Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016080.t1 | XP_006427874.1 | 28 | 250 | 146 | 9 | 2 | 233 | 50 | 283 | 4.00E-17 | 99.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016080.t1 | V4UNT7 | 28.0 | 250 | 146 | 9 | 2 | 233 | 50 | 283 | 2.9e-17 | 99.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene65952 | MS.gene016080 | PPI |
MS.gene016080 | MS.gene33586 | PPI |
MS.gene016080 | MS.gene007962 | PPI |
MS.gene016080 | MS.gene039955 | PPI |
MS.gene016080 | MS.gene62998 | PPI |
MS.gene016080 | MS.gene026616 | PPI |
MS.gene016080 | MS.gene054900 | PPI |
MS.gene016080 | MS.gene99888 | PPI |
MS.gene016080 | MS.gene031882 | PPI |
MS.gene30285 | MS.gene016080 | PPI |
MS.gene016080 | MS.gene67910 | PPI |
MS.gene30034 | MS.gene016080 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016080.t1 | MTR_7g110390 | 26.000 | 150 | 105 | 3 | 5 | 153 | 14 | 158 | 7.29e-17 | 82.4 |
MS.gene016080.t1 | MTR_3g095410 | 26.786 | 168 | 115 | 5 | 2 | 168 | 55 | 215 | 5.09e-14 | 74.3 |
MS.gene016080.t1 | MTR_3g050240 | 25.786 | 159 | 106 | 4 | 5 | 162 | 175 | 322 | 8.47e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016080.t1 | AT5G09840 | 26.820 | 261 | 156 | 11 | 2 | 240 | 71 | 318 | 1.91e-17 | 85.1 |
MS.gene016080.t1 | AT3G62210 | 26.380 | 163 | 110 | 5 | 1 | 162 | 21 | 174 | 3.77e-15 | 75.5 |
MS.gene016080.t1 | AT3G62200 | 26.250 | 160 | 108 | 4 | 4 | 162 | 30 | 180 | 1.48e-13 | 72.8 |
MS.gene016080.t1 | AT3G62050 | 29.752 | 121 | 70 | 5 | 4 | 121 | 14 | 122 | 2.81e-11 | 62.0 |
Find 105 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCGAATAACAACATTTA+TGG | 0.129146 | 1.2:-8038960 | None:intergenic |
TGTTGAAACCTTGAAGTTTA+TGG | 0.131106 | 1.2:+8037717 | MS.gene016080:CDS |
TGTAAAGCGTTTAAACTTAC+AGG | 0.197901 | 1.2:+8038788 | MS.gene016080:CDS |
TGGTGTCCACCGGCGTATTC+TGG | 0.214087 | 1.2:+8037002 | MS.gene016080:CDS |
ATGGGACCCAATCTCTCCTT+TGG | 0.269593 | 1.2:-8038941 | None:intergenic |
AACCGGGTTTCGATAGTATA+TGG | 0.277742 | 1.2:-8037860 | None:intergenic |
TTCTTTAATGTCTGTAACTT+TGG | 0.293926 | 1.2:+8039576 | MS.gene016080:CDS |
ATTCGAATAACAACATTTAT+GGG | 0.319102 | 1.2:-8038959 | None:intergenic |
GAGAACTGCCGGACTCTAAA+AGG | 0.325854 | 1.2:-8037837 | None:intergenic |
AGCAATACTTATATTATTCC+TGG | 0.335011 | 1.2:-8039065 | None:intergenic |
TTCTGAGGCATCCCACTTCC+CGG | 0.343788 | 1.2:-8037767 | None:intergenic |
GGACTCACTGTGAGAGCATT+TGG | 0.344271 | 1.2:+8037127 | MS.gene016080:CDS |
TCAATATTGGTCCCAACCTT+AGG | 0.345166 | 1.2:-8039208 | None:intergenic |
CTTGTACTCGTACTGGTAAA+AGG | 0.346241 | 1.2:-8038747 | None:intergenic |
ACCTTCTTCCATAAACTTCA+AGG | 0.372927 | 1.2:-8037725 | None:intergenic |
TGGGACCCAATCTCTCCTTT+GGG | 0.373712 | 1.2:-8038940 | None:intergenic |
TTATTAGCAACATGCATTCC+TGG | 0.376131 | 1.2:+8037641 | MS.gene016080:CDS |
CGGAATATTAGAAAATATAA+AGG | 0.388369 | 1.2:+8039723 | MS.gene016080:CDS |
CTCGTGCTGAACTCAATTCC+AGG | 0.394340 | 1.2:+8039047 | MS.gene016080:CDS |
CACTTCTATATAATCAATAT+TGG | 0.395917 | 1.2:-8039221 | None:intergenic |
GACTTGATTGATGCACCTTC+CGG | 0.397470 | 1.2:+8037205 | MS.gene016080:CDS |
GGTGTCCACCGGCGTATTCT+GGG | 0.404162 | 1.2:+8037003 | MS.gene016080:CDS |
TCTCTTCGACTAGGCGGTAT+AGG | 0.405051 | 1.2:+8037094 | MS.gene016080:CDS |
CAATATTGGTCCCAACCTTA+GGG | 0.414014 | 1.2:-8039207 | None:intergenic |
GTCAAACCCAAAGGAGAGAT+TGG | 0.419092 | 1.2:+8038934 | MS.gene016080:CDS |
AATCACTATCACCCGCGATT+AGG | 0.434677 | 1.2:-8037693 | None:intergenic |
TTTACAGAGGAAGACATTGT+AGG | 0.440045 | 1.2:+8039835 | MS.gene016080:intron |
GACTCTAAAAGGACTATGTT+AGG | 0.442516 | 1.2:-8037826 | None:intergenic |
ACGGACAAGTATTGTGGAAC+TGG | 0.443416 | 1.2:+8037803 | MS.gene016080:CDS |
TTTGTTCAAACCCTAAGGTT+GGG | 0.454926 | 1.2:+8039197 | MS.gene016080:CDS |
TCTAAACCACCATTGAGTTT+AGG | 0.456749 | 1.2:-8039651 | None:intergenic |
CTAGGCGGTATAGGAGTAGA+AGG | 0.461409 | 1.2:+8037103 | MS.gene016080:CDS |
TAACCGTCGTGCTGAGGAAT+GGG | 0.462670 | 1.2:+8039683 | MS.gene016080:CDS |
CAATGGTGGTTTAGAGTGGA+TGG | 0.462773 | 1.2:+8039659 | MS.gene016080:CDS |
ATTTGGAAACGTTAAGAAGA+TGG | 0.466034 | 1.2:+8037144 | MS.gene016080:CDS |
TGGAATTTGTTCAAACCCTA+AGG | 0.466799 | 1.2:+8039192 | MS.gene016080:CDS |
ACCTTGAAGTTTATGGAAGA+AGG | 0.468779 | 1.2:+8037724 | MS.gene016080:CDS |
TTGAGTTTGCTGAAATTCTC+CGG | 0.469079 | 1.2:+8039547 | MS.gene016080:CDS |
AAGTCATGATCGCCGGGAAG+TGG | 0.469652 | 1.2:+8037755 | MS.gene016080:CDS |
ATTGATGCACCTTCCGGCGG+AGG | 0.472148 | 1.2:+8037211 | MS.gene016080:CDS |
GATTAGGAGGATATTTCCCT+TGG | 0.476900 | 1.2:-8037677 | None:intergenic |
CGCAAACCTTGTACTCGTAC+TGG | 0.478424 | 1.2:-8038754 | None:intergenic |
AAACTAATATTGCCGTGGCT+TGG | 0.492637 | 1.2:-8039145 | None:intergenic |
CGAAGGCAATTCAAAGCTGC+AGG | 0.493964 | 1.2:+8037178 | MS.gene016080:CDS |
TTGCTCAACAATATTGGTGG+AGG | 0.495372 | 1.2:+8039265 | MS.gene016080:CDS |
ATGTCTGTAACTTTGGTGAA+AGG | 0.498599 | 1.2:+8039583 | MS.gene016080:CDS |
ATTTGTTCAAACCCTAAGGT+TGG | 0.500980 | 1.2:+8039196 | MS.gene016080:CDS |
TTTGGAAACGTTAAGAAGAT+GGG | 0.502661 | 1.2:+8037145 | MS.gene016080:CDS |
TCAGAACTGCTGATGGAATA+CGG | 0.510494 | 1.2:+8037784 | MS.gene016080:CDS |
CACTATCACCCGCGATTAGG+AGG | 0.515264 | 1.2:-8037690 | None:intergenic |
GCTTCTTAGCTGTGTAGGAA+TGG | 0.518991 | 1.2:-8037041 | None:intergenic |
AGTGTAGGAAATACATGCTC+CGG | 0.521068 | 1.2:-8038998 | None:intergenic |
GGCATAAAGTCATGATCGCC+GGG | 0.521161 | 1.2:+8037749 | MS.gene016080:CDS |
TCAAACCCAAAGGAGAGATT+GGG | 0.524842 | 1.2:+8038935 | MS.gene016080:CDS |
ACCGGGTTTCGATAGTATAT+GGG | 0.527100 | 1.2:-8037859 | None:intergenic |
ATAGTATATGGGAGAACTGC+CGG | 0.528774 | 1.2:-8037848 | None:intergenic |
GGATGCCTCAGAACTGCTGA+TGG | 0.536396 | 1.2:+8037777 | MS.gene016080:CDS |
GTAACCGTCGTGCTGAGGAA+TGG | 0.536553 | 1.2:+8039682 | MS.gene016080:CDS |
ATTAGGAGGATATTTCCCTT+GGG | 0.539334 | 1.2:-8037676 | None:intergenic |
TATTGCTGATGCTTTGCAAT+GGG | 0.540134 | 1.2:+8039081 | MS.gene016080:CDS |
TCATAGCTTCTTAGCTGTGT+AGG | 0.543817 | 1.2:-8037046 | None:intergenic |
GGGCATAAAGTCATGATCGC+CGG | 0.545017 | 1.2:+8037748 | MS.gene016080:CDS |
AGATTAGCTGACAGCCACCT+TGG | 0.547787 | 1.2:+8039172 | MS.gene016080:CDS |
AGACATTAAAGAACTTCCTC+CGG | 0.549304 | 1.2:-8039566 | None:intergenic |
GGAGGAAATCGATTAGAGCC+AGG | 0.557630 | 1.2:+8039283 | MS.gene016080:CDS |
GGAAATATCCTCCTAATCGC+GGG | 0.561694 | 1.2:+8037682 | MS.gene016080:CDS |
AACTCAATGGTGGTTTAGAG+TGG | 0.565618 | 1.2:+8039655 | MS.gene016080:CDS |
GTTTAGGCTTCAGCATGACA+TGG | 0.572400 | 1.2:-8039635 | None:intergenic |
AGTCATGATCGCCGGGAAGT+GGG | 0.573165 | 1.2:+8037756 | MS.gene016080:CDS |
TTGAAGTTTATGGAAGAAGG+TGG | 0.579140 | 1.2:+8037727 | MS.gene016080:CDS |
TGGAATACGGACAAGTATTG+TGG | 0.593268 | 1.2:+8037797 | MS.gene016080:CDS |
TTTGGTGAAAGGTTTCTGAT+CGG | 0.594767 | 1.2:+8039594 | MS.gene016080:CDS |
ACTCAATGGTAACTTTCTTG+TGG | 0.596798 | 1.2:-8039111 | None:intergenic |
ATGCTGAAGCCTAAACTCAA+TGG | 0.597722 | 1.2:+8039642 | MS.gene016080:CDS |
TTGATTGATGCACCTTCCGG+CGG | 0.599582 | 1.2:+8037208 | MS.gene016080:CDS |
TAGGGTTTGAACAAATTCCA+AGG | 0.603209 | 1.2:-8039189 | None:intergenic |
TTGGAAACGTTAAGAAGATG+GGG | 0.604383 | 1.2:+8037146 | MS.gene016080:CDS |
CAATACTAACCTCCGCCGGA+AGG | 0.607198 | 1.2:-8037220 | None:intergenic |
GGGAAATATCCTCCTAATCG+CGG | 0.607421 | 1.2:+8037681 | MS.gene016080:CDS |
GATGGGTAACCGTCGTGCTG+AGG | 0.615512 | 1.2:+8039677 | MS.gene016080:CDS |
TGGAACTCGAGTACACTCAA+TGG | 0.616193 | 1.2:-8039125 | None:intergenic |
TGAAGTTTATGGAAGAAGGT+GGG | 0.621230 | 1.2:+8037728 | MS.gene016080:CDS |
CTGAAGCCTAAACTCAATGG+TGG | 0.628478 | 1.2:+8039645 | MS.gene016080:CDS |
TGTACAAACTAATATTGCCG+TGG | 0.637325 | 1.2:-8039150 | None:intergenic |
CTGGTCGCGTGAAAATCCCA+AGG | 0.638364 | 1.2:+8037660 | MS.gene016080:CDS |
GGGCTCCAAATTTCAAAATG+CGG | 0.638600 | 1.2:+8039703 | MS.gene016080:CDS |
ACAATCATAATGGTGTCCAC+CGG | 0.640527 | 1.2:+8036992 | None:intergenic |
GTATTCCATCAGCAGTTCTG+AGG | 0.642202 | 1.2:-8037782 | None:intergenic |
GTATTGCTGATGCTTTGCAA+TGG | 0.642280 | 1.2:+8039080 | MS.gene016080:CDS |
ATCAGTGCTTCTCTTCGACT+AGG | 0.644770 | 1.2:+8037085 | MS.gene016080:CDS |
AATGGTGGTTTAGAGTGGAT+GGG | 0.650032 | 1.2:+8039660 | MS.gene016080:CDS |
CAAACAATACTAACCTCCGC+CGG | 0.657717 | 1.2:-8037224 | None:intergenic |
ACAGGATGAGTCAAACCCAA+AGG | 0.659275 | 1.2:+8038925 | MS.gene016080:intron |
TGTACTCGAGTTCCAAGCCA+CGG | 0.661299 | 1.2:+8039133 | MS.gene016080:CDS |
TCCCATATACTATCGAAACC+CGG | 0.668326 | 1.2:+8037858 | MS.gene016080:CDS |
TGGAAACGTTAAGAAGATGG+GGG | 0.675969 | 1.2:+8037147 | MS.gene016080:CDS |
ATATTGATTATATAGAAGTG+TGG | 0.680795 | 1.2:+8039224 | MS.gene016080:CDS |
GAGCCCATTCCTCAGCACGA+CGG | 0.681884 | 1.2:-8039686 | None:intergenic |
AGTGCTTCTCTTCGACTAGG+CGG | 0.682637 | 1.2:+8037088 | MS.gene016080:CDS |
GGCGGTATAGGAGTAGAAGG+TGG | 0.691425 | 1.2:+8037106 | MS.gene016080:CDS |
TGGTCGCGTGAAAATCCCAA+GGG | 0.691802 | 1.2:+8037661 | MS.gene016080:CDS |
GACATCCCAGAATACGCCGG+TGG | 0.704952 | 1.2:-8037008 | None:intergenic |
CTCGACATCCCAGAATACGC+CGG | 0.705331 | 1.2:-8037011 | None:intergenic |
GGTTTGAACAAATTCCAAGG+TGG | 0.708113 | 1.2:-8039186 | None:intergenic |
AGTTTGCTGAAATTCTCCGG+AGG | 0.726467 | 1.2:+8039550 | MS.gene016080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGAAAACATTTTAAAAAT+GGG | - | chr1.2:8037327-8037346 | None:intergenic | 10.0% |
!! | TAAAATTGTAATCAAATGTT+AGG | + | chr1.2:8038403-8038422 | MS.gene016080:intron | 15.0% |
!!! | AAAAGTGTTCTTATTTATAT+TGG | - | chr1.2:8038669-8038688 | None:intergenic | 15.0% |
!!! | AAAGTGTTCTTATTTATATT+GGG | - | chr1.2:8038668-8038687 | None:intergenic | 15.0% |
!!! | CAAAGAAAACATTTTAAAAA+TGG | - | chr1.2:8037328-8037347 | None:intergenic | 15.0% |
!! | AAATGCTTATCAGAATATAA+AGG | - | chr1.2:8038820-8038839 | None:intergenic | 20.0% |
!! | AATGCTTATCAGAATATAAA+GGG | - | chr1.2:8038819-8038838 | None:intergenic | 20.0% |
!! | AATGTTATACTTCTATTGTT+AGG | - | chr1.2:8038208-8038227 | None:intergenic | 20.0% |
!! | AATTATAATTAGACTTTGGA+GGG | + | chr1.2:8038059-8038078 | MS.gene016080:intron | 20.0% |
!! | AATTCGAATAACAACATTTA+TGG | - | chr1.2:8038963-8038982 | None:intergenic | 20.0% |
!! | ACAGAATTATAATTAGACTT+TGG | + | chr1.2:8038055-8038074 | MS.gene016080:intron | 20.0% |
!! | ATCATACAAAAAAACTATTC+TGG | - | chr1.2:8037283-8037302 | None:intergenic | 20.0% |
!! | ATGAAAATAAAAAACGTACA+TGG | - | chr1.2:8039314-8039333 | None:intergenic | 20.0% |
!! | ATTCGAATAACAACATTTAT+GGG | - | chr1.2:8038962-8038981 | None:intergenic | 20.0% |
!! | CACTTCTATATAATCAATAT+TGG | - | chr1.2:8039224-8039243 | None:intergenic | 20.0% |
!! | CGGAATATTAGAAAATATAA+AGG | + | chr1.2:8039723-8039742 | MS.gene016080:CDS | 20.0% |
!! | GAATAATTTGATATGATGAT+TGG | + | chr1.2:8039483-8039502 | MS.gene016080:intron | 20.0% |
!! | TCATAAATTAAAGTTACTCA+AGG | - | chr1.2:8038373-8038392 | None:intergenic | 20.0% |
!! | TCATACAAAAAAACTATTCT+GGG | - | chr1.2:8037282-8037301 | None:intergenic | 20.0% |
!! | TGAAATTGAAATTATTGATG+AGG | + | chr1.2:8037457-8037476 | MS.gene016080:intron | 20.0% |
!! | TTACATTATCAAATGTTATC+AGG | + | chr1.2:8038688-8038707 | MS.gene016080:intron | 20.0% |
!! | TTCAATTAAATATTGCAGTT+AGG | + | chr1.2:8038092-8038111 | MS.gene016080:intron | 20.0% |
!!! | AAGTGTTCTTATTTATATTG+GGG | - | chr1.2:8038667-8038686 | None:intergenic | 20.0% |
!!! | AGTTTGGTAATTTTTTAGTT+GGG | + | chr1.2:8037967-8037986 | MS.gene016080:intron | 20.0% |
!!! | ATATTGATTATATAGAAGTG+TGG | + | chr1.2:8039224-8039243 | MS.gene016080:CDS | 20.0% |
!!! | ATGTTTTCATTTCCAAAAAT+AGG | - | chr1.2:8037932-8037951 | None:intergenic | 20.0% |
!!! | TAATCAAATGTTAGGTTTTA+GGG | + | chr1.2:8038411-8038430 | MS.gene016080:intron | 20.0% |
!!! | TGATTTAACATTCCTATTTT+TGG | + | chr1.2:8037917-8037936 | MS.gene016080:intron | 20.0% |
!!! | TTGAGTAACTTTAATTTATG+AGG | + | chr1.2:8038372-8038391 | MS.gene016080:intron | 20.0% |
!!! | TTGTTGAATAATTTTACATG+AGG | - | chr1.2:8038291-8038310 | None:intergenic | 20.0% |
! | AGCAATACTTATATTATTCC+TGG | - | chr1.2:8039068-8039087 | None:intergenic | 25.0% |
! | GAATTATAATTAGACTTTGG+AGG | + | chr1.2:8038058-8038077 | MS.gene016080:intron | 25.0% |
! | TCGATAATAAATCATTGAAC+TGG | - | chr1.2:8039363-8039382 | None:intergenic | 25.0% |
! | TGCAATATTTAATTGAAGAG+CGG | - | chr1.2:8038089-8038108 | None:intergenic | 25.0% |
! | TTCTTTAATGTCTGTAACTT+TGG | + | chr1.2:8039576-8039595 | MS.gene016080:CDS | 25.0% |
! | TTGAATGAAATGAAACTAAC+CGG | - | chr1.2:8037880-8037899 | None:intergenic | 25.0% |
! | TTGGAAGTAAAAACATATAG+AGG | - | chr1.2:8038344-8038363 | None:intergenic | 25.0% |
! | TTGTAGGTGTAAAAAGAAAT+GGG | + | chr1.2:8037605-8037624 | MS.gene016080:intron | 25.0% |
! | TTTGTAGGTGTAAAAAGAAA+TGG | + | chr1.2:8037604-8037623 | MS.gene016080:intron | 25.0% |
! | TTTGTATGATCGTGTATAAT+TGG | + | chr1.2:8037293-8037312 | MS.gene016080:intron | 25.0% |
!! | AATTTTGCAAATTTTACAGC+CGG | + | chr1.2:8038979-8038998 | MS.gene016080:CDS | 25.0% |
!! | ACAGCGTTCATAAATATTTT+TGG | + | chr1.2:8039747-8039766 | MS.gene016080:intron | 25.0% |
!! | AGATTGAACATTTTCTGTTT+AGG | + | chr1.2:8039523-8039542 | MS.gene016080:intron | 25.0% |
!! | CAATGTCTAAAATTGCATAT+GGG | - | chr1.2:8038885-8038904 | None:intergenic | 25.0% |
!! | GTAATCAAATGTTAGGTTTT+AGG | + | chr1.2:8038410-8038429 | MS.gene016080:intron | 25.0% |
!! | GTTTAACTCTTCATTTCTTT+TGG | + | chr1.2:8037246-8037265 | MS.gene016080:intron | 25.0% |
!! | TCAATGTCTAAAATTGCATA+TGG | - | chr1.2:8038886-8038905 | None:intergenic | 25.0% |
!!! | AATCAAATGTTAGGTTTTAG+GGG | + | chr1.2:8038412-8038431 | MS.gene016080:intron | 25.0% |
!!! | ACTTTTTTGCTCAACAATAT+TGG | + | chr1.2:8039259-8039278 | MS.gene016080:CDS | 25.0% |
!!! | ATATTCCGCATTTTGAAATT+TGG | - | chr1.2:8039711-8039730 | None:intergenic | 25.0% |
!!! | GAGTTTGGTAATTTTTTAGT+TGG | + | chr1.2:8037966-8037985 | MS.gene016080:intron | 25.0% |
AGCAAAAAAGTTTGCAATAG+TGG | - | chr1.2:8039250-8039269 | None:intergenic | 30.0% | |
AGTTTCAGAATGACATCATA+TGG | + | chr1.2:8037501-8037520 | MS.gene016080:intron | 30.0% | |
ATTAAGATTAACAGCCAAAG+AGG | + | chr1.2:8037430-8037449 | MS.gene016080:intron | 30.0% | |
ATTTGGAAACGTTAAGAAGA+TGG | + | chr1.2:8037144-8037163 | MS.gene016080:CDS | 30.0% | |
CAAATCTAACCATTTCAACA+AGG | + | chr1.2:8038261-8038280 | MS.gene016080:intron | 30.0% | |
GTTTCAGAATGACATCATAT+GGG | + | chr1.2:8037502-8037521 | MS.gene016080:intron | 30.0% | |
TCAAATCGATATAACATGAC+CGG | - | chr1.2:8038471-8038490 | None:intergenic | 30.0% | |
TGAATGAAATGAAACTAACC+GGG | - | chr1.2:8037879-8037898 | None:intergenic | 30.0% | |
TGTTGAAACCTTGAAGTTTA+TGG | + | chr1.2:8037717-8037736 | MS.gene016080:CDS | 30.0% | |
TTCAATTTCACATTCCTCTT+TGG | - | chr1.2:8037447-8037466 | None:intergenic | 30.0% | |
TTTGGAAACGTTAAGAAGAT+GGG | + | chr1.2:8037145-8037164 | MS.gene016080:CDS | 30.0% | |
! | CCAAAAAACGACAATTTTAG+AGG | - | chr1.2:8039808-8039827 | None:intergenic | 30.0% |
! | TGCTAACGTTTTTCATTTAC+AGG | + | chr1.2:8038907-8038926 | MS.gene016080:intron | 30.0% |
! | TGTAAAGCGTTTAAACTTAC+AGG | + | chr1.2:8038788-8038807 | MS.gene016080:CDS | 30.0% |
! | TTTAGGGGTTTTACTATAGT+TGG | + | chr1.2:8038427-8038446 | MS.gene016080:intron | 30.0% |
! | TTTTTGCTCAACAATATTGG+TGG | + | chr1.2:8039262-8039281 | MS.gene016080:CDS | 30.0% |
!! | ACATTTTAAAAATGGGTTCC+AGG | - | chr1.2:8037320-8037339 | None:intergenic | 30.0% |
!! | GACGATTATCATGTTTTTGT+AGG | + | chr1.2:8037589-8037608 | MS.gene016080:intron | 30.0% |
!! | GTGATTTTATTTCTCCTTAC+TGG | + | chr1.2:8037561-8037580 | MS.gene016080:intron | 30.0% |
!!! | CCTCTAAAATTGTCGTTTTT+TGG | + | chr1.2:8039805-8039824 | MS.gene016080:intron | 30.0% |
!!! | TCTTTGATGTTTTCAAGTGT+AGG | - | chr1.2:8039016-8039035 | None:intergenic | 30.0% |
!!! | TTTTGGTTGTTTCTTTACAG+AGG | + | chr1.2:8039822-8039841 | MS.gene016080:intron | 30.0% |
AAACTTACTGTAGGATGGTA+TGG | + | chr1.2:8038117-8038136 | MS.gene016080:intron | 35.0% | |
AAGTTACTCAAGGACTATGT+TGG | - | chr1.2:8038363-8038382 | None:intergenic | 35.0% | |
ACCTTCTTCCATAAACTTCA+AGG | - | chr1.2:8037728-8037747 | None:intergenic | 35.0% | |
ACCTTGAAGTTTATGGAAGA+AGG | + | chr1.2:8037724-8037743 | MS.gene016080:CDS | 35.0% | |
ACTCAATGGTAACTTTCTTG+TGG | - | chr1.2:8039114-8039133 | None:intergenic | 35.0% | |
AGACATTAAAGAACTTCCTC+CGG | - | chr1.2:8039569-8039588 | None:intergenic | 35.0% | |
AGTTAGGAGAAACTTACTGT+AGG | + | chr1.2:8038108-8038127 | MS.gene016080:intron | 35.0% | |
ATGTCTGTAACTTTGGTGAA+AGG | + | chr1.2:8039583-8039602 | MS.gene016080:CDS | 35.0% | |
ATTAGGAGGATATTTCCCTT+GGG | - | chr1.2:8037679-8037698 | None:intergenic | 35.0% | |
ATTTGTTCAAACCCTAAGGT+TGG | + | chr1.2:8039196-8039215 | MS.gene016080:CDS | 35.0% | |
CAAACTTAGTACTGTCATCA+AGG | - | chr1.2:8038640-8038659 | None:intergenic | 35.0% | |
CGATCATCAATTACTCAATC+AGG | - | chr1.2:8039464-8039483 | None:intergenic | 35.0% | |
CTATTAGAGTTATCACAGCT+GGG | + | chr1.2:8038011-8038030 | MS.gene016080:intron | 35.0% | |
GGAAATGAAAACATTGAGAG+AGG | + | chr1.2:8037938-8037957 | MS.gene016080:intron | 35.0% | |
GGACTAACTAATTCTGTTAG+TGG | + | chr1.2:8038032-8038051 | MS.gene016080:intron | 35.0% | |
GTAGCTCAAGAATCAAGATT+TGG | - | chr1.2:8038547-8038566 | None:intergenic | 35.0% | |
TAGGGTTTGAACAAATTCCA+AGG | - | chr1.2:8039192-8039211 | None:intergenic | 35.0% | |
TATTGCTGATGCTTTGCAAT+GGG | + | chr1.2:8039081-8039100 | MS.gene016080:CDS | 35.0% | |
TCTAAACCACCATTGAGTTT+AGG | - | chr1.2:8039654-8039673 | None:intergenic | 35.0% | |
TCTATTAGAGTTATCACAGC+TGG | + | chr1.2:8038010-8038029 | MS.gene016080:intron | 35.0% | |
TGAAGTTTATGGAAGAAGGT+GGG | + | chr1.2:8037728-8037747 | MS.gene016080:CDS | 35.0% | |
TGTACAAACTAATATTGCCG+TGG | - | chr1.2:8039153-8039172 | None:intergenic | 35.0% | |
TTATTAGCAACATGCATTCC+TGG | + | chr1.2:8037641-8037660 | MS.gene016080:CDS | 35.0% | |
TTGAAGTTTATGGAAGAAGG+TGG | + | chr1.2:8037727-8037746 | MS.gene016080:CDS | 35.0% | |
TTGGAAACGTTAAGAAGATG+GGG | + | chr1.2:8037146-8037165 | MS.gene016080:CDS | 35.0% | |
TTGTTACAGACTTACAGTCA+TGG | - | chr1.2:8038244-8038263 | None:intergenic | 35.0% | |
TTTACAGAGGAAGACATTGT+AGG | + | chr1.2:8039835-8039854 | MS.gene016080:intron | 35.0% | |
TTTGGTGAAAGGTTTCTGAT+CGG | + | chr1.2:8039594-8039613 | MS.gene016080:CDS | 35.0% | |
TTTGTTCAAACCCTAAGGTT+GGG | + | chr1.2:8039197-8039216 | MS.gene016080:CDS | 35.0% | |
! | AAAACGTACATGGATTTTCC+TGG | - | chr1.2:8039304-8039323 | None:intergenic | 35.0% |
! | ATTGAAGGCATACACTGTAA+GGG | - | chr1.2:8038861-8038880 | None:intergenic | 35.0% |
! | CTCAAGAATCAAGATTTGGT+AGG | - | chr1.2:8038543-8038562 | None:intergenic | 35.0% |
! | GACTCTAAAAGGACTATGTT+AGG | - | chr1.2:8037829-8037848 | None:intergenic | 35.0% |
! | TGGAATTTGTTCAAACCCTA+AGG | + | chr1.2:8039192-8039211 | MS.gene016080:CDS | 35.0% |
!! | AAATTGCATATGGGCATTGA+AGG | - | chr1.2:8038876-8038895 | None:intergenic | 35.0% |
!! | ATAAGCATTTGTTGTGCCAA+GGG | + | chr1.2:8038830-8038849 | MS.gene016080:intron | 35.0% |
!! | TTGAGTTTGCTGAAATTCTC+CGG | + | chr1.2:8039547-8039566 | MS.gene016080:CDS | 35.0% |
!!! | AACATAGTCCTTTTAGAGTC+CGG | + | chr1.2:8037829-8037848 | MS.gene016080:CDS | 35.0% |
!!! | ACCGTCTCTATGATTTTTTG+CGG | + | chr1.2:8038503-8038522 | MS.gene016080:intron | 35.0% |
AAACTAATATTGCCGTGGCT+TGG | - | chr1.2:8039148-8039167 | None:intergenic | 40.0% | |
AACCGGGTTTCGATAGTATA+TGG | - | chr1.2:8037863-8037882 | None:intergenic | 40.0% | |
AACTCAATGGTGGTTTAGAG+TGG | + | chr1.2:8039655-8039674 | MS.gene016080:CDS | 40.0% | |
ACCGGGTTTCGATAGTATAT+GGG | - | chr1.2:8037862-8037881 | None:intergenic | 40.0% | |
AGGAGAAACTTACTGTAGGA+TGG | + | chr1.2:8038112-8038131 | MS.gene016080:intron | 40.0% | |
AGTGTAGGAAATACATGCTC+CGG | - | chr1.2:8039001-8039020 | None:intergenic | 40.0% | |
ATAATCGTCAGTAGCCAGTA+AGG | - | chr1.2:8037578-8037597 | None:intergenic | 40.0% | |
ATAGTATATGGGAGAACTGC+CGG | - | chr1.2:8037851-8037870 | None:intergenic | 40.0% | |
ATGCTGAAGCCTAAACTCAA+TGG | + | chr1.2:8039642-8039661 | MS.gene016080:CDS | 40.0% | |
CAATATTGGTCCCAACCTTA+GGG | - | chr1.2:8039210-8039229 | None:intergenic | 40.0% | |
GATTAGGAGGATATTTCCCT+TGG | - | chr1.2:8037680-8037699 | None:intergenic | 40.0% | |
GCCGCAAAAAATCATAGAGA+CGG | - | chr1.2:8038507-8038526 | None:intergenic | 40.0% | |
GGGCTCCAAATTTCAAAATG+CGG | + | chr1.2:8039703-8039722 | MS.gene016080:CDS | 40.0% | |
GGTTTGAACAAATTCCAAGG+TGG | - | chr1.2:8039189-8039208 | None:intergenic | 40.0% | |
GTATTGCTGATGCTTTGCAA+TGG | + | chr1.2:8039080-8039099 | MS.gene016080:CDS | 40.0% | |
GTTTCCTTCTTCAAGAGAGA+AGG | - | chr1.2:8038169-8038188 | None:intergenic | 40.0% | |
TACTGTAGGATGGTATGGTA+TGG | + | chr1.2:8038122-8038141 | MS.gene016080:intron | 40.0% | |
TCAAACCCAAAGGAGAGATT+GGG | + | chr1.2:8038935-8038954 | MS.gene016080:CDS | 40.0% | |
TCAATATTGGTCCCAACCTT+AGG | - | chr1.2:8039211-8039230 | None:intergenic | 40.0% | |
TCAGAACTGCTGATGGAATA+CGG | + | chr1.2:8037784-8037803 | MS.gene016080:CDS | 40.0% | |
TCATAGCTTCTTAGCTGTGT+AGG | - | chr1.2:8037049-8037068 | None:intergenic | 40.0% | |
TCCCATATACTATCGAAACC+CGG | + | chr1.2:8037858-8037877 | MS.gene016080:CDS | 40.0% | |
TGATCGTGTATAATTGGTCC+TGG | + | chr1.2:8037299-8037318 | MS.gene016080:intron | 40.0% | |
TGGAAACGTTAAGAAGATGG+GGG | + | chr1.2:8037147-8037166 | MS.gene016080:CDS | 40.0% | |
TTGAGAGAGGTAGTAGAGTT+TGG | + | chr1.2:8037951-8037970 | MS.gene016080:intron | 40.0% | |
TTGCTCAACAATATTGGTGG+AGG | + | chr1.2:8039265-8039284 | MS.gene016080:CDS | 40.0% | |
! | AATGGTGGTTTAGAGTGGAT+GGG | + | chr1.2:8039660-8039679 | MS.gene016080:CDS | 40.0% |
! | CATTGAAGGCATACACTGTA+AGG | - | chr1.2:8038862-8038881 | None:intergenic | 40.0% |
! | CTTGTACTCGTACTGGTAAA+AGG | - | chr1.2:8038750-8038769 | None:intergenic | 40.0% |
! | CTTTTACCAGTACGAGTACA+AGG | + | chr1.2:8038748-8038767 | MS.gene016080:CDS | 40.0% |
! | GAATCAAGATTTGGTAGGAG+AGG | - | chr1.2:8038538-8038557 | None:intergenic | 40.0% |
! | TGGAATACGGACAAGTATTG+TGG | + | chr1.2:8037797-8037816 | MS.gene016080:CDS | 40.0% |
!! | GATAAGCATTTGTTGTGCCA+AGG | + | chr1.2:8038829-8038848 | MS.gene016080:intron | 40.0% |
AATCACTATCACCCGCGATT+AGG | - | chr1.2:8037696-8037715 | None:intergenic | 45.0% | |
ACAGGATGAGTCAAACCCAA+AGG | + | chr1.2:8038925-8038944 | MS.gene016080:intron | 45.0% | |
ATCAGTGCTTCTCTTCGACT+AGG | + | chr1.2:8037085-8037104 | MS.gene016080:CDS | 45.0% | |
CAAACAATACTAACCTCCGC+CGG | - | chr1.2:8037227-8037246 | None:intergenic | 45.0% | |
CTGAAGCCTAAACTCAATGG+TGG | + | chr1.2:8039645-8039664 | MS.gene016080:CDS | 45.0% | |
GACCGGAAAAGATACAGCTT+GGG | - | chr1.2:8038454-8038473 | None:intergenic | 45.0% | |
GACTTGATTGATGCACCTTC+CGG | + | chr1.2:8037205-8037224 | MS.gene016080:CDS | 45.0% | |
GCTTCTTAGCTGTGTAGGAA+TGG | - | chr1.2:8037044-8037063 | None:intergenic | 45.0% | |
GGAAATATCCTCCTAATCGC+GGG | + | chr1.2:8037682-8037701 | MS.gene016080:CDS | 45.0% | |
GGGAAATATCCTCCTAATCG+CGG | + | chr1.2:8037681-8037700 | MS.gene016080:CDS | 45.0% | |
GGTAGACAAGATCGTGTTTC+AGG | - | chr1.2:8038619-8038638 | None:intergenic | 45.0% | |
GTATTCCATCAGCAGTTCTG+AGG | - | chr1.2:8037785-8037804 | None:intergenic | 45.0% | |
GTCAAACCCAAAGGAGAGAT+TGG | + | chr1.2:8038934-8038953 | MS.gene016080:CDS | 45.0% | |
GTTTAGGCTTCAGCATGACA+TGG | - | chr1.2:8039638-8039657 | None:intergenic | 45.0% | |
TATGGTATGGTATAGCCTGG+AGG | + | chr1.2:8038135-8038154 | MS.gene016080:intron | 45.0% | |
TGACCGGAAAAGATACAGCT+TGG | - | chr1.2:8038455-8038474 | None:intergenic | 45.0% | |
TGGAACTCGAGTACACTCAA+TGG | - | chr1.2:8039128-8039147 | None:intergenic | 45.0% | |
TGGTATGGTATGGTATAGCC+TGG | + | chr1.2:8038132-8038151 | MS.gene016080:intron | 45.0% | |
TGTGCCTTCTCTCTTGAAGA+AGG | + | chr1.2:8038162-8038181 | MS.gene016080:intron | 45.0% | |
TTCACAATGTAGCAACCCCT+TGG | - | chr1.2:8038579-8038598 | None:intergenic | 45.0% | |
! | ACGGACAAGTATTGTGGAAC+TGG | + | chr1.2:8037803-8037822 | MS.gene016080:CDS | 45.0% |
! | CAATGGTGGTTTAGAGTGGA+TGG | + | chr1.2:8039659-8039678 | MS.gene016080:CDS | 45.0% |
! | CGTACTGGTAAAAGGCTACA+AGG | - | chr1.2:8038742-8038761 | None:intergenic | 45.0% |
! | GACCCAAGCTGTATCTTTTC+CGG | + | chr1.2:8038449-8038468 | MS.gene016080:intron | 45.0% |
!! | AGTTTGCTGAAATTCTCCGG+AGG | + | chr1.2:8039550-8039569 | MS.gene016080:CDS | 45.0% |
AGATGGGGGATGATGTTCGA+AGG | + | chr1.2:8037161-8037180 | MS.gene016080:CDS | 50.0% | |
AGTGCTTCTCTTCGACTAGG+CGG | + | chr1.2:8037088-8037107 | MS.gene016080:CDS | 50.0% | |
ATGGGACCCAATCTCTCCTT+TGG | - | chr1.2:8038944-8038963 | None:intergenic | 50.0% | |
CACTGTAAGGGTTTGACCCT+TGG | - | chr1.2:8038849-8038868 | None:intergenic | 50.0% | |
CGAAGGCAATTCAAAGCTGC+AGG | + | chr1.2:8037178-8037197 | MS.gene016080:CDS | 50.0% | |
CGCAAACCTTGTACTCGTAC+TGG | - | chr1.2:8038757-8038776 | None:intergenic | 50.0% | |
CTAGGCGGTATAGGAGTAGA+AGG | + | chr1.2:8037103-8037122 | MS.gene016080:CDS | 50.0% | |
CTCGTGCTGAACTCAATTCC+AGG | + | chr1.2:8039047-8039066 | MS.gene016080:CDS | 50.0% | |
GAGAACTGCCGGACTCTAAA+AGG | - | chr1.2:8037840-8037859 | None:intergenic | 50.0% | |
GGAGGAAATCGATTAGAGCC+AGG | + | chr1.2:8039283-8039302 | MS.gene016080:CDS | 50.0% | |
GGCATAAAGTCATGATCGCC+GGG | + | chr1.2:8037749-8037768 | MS.gene016080:CDS | 50.0% | |
GGGCATAAAGTCATGATCGC+CGG | + | chr1.2:8037748-8037767 | MS.gene016080:CDS | 50.0% | |
TAACCGTCGTGCTGAGGAAT+GGG | + | chr1.2:8039683-8039702 | MS.gene016080:CDS | 50.0% | |
TCTCTTCGACTAGGCGGTAT+AGG | + | chr1.2:8037094-8037113 | MS.gene016080:CDS | 50.0% | |
TGGGACCCAATCTCTCCTTT+GGG | - | chr1.2:8038943-8038962 | None:intergenic | 50.0% | |
TGGTCGCGTGAAAATCCCAA+GGG | + | chr1.2:8037661-8037680 | MS.gene016080:CDS | 50.0% | |
TGTACTCGAGTTCCAAGCCA+CGG | + | chr1.2:8039133-8039152 | MS.gene016080:CDS | 50.0% | |
TTGATTGATGCACCTTCCGG+CGG | + | chr1.2:8037208-8037227 | MS.gene016080:CDS | 50.0% | |
! | AGATTAGCTGACAGCCACCT+TGG | + | chr1.2:8039172-8039191 | MS.gene016080:CDS | 50.0% |
!! | GGACTCACTGTGAGAGCATT+TGG | + | chr1.2:8037127-8037146 | MS.gene016080:CDS | 50.0% |
!! | TGAGGCGAGCCTTGTTGAAA+TGG | - | chr1.2:8038273-8038292 | None:intergenic | 50.0% |
AAGTCATGATCGCCGGGAAG+TGG | + | chr1.2:8037755-8037774 | MS.gene016080:CDS | 55.0% | |
AGTCATGATCGCCGGGAAGT+GGG | + | chr1.2:8037756-8037775 | MS.gene016080:CDS | 55.0% | |
CAATACTAACCTCCGCCGGA+AGG | - | chr1.2:8037223-8037242 | None:intergenic | 55.0% | |
CACTATCACCCGCGATTAGG+AGG | - | chr1.2:8037693-8037712 | None:intergenic | 55.0% | |
CTCGACATCCCAGAATACGC+CGG | - | chr1.2:8037014-8037033 | None:intergenic | 55.0% | |
CTGGTCGCGTGAAAATCCCA+AGG | + | chr1.2:8037660-8037679 | MS.gene016080:CDS | 55.0% | |
GGATGCCTCAGAACTGCTGA+TGG | + | chr1.2:8037777-8037796 | MS.gene016080:CDS | 55.0% | |
GGCGGTATAGGAGTAGAAGG+TGG | + | chr1.2:8037106-8037125 | MS.gene016080:CDS | 55.0% | |
GTAACCGTCGTGCTGAGGAA+TGG | + | chr1.2:8039682-8039701 | MS.gene016080:CDS | 55.0% | |
! | CTTGGGATTTTCACGCGACC+AGG | - | chr1.2:8037662-8037681 | None:intergenic | 55.0% |
!! | TTCTGAGGCATCCCACTTCC+CGG | - | chr1.2:8037770-8037789 | None:intergenic | 55.0% |
AGCTACACGAGCTCGCCAAG+GGG | + | chr1.2:8038561-8038580 | MS.gene016080:intron | 60.0% | |
ATTGATGCACCTTCCGGCGG+AGG | + | chr1.2:8037211-8037230 | MS.gene016080:CDS | 60.0% | |
GACATCCCAGAATACGCCGG+TGG | - | chr1.2:8037011-8037030 | None:intergenic | 60.0% | |
GAGCCCATTCCTCAGCACGA+CGG | - | chr1.2:8039689-8039708 | None:intergenic | 60.0% | |
GAGCTACACGAGCTCGCCAA+GGG | + | chr1.2:8038560-8038579 | MS.gene016080:intron | 60.0% | |
GATGGGTAACCGTCGTGCTG+AGG | + | chr1.2:8039677-8039696 | MS.gene016080:CDS | 60.0% | |
GGTGTCCACCGGCGTATTCT+GGG | + | chr1.2:8037003-8037022 | MS.gene016080:CDS | 60.0% | |
TGAGCTACACGAGCTCGCCA+AGG | + | chr1.2:8038559-8038578 | MS.gene016080:intron | 60.0% | |
TGGTGTCCACCGGCGTATTC+TGG | + | chr1.2:8037002-8037021 | MS.gene016080:CDS | 60.0% | |
! | GAGAAGGCACAGACACCTCC+AGG | - | chr1.2:8038153-8038172 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 8037001 | 8039876 | 8037001 | ID=MS.gene016080 |
chr1.2 | mRNA | 8037001 | 8039876 | 8037001 | ID=MS.gene016080.t1;Parent=MS.gene016080 |
chr1.2 | exon | 8037001 | 8037232 | 8037001 | ID=MS.gene016080.t1.exon1;Parent=MS.gene016080.t1 |
chr1.2 | CDS | 8037001 | 8037232 | 8037001 | ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1 |
chr1.2 | exon | 8037611 | 8037879 | 8037611 | ID=MS.gene016080.t1.exon2;Parent=MS.gene016080.t1 |
chr1.2 | CDS | 8037611 | 8037879 | 8037611 | ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1 |
chr1.2 | exon | 8038747 | 8038809 | 8038747 | ID=MS.gene016080.t1.exon3;Parent=MS.gene016080.t1 |
chr1.2 | CDS | 8038747 | 8038809 | 8038747 | ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1 |
chr1.2 | exon | 8038929 | 8039314 | 8038929 | ID=MS.gene016080.t1.exon4;Parent=MS.gene016080.t1 |
chr1.2 | CDS | 8038929 | 8039314 | 8038929 | ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1 |
chr1.2 | exon | 8039545 | 8039744 | 8039545 | ID=MS.gene016080.t1.exon5;Parent=MS.gene016080.t1 |
chr1.2 | CDS | 8039545 | 8039744 | 8039545 | ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1 |
chr1.2 | exon | 8039842 | 8039876 | 8039842 | ID=MS.gene016080.t1.exon6;Parent=MS.gene016080.t1 |
chr1.2 | CDS | 8039842 | 8039876 | 8039842 | ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1 |
Gene Sequence |
Protein sequence |