.0% | |
| GTCAGAAGCAAGGGAAGGAT+GGG | - | chr1.1:7629169-7629188 | None:intergenic | 50.0% | |
| TGCATGTCAGAAGCAAGGGA+AGG | - | chr1.1:7629174-7629193 | None:intergenic | 50.0% | |
| TGTCAGAAGCAAGGGAAGGA+TGG | - | chr1.1:7629170-7629189 | None:intergenic | 50.0% | |
| ! | TGCCGGCATCCACAAAGTTT+TGG | - | chr1.1:7629748-7629767 | None:intergenic | 50.0% |
| ! | TGTAGTCCACATAGCCTTGC+CGG | - | chr1.1:7629765-7629784 | None:intergenic | 50.0% |
| !! | AGCTCAGTCGGTTCCCTTTT+AGG | + | chr1.1:7631243-7631262 | MS.gene016060:CDS | 50.0% |
| GGATGGCCCATCTTTCTCAC+AGG | + | chr1.1:7629889-7629908 | MS.gene016060:CDS | 55.0% | |
| TCCAGCACTCCCTGCTGTTA+AGG | - | chr1.1:7629094-7629113 | None:intergenic | 55.0% | |
| TTTGCCAAGTGGCTATGCGC+AGG | - | chr1.1:7630749-7630768 | None:intergenic | 55.0% | |
| AGGCGGAGCTTCCTTGTGAC+AGG | - | chr1.1:7630831-7630850 | None:intergenic | 60.0% | |
| CATGGCATCCCCCTGTCACA+AGG | + | chr1.1:7630817-7630836 | MS.gene016060:intron | 60.0% | |
| CGGAGCTTCCTTGTGACAGG+GGG | - | chr1.1:7630828-7630847 | None:intergenic | 60.0% | |
| CTTGTGACAGGGGGATGCCA+TGG | - | chr1.1:7630819-7630838 | None:intergenic | 60.0% | |
| GAAGCTCCGCCTCTACCTCA+AGG | + | chr1.1:7630839-7630858 | MS.gene016060:intron | 60.0% | |
| GCGGAGCTTCCTTGTGACAG+GGG | - | chr1.1:7630829-7630848 | None:intergenic | 60.0% | |
| GGCGGAGCTTCCTTGTGACA+GGG | - | chr1.1:7630830-7630849 | None:intergenic | 60.0% | |
| TGCGCAGGCCTGTTAAGCAG+AGG | - | chr1.1:7630734-7630753 | None:intergenic | 60.0% | |
| TGGATGCCGGCAAGGCTATG+TGG | + | chr1.1:7629756-7629775 | MS.gene016060:CDS | 60.0% | |
| ! | GCCTTAACAGCAGGGAGTGC+TGG | + | chr1.1:7629090-7629109 | MS.gene016060:CDS | 60.0% |
| !! | AACAGCAGGGAGTGCTGGAG+TGG | + | chr1.1:7629095-7629114 | MS.gene016060:CDS | 60.0% |
| CAGGCCTGCGCATAGCCACT+TGG | + | chr1.1:7630742-7630761 | MS.gene016060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 7629009 | 7631824 | 7629009 | ID=MS.gene016060 |
| chr1.1 | mRNA | 7629009 | 7631824 | 7629009 | ID=MS.gene016060.t1;Parent=MS.gene016060 |
| chr1.1 | exon | 7629009 | 7629278 | 7629009 | ID=MS.gene016060.t1.exon1;Parent=MS.gene016060.t1 |
| chr1.1 | CDS | 7629009 | 7629278 | 7629009 | ID=cds.MS.gene016060.t1;Parent=MS.gene016060.t1 |
| chr1.1 | exon | 7629389 | 7629484 | 7629389 | ID=MS.gene016060.t1.exon2;Parent=MS.gene016060.t1 |
| chr1.1 | CDS | 7629389 | 7629484 | 7629389 | ID=cds.MS.gene016060.t1;Parent=MS.gene016060.t1 |
| chr1.1 | exon | 7629740 | 7629910 | 7629740 | ID=MS.gene016060.t1.exon3;Parent=MS.gene016060.t1 |
| chr1.1 | CDS | 7629740 | 7629910 | 7629740 | ID=cds.MS.gene016060.t1;Parent=MS.gene016060.t1 |
| chr1.1 | exon | 7631216 | 7631824 | 7631216 | ID=MS.gene016060.t1.exon4;Parent=MS.gene016060.t1 |
| chr1.1 | CDS | 7631216 | 7631824 | 7631216 | ID=cds.MS.gene016060.t1;Parent=MS.gene016060.t1 |
| Gene Sequence |
| Protein sequence |
