Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016084.t1 | XP_020255006.1 | 28.6 | 147 | 97 | 4 | 2 | 147 | 24 | 163 | 5.40E-08 | 68.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016084.t1 | A0A1R3IDK6 | 26.5 | 162 | 111 | 4 | 2 | 162 | 516 | 670 | 9.3e-10 | 74.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65952 | MS.gene016084 | PPI |
| MS.gene016084 | MS.gene99888 | PPI |
| MS.gene054900 | MS.gene016084 | PPI |
| MS.gene30034 | MS.gene016084 | PPI |
| MS.gene30285 | MS.gene016084 | PPI |
| MS.gene67910 | MS.gene016084 | PPI |
| MS.gene031882 | MS.gene016084 | PPI |
| MS.gene007962 | MS.gene016084 | PPI |
| MS.gene33586 | MS.gene016084 | PPI |
| MS.gene016084 | MS.gene039955 | PPI |
| MS.gene62998 | MS.gene016084 | PPI |
| MS.gene026616 | MS.gene016084 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016084.t1 | MTR_3g095410 | 26.994 | 163 | 109 | 5 | 2 | 162 | 62 | 216 | 2.40e-11 | 65.9 |
| MS.gene016084.t1 | MTR_7g110390 | 23.214 | 168 | 118 | 4 | 2 | 168 | 18 | 175 | 3.91e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCGAATAATGACATTTA+TGG | 0.141327 | 1.2:-8010471 | None:intergenic |
| ATATTCTGCATCTTGAAATT+TGG | 0.145622 | 1.2:-8011221 | None:intergenic |
| TGTCGAAACGTTGAAGTTTA+TGG | 0.164396 | 1.2:+8008910 | MS.gene016084:CDS |
| CTGTTTAGGTTTGAGTTTGC+TGG | 0.274885 | 1.2:+8011050 | MS.gene016084:intron |
| AACCGGGTTTCGATAGTATA+TGG | 0.277742 | 1.2:-8009053 | None:intergenic |
| CGAAGAGAAGCACTGATTCT+TGG | 0.279609 | 1.2:-8007636 | None:intergenic |
| TTCTTTAATGTCTGTAACTT+TGG | 0.293926 | 1.2:+8011089 | MS.gene016084:CDS |
| ATCAATACTTATATTATTCC+TGG | 0.306920 | 1.2:-8010576 | None:intergenic |
| TTCAAGATGCAGAATATTAG+AGG | 0.316521 | 1.2:+8011227 | MS.gene016084:CDS |
| ATTCGAATAATGACATTTAT+GGG | 0.337786 | 1.2:-8010470 | None:intergenic |
| TCAATATTGGTCCCAACCTT+AGG | 0.345166 | 1.2:-8010719 | None:intergenic |
| GGACCCACTGTGAGAGCATT+TGG | 0.346754 | 1.2:+8007684 | MS.gene016084:CDS |
| AACTCAATGGTGGTTTAGAT+TGG | 0.360175 | 1.2:+8011168 | MS.gene016084:CDS |
| GACTTGGTTGATGCTCCTTC+CGG | 0.378831 | 1.2:+8007762 | MS.gene016084:CDS |
| CACTTCTATATAATCAATAT+TGG | 0.395917 | 1.2:-8010732 | None:intergenic |
| TTATCAACAGCATGCATTCC+TGG | 0.397942 | 1.2:+8008834 | MS.gene016084:CDS |
| CAGAATATTAGAGGATATAA+AGG | 0.401584 | 1.2:+8011236 | MS.gene016084:CDS |
| CAATACGTGCAGCTTTGAAT+TGG | 0.406101 | 1.2:-8007740 | None:intergenic |
| GTCAGACTCAAAAGAGAGAT+TGG | 0.406119 | 1.2:+8010445 | MS.gene016084:CDS |
| CAATATTGGTCCCAACCTTA+GGG | 0.414014 | 1.2:-8010718 | None:intergenic |
| CTCGTCCTGAGCTCTATTCC+AGG | 0.414900 | 1.2:+8010558 | MS.gene016084:CDS |
| CAATGGTGGTTTAGATTGGA+TGG | 0.438492 | 1.2:+8011172 | MS.gene016084:CDS |
| AATCACTATCACCTGCGATT+AGG | 0.444325 | 1.2:-8008886 | None:intergenic |
| TCTAAACCACCATTGAGTTT+AGG | 0.445424 | 1.2:-8011164 | None:intergenic |
| ACGGACAAGTATGGTGGAAC+TGG | 0.447129 | 1.2:+8008996 | MS.gene016084:CDS |
| TTTGTTCAAACCCTAAGGTT+GGG | 0.454926 | 1.2:+8010708 | MS.gene016084:CDS |
| TATTGATAATGCTTTGCAAT+GGG | 0.461741 | 1.2:+8010592 | MS.gene016084:CDS |
| CAAAGCTGCACGTATTGACT+TGG | 0.463797 | 1.2:+8007746 | MS.gene016084:CDS |
| TGATGGAACACGGACAAGTA+TGG | 0.466653 | 1.2:+8008987 | MS.gene016084:CDS |
| TGGAATTTGTTCAAACCCTA+AGG | 0.466799 | 1.2:+8010703 | MS.gene016084:CDS |
| TAACTTCTTCTTAGTTGTGT+AGG | 0.467504 | 1.2:-8007600 | None:intergenic |
| TTGAGTTTGCTGGAATTCTC+CGG | 0.474656 | 1.2:+8011060 | MS.gene016084:CDS |
| GTTGATGCTCCTTCCGGTGG+TGG | 0.476589 | 1.2:+8007768 | MS.gene016084:CDS |
| TCTTCTTAGTTGTGTAGGAA+TGG | 0.479511 | 1.2:-8007595 | None:intergenic |
| ATTAGGAGGATATTTCCGTT+TGG | 0.485502 | 1.2:-8008869 | None:intergenic |
| ATGTCTGTAACTTTGGTGAA+AGG | 0.494538 | 1.2:+8011096 | MS.gene016084:CDS |
| CTAGGCGGTATACAATTAGA+AGG | 0.496982 | 1.2:+8007660 | MS.gene016084:CDS |
| ATTTGTTCAAACCCTAAGGT+TGG | 0.500980 | 1.2:+8010707 | MS.gene016084:CDS |
| GAGTCTGAAAGGACTATGTC+AGG | 0.502254 | 1.2:-8009019 | None:intergenic |
| AAACTAAGATTGCCATGGCT+TGG | 0.508897 | 1.2:-8010656 | None:intergenic |
| CACTATCACCTGCGATTAGG+AGG | 0.512369 | 1.2:-8008883 | None:intergenic |
| ACGTTGAAGTTTATGGAAGA+AGG | 0.512512 | 1.2:+8008917 | MS.gene016084:CDS |
| TTATTCCTGGAATAGAGCTC+AGG | 0.525218 | 1.2:-8010563 | None:intergenic |
| ACCGGGTTTCGATAGTATAT+GGG | 0.527100 | 1.2:-8009052 | None:intergenic |
| TTGCTCGACAATATTGGTGG+AGG | 0.529006 | 1.2:+8010776 | MS.gene016084:CDS |
| GGAGGAAATCGATTATATCC+TGG | 0.532417 | 1.2:+8010794 | MS.gene016084:CDS |
| GGATGCCTCAGAACTGCTGA+TGG | 0.532690 | 1.2:+8008970 | MS.gene016084:CDS |
| TCAGACTCAAAAGAGAGATT+GGG | 0.534948 | 1.2:+8010446 | MS.gene016084:CDS |
| TAACCGTCGTGCTGAGCAGT+GGG | 0.536987 | 1.2:+8011196 | MS.gene016084:CDS |
| GGGCATAAAGTCATGATCGC+GGG | 0.539590 | 1.2:+8008941 | MS.gene016084:CDS |
| GACATAGTCCTTTCAGACTC+TGG | 0.540375 | 1.2:+8009022 | MS.gene016084:CDS |
| AGATTAGCTGACAGCCACCT+TGG | 0.547787 | 1.2:+8010683 | MS.gene016084:CDS |
| AGACATTAAAGAACTTCCTC+CGG | 0.549304 | 1.2:-8011079 | None:intergenic |
| GTATTGATAATGCTTTGCAA+TGG | 0.556851 | 1.2:+8010591 | MS.gene016084:CDS |
| GGAAATATCCTCCTAATCGC+AGG | 0.563092 | 1.2:+8008875 | MS.gene016084:CDS |
| GTAACCGTCGTGCTGAGCAG+TGG | 0.563306 | 1.2:+8011195 | MS.gene016084:CDS |
| GAGAACTGCCAGAGTCTGAA+AGG | 0.567877 | 1.2:-8009030 | None:intergenic |
| GTTTAGGCTTCAGCATGACA+TGG | 0.572400 | 1.2:-8011148 | None:intergenic |
| TTGAAGTTTATGGAAGAAGG+TGG | 0.579140 | 1.2:+8008920 | MS.gene016084:CDS |
| GCTCAATGATAACTTTCTTG+TGG | 0.586041 | 1.2:-8010622 | None:intergenic |
| TTGGTTGATGCTCCTTCCGG+TGG | 0.589707 | 1.2:+8007765 | MS.gene016084:CDS |
| ATGCTGAAGCCTAAACTCAA+TGG | 0.597722 | 1.2:+8011155 | MS.gene016084:CDS |
| AATGGTGGTTTAGATTGGAT+GGG | 0.600043 | 1.2:+8011173 | MS.gene016084:CDS |
| TAGGGTTTGAACAAATTCCA+AGG | 0.603209 | 1.2:-8010700 | None:intergenic |
| TGGTCGCGTGAAAATCCAAA+CGG | 0.604433 | 1.2:+8008854 | MS.gene016084:CDS |
| TGAAGTTTATGGAAGAAGGT+GGG | 0.609175 | 1.2:+8008921 | MS.gene016084:CDS |
| GTGTTCCATCAGCAGTTCTG+AGG | 0.612050 | 1.2:-8008975 | None:intergenic |
| CATAAAGTCATGATCGCGGG+GGG | 0.613159 | 1.2:+8008944 | MS.gene016084:CDS |
| TTTCCAAATGCTCTCACAGT+GGG | 0.614305 | 1.2:-8007687 | None:intergenic |
| CAAACAATACTAACCACCAC+CGG | 0.615306 | 1.2:-8007781 | None:intergenic |
| GGCATAAAGTCATGATCGCG+GGG | 0.622202 | 1.2:+8008942 | MS.gene016084:CDS |
| TTTGGTGAAAGGATTCTGAT+CGG | 0.623784 | 1.2:+8011107 | MS.gene016084:CDS |
| CGTACTCGAGTTCCAAGCCA+TGG | 0.627935 | 1.2:+8010644 | MS.gene016084:CDS |
| CTGAAGCCTAAACTCAATGG+TGG | 0.628478 | 1.2:+8011158 | MS.gene016084:CDS |
| TCAGAACTGCTGATGGAACA+CGG | 0.629941 | 1.2:+8008977 | MS.gene016084:CDS |
| TGTACAAACTAAGATTGCCA+TGG | 0.630692 | 1.2:-8010661 | None:intergenic |
| ATCAGTGCTTCTCTTCGACT+AGG | 0.644770 | 1.2:+8007642 | MS.gene016084:CDS |
| CAATACTAACCACCACCGGA+AGG | 0.644814 | 1.2:-8007777 | None:intergenic |
| TGGAACACGGACAAGTATGG+TGG | 0.653691 | 1.2:+8008990 | MS.gene016084:CDS |
| TCCCATATACTATCGAAACC+CGG | 0.668326 | 1.2:+8009051 | MS.gene016084:CDS |
| GGCGGTATACAATTAGAAGG+TGG | 0.675527 | 1.2:+8007663 | MS.gene016084:CDS |
| TGGGCATAAAGTCATGATCG+CGG | 0.680404 | 1.2:+8008940 | MS.gene016084:CDS |
| ATATTGATTATATAGAAGTG+TGG | 0.680795 | 1.2:+8010735 | MS.gene016084:CDS |
| AGTGCTTCTCTTCGACTAGG+CGG | 0.682637 | 1.2:+8007645 | MS.gene016084:CDS |
| GAGCCCACTGCTCAGCACGA+CGG | 0.693284 | 1.2:-8011199 | None:intergenic |
| GGTTTGAACAAATTCCAAGG+TGG | 0.708113 | 1.2:-8010697 | None:intergenic |
| GTTTCCAAATGCTCTCACAG+TGG | 0.710906 | 1.2:-8007688 | None:intergenic |
| AGTTTGCTGGAATTCTCCGG+AGG | 0.712246 | 1.2:+8011063 | MS.gene016084:CDS |
| GCATAAAGTCATGATCGCGG+GGG | 0.739916 | 1.2:+8008943 | MS.gene016084:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTGAAATTTTTTATTTTTTT+TGG | + | chr1.2:8008616-8008635 | MS.gene016084:intron | 10.0% |
| !! | AAAATTAATAAAATCTTACC+GGG | - | chr1.2:8010213-8010232 | None:intergenic | 15.0% |
| !! | AAATAATTTGATATGATGAT+TGG | + | chr1.2:8010996-8011015 | MS.gene016084:intron | 15.0% |
| !! | ACAGAATTATAATTAAACTT+TGG | + | chr1.2:8009497-8009516 | MS.gene016084:intron | 15.0% |
| !! | ATGATAGGATATATAAAATA+AGG | - | chr1.2:8008529-8008548 | None:intergenic | 15.0% |
| !! | CAAAAGCTTAAAAATTAAAT+TGG | - | chr1.2:8010131-8010150 | None:intergenic | 15.0% |
| !! | GAAAATTAATAAAATCTTAC+CGG | - | chr1.2:8010214-8010233 | None:intergenic | 15.0% |
| !! | TATTAATGGAAATTACATAT+TGG | + | chr1.2:8010098-8010117 | MS.gene016084:intron | 15.0% |
| !!! | ACAATGTTCATAAATATTTT+TGG | + | chr1.2:8011260-8011279 | MS.gene016084:intron | 15.0% |
| !!! | ATAGTGTTCTTATTTATATT+GGG | - | chr1.2:8010008-8010027 | None:intergenic | 15.0% |
| !!! | TAATCAAATGTTACATTTTA+GGG | + | chr1.2:8009833-8009852 | MS.gene016084:intron | 15.0% |
| !!! | TATAGTGTTCTTATTTATAT+TGG | - | chr1.2:8010009-8010028 | None:intergenic | 15.0% |
| !! | AAAGATATGAAATAGTACAT+AGG | - | chr1.2:8008247-8008266 | None:intergenic | 20.0% |
| !! | AATTATAGTGACGTAAATTT+AGG | - | chr1.2:8008475-8008494 | None:intergenic | 20.0% |
| !! | AATTCGAATAATGACATTTA+TGG | - | chr1.2:8010474-8010493 | None:intergenic | 20.0% |
| !! | ATCAATACTTATATTATTCC+TGG | - | chr1.2:8010579-8010598 | None:intergenic | 20.0% |
| !! | ATGAAAATAAAAAACGTACA+TGG | - | chr1.2:8010825-8010844 | None:intergenic | 20.0% |
| !! | ATTCGAATAATGACATTTAT+GGG | - | chr1.2:8010473-8010492 | None:intergenic | 20.0% |
| !! | CAAAAATAGGAATGTTAAAT+TGG | - | chr1.2:8009108-8009127 | None:intergenic | 20.0% |
| !! | CACTTCTATATAATCAATAT+TGG | - | chr1.2:8010735-8010754 | None:intergenic | 20.0% |
| !! | GAATTATAATTAAACTTTGG+AGG | + | chr1.2:8009500-8009519 | MS.gene016084:intron | 20.0% |
| !! | TAAATTGAAATGAAACTAAC+CGG | - | chr1.2:8009073-8009092 | None:intergenic | 20.0% |
| !! | TATAAAATAAGGAGTGATTA+TGG | - | chr1.2:8008518-8008537 | None:intergenic | 20.0% |
| !! | TATGTATAATCGTGTATAAT+TGG | + | chr1.2:8007828-8007847 | MS.gene016084:intron | 20.0% |
| !! | TGTAAAACGTTTAAACTTAA+AGG | + | chr1.2:8010292-8010311 | MS.gene016084:intron | 20.0% |
| !!! | AATCAAATGTTACATTTTAG+GGG | + | chr1.2:8009834-8009853 | MS.gene016084:intron | 20.0% |
| !!! | ACATGTTAAAGTACTATTAA+TGG | + | chr1.2:8010084-8010103 | MS.gene016084:intron | 20.0% |
| !!! | ATATTGATTATATAGAAGTG+TGG | + | chr1.2:8010735-8010754 | MS.gene016084:CDS | 20.0% |
| !!! | ATGTTTTCATTTCCAAAAAT+AGG | - | chr1.2:8009121-8009140 | None:intergenic | 20.0% |
| !!! | CAATTTAACATTCCTATTTT+TGG | + | chr1.2:8009106-8009125 | MS.gene016084:intron | 20.0% |
| !!! | CTTTTAGTAACAAGTTATTT+AGG | - | chr1.2:8008429-8008448 | None:intergenic | 20.0% |
| !!! | GTAATCAAATGTTACATTTT+AGG | + | chr1.2:8009832-8009851 | MS.gene016084:intron | 20.0% |
| !!! | TAGTGTTCTTATTTATATTG+GGG | - | chr1.2:8010007-8010026 | None:intergenic | 20.0% |
| !!! | TCTTGAATACTATTTTGTAT+TGG | + | chr1.2:8009226-8009245 | MS.gene016084:intron | 20.0% |
| !!! | TTGTTGAATAATTTTACATG+AGG | - | chr1.2:8009706-8009725 | None:intergenic | 20.0% |
| ! | AAATTGAAATGAAACTAACC+GGG | - | chr1.2:8009072-8009091 | None:intergenic | 25.0% |
| ! | AAGTATCAAAGAAAACATTC+AGG | - | chr1.2:8007855-8007874 | None:intergenic | 25.0% |
| ! | AATTATTACGAGACAACATA+AGG | - | chr1.2:8009190-8009209 | None:intergenic | 25.0% |
| ! | AGTATAACTATCATTGCTAT+TGG | - | chr1.2:8008400-8008419 | None:intergenic | 25.0% |
| ! | AGTTCATAGAAATAGTTGAA+CGG | - | chr1.2:8009921-8009940 | None:intergenic | 25.0% |
| ! | AGTTTAGAGAAACTTATTGT+AGG | + | chr1.2:8009545-8009564 | MS.gene016084:intron | 25.0% |
| ! | ATATTCTGCATCTTGAAATT+TGG | - | chr1.2:8011224-8011243 | None:intergenic | 25.0% |
| ! | ATCACAGTTGTAATATAGTT+GGG | + | chr1.2:8009401-8009420 | MS.gene016084:intron | 25.0% |
| ! | CAGAATATTAGAGGATATAA+AGG | + | chr1.2:8011236-8011255 | MS.gene016084:CDS | 25.0% |
| ! | GATGATAAATATCATTGAAC+TGG | - | chr1.2:8010874-8010893 | None:intergenic | 25.0% |
| ! | GTAGCTTATTTATAGTGATT+TGG | - | chr1.2:8008223-8008242 | None:intergenic | 25.0% |
| ! | GTTTAACTCTTCATTTCTTA+TGG | + | chr1.2:8007803-8007822 | MS.gene016084:intron | 25.0% |
| ! | TAAAAAATACTTCCTACTTG+TGG | + | chr1.2:8010169-8010188 | MS.gene016084:intron | 25.0% |
| ! | TATCACAGTTGTAATATAGT+TGG | + | chr1.2:8009400-8009419 | MS.gene016084:intron | 25.0% |
| ! | TGTTGTCTCGTAATAATTAT+TGG | + | chr1.2:8009192-8009211 | MS.gene016084:intron | 25.0% |
| ! | TTCTTTAATGTCTGTAACTT+TGG | + | chr1.2:8011089-8011108 | MS.gene016084:CDS | 25.0% |
| !! | AAGTGTCTAAAATTGCATAT+GGG | - | chr1.2:8010396-8010415 | None:intergenic | 25.0% |
| !! | AGATTGAACATTTTCTGTTT+AGG | + | chr1.2:8011036-8011055 | MS.gene016084:intron | 25.0% |
| !! | ATTTTAGGCAAATACATGAA+TGG | + | chr1.2:8009282-8009301 | MS.gene016084:intron | 25.0% |
| !! | GTATAACTATCATTGCTATT+GGG | - | chr1.2:8008399-8008418 | None:intergenic | 25.0% |
| !! | TAAGTGTCTAAAATTGCATA+TGG | - | chr1.2:8010397-8010416 | None:intergenic | 25.0% |
| !! | TTACAAAGTACTAGTATGAT+AGG | - | chr1.2:8008544-8008563 | None:intergenic | 25.0% |
| !! | TTTCAGGTGTAAAAAGAAAT+GGG | + | chr1.2:8008798-8008817 | MS.gene016084:intron | 25.0% |
| !!! | ATTTTTGGTAGCTACAAAAT+TGG | + | chr1.2:8011275-8011294 | MS.gene016084:intron | 25.0% |
| !!! | CAAGTTTCTTTTTTGAATTC+TGG | - | chr1.2:8007912-8007931 | None:intergenic | 25.0% |
| !!! | CGAGTAGTTTTAATTTATGA+GGG | + | chr1.2:8009795-8009814 | MS.gene016084:intron | 25.0% |
| !!! | TATTGATAATGCTTTGCAAT+GGG | + | chr1.2:8010592-8010611 | MS.gene016084:CDS | 25.0% |
| !!! | TCGAGTAGTTTTAATTTATG+AGG | + | chr1.2:8009794-8009813 | MS.gene016084:intron | 25.0% |
| !!! | TCTTTGATATTTTCAAGTGT+AGG | - | chr1.2:8010527-8010546 | None:intergenic | 25.0% |
| !!! | TTTTCAGGTGTAAAAAGAAA+TGG | + | chr1.2:8008797-8008816 | MS.gene016084:intron | 25.0% |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr1.2:8008373-8008392 | MS.gene016084:intron | 30.0% | |
| AAACTCTAACAGTTTCAACA+AGG | + | chr1.2:8009676-8009695 | MS.gene016084:intron | 30.0% | |
| AAATGCTTATCAGAATCTAG+AGG | - | chr1.2:8010326-8010345 | None:intergenic | 30.0% | |
| AATGCTTATCAGAATCTAGA+GGG | - | chr1.2:8010325-8010344 | None:intergenic | 30.0% | |
| ACAAGAAAGTGAAATTGATG+AGG | + | chr1.2:8008667-8008686 | MS.gene016084:intron | 30.0% | |
| AGACAACATAAGGATAGAAA+AGG | - | chr1.2:8009180-8009199 | None:intergenic | 30.0% | |
| AGCAAAAAAGTTTGCAATTG+TGG | - | chr1.2:8010761-8010780 | None:intergenic | 30.0% | |
| AGTACGCATGAGATTATATA+AGG | - | chr1.2:8007973-8007992 | None:intergenic | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr1.2:8008372-8008391 | MS.gene016084:intron | 30.0% | |
| CAATCTTAGCTAACAACATT+TGG | - | chr1.2:8010037-8010056 | None:intergenic | 30.0% | |
| GAAACTGTTAGAGTTTGATA+CGG | - | chr1.2:8009672-8009691 | None:intergenic | 30.0% | |
| GAGCTTATGTTATGAATCAA+AGG | - | chr1.2:8008353-8008372 | None:intergenic | 30.0% | |
| GTCAGTAAGGAGAAATAAAA+TGG | - | chr1.2:8008760-8008779 | None:intergenic | 30.0% | |
| TAAATAAGGTTTCCACAAGT+AGG | - | chr1.2:8010184-8010203 | None:intergenic | 30.0% | |
| TAACTTCTTCTTAGTTGTGT+AGG | - | chr1.2:8007603-8007622 | None:intergenic | 30.0% | |
| TACTTTAACATGTTCCCTTA+GGG | - | chr1.2:8010077-8010096 | None:intergenic | 30.0% | |
| TAGAGAAACTTATTGTAGGA+TGG | + | chr1.2:8009549-8009568 | MS.gene016084:intron | 30.0% | |
| TAGATTGTATAGTTCTCTCT+AGG | - | chr1.2:8008296-8008315 | None:intergenic | 30.0% | |
| TCAAATCGATATAACATGAC+CGG | - | chr1.2:8009893-8009912 | None:intergenic | 30.0% | |
| TGATCATCAATTACTCAATC+AGG | - | chr1.2:8010977-8010996 | None:intergenic | 30.0% | |
| TTATGAATCAAAGGATTCCA+TGG | - | chr1.2:8008344-8008363 | None:intergenic | 30.0% | |
| TTATTAGTAGGGTGTATGTT+AGG | + | chr1.2:8009359-8009378 | MS.gene016084:intron | 30.0% | |
| TTCAAGATGCAGAATATTAG+AGG | + | chr1.2:8011227-8011246 | MS.gene016084:CDS | 30.0% | |
| TTGGAAATGAAAACATTGAG+AGG | + | chr1.2:8009125-8009144 | MS.gene016084:intron | 30.0% | |
| ! | GATGTCATTCTGCATATTTT+AGG | + | chr1.2:8009267-8009286 | MS.gene016084:intron | 30.0% |
| ! | TTTAGGGGTTTTACTATAGT+TGG | + | chr1.2:8009849-8009868 | MS.gene016084:intron | 30.0% |
| !! | GTATTGATAATGCTTTGCAA+TGG | + | chr1.2:8010591-8010610 | MS.gene016084:CDS | 30.0% |
| !!! | ACTTTTTTGCTCGACAATAT+TGG | + | chr1.2:8010770-8010789 | MS.gene016084:CDS | 30.0% |
| !!! | TGCTCACTTTTTTCATTTAC+AGG | + | chr1.2:8010418-8010437 | MS.gene016084:intron | 30.0% |
| !!! | TTTTGGTTGTTTCTTTTCAG+AGG | + | chr1.2:8011335-8011354 | MS.gene016084:intron | 30.0% |
| AAACTACTCGATGACTTTGT+TGG | - | chr1.2:8009785-8009804 | None:intergenic | 35.0% | |
| AACTCAATGGTGGTTTAGAT+TGG | + | chr1.2:8011168-8011187 | MS.gene016084:CDS | 35.0% | |
| AATGGTGGTTTAGATTGGAT+GGG | + | chr1.2:8011173-8011192 | MS.gene016084:CDS | 35.0% | |
| ACGTTGAAGTTTATGGAAGA+AGG | + | chr1.2:8008917-8008936 | MS.gene016084:CDS | 35.0% | |
| AGACATTAAAGAACTTCCTC+CGG | - | chr1.2:8011082-8011101 | None:intergenic | 35.0% | |
| ATGTCTGTAACTTTGGTGAA+AGG | + | chr1.2:8011096-8011115 | MS.gene016084:CDS | 35.0% | |
| ATTAGGAGGATATTTCCGTT+TGG | - | chr1.2:8008872-8008891 | None:intergenic | 35.0% | |
| ATTTGTTCAAACCCTAAGGT+TGG | + | chr1.2:8010707-8010726 | MS.gene016084:CDS | 35.0% | |
| CAAACTTAGTACTGTCATCA+AGG | - | chr1.2:8009980-8009999 | None:intergenic | 35.0% | |
| CATTTGTAGTGCTATGCTAT+GGG | + | chr1.2:8010341-8010360 | MS.gene016084:intron | 35.0% | |
| CTGTTAGAGTTATCTCAGTT+GGG | + | chr1.2:8009445-8009464 | MS.gene016084:intron | 35.0% | |
| GCTCAATGATAACTTTCTTG+TGG | - | chr1.2:8010625-8010644 | None:intergenic | 35.0% | |
| GTACAGTGAAGAAGATAACT+TGG | + | chr1.2:8008164-8008183 | MS.gene016084:intron | 35.0% | |
| GTACTTTAACATGTTCCCTT+AGG | - | chr1.2:8010078-8010097 | None:intergenic | 35.0% | |
| GTGAAATTGATGAGGATACA+TGG | + | chr1.2:8008675-8008694 | MS.gene016084:intron | 35.0% | |
| GTTTCCTTCTTCAAAAGAGA+AGG | - | chr1.2:8009596-8009615 | None:intergenic | 35.0% | |
| TAAACTGCACAATTGAAGAG+TGG | - | chr1.2:8009531-8009550 | None:intergenic | 35.0% | |
| TAATCTCATGCGTACTTGTT+TGG | + | chr1.2:8007977-8007996 | MS.gene016084:intron | 35.0% | |
| TAGGGTTTGAACAAATTCCA+AGG | - | chr1.2:8010703-8010722 | None:intergenic | 35.0% | |
| TCAGACTCAAAAGAGAGATT+GGG | + | chr1.2:8010446-8010465 | MS.gene016084:CDS | 35.0% | |
| TCTAAACCACCATTGAGTTT+AGG | - | chr1.2:8011167-8011186 | None:intergenic | 35.0% | |
| TCTGTTAGAGTTATCTCAGT+TGG | + | chr1.2:8009444-8009463 | MS.gene016084:intron | 35.0% | |
| TCTTCTTAGTTGTGTAGGAA+TGG | - | chr1.2:8007598-8007617 | None:intergenic | 35.0% | |
| TGAAGTTTATGGAAGAAGGT+GGG | + | chr1.2:8008921-8008940 | MS.gene016084:CDS | 35.0% | |
| TGTACAAACTAAGATTGCCA+TGG | - | chr1.2:8010664-8010683 | None:intergenic | 35.0% | |
| TGTCGAAACGTTGAAGTTTA+TGG | + | chr1.2:8008910-8008929 | MS.gene016084:CDS | 35.0% | |
| TTGAAGTTTATGGAAGAAGG+TGG | + | chr1.2:8008920-8008939 | MS.gene016084:CDS | 35.0% | |
| TTTGGTGAAAGGATTCTGAT+CGG | + | chr1.2:8011107-8011126 | MS.gene016084:CDS | 35.0% | |
| TTTGTTCAAACCCTAAGGTT+GGG | + | chr1.2:8010708-8010727 | MS.gene016084:CDS | 35.0% | |
| ! | AAAACGTACATGGATTTTCC+AGG | - | chr1.2:8010815-8010834 | None:intergenic | 35.0% |
| ! | AAACCTTATTTAGCATGACC+CGG | + | chr1.2:8010192-8010211 | MS.gene016084:intron | 35.0% |
| ! | ATTGAAGGCATACACTGTAA+GGG | - | chr1.2:8010372-8010391 | None:intergenic | 35.0% |
| ! | TGGAATTTGTTCAAACCCTA+AGG | + | chr1.2:8010703-8010722 | MS.gene016084:CDS | 35.0% |
| ! | TTGCATTTGATCTAGAACCA+TGG | + | chr1.2:8008324-8008343 | MS.gene016084:intron | 35.0% |
| ! | TTTTCAGAGGAAGACATTAG+AGG | + | chr1.2:8011348-8011367 | MS.gene016084:intron | 35.0% |
| ! | TTTTTGCTCGACAATATTGG+TGG | + | chr1.2:8010773-8010792 | MS.gene016084:CDS | 35.0% |
| !! | AAATTGCATATGGGCATTGA+AGG | - | chr1.2:8010387-8010406 | None:intergenic | 35.0% |
| !! | TGGTTCTAGATCAAATGCAA+TGG | - | chr1.2:8008324-8008343 | None:intergenic | 35.0% |
| AAACTAAGATTGCCATGGCT+TGG | - | chr1.2:8010659-8010678 | None:intergenic | 40.0% | |
| AAATGCTAACATGTGCCCTA+AGG | + | chr1.2:8010059-8010078 | MS.gene016084:intron | 40.0% | |
| AACCGGGTTTCGATAGTATA+TGG | - | chr1.2:8009056-8009075 | None:intergenic | 40.0% | |
| AATCACTATCACCTGCGATT+AGG | - | chr1.2:8008889-8008908 | None:intergenic | 40.0% | |
| AATGCTAACATGTGCCCTAA+GGG | + | chr1.2:8010060-8010079 | MS.gene016084:intron | 40.0% | |
| ACCGGGTTTCGATAGTATAT+GGG | - | chr1.2:8009055-8009074 | None:intergenic | 40.0% | |
| ATGCTGAAGCCTAAACTCAA+TGG | + | chr1.2:8011155-8011174 | MS.gene016084:CDS | 40.0% | |
| CAAACAATACTAACCACCAC+CGG | - | chr1.2:8007784-8007803 | None:intergenic | 40.0% | |
| CAATATTGGTCCCAACCTTA+GGG | - | chr1.2:8010721-8010740 | None:intergenic | 40.0% | |
| CAATGGTGGTTTAGATTGGA+TGG | + | chr1.2:8011172-8011191 | MS.gene016084:CDS | 40.0% | |
| CAGACCAGCTGTTATTAGTA+GGG | + | chr1.2:8009348-8009367 | MS.gene016084:intron | 40.0% | |
| CCAAAAAACGTCGAAGTTAG+AGG | - | chr1.2:8011321-8011340 | None:intergenic | 40.0% | |
| CTAGGCGGTATACAATTAGA+AGG | + | chr1.2:8007660-8007679 | MS.gene016084:CDS | 40.0% | |
| CTTGTACTCGTAGTGGTAAA+AGG | - | chr1.2:8010254-8010273 | None:intergenic | 40.0% | |
| GACCGGAAAAGATACAACTT+GGG | - | chr1.2:8009876-8009895 | None:intergenic | 40.0% | |
| GCATTTGTAGTGCTATGCTA+TGG | + | chr1.2:8010340-8010359 | MS.gene016084:intron | 40.0% | |
| GGAGGAAATCGATTATATCC+TGG | + | chr1.2:8010794-8010813 | MS.gene016084:CDS | 40.0% | |
| GGTTTGAACAAATTCCAAGG+TGG | - | chr1.2:8010700-8010719 | None:intergenic | 40.0% | |
| GTCAGACTCAAAAGAGAGAT+TGG | + | chr1.2:8010445-8010464 | MS.gene016084:CDS | 40.0% | |
| GTTAGAGTTTGATACGGTCT+TGG | - | chr1.2:8009666-8009685 | None:intergenic | 40.0% | |
| TACACCCTACTAATAACAGC+TGG | - | chr1.2:8009355-8009374 | None:intergenic | 40.0% | |
| TATTGTAGGATGGTATAGCC+TGG | + | chr1.2:8009559-8009578 | MS.gene016084:intron | 40.0% | |
| TCAATATTGGTCCCAACCTT+AGG | - | chr1.2:8010722-8010741 | None:intergenic | 40.0% | |
| TCCCATATACTATCGAAACC+CGG | + | chr1.2:8009051-8009070 | MS.gene016084:CDS | 40.0% | |
| TGACCGGAAAAGATACAACT+TGG | - | chr1.2:8009877-8009896 | None:intergenic | 40.0% | |
| TTACCGGGTCATGCTAAATA+AGG | - | chr1.2:8010198-8010217 | None:intergenic | 40.0% | |
| TTATCAACAGCATGCATTCC+TGG | + | chr1.2:8008834-8008853 | MS.gene016084:CDS | 40.0% | |
| TTATTCCTGGAATAGAGCTC+AGG | - | chr1.2:8010566-8010585 | None:intergenic | 40.0% | |
| TTTCCAAATGCTCTCACAGT+GGG | - | chr1.2:8007690-8007709 | None:intergenic | 40.0% | |
| ! | ATTTCTCCTTACTGACTGAC+TGG | + | chr1.2:8008764-8008783 | MS.gene016084:intron | 40.0% |
| ! | CATTGAAGGCATACACTGTA+AGG | - | chr1.2:8010373-8010392 | None:intergenic | 40.0% |
| ! | CTGTTTAGGTTTGAGTTTGC+TGG | + | chr1.2:8011050-8011069 | MS.gene016084:intron | 40.0% |
| ! | CTTTTACCACTACGAGTACA+AGG | + | chr1.2:8010252-8010271 | MS.gene016084:intron | 40.0% |
| ! | GACCCAAGTTGTATCTTTTC+CGG | + | chr1.2:8009871-8009890 | MS.gene016084:intron | 40.0% |
| !! | CAATACGTGCAGCTTTGAAT+TGG | - | chr1.2:8007743-8007762 | None:intergenic | 40.0% |
| !! | TGTGCCTTCTCTTTTGAAGA+AGG | + | chr1.2:8009589-8009608 | MS.gene016084:intron | 40.0% |
| !! | TTGAGTTTGCTGGAATTCTC+CGG | + | chr1.2:8011060-8011079 | MS.gene016084:CDS | 40.0% |
| !!! | ACTGGCTATCATGCTTTTTC+AGG | + | chr1.2:8008782-8008801 | MS.gene016084:intron | 40.0% |
| !!! | CCTCTAACTTCGACGTTTTT+TGG | + | chr1.2:8011318-8011337 | MS.gene016084:intron | 40.0% |
| AGAGTTTGATACGGTCTTGG+TGG | - | chr1.2:8009663-8009682 | None:intergenic | 45.0% | |
| ATCAGTGCTTCTCTTCGACT+AGG | + | chr1.2:8007642-8007661 | MS.gene016084:CDS | 45.0% | |
| CATTGAGAGGTAGCAGAGTT+TGG | + | chr1.2:8009138-8009157 | MS.gene016084:intron | 45.0% | |
| CTGAAGCCTAAACTCAATGG+TGG | + | chr1.2:8011158-8011177 | MS.gene016084:CDS | 45.0% | |
| GACATAGTCCTTTCAGACTC+TGG | + | chr1.2:8009022-8009041 | MS.gene016084:CDS | 45.0% | |
| GAGTCTGAAAGGACTATGTC+AGG | - | chr1.2:8009022-8009041 | None:intergenic | 45.0% | |
| GCAGACCAGCTGTTATTAGT+AGG | + | chr1.2:8009347-8009366 | MS.gene016084:intron | 45.0% | |
| GGAAATATCCTCCTAATCGC+AGG | + | chr1.2:8008875-8008894 | MS.gene016084:CDS | 45.0% | |
| GGCGGTATACAATTAGAAGG+TGG | + | chr1.2:8007663-8007682 | MS.gene016084:CDS | 45.0% | |
| GTCTGCTAACACTGTATGAG+AGG | - | chr1.2:8009333-8009352 | None:intergenic | 45.0% | |
| GTTTAGGCTTCAGCATGACA+TGG | - | chr1.2:8011151-8011170 | None:intergenic | 45.0% | |
| GTTTCCAAATGCTCTCACAG+TGG | - | chr1.2:8007691-8007710 | None:intergenic | 45.0% | |
| TCAGAACTGCTGATGGAACA+CGG | + | chr1.2:8008977-8008996 | MS.gene016084:CDS | 45.0% | |
| TGATAGCCAGTCAGTCAGTA+AGG | - | chr1.2:8008773-8008792 | None:intergenic | 45.0% | |
| TGATGGAACACGGACAAGTA+TGG | + | chr1.2:8008987-8009006 | MS.gene016084:CDS | 45.0% | |
| TGGGCATAAAGTCATGATCG+CGG | + | chr1.2:8008940-8008959 | MS.gene016084:CDS | 45.0% | |
| TGGTCGCGTGAAAATCCAAA+CGG | + | chr1.2:8008854-8008873 | MS.gene016084:CDS | 45.0% | |
| TTATCTCAGTTGGGACAGCT+GGG | + | chr1.2:8009454-8009473 | MS.gene016084:intron | 45.0% | |
| TTGCTCGACAATATTGGTGG+AGG | + | chr1.2:8010776-8010795 | MS.gene016084:CDS | 45.0% | |
| !! | CAAAGCTGCACGTATTGACT+TGG | + | chr1.2:8007746-8007765 | MS.gene016084:CDS | 45.0% |
| !! | CGAAGAGAAGCACTGATTCT+TGG | - | chr1.2:8007639-8007658 | None:intergenic | 45.0% |
| AGTGCTTCTCTTCGACTAGG+CGG | + | chr1.2:8007645-8007664 | MS.gene016084:CDS | 50.0% | |
| CAATACTAACCACCACCGGA+AGG | - | chr1.2:8007780-8007799 | None:intergenic | 50.0% | |
| CACTATCACCTGCGATTAGG+AGG | - | chr1.2:8008886-8008905 | None:intergenic | 50.0% | |
| CATAAAGTCATGATCGCGGG+GGG | + | chr1.2:8008944-8008963 | MS.gene016084:CDS | 50.0% | |
| GAGAACTGCCAGAGTCTGAA+AGG | - | chr1.2:8009033-8009052 | None:intergenic | 50.0% | |
| GCATAAAGTCATGATCGCGG+GGG | + | chr1.2:8008943-8008962 | MS.gene016084:CDS | 50.0% | |
| GGCATAAAGTCATGATCGCG+GGG | + | chr1.2:8008942-8008961 | MS.gene016084:CDS | 50.0% | |
| GGGCATAAAGTCATGATCGC+GGG | + | chr1.2:8008941-8008960 | MS.gene016084:CDS | 50.0% | |
| GTGTTCCATCAGCAGTTCTG+AGG | - | chr1.2:8008978-8008997 | None:intergenic | 50.0% | |
| GTTATCTCAGTTGGGACAGC+TGG | + | chr1.2:8009453-8009472 | MS.gene016084:intron | 50.0% | |
| TGGAACACGGACAAGTATGG+TGG | + | chr1.2:8008990-8009009 | MS.gene016084:CDS | 50.0% | |
| TGTAGGATGGTATAGCCTGG+AGG | + | chr1.2:8009562-8009581 | MS.gene016084:intron | 50.0% | |
| ! | ACGGACAAGTATGGTGGAAC+TGG | + | chr1.2:8008996-8009015 | MS.gene016084:CDS | 50.0% |
| ! | AGATTAGCTGACAGCCACCT+TGG | + | chr1.2:8010683-8010702 | MS.gene016084:CDS | 50.0% |
| ! | GACTTGGTTGATGCTCCTTC+CGG | + | chr1.2:8007762-8007781 | MS.gene016084:CDS | 50.0% |
| ! | GTTTGGATTTTCACGCGACC+AGG | - | chr1.2:8008855-8008874 | None:intergenic | 50.0% |
| ! | TCATTGCTATTGGGCCCGTT+TGG | - | chr1.2:8008390-8008409 | None:intergenic | 50.0% |
| !! | AGTTTGCTGGAATTCTCCGG+AGG | + | chr1.2:8011063-8011082 | MS.gene016084:CDS | 50.0% |
| CGTACTCGAGTTCCAAGCCA+TGG | + | chr1.2:8010644-8010663 | MS.gene016084:CDS | 55.0% | |
| CTCGTCCTGAGCTCTATTCC+AGG | + | chr1.2:8010558-8010577 | MS.gene016084:CDS | 55.0% | |
| GGATGCCTCAGAACTGCTGA+TGG | + | chr1.2:8008970-8008989 | MS.gene016084:CDS | 55.0% | |
| TAACCGTCGTGCTGAGCAGT+GGG | + | chr1.2:8011196-8011215 | MS.gene016084:CDS | 55.0% | |
| ! | CGCAAGCCTTGTACTCGTAG+TGG | - | chr1.2:8010261-8010280 | None:intergenic | 55.0% |
| ! | TTGGTTGATGCTCCTTCCGG+TGG | + | chr1.2:8007765-8007784 | MS.gene016084:CDS | 55.0% |
| !! | GGACCCACTGTGAGAGCATT+TGG | + | chr1.2:8007684-8007703 | MS.gene016084:CDS | 55.0% |
| AAGTCATGATCGCGGGGGGA+TGG | + | chr1.2:8008948-8008967 | MS.gene016084:CDS | 60.0% | |
| AGTCATGATCGCGGGGGGAT+GGG | + | chr1.2:8008949-8008968 | MS.gene016084:CDS | 60.0% | |
| GTAACCGTCGTGCTGAGCAG+TGG | + | chr1.2:8011195-8011214 | MS.gene016084:CDS | 60.0% | |
| GTTGATGCTCCTTCCGGTGG+TGG | + | chr1.2:8007768-8007787 | MS.gene016084:CDS | 60.0% | |
| ! | GAGAAGGCACAGACACCTCC+AGG | - | chr1.2:8009580-8009599 | None:intergenic | 60.0% |
| GAGCCCACTGCTCAGCACGA+CGG | - | chr1.2:8011202-8011221 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8007576 | 8011389 | 8007576 | ID=MS.gene016084 |
| chr1.2 | mRNA | 8007576 | 8011389 | 8007576 | ID=MS.gene016084.t1;Parent=MS.gene016084 |
| chr1.2 | exon | 8007576 | 8007789 | 8007576 | ID=MS.gene016084.t1.exon1;Parent=MS.gene016084.t1 |
| chr1.2 | CDS | 8007576 | 8007789 | 8007576 | ID=cds.MS.gene016084.t1;Parent=MS.gene016084.t1 |
| chr1.2 | exon | 8008804 | 8009072 | 8008804 | ID=MS.gene016084.t1.exon2;Parent=MS.gene016084.t1 |
| chr1.2 | CDS | 8008804 | 8009072 | 8008804 | ID=cds.MS.gene016084.t1;Parent=MS.gene016084.t1 |
| chr1.2 | exon | 8010440 | 8010825 | 8010440 | ID=MS.gene016084.t1.exon3;Parent=MS.gene016084.t1 |
| chr1.2 | CDS | 8010440 | 8010825 | 8010440 | ID=cds.MS.gene016084.t1;Parent=MS.gene016084.t1 |
| chr1.2 | exon | 8011058 | 8011257 | 8011058 | ID=MS.gene016084.t1.exon4;Parent=MS.gene016084.t1 |
| chr1.2 | CDS | 8011058 | 8011257 | 8011058 | ID=cds.MS.gene016084.t1;Parent=MS.gene016084.t1 |
| chr1.2 | exon | 8011355 | 8011389 | 8011355 | ID=MS.gene016084.t1.exon5;Parent=MS.gene016084.t1 |
| chr1.2 | CDS | 8011355 | 8011389 | 8011355 | ID=cds.MS.gene016084.t1;Parent=MS.gene016084.t1 |
| Gene Sequence |
| Protein sequence |
