AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016080.t1 MTR_7g110390 26.000 150 105 3 5 153 14 158 7.29e-17 82.4
MS.gene016080.t1 MTR_3g095410 26.786 168 115 5 2 168 55 215 5.09e-14 74.3
MS.gene016080.t1 MTR_3g050240 25.786 159 106 4 5 162 175 322 8.47e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016080.t1 AT5G09840 26.820 261 156 11 2 240 71 318 1.91e-17 85.1
MS.gene016080.t1 AT3G62210 26.380 163 110 5 1 162 21 174 3.77e-15 75.5
MS.gene016080.t1 AT3G62200 26.250 160 108 4 4 162 30 180 1.48e-13 72.8
MS.gene016080.t1 AT3G62050 29.752 121 70 5 4 121 14 122 2.81e-11 62.0

Find 105 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCGAATAACAACATTTA+TGG 0.129146 1.2:-8038960 None:intergenic
TGTTGAAACCTTGAAGTTTA+TGG 0.131106 1.2:+8037717 MS.gene016080:CDS
TGTAAAGCGTTTAAACTTAC+AGG 0.197901 1.2:+8038788 MS.gene016080:CDS
TGGTGTCCACCGGCGTATTC+TGG 0.214087 1.2:+8037002 MS.gene016080:CDS
ATGGGACCCAATCTCTCCTT+TGG 0.269593 1.2:-8038941 None:intergenic
AACCGGGTTTCGATAGTATA+TGG 0.277742 1.2:-8037860 None:intergenic
TTCTTTAATGTCTGTAACTT+TGG 0.293926 1.2:+8039576 MS.gene016080:CDS
ATTCGAATAACAACATTTAT+GGG 0.319102 1.2:-8038959 None:intergenic
GAGAACTGCCGGACTCTAAA+AGG 0.325854 1.2:-8037837 None:intergenic
AGCAATACTTATATTATTCC+TGG 0.335011 1.2:-8039065 None:intergenic
TTCTGAGGCATCCCACTTCC+CGG 0.343788 1.2:-8037767 None:intergenic
GGACTCACTGTGAGAGCATT+TGG 0.344271 1.2:+8037127 MS.gene016080:CDS
TCAATATTGGTCCCAACCTT+AGG 0.345166 1.2:-8039208 None:intergenic
CTTGTACTCGTACTGGTAAA+AGG 0.346241 1.2:-8038747 None:intergenic
ACCTTCTTCCATAAACTTCA+AGG 0.372927 1.2:-8037725 None:intergenic
TGGGACCCAATCTCTCCTTT+GGG 0.373712 1.2:-8038940 None:intergenic
TTATTAGCAACATGCATTCC+TGG 0.376131 1.2:+8037641 MS.gene016080:CDS
CGGAATATTAGAAAATATAA+AGG 0.388369 1.2:+8039723 MS.gene016080:CDS
CTCGTGCTGAACTCAATTCC+AGG 0.394340 1.2:+8039047 MS.gene016080:CDS
CACTTCTATATAATCAATAT+TGG 0.395917 1.2:-8039221 None:intergenic
GACTTGATTGATGCACCTTC+CGG 0.397470 1.2:+8037205 MS.gene016080:CDS
GGTGTCCACCGGCGTATTCT+GGG 0.404162 1.2:+8037003 MS.gene016080:CDS
TCTCTTCGACTAGGCGGTAT+AGG 0.405051 1.2:+8037094 MS.gene016080:CDS
CAATATTGGTCCCAACCTTA+GGG 0.414014 1.2:-8039207 None:intergenic
GTCAAACCCAAAGGAGAGAT+TGG 0.419092 1.2:+8038934 MS.gene016080:CDS
AATCACTATCACCCGCGATT+AGG 0.434677 1.2:-8037693 None:intergenic
TTTACAGAGGAAGACATTGT+AGG 0.440045 1.2:+8039835 MS.gene016080:intron
GACTCTAAAAGGACTATGTT+AGG 0.442516 1.2:-8037826 None:intergenic
ACGGACAAGTATTGTGGAAC+TGG 0.443416 1.2:+8037803 MS.gene016080:CDS
TTTGTTCAAACCCTAAGGTT+GGG 0.454926 1.2:+8039197 MS.gene016080:CDS
TCTAAACCACCATTGAGTTT+AGG 0.456749 1.2:-8039651 None:intergenic
CTAGGCGGTATAGGAGTAGA+AGG 0.461409 1.2:+8037103 MS.gene016080:CDS
TAACCGTCGTGCTGAGGAAT+GGG 0.462670 1.2:+8039683 MS.gene016080:CDS
CAATGGTGGTTTAGAGTGGA+TGG 0.462773 1.2:+8039659 MS.gene016080:CDS
ATTTGGAAACGTTAAGAAGA+TGG 0.466034 1.2:+8037144 MS.gene016080:CDS
TGGAATTTGTTCAAACCCTA+AGG 0.466799 1.2:+8039192 MS.gene016080:CDS
ACCTTGAAGTTTATGGAAGA+AGG 0.468779 1.2:+8037724 MS.gene016080:CDS
TTGAGTTTGCTGAAATTCTC+CGG 0.469079 1.2:+8039547 MS.gene016080:CDS
AAGTCATGATCGCCGGGAAG+TGG 0.469652 1.2:+8037755 MS.gene016080:CDS
ATTGATGCACCTTCCGGCGG+AGG 0.472148 1.2:+8037211 MS.gene016080:CDS
GATTAGGAGGATATTTCCCT+TGG 0.476900 1.2:-8037677 None:intergenic
CGCAAACCTTGTACTCGTAC+TGG 0.478424 1.2:-8038754 None:intergenic
AAACTAATATTGCCGTGGCT+TGG 0.492637 1.2:-8039145 None:intergenic
CGAAGGCAATTCAAAGCTGC+AGG 0.493964 1.2:+8037178 MS.gene016080:CDS
TTGCTCAACAATATTGGTGG+AGG 0.495372 1.2:+8039265 MS.gene016080:CDS
ATGTCTGTAACTTTGGTGAA+AGG 0.498599 1.2:+8039583 MS.gene016080:CDS
ATTTGTTCAAACCCTAAGGT+TGG 0.500980 1.2:+8039196 MS.gene016080:CDS
TTTGGAAACGTTAAGAAGAT+GGG 0.502661 1.2:+8037145 MS.gene016080:CDS
TCAGAACTGCTGATGGAATA+CGG 0.510494 1.2:+8037784 MS.gene016080:CDS
CACTATCACCCGCGATTAGG+AGG 0.515264 1.2:-8037690 None:intergenic
GCTTCTTAGCTGTGTAGGAA+TGG 0.518991 1.2:-8037041 None:intergenic
AGTGTAGGAAATACATGCTC+CGG 0.521068 1.2:-8038998 None:intergenic
GGCATAAAGTCATGATCGCC+GGG 0.521161 1.2:+8037749 MS.gene016080:CDS
TCAAACCCAAAGGAGAGATT+GGG 0.524842 1.2:+8038935 MS.gene016080:CDS
ACCGGGTTTCGATAGTATAT+GGG 0.527100 1.2:-8037859 None:intergenic
ATAGTATATGGGAGAACTGC+CGG 0.528774 1.2:-8037848 None:intergenic
GGATGCCTCAGAACTGCTGA+TGG 0.536396 1.2:+8037777 MS.gene016080:CDS
GTAACCGTCGTGCTGAGGAA+TGG 0.536553 1.2:+8039682 MS.gene016080:CDS
ATTAGGAGGATATTTCCCTT+GGG 0.539334 1.2:-8037676 None:intergenic
TATTGCTGATGCTTTGCAAT+GGG 0.540134 1.2:+8039081 MS.gene016080:CDS
TCATAGCTTCTTAGCTGTGT+AGG 0.543817 1.2:-8037046 None:intergenic
GGGCATAAAGTCATGATCGC+CGG 0.545017 1.2:+8037748 MS.gene016080:CDS
AGATTAGCTGACAGCCACCT+TGG 0.547787 1.2:+8039172 MS.gene016080:CDS
AGACATTAAAGAACTTCCTC+CGG 0.549304 1.2:-8039566 None:intergenic
GGAGGAAATCGATTAGAGCC+AGG 0.557630 1.2:+8039283 MS.gene016080:CDS
GGAAATATCCTCCTAATCGC+GGG 0.561694 1.2:+8037682 MS.gene016080:CDS
AACTCAATGGTGGTTTAGAG+TGG 0.565618 1.2:+8039655 MS.gene016080:CDS
GTTTAGGCTTCAGCATGACA+TGG 0.572400 1.2:-8039635 None:intergenic
AGTCATGATCGCCGGGAAGT+GGG 0.573165 1.2:+8037756 MS.gene016080:CDS
TTGAAGTTTATGGAAGAAGG+TGG 0.579140 1.2:+8037727 MS.gene016080:CDS
TGGAATACGGACAAGTATTG+TGG 0.593268 1.2:+8037797 MS.gene016080:CDS
TTTGGTGAAAGGTTTCTGAT+CGG 0.594767 1.2:+8039594 MS.gene016080:CDS
ACTCAATGGTAACTTTCTTG+TGG 0.596798 1.2:-8039111 None:intergenic
ATGCTGAAGCCTAAACTCAA+TGG 0.597722 1.2:+8039642 MS.gene016080:CDS
TTGATTGATGCACCTTCCGG+CGG 0.599582 1.2:+8037208 MS.gene016080:CDS
TAGGGTTTGAACAAATTCCA+AGG 0.603209 1.2:-8039189 None:intergenic
TTGGAAACGTTAAGAAGATG+GGG 0.604383 1.2:+8037146 MS.gene016080:CDS
CAATACTAACCTCCGCCGGA+AGG 0.607198 1.2:-8037220 None:intergenic
GGGAAATATCCTCCTAATCG+CGG 0.607421 1.2:+8037681 MS.gene016080:CDS
GATGGGTAACCGTCGTGCTG+AGG 0.615512 1.2:+8039677 MS.gene016080:CDS
TGGAACTCGAGTACACTCAA+TGG 0.616193 1.2:-8039125 None:intergenic
TGAAGTTTATGGAAGAAGGT+GGG 0.621230 1.2:+8037728 MS.gene016080:CDS
CTGAAGCCTAAACTCAATGG+TGG 0.628478 1.2:+8039645 MS.gene016080:CDS
TGTACAAACTAATATTGCCG+TGG 0.637325 1.2:-8039150 None:intergenic
CTGGTCGCGTGAAAATCCCA+AGG 0.638364 1.2:+8037660 MS.gene016080:CDS
GGGCTCCAAATTTCAAAATG+CGG 0.638600 1.2:+8039703 MS.gene016080:CDS
ACAATCATAATGGTGTCCAC+CGG 0.640527 1.2:+8036992 None:intergenic
GTATTCCATCAGCAGTTCTG+AGG 0.642202 1.2:-8037782 None:intergenic
GTATTGCTGATGCTTTGCAA+TGG 0.642280 1.2:+8039080 MS.gene016080:CDS
ATCAGTGCTTCTCTTCGACT+AGG 0.644770 1.2:+8037085 MS.gene016080:CDS
AATGGTGGTTTAGAGTGGAT+GGG 0.650032 1.2:+8039660 MS.gene016080:CDS
CAAACAATACTAACCTCCGC+CGG 0.657717 1.2:-8037224 None:intergenic
ACAGGATGAGTCAAACCCAA+AGG 0.659275 1.2:+8038925 MS.gene016080:intron
TGTACTCGAGTTCCAAGCCA+CGG 0.661299 1.2:+8039133 MS.gene016080:CDS
TCCCATATACTATCGAAACC+CGG 0.668326 1.2:+8037858 MS.gene016080:CDS
TGGAAACGTTAAGAAGATGG+GGG 0.675969 1.2:+8037147 MS.gene016080:CDS
ATATTGATTATATAGAAGTG+TGG 0.680795 1.2:+8039224 MS.gene016080:CDS
GAGCCCATTCCTCAGCACGA+CGG 0.681884 1.2:-8039686 None:intergenic
AGTGCTTCTCTTCGACTAGG+CGG 0.682637 1.2:+8037088 MS.gene016080:CDS
GGCGGTATAGGAGTAGAAGG+TGG 0.691425 1.2:+8037106 MS.gene016080:CDS
TGGTCGCGTGAAAATCCCAA+GGG 0.691802 1.2:+8037661 MS.gene016080:CDS
GACATCCCAGAATACGCCGG+TGG 0.704952 1.2:-8037008 None:intergenic
CTCGACATCCCAGAATACGC+CGG 0.705331 1.2:-8037011 None:intergenic
GGTTTGAACAAATTCCAAGG+TGG 0.708113 1.2:-8039186 None:intergenic
AGTTTGCTGAAATTCTCCGG+AGG 0.726467 1.2:+8039550 MS.gene016080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAAAACATTTTAAAAAT+GGG - chr1.2:8037327-8037346 None:intergenic 10.0%
!! TAAAATTGTAATCAAATGTT+AGG + chr1.2:8038403-8038422 MS.gene016080:intron 15.0%
!!! AAAAGTGTTCTTATTTATAT+TGG - chr1.2:8038669-8038688 None:intergenic 15.0%
!!! AAAGTGTTCTTATTTATATT+GGG - chr1.2:8038668-8038687 None:intergenic 15.0%
!!! CAAAGAAAACATTTTAAAAA+TGG - chr1.2:8037328-8037347 None:intergenic 15.0%
!! AAATGCTTATCAGAATATAA+AGG - chr1.2:8038820-8038839 None:intergenic 20.0%
!! AATGCTTATCAGAATATAAA+GGG - chr1.2:8038819-8038838 None:intergenic 20.0%
!! AATGTTATACTTCTATTGTT+AGG - chr1.2:8038208-8038227 None:intergenic 20.0%
!! AATTATAATTAGACTTTGGA+GGG + chr1.2:8038059-8038078 MS.gene016080:intron 20.0%
!! AATTCGAATAACAACATTTA+TGG - chr1.2:8038963-8038982 None:intergenic 20.0%
!! ACAGAATTATAATTAGACTT+TGG + chr1.2:8038055-8038074 MS.gene016080:intron 20.0%
!! ATCATACAAAAAAACTATTC+TGG - chr1.2:8037283-8037302 None:intergenic 20.0%
!! ATGAAAATAAAAAACGTACA+TGG - chr1.2:8039314-8039333 None:intergenic 20.0%
!! ATTCGAATAACAACATTTAT+GGG - chr1.2:8038962-8038981 None:intergenic 20.0%
!! CACTTCTATATAATCAATAT+TGG - chr1.2:8039224-8039243 None:intergenic 20.0%
!! CGGAATATTAGAAAATATAA+AGG + chr1.2:8039723-8039742 MS.gene016080:CDS 20.0%
!! GAATAATTTGATATGATGAT+TGG + chr1.2:8039483-8039502 MS.gene016080:intron 20.0%
!! TCATAAATTAAAGTTACTCA+AGG - chr1.2:8038373-8038392 None:intergenic 20.0%
!! TCATACAAAAAAACTATTCT+GGG - chr1.2:8037282-8037301 None:intergenic 20.0%
!! TGAAATTGAAATTATTGATG+AGG + chr1.2:8037457-8037476 MS.gene016080:intron 20.0%
!! TTACATTATCAAATGTTATC+AGG + chr1.2:8038688-8038707 MS.gene016080:intron 20.0%
!! TTCAATTAAATATTGCAGTT+AGG + chr1.2:8038092-8038111 MS.gene016080:intron 20.0%
!!! AAGTGTTCTTATTTATATTG+GGG - chr1.2:8038667-8038686 None:intergenic 20.0%
!!! AGTTTGGTAATTTTTTAGTT+GGG + chr1.2:8037967-8037986 MS.gene016080:intron 20.0%
!!! ATATTGATTATATAGAAGTG+TGG + chr1.2:8039224-8039243 MS.gene016080:CDS 20.0%
!!! ATGTTTTCATTTCCAAAAAT+AGG - chr1.2:8037932-8037951 None:intergenic 20.0%
!!! TAATCAAATGTTAGGTTTTA+GGG + chr1.2:8038411-8038430 MS.gene016080:intron 20.0%
!!! TGATTTAACATTCCTATTTT+TGG + chr1.2:8037917-8037936 MS.gene016080:intron 20.0%
!!! TTGAGTAACTTTAATTTATG+AGG + chr1.2:8038372-8038391 MS.gene016080:intron 20.0%
!!! TTGTTGAATAATTTTACATG+AGG - chr1.2:8038291-8038310 None:intergenic 20.0%
! AGCAATACTTATATTATTCC+TGG - chr1.2:8039068-8039087 None:intergenic 25.0%
! GAATTATAATTAGACTTTGG+AGG + chr1.2:8038058-8038077 MS.gene016080:intron 25.0%
! TCGATAATAAATCATTGAAC+TGG - chr1.2:8039363-8039382 None:intergenic 25.0%
! TGCAATATTTAATTGAAGAG+CGG - chr1.2:8038089-8038108 None:intergenic 25.0%
! TTCTTTAATGTCTGTAACTT+TGG + chr1.2:8039576-8039595 MS.gene016080:CDS 25.0%
! TTGAATGAAATGAAACTAAC+CGG - chr1.2:8037880-8037899 None:intergenic 25.0%
! TTGGAAGTAAAAACATATAG+AGG - chr1.2:8038344-8038363 None:intergenic 25.0%
! TTGTAGGTGTAAAAAGAAAT+GGG + chr1.2:8037605-8037624 MS.gene016080:intron 25.0%
! TTTGTAGGTGTAAAAAGAAA+TGG + chr1.2:8037604-8037623 MS.gene016080:intron 25.0%
! TTTGTATGATCGTGTATAAT+TGG + chr1.2:8037293-8037312 MS.gene016080:intron 25.0%
!! AATTTTGCAAATTTTACAGC+CGG + chr1.2:8038979-8038998 MS.gene016080:CDS 25.0%
!! ACAGCGTTCATAAATATTTT+TGG + chr1.2:8039747-8039766 MS.gene016080:intron 25.0%
!! AGATTGAACATTTTCTGTTT+AGG + chr1.2:8039523-8039542 MS.gene016080:intron 25.0%
!! CAATGTCTAAAATTGCATAT+GGG - chr1.2:8038885-8038904 None:intergenic 25.0%
!! GTAATCAAATGTTAGGTTTT+AGG + chr1.2:8038410-8038429 MS.gene016080:intron 25.0%
!! GTTTAACTCTTCATTTCTTT+TGG + chr1.2:8037246-8037265 MS.gene016080:intron 25.0%
!! TCAATGTCTAAAATTGCATA+TGG - chr1.2:8038886-8038905 None:intergenic 25.0%
!!! AATCAAATGTTAGGTTTTAG+GGG + chr1.2:8038412-8038431 MS.gene016080:intron 25.0%
!!! ACTTTTTTGCTCAACAATAT+TGG + chr1.2:8039259-8039278 MS.gene016080:CDS 25.0%
!!! ATATTCCGCATTTTGAAATT+TGG - chr1.2:8039711-8039730 None:intergenic 25.0%
!!! GAGTTTGGTAATTTTTTAGT+TGG + chr1.2:8037966-8037985 MS.gene016080:intron 25.0%
AGCAAAAAAGTTTGCAATAG+TGG - chr1.2:8039250-8039269 None:intergenic 30.0%
AGTTTCAGAATGACATCATA+TGG + chr1.2:8037501-8037520 MS.gene016080:intron 30.0%
ATTAAGATTAACAGCCAAAG+AGG + chr1.2:8037430-8037449 MS.gene016080:intron 30.0%
ATTTGGAAACGTTAAGAAGA+TGG + chr1.2:8037144-8037163 MS.gene016080:CDS 30.0%
CAAATCTAACCATTTCAACA+AGG + chr1.2:8038261-8038280 MS.gene016080:intron 30.0%
GTTTCAGAATGACATCATAT+GGG + chr1.2:8037502-8037521 MS.gene016080:intron 30.0%
TCAAATCGATATAACATGAC+CGG - chr1.2:8038471-8038490 None:intergenic 30.0%
TGAATGAAATGAAACTAACC+GGG - chr1.2:8037879-8037898 None:intergenic 30.0%
TGTTGAAACCTTGAAGTTTA+TGG + chr1.2:8037717-8037736 MS.gene016080:CDS 30.0%
TTCAATTTCACATTCCTCTT+TGG - chr1.2:8037447-8037466 None:intergenic 30.0%
TTTGGAAACGTTAAGAAGAT+GGG + chr1.2:8037145-8037164 MS.gene016080:CDS 30.0%
! CCAAAAAACGACAATTTTAG+AGG - chr1.2:8039808-8039827 None:intergenic 30.0%
! TGCTAACGTTTTTCATTTAC+AGG + chr1.2:8038907-8038926 MS.gene016080:intron 30.0%
! TGTAAAGCGTTTAAACTTAC+AGG + chr1.2:8038788-8038807 MS.gene016080:CDS 30.0%
! TTTAGGGGTTTTACTATAGT+TGG + chr1.2:8038427-8038446 MS.gene016080:intron 30.0%
! TTTTTGCTCAACAATATTGG+TGG + chr1.2:8039262-8039281 MS.gene016080:CDS 30.0%
!! ACATTTTAAAAATGGGTTCC+AGG - chr1.2:8037320-8037339 None:intergenic 30.0%
!! GACGATTATCATGTTTTTGT+AGG + chr1.2:8037589-8037608 MS.gene016080:intron 30.0%
!! GTGATTTTATTTCTCCTTAC+TGG + chr1.2:8037561-8037580 MS.gene016080:intron 30.0%
!!! CCTCTAAAATTGTCGTTTTT+TGG + chr1.2:8039805-8039824 MS.gene016080:intron 30.0%
!!! TCTTTGATGTTTTCAAGTGT+AGG - chr1.2:8039016-8039035 None:intergenic 30.0%
!!! TTTTGGTTGTTTCTTTACAG+AGG + chr1.2:8039822-8039841 MS.gene016080:intron 30.0%
AAACTTACTGTAGGATGGTA+TGG + chr1.2:8038117-8038136 MS.gene016080:intron 35.0%
AAGTTACTCAAGGACTATGT+TGG - chr1.2:8038363-8038382 None:intergenic 35.0%
ACCTTCTTCCATAAACTTCA+AGG - chr1.2:8037728-8037747 None:intergenic 35.0%
ACCTTGAAGTTTATGGAAGA+AGG + chr1.2:8037724-8037743 MS.gene016080:CDS 35.0%
ACTCAATGGTAACTTTCTTG+TGG - chr1.2:8039114-8039133 None:intergenic 35.0%
AGACATTAAAGAACTTCCTC+CGG - chr1.2:8039569-8039588 None:intergenic 35.0%
AGTTAGGAGAAACTTACTGT+AGG + chr1.2:8038108-8038127 MS.gene016080:intron 35.0%
ATGTCTGTAACTTTGGTGAA+AGG + chr1.2:8039583-8039602 MS.gene016080:CDS 35.0%
ATTAGGAGGATATTTCCCTT+GGG - chr1.2:8037679-8037698 None:intergenic 35.0%
ATTTGTTCAAACCCTAAGGT+TGG + chr1.2:8039196-8039215 MS.gene016080:CDS 35.0%
CAAACTTAGTACTGTCATCA+AGG - chr1.2:8038640-8038659 None:intergenic 35.0%
CGATCATCAATTACTCAATC+AGG - chr1.2:8039464-8039483 None:intergenic 35.0%
CTATTAGAGTTATCACAGCT+GGG + chr1.2:8038011-8038030 MS.gene016080:intron 35.0%
GGAAATGAAAACATTGAGAG+AGG + chr1.2:8037938-8037957 MS.gene016080:intron 35.0%
GGACTAACTAATTCTGTTAG+TGG + chr1.2:8038032-8038051 MS.gene016080:intron 35.0%
GTAGCTCAAGAATCAAGATT+TGG - chr1.2:8038547-8038566 None:intergenic 35.0%
TAGGGTTTGAACAAATTCCA+AGG - chr1.2:8039192-8039211 None:intergenic 35.0%
TATTGCTGATGCTTTGCAAT+GGG + chr1.2:8039081-8039100 MS.gene016080:CDS 35.0%
TCTAAACCACCATTGAGTTT+AGG - chr1.2:8039654-8039673 None:intergenic 35.0%
TCTATTAGAGTTATCACAGC+TGG + chr1.2:8038010-8038029 MS.gene016080:intron 35.0%
TGAAGTTTATGGAAGAAGGT+GGG + chr1.2:8037728-8037747 MS.gene016080:CDS 35.0%
TGTACAAACTAATATTGCCG+TGG - chr1.2:8039153-8039172 None:intergenic 35.0%
TTATTAGCAACATGCATTCC+TGG + chr1.2:8037641-8037660 MS.gene016080:CDS 35.0%
TTGAAGTTTATGGAAGAAGG+TGG + chr1.2:8037727-8037746 MS.gene016080:CDS 35.0%
TTGGAAACGTTAAGAAGATG+GGG + chr1.2:8037146-8037165 MS.gene016080:CDS 35.0%
TTGTTACAGACTTACAGTCA+TGG - chr1.2:8038244-8038263 None:intergenic 35.0%
TTTACAGAGGAAGACATTGT+AGG + chr1.2:8039835-8039854 MS.gene016080:intron 35.0%
TTTGGTGAAAGGTTTCTGAT+CGG + chr1.2:8039594-8039613 MS.gene016080:CDS 35.0%
TTTGTTCAAACCCTAAGGTT+GGG + chr1.2:8039197-8039216 MS.gene016080:CDS 35.0%
! AAAACGTACATGGATTTTCC+TGG - chr1.2:8039304-8039323 None:intergenic 35.0%
! ATTGAAGGCATACACTGTAA+GGG - chr1.2:8038861-8038880 None:intergenic 35.0%
! CTCAAGAATCAAGATTTGGT+AGG - chr1.2:8038543-8038562 None:intergenic 35.0%
! GACTCTAAAAGGACTATGTT+AGG - chr1.2:8037829-8037848 None:intergenic 35.0%
! TGGAATTTGTTCAAACCCTA+AGG + chr1.2:8039192-8039211 MS.gene016080:CDS 35.0%
!! AAATTGCATATGGGCATTGA+AGG - chr1.2:8038876-8038895 None:intergenic 35.0%
!! ATAAGCATTTGTTGTGCCAA+GGG + chr1.2:8038830-8038849 MS.gene016080:intron 35.0%
!! TTGAGTTTGCTGAAATTCTC+CGG + chr1.2:8039547-8039566 MS.gene016080:CDS 35.0%
!!! AACATAGTCCTTTTAGAGTC+CGG + chr1.2:8037829-8037848 MS.gene016080:CDS 35.0%
!!! ACCGTCTCTATGATTTTTTG+CGG + chr1.2:8038503-8038522 MS.gene016080:intron 35.0%
AAACTAATATTGCCGTGGCT+TGG - chr1.2:8039148-8039167 None:intergenic 40.0%
AACCGGGTTTCGATAGTATA+TGG - chr1.2:8037863-8037882 None:intergenic 40.0%
AACTCAATGGTGGTTTAGAG+TGG + chr1.2:8039655-8039674 MS.gene016080:CDS 40.0%
ACCGGGTTTCGATAGTATAT+GGG - chr1.2:8037862-8037881 None:intergenic 40.0%
AGGAGAAACTTACTGTAGGA+TGG + chr1.2:8038112-8038131 MS.gene016080:intron 40.0%
AGTGTAGGAAATACATGCTC+CGG - chr1.2:8039001-8039020 None:intergenic 40.0%
ATAATCGTCAGTAGCCAGTA+AGG - chr1.2:8037578-8037597 None:intergenic 40.0%
ATAGTATATGGGAGAACTGC+CGG - chr1.2:8037851-8037870 None:intergenic 40.0%
ATGCTGAAGCCTAAACTCAA+TGG + chr1.2:8039642-8039661 MS.gene016080:CDS 40.0%
CAATATTGGTCCCAACCTTA+GGG - chr1.2:8039210-8039229 None:intergenic 40.0%
GATTAGGAGGATATTTCCCT+TGG - chr1.2:8037680-8037699 None:intergenic 40.0%
GCCGCAAAAAATCATAGAGA+CGG - chr1.2:8038507-8038526 None:intergenic 40.0%
GGGCTCCAAATTTCAAAATG+CGG + chr1.2:8039703-8039722 MS.gene016080:CDS 40.0%
GGTTTGAACAAATTCCAAGG+TGG - chr1.2:8039189-8039208 None:intergenic 40.0%
GTATTGCTGATGCTTTGCAA+TGG + chr1.2:8039080-8039099 MS.gene016080:CDS 40.0%
GTTTCCTTCTTCAAGAGAGA+AGG - chr1.2:8038169-8038188 None:intergenic 40.0%
TACTGTAGGATGGTATGGTA+TGG + chr1.2:8038122-8038141 MS.gene016080:intron 40.0%
TCAAACCCAAAGGAGAGATT+GGG + chr1.2:8038935-8038954 MS.gene016080:CDS 40.0%
TCAATATTGGTCCCAACCTT+AGG - chr1.2:8039211-8039230 None:intergenic 40.0%
TCAGAACTGCTGATGGAATA+CGG + chr1.2:8037784-8037803 MS.gene016080:CDS 40.0%
TCATAGCTTCTTAGCTGTGT+AGG - chr1.2:8037049-8037068 None:intergenic 40.0%
TCCCATATACTATCGAAACC+CGG + chr1.2:8037858-8037877 MS.gene016080:CDS 40.0%
TGATCGTGTATAATTGGTCC+TGG + chr1.2:8037299-8037318 MS.gene016080:intron 40.0%
TGGAAACGTTAAGAAGATGG+GGG + chr1.2:8037147-8037166 MS.gene016080:CDS 40.0%
TTGAGAGAGGTAGTAGAGTT+TGG + chr1.2:8037951-8037970 MS.gene016080:intron 40.0%
TTGCTCAACAATATTGGTGG+AGG + chr1.2:8039265-8039284 MS.gene016080:CDS 40.0%
! AATGGTGGTTTAGAGTGGAT+GGG + chr1.2:8039660-8039679 MS.gene016080:CDS 40.0%
! CATTGAAGGCATACACTGTA+AGG - chr1.2:8038862-8038881 None:intergenic 40.0%
! CTTGTACTCGTACTGGTAAA+AGG - chr1.2:8038750-8038769 None:intergenic 40.0%
! CTTTTACCAGTACGAGTACA+AGG + chr1.2:8038748-8038767 MS.gene016080:CDS 40.0%
! GAATCAAGATTTGGTAGGAG+AGG - chr1.2:8038538-8038557 None:intergenic 40.0%
! TGGAATACGGACAAGTATTG+TGG + chr1.2:8037797-8037816 MS.gene016080:CDS 40.0%
!! GATAAGCATTTGTTGTGCCA+AGG + chr1.2:8038829-8038848 MS.gene016080:intron 40.0%
AATCACTATCACCCGCGATT+AGG - chr1.2:8037696-8037715 None:intergenic 45.0%
ACAGGATGAGTCAAACCCAA+AGG + chr1.2:8038925-8038944 MS.gene016080:intron 45.0%
ATCAGTGCTTCTCTTCGACT+AGG + chr1.2:8037085-8037104 MS.gene016080:CDS 45.0%
CAAACAATACTAACCTCCGC+CGG - chr1.2:8037227-8037246 None:intergenic 45.0%
CTGAAGCCTAAACTCAATGG+TGG + chr1.2:8039645-8039664 MS.gene016080:CDS 45.0%
GACCGGAAAAGATACAGCTT+GGG - chr1.2:8038454-8038473 None:intergenic 45.0%
GACTTGATTGATGCACCTTC+CGG + chr1.2:8037205-8037224 MS.gene016080:CDS 45.0%
GCTTCTTAGCTGTGTAGGAA+TGG - chr1.2:8037044-8037063 None:intergenic 45.0%
GGAAATATCCTCCTAATCGC+GGG + chr1.2:8037682-8037701 MS.gene016080:CDS 45.0%
GGGAAATATCCTCCTAATCG+CGG + chr1.2:8037681-8037700 MS.gene016080:CDS 45.0%
GGTAGACAAGATCGTGTTTC+AGG - chr1.2:8038619-8038638 None:intergenic 45.0%
GTATTCCATCAGCAGTTCTG+AGG - chr1.2:8037785-8037804 None:intergenic 45.0%
GTCAAACCCAAAGGAGAGAT+TGG + chr1.2:8038934-8038953 MS.gene016080:CDS 45.0%
GTTTAGGCTTCAGCATGACA+TGG - chr1.2:8039638-8039657 None:intergenic 45.0%
TATGGTATGGTATAGCCTGG+AGG + chr1.2:8038135-8038154 MS.gene016080:intron 45.0%
TGACCGGAAAAGATACAGCT+TGG - chr1.2:8038455-8038474 None:intergenic 45.0%
TGGAACTCGAGTACACTCAA+TGG - chr1.2:8039128-8039147 None:intergenic 45.0%
TGGTATGGTATGGTATAGCC+TGG + chr1.2:8038132-8038151 MS.gene016080:intron 45.0%
TGTGCCTTCTCTCTTGAAGA+AGG + chr1.2:8038162-8038181 MS.gene016080:intron 45.0%
TTCACAATGTAGCAACCCCT+TGG - chr1.2:8038579-8038598 None:intergenic 45.0%
! ACGGACAAGTATTGTGGAAC+TGG + chr1.2:8037803-8037822 MS.gene016080:CDS 45.0%
! CAATGGTGGTTTAGAGTGGA+TGG + chr1.2:8039659-8039678 MS.gene016080:CDS 45.0%
! CGTACTGGTAAAAGGCTACA+AGG - chr1.2:8038742-8038761 None:intergenic 45.0%
! GACCCAAGCTGTATCTTTTC+CGG + chr1.2:8038449-8038468 MS.gene016080:intron 45.0%
!! AGTTTGCTGAAATTCTCCGG+AGG + chr1.2:8039550-8039569 MS.gene016080:CDS 45.0%
AGATGGGGGATGATGTTCGA+AGG + chr1.2:8037161-8037180 MS.gene016080:CDS 50.0%
AGTGCTTCTCTTCGACTAGG+CGG + chr1.2:8037088-8037107 MS.gene016080:CDS 50.0%
ATGGGACCCAATCTCTCCTT+TGG - chr1.2:8038944-8038963 None:intergenic 50.0%
CACTGTAAGGGTTTGACCCT+TGG - chr1.2:8038849-8038868 None:intergenic 50.0%
CGAAGGCAATTCAAAGCTGC+AGG + chr1.2:8037178-8037197 MS.gene016080:CDS 50.0%
CGCAAACCTTGTACTCGTAC+TGG - chr1.2:8038757-8038776 None:intergenic 50.0%
CTAGGCGGTATAGGAGTAGA+AGG + chr1.2:8037103-8037122 MS.gene016080:CDS 50.0%
CTCGTGCTGAACTCAATTCC+AGG + chr1.2:8039047-8039066 MS.gene016080:CDS 50.0%
GAGAACTGCCGGACTCTAAA+AGG - chr1.2:8037840-8037859 None:intergenic 50.0%
GGAGGAAATCGATTAGAGCC+AGG + chr1.2:8039283-8039302 MS.gene016080:CDS 50.0%
GGCATAAAGTCATGATCGCC+GGG + chr1.2:8037749-8037768 MS.gene016080:CDS 50.0%
GGGCATAAAGTCATGATCGC+CGG + chr1.2:8037748-8037767 MS.gene016080:CDS 50.0%
TAACCGTCGTGCTGAGGAAT+GGG + chr1.2:8039683-8039702 MS.gene016080:CDS 50.0%
TCTCTTCGACTAGGCGGTAT+AGG + chr1.2:8037094-8037113 MS.gene016080:CDS 50.0%
TGGGACCCAATCTCTCCTTT+GGG - chr1.2:8038943-8038962 None:intergenic 50.0%
TGGTCGCGTGAAAATCCCAA+GGG + chr1.2:8037661-8037680 MS.gene016080:CDS 50.0%
TGTACTCGAGTTCCAAGCCA+CGG + chr1.2:8039133-8039152 MS.gene016080:CDS 50.0%
TTGATTGATGCACCTTCCGG+CGG + chr1.2:8037208-8037227 MS.gene016080:CDS 50.0%
! AGATTAGCTGACAGCCACCT+TGG + chr1.2:8039172-8039191 MS.gene016080:CDS 50.0%
!! GGACTCACTGTGAGAGCATT+TGG + chr1.2:8037127-8037146 MS.gene016080:CDS 50.0%
!! TGAGGCGAGCCTTGTTGAAA+TGG - chr1.2:8038273-8038292 None:intergenic 50.0%
AAGTCATGATCGCCGGGAAG+TGG + chr1.2:8037755-8037774 MS.gene016080:CDS 55.0%
AGTCATGATCGCCGGGAAGT+GGG + chr1.2:8037756-8037775 MS.gene016080:CDS 55.0%
CAATACTAACCTCCGCCGGA+AGG - chr1.2:8037223-8037242 None:intergenic 55.0%
CACTATCACCCGCGATTAGG+AGG - chr1.2:8037693-8037712 None:intergenic 55.0%
CTCGACATCCCAGAATACGC+CGG - chr1.2:8037014-8037033 None:intergenic 55.0%
CTGGTCGCGTGAAAATCCCA+AGG + chr1.2:8037660-8037679 MS.gene016080:CDS 55.0%
GGATGCCTCAGAACTGCTGA+TGG + chr1.2:8037777-8037796 MS.gene016080:CDS 55.0%
GGCGGTATAGGAGTAGAAGG+TGG + chr1.2:8037106-8037125 MS.gene016080:CDS 55.0%
GTAACCGTCGTGCTGAGGAA+TGG + chr1.2:8039682-8039701 MS.gene016080:CDS 55.0%
! CTTGGGATTTTCACGCGACC+AGG - chr1.2:8037662-8037681 None:intergenic 55.0%
!! TTCTGAGGCATCCCACTTCC+CGG - chr1.2:8037770-8037789 None:intergenic 55.0%
AGCTACACGAGCTCGCCAAG+GGG + chr1.2:8038561-8038580 MS.gene016080:intron 60.0%
ATTGATGCACCTTCCGGCGG+AGG + chr1.2:8037211-8037230 MS.gene016080:CDS 60.0%
GACATCCCAGAATACGCCGG+TGG - chr1.2:8037011-8037030 None:intergenic 60.0%
GAGCCCATTCCTCAGCACGA+CGG - chr1.2:8039689-8039708 None:intergenic 60.0%
GAGCTACACGAGCTCGCCAA+GGG + chr1.2:8038560-8038579 MS.gene016080:intron 60.0%
GATGGGTAACCGTCGTGCTG+AGG + chr1.2:8039677-8039696 MS.gene016080:CDS 60.0%
GGTGTCCACCGGCGTATTCT+GGG + chr1.2:8037003-8037022 MS.gene016080:CDS 60.0%
TGAGCTACACGAGCTCGCCA+AGG + chr1.2:8038559-8038578 MS.gene016080:intron 60.0%
TGGTGTCCACCGGCGTATTC+TGG + chr1.2:8037002-8037021 MS.gene016080:CDS 60.0%
! GAGAAGGCACAGACACCTCC+AGG - chr1.2:8038153-8038172 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 8037001 8039876 8037001 ID=MS.gene016080
chr1.2 mRNA 8037001 8039876 8037001 ID=MS.gene016080.t1;Parent=MS.gene016080
chr1.2 exon 8037001 8037232 8037001 ID=MS.gene016080.t1.exon1;Parent=MS.gene016080.t1
chr1.2 CDS 8037001 8037232 8037001 ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1
chr1.2 exon 8037611 8037879 8037611 ID=MS.gene016080.t1.exon2;Parent=MS.gene016080.t1
chr1.2 CDS 8037611 8037879 8037611 ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1
chr1.2 exon 8038747 8038809 8038747 ID=MS.gene016080.t1.exon3;Parent=MS.gene016080.t1
chr1.2 CDS 8038747 8038809 8038747 ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1
chr1.2 exon 8038929 8039314 8038929 ID=MS.gene016080.t1.exon4;Parent=MS.gene016080.t1
chr1.2 CDS 8038929 8039314 8038929 ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1
chr1.2 exon 8039545 8039744 8039545 ID=MS.gene016080.t1.exon5;Parent=MS.gene016080.t1
chr1.2 CDS 8039545 8039744 8039545 ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1
chr1.2 exon 8039842 8039876 8039842 ID=MS.gene016080.t1.exon6;Parent=MS.gene016080.t1
chr1.2 CDS 8039842 8039876 8039842 ID=cds.MS.gene016080.t1;Parent=MS.gene016080.t1
Gene Sequence

>MS.gene016080

ATGGTGTCCACCGGCGTATTCTGGGATGTCGAGAACTGTTCCATTCCTACACAGCTAAGAAGCTATGAAGTGATTAAACGAAGAATCAGTGCTTCTCTTCGACTAGGCGGTATAGGAGTAGAAGGTGGACTCACTGTGAGAGCATTTGGAAACGTTAAGAAGATGGGGGATGATGTTCGAAGGCAATTCAAAGCTGCAGGTGTTGACTTGATTGATGCACCTTCCGGCGGAGGTTAGTATTGTTTGTTTAACTCTTCATTTCTTTTGGTTTATGTCAACCCAGAATAGTTTTTTTGTATGATCGTGTATAATTGGTCCTGGAACCCATTTTTAAAATGTTTTCTTTGAGACTTATGAGTTTGATTTATTTGTTTTAGACTAATAGTACTTTGTAATGAGCTAGTTTTTGATTGACAATAATTTGTATTTATTAAGATTAACAGCCAAAGAGGAATGTGAAATTGAAATTATTGATGAGGATAGATATAAGAGATGAGACAAGTTTCAGAATGACATCATATGGGTCTGATGTTATGATTAATGTTGCGATTATATGATTTGTGATTTTATTTCTCCTTACTGGCTACTGACGATTATCATGTTTTTGTAGGTGTAAAAAGAAATGGGTCTGATGTTATGCTTATTAGCAACATGCATTCCTGGTCGCGTGAAAATCCCAAGGGAAATATCCTCCTAATCGCGGGTGATAGTGATTATGTTGAAACCTTGAAGTTTATGGAAGAAGGTGGGCATAAAGTCATGATCGCCGGGAAGTGGGATGCCTCAGAACTGCTGATGGAATACGGACAAGTATTGTGGAACTGGCCTAACATAGTCCTTTTAGAGTCCGGCAGTTCTCCCATATACTATCGAAACCCGGTTAGTTTCATTTCATTCAATTTACTTCTTTTTGCACTGATTTAACATTCCTATTTTTGGAAATGAAAACATTGAGAGAGGTAGTAGAGTTTGGTAATTTTTTAGTTGGGTTACTAATTATTTTAGTGATTCTATTAGAGTTATCACAGCTGGGACTAACTAATTCTGTTAGTGGACAGAATTATAATTAGACTTTGGAGGGAAAGCCGCTCTTCAATTAAATATTGCAGTTAGGAGAAACTTACTGTAGGATGGTATGGTATGGTATAGCCTGGAGGTGTCTGTGCCTTCTCTCTTGAAGAAGGAAACATTATGCTAAGTAAAACCTAACAATAGAAGTATAACATTCATGTAGCTTTCACCATGACTGTAAGTCTGTAACAAATCTAACCATTTCAACAAGGCTCGCCTCATGTAAAATTATTCAACAATAAGCAATATACTAACATTCATGTAAAACACCTCTATATGTTTTTACTTCCAACATAGTCCTTGAGTAACTTTAATTTATGAGGAAAGAGTTTAAAATTGTAATCAAATGTTAGGTTTTAGGGGTTTTACTATAGTTGGACCCAAGCTGTATCTTTTCCGGTCATGTTATATCGATTTGAACGCACGATTCAACCGTCTCTATGATTTTTTGCGGCAATCTCTTCCTCTCCTACCAAATCTTGATTCTTGAGCTACACGAGCTCGCCAAGGGGTTGCTACATTGTGAACTCATACGATCTTATGTCCTGAAACACGATCTTGTCTACCTTGATGACAGTACTAAGTTTGTTTTCCCCAATATAAATAAGAACACTTTTTACATTATCAAATGTTATCAGGTAAGATTTTATTAATTTTCTAGTATATTCCTTGTAGCCTTTTACCAGTACGAGTACAAGGTTTGCGACTAGACTAGCTGTAAAGCGTTTAAACTTACAGGTTTTTCCCTTTATATTCTGATAAGCATTTGTTGTGCCAAGGGTCAAACCCTTACAGTGTATGCCTTCAATGCCCATATGCAATTTTAGACATTGATTGCTAACGTTTTTCATTTACAGGATGAGTCAAACCCAAAGGAGAGATTGGGTCCCATAAATGTTGTTATTCGAATTTTGCAAATTTTACAGCCGGAGCATGTATTTCCTACACTTGAAAACATCAAAGAATGCTATGATGCTCGTGCTGAACTCAATTCCAGGAATAATATAAGTATTGCTGATGCTTTGCAATGGGCATGTGACCACAAGAAAGTTACCATTGAGTGTACTCGAGTTCCAAGCCACGGCAATATTAGTTTGTACAGATTAGCTGACAGCCACCTTGGAATTTGTTCAAACCCTAAGGTTGGGACCAATATTGATTATATAGAAGTGTGGCCACTATTGCAAACTTTTTTGCTCAACAATATTGGTGGAGGAAATCGATTAGAGCCAGGAAAATCCATGTACGTTTTTTATTTTCATTTTAATTGCACTCTTTTATATTTTGTCCAGTTCAATGATTTATTATCGAAAATTAATGTTAAGAGATGATTGTGTAATTCTTGTTATATTAAATATGAATAATTTGAGTAATTGAGCTCAATTATTTCCTGATTGAGTAATTGATGATCGAATAATTTGATATGATGATTGGAGTATAAGTTGAAATTAAGATTGAACATTTTCTGTTTAGGTTTGAGTTTGCTGAAATTCTCCGGAGGAAGTTCTTTAATGTCTGTAACTTTGGTGAAAGGTTTCTGATCGGTGATATATTAACTGTAATCCATGTCATGCTGAAGCCTAAACTCAATGGTGGTTTAGAGTGGATGGGTAACCGTCGTGCTGAGGAATGGGCTCCAAATTTCAAAATGCGGAATATTAGAAAATATAAAGGTACAGCGTTCATAAATATTTTTGGTAGCTACAAAATTGATAGTAAGATTTATTTTTACACCTCTAAAATTGTCGTTTTTTGGTTGTTTCTTTACAGAGGAAGACATTGTAGGCGTAGCTTCAAGACCTTGA

Protein sequence

>MS.gene016080.t1

MVSTGVFWDVENCSIPTQLRSYEVIKRRISASLRLGGIGVEGGLTVRAFGNVKKMGDDVRRQFKAAGVDLIDAPSGGGVKRNGSDVMLISNMHSWSRENPKGNILLIAGDSDYVETLKFMEEGGHKVMIAGKWDASELLMEYGQVLWNWPNIVLLESGSSPIYYRNPPFTSTSTRFATRLAVKRLNLQDESNPKERLGPINVVIRILQILQPEHVFPTLENIKECYDARAELNSRNNISIADALQWACDHKKVTIECTRVPSHGNISLYRLADSHLGICSNPKVGTNIDYIEVWPLLQTFLLNNIGGGNRLEPGKSMFEFAEILRRKFFNVCNFGERFLIGDILTVIHVMLKPKLNGGLEWMGNRRAEEWAPNFKMRNIRKYKEEDIVGVASRP