AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016212

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016212.t1 MTR_7g075453 96.667 420 11 2 1 419 1 418 0.0 787
MS.gene016212.t1 MTR_3g460780 45.631 309 165 3 20 326 29 336 2.66e-82 259
MS.gene016212.t1 MTR_5g098420 43.505 331 173 5 5 326 13 338 3.02e-82 259
MS.gene016212.t1 MTR_1g009950 42.857 175 96 2 1 172 1 174 2.23e-40 145
MS.gene016212.t1 MTR_2g437700 32.647 340 211 11 6 330 12 348 9.06e-38 142
MS.gene016212.t1 MTR_1g009940 37.288 177 107 2 1 174 1 176 2.05e-33 127
MS.gene016212.t1 MTR_1g009910 37.288 177 107 2 1 174 1 176 1.42e-32 124
MS.gene016212.t1 MTR_1g009920 36.250 160 96 3 1 155 1 159 7.49e-25 102
MS.gene016212.t1 MTR_2g090765 31.401 207 132 3 160 356 12 218 1.85e-21 93.2
MS.gene016212.t1 MTR_3g108760 30.723 166 110 2 6 171 9 169 3.02e-20 90.1
MS.gene016212.t1 MTR_4g059840 32.222 180 117 2 176 350 66 245 3.35e-20 90.5
MS.gene016212.t1 MTR_5g098060 34.444 180 104 6 182 355 47 218 6.37e-20 89.4
MS.gene016212.t1 MTR_4g059790 31.111 180 119 2 176 350 66 245 1.30e-19 89.0
MS.gene016212.t1 MTR_7g101080 34.177 158 99 3 175 327 32 189 1.35e-19 88.2
MS.gene016212.t1 MTR_4g053380 32.022 178 106 3 176 343 70 242 1.42e-16 80.1
MS.gene016212.t1 MTR_2g017950 33.140 172 91 5 170 325 61 224 3.27e-14 73.2
MS.gene016212.t1 MTR_8g087470 32.571 175 99 5 164 325 74 242 4.73e-14 73.2
MS.gene016212.t1 MTR_8g087460 32.571 175 99 5 164 325 74 242 5.96e-14 72.8
MS.gene016212.t1 MTR_4g059720 29.091 165 100 4 175 327 31 190 7.59e-14 71.2
MS.gene016212.t1 MTR_2g093990 28.758 153 95 3 183 326 41 188 2.15e-12 67.0
MS.gene016212.t1 MTR_8g087450 31.447 159 94 3 174 322 68 221 2.67e-12 67.4
MS.gene016212.t1 MTR_4g059780 30.058 173 104 4 168 328 73 240 3.06e-12 67.4
MS.gene016212.t1 MTR_2g093980 29.825 171 103 4 170 328 54 219 4.72e-11 63.5
MS.gene016212.t1 MTR_2g017970 28.177 181 114 4 183 353 68 242 9.17e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016212.t1 AT3G60900 68.159 402 123 3 9 406 14 414 1.55e-177 502
MS.gene016212.t1 AT2G45470 63.659 410 143 5 11 419 16 420 5.96e-168 478
MS.gene016212.t1 AT4G12730 44.413 358 190 7 5 355 10 365 1.63e-88 274
MS.gene016212.t1 AT5G55730 43.671 316 173 4 16 329 20 332 2.78e-82 259
MS.gene016212.t1 AT5G55730 43.671 316 173 4 16 329 20 332 2.78e-82 259
MS.gene016212.t1 AT3G12660 50.323 155 76 1 14 168 17 170 1.83e-41 147
MS.gene016212.t1 AT2G24450 44.311 167 91 2 6 172 10 174 6.82e-35 130
MS.gene016212.t1 AT3G46550 30.882 340 202 12 22 333 30 364 2.12e-31 124
MS.gene016212.t1 AT4G31370 38.462 169 100 3 18 184 22 188 6.26e-27 109
MS.gene016212.t1 AT5G03170 37.143 175 102 4 175 341 28 202 3.66e-26 106
MS.gene016212.t1 AT2G20520 35.326 184 95 7 174 342 26 200 5.55e-20 89.0
MS.gene016212.t1 AT2G04780 33.117 154 94 4 181 328 44 194 7.84e-19 85.9
MS.gene016212.t1 AT2G04780 33.117 154 94 4 181 328 44 194 7.84e-19 85.9
MS.gene016212.t1 AT5G60490 33.557 149 94 3 183 326 39 187 8.31e-19 85.9
MS.gene016212.t1 AT1G03870 32.836 201 119 8 182 373 38 231 1.72e-17 82.0
MS.gene016212.t1 AT5G44130 31.792 173 101 5 182 342 35 202 3.04e-17 81.3

Find 138 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGATTTGTTTAACGGATT+TGG 0.248067 7.1:+27709091 None:intergenic
TTTGAAAGCTTGGTTAAATC+TGG 0.258664 7.1:+27708837 None:intergenic
GTTAACATCACCGACTTAAA+AGG 0.279170 7.1:-27709170 MS.gene016212:CDS
CAAGCTTTCAAATGCTGAAT+TGG 0.289600 7.1:-27708826 MS.gene016212:CDS
GTTGATTTCGTCGGCGAGTT+TGG 0.289968 7.1:+27709406 None:intergenic
GAGAATTGCTGATACGGTTT+TGG 0.305104 7.1:-27708637 MS.gene016212:CDS
TTTCAATCAACCGCTGATAA+AGG 0.322266 7.1:-27708909 MS.gene016212:CDS
TTTCGTCGGCGAGTTTGGTT+TGG 0.325132 7.1:+27709411 None:intergenic
GGAGAGGAAGGTGTTGTATT+GGG 0.325835 7.1:+27709433 None:intergenic
GGTGTGAACGTGAAAGCTTC+TGG 0.365284 7.1:-27708360 MS.gene016212:CDS
GATGTTGTTGACGGCGTTGC+CGG 0.368716 7.1:+27709199 None:intergenic
GTGTTGTATTGGGAGTAGTC+GGG 0.377757 7.1:+27709443 None:intergenic
CGGTGGAGCGGTGAGGATAC+CGG 0.382681 7.1:+27709025 None:intergenic
GGGAGAGGAAGGTGTTGTAT+TGG 0.383505 7.1:+27709432 None:intergenic
ATTGTAAGGGATTTGTTTAA+CGG 0.389662 7.1:+27709085 None:intergenic
GCTTTAAAAGCTTCATCGTT+CGG 0.391245 7.1:+27708870 None:intergenic
GCCGGAGCCGGAGGCGAAGC+TGG 0.399756 7.1:+27708462 None:intergenic
CAATTCAGCATTTGAAAGCT+TGG 0.401045 7.1:+27708827 None:intergenic
GGTGTTGTATTGGGAGTAGT+CGG 0.404765 7.1:+27709442 None:intergenic
GATAGGGTGGGAGGAGGTGA+TGG 0.411423 7.1:+27709334 None:intergenic
TTCGTCGGCGAGTTTGGTTT+GGG 0.412252 7.1:+27709412 None:intergenic
CGCATCAGCCGGAGCACCAT+CGG 0.416372 7.1:+27708422 None:intergenic
TTCGCCTCCGGCTCCGGCTC+CGG 0.418334 7.1:-27708457 MS.gene016212:CDS
GCCAGCTTCGCCTCCGGCTC+CGG 0.418334 7.1:-27708463 MS.gene016212:CDS
TCGAGGACGGAGATATTGTA+AGG 0.421192 7.1:+27709071 None:intergenic
CGTTGCCGGTGGTTTGGAAG+AGG 0.425548 7.1:+27709213 None:intergenic
GGACTAAGACGGTGATGGTT+TGG 0.426408 7.1:+27709378 None:intergenic
TATTAAAGCGGTGAGGTTAA+CGG 0.427878 7.1:+27708992 None:intergenic
GGGGTTGGAGGAGAGGATTT+CGG 0.428919 7.1:+27709463 None:intergenic
ACTGCGGCGGAGAAGAGTTC+TGG 0.441570 7.1:-27708393 MS.gene016212:CDS
TGACGGCGTTGCCGGTGGTT+TGG 0.446971 7.1:+27709207 None:intergenic
GCAGTCGACGGCGCATCAGC+CGG 0.450836 7.1:+27708411 None:intergenic
GCACCAGCAGGCTCCGGTGC+CGG 0.453273 7.1:+27708540 None:intergenic
GGTGGTTTGGAAGAGGGTGG+TGG 0.455188 7.1:+27709220 None:intergenic
TTGGGAGTAGTCGGGGTTGG+AGG 0.460136 7.1:+27709451 None:intergenic
GTTGCCGGTGGTTTGGAAGA+GGG 0.460606 7.1:+27709214 None:intergenic
GACTTAAAAGGCGGTAAAGT+CGG 0.461657 7.1:-27709158 MS.gene016212:CDS
TACTTCACCTTCTCCGGCAC+CGG 0.462547 7.1:-27708553 MS.gene016212:CDS
AACGGATCCGATGTTGTTGA+CGG 0.462733 7.1:+27709190 None:intergenic
CCTCCGGCTCCGGCTCCGGC+TGG 0.463306 7.1:-27708453 MS.gene016212:CDS
AGAGGATTTCGGTGATGTTG+TGG 0.464601 7.1:+27709474 None:intergenic
GTTTGCTACTTCACCTTCTC+CGG 0.464608 7.1:-27708559 MS.gene016212:CDS
AGTAGTCGAGGAGGACTAAG+AGG 0.470428 7.1:+27709288 None:intergenic
TCTCCGGCACCGGAGCCTGC+TGG 0.471174 7.1:-27708543 MS.gene016212:CDS
GGTGGAGCGGTGAGGATACC+GGG 0.472678 7.1:+27709026 None:intergenic
AGTAGTCGGGGTTGGAGGAG+AGG 0.477034 7.1:+27709456 None:intergenic
GGCGGAGATTGTGGTGGCGA+TGG 0.477900 7.1:+27709496 None:intergenic
GAGGATTTCGGTGATGTTGT+GGG 0.478105 7.1:+27709475 None:intergenic
GTATTGGGAGTAGTCGGGGT+TGG 0.479082 7.1:+27709448 None:intergenic
GGTGGAGAGAGTGGTGCCAT+TGG 0.480599 7.1:+27709238 None:intergenic
GAAGAGGGTGGTGGAGAGAG+TGG 0.485135 7.1:+27709229 None:intergenic
ACCTGCTTCTGCTCCTTCAC+CGG 0.486509 7.1:-27708505 MS.gene016212:CDS
AGTTTAGCTGCAAACGGTGC+CGG 0.490029 7.1:-27708726 MS.gene016212:CDS
TGAGAAGGAGGATGAGAGAG+TGG 0.492390 7.1:+27709525 None:intergenic
ATTTCTAGTTTAGCTGCAAA+CGG 0.494895 7.1:-27708732 MS.gene016212:CDS
TCCATTGCCAGCTTCGCCTC+CGG 0.495146 7.1:-27708469 MS.gene016212:CDS
CGGCGAGTTTGGTTTGGGAG+AGG 0.496272 7.1:+27709417 None:intergenic
GGCTTCGGCTCCGCTGCTCC+CGG 0.499991 7.1:-27709137 MS.gene016212:CDS
GGACTCTCACCAGCCGGAGC+CGG 0.501636 7.1:+27708444 None:intergenic
TCACCAGCCGGAGCCGGAGC+CGG 0.504721 7.1:+27708450 None:intergenic
TGATAGTGTGCTTCTTCCAT+CGG 0.504863 7.1:-27708586 MS.gene016212:CDS
AGCGGTGAGGTTAACGGAGG+AGG 0.505875 7.1:+27708998 None:intergenic
TTCTTCGAGAATTGCTGATA+CGG 0.508193 7.1:-27708643 MS.gene016212:CDS
GCCGGTGAAGGAGCAGAAGC+AGG 0.510054 7.1:+27708504 None:intergenic
GCATCAGCCGGAGCACCATC+GGG 0.511306 7.1:+27708423 None:intergenic
GTCGGTGAAGGAGCACCAGC+AGG 0.511641 7.1:+27708528 None:intergenic
GCAGGCTCCGGTGCCGGAGA+AGG 0.514781 7.1:+27708546 None:intergenic
GAAGGAGCACCAGCAGGCTC+CGG 0.515834 7.1:+27708534 None:intergenic
CTCTTCTCCGCCGCAGTCGA+CGG 0.518732 7.1:+27708399 None:intergenic
AGATGAGTCGAGTTTAGAGC+CGG 0.520592 7.1:+27709118 None:intergenic
AAAGGCGGTAAAGTCGGCTT+CGG 0.521698 7.1:-27709152 MS.gene016212:CDS
CGATGGAGAGGATGAGAAGG+AGG 0.524116 7.1:+27709513 None:intergenic
TTGGCGGGAGTTGATTTCGT+CGG 0.524457 7.1:+27709397 None:intergenic
CGAGGAGGACTAAGAGGGAG+AGG 0.527333 7.1:+27709294 None:intergenic
AAGAGTTCTGGTAAATCTGC+TGG 0.530173 7.1:-27708381 MS.gene016212:CDS
TTAACGGAGGAGGAAGGCGG+TGG 0.530434 7.1:+27709008 None:intergenic
TGGTGCCATTGGTGAGTTGG+TGG 0.531046 7.1:+27709249 None:intergenic
GCCGGAGGCGAAGCTGGCAA+TGG 0.534845 7.1:+27708468 None:intergenic
GAGTTTGGTTTGGGAGAGGA+AGG 0.536198 7.1:+27709421 None:intergenic
TGTAACAGAATCACCGGCAG+TGG 0.540100 7.1:+27708683 None:intergenic
GACGGAGATAGGGTGGGAGG+AGG 0.541655 7.1:+27709328 None:intergenic
CCAGCCGGAGCCGGAGCCGG+AGG 0.542388 7.1:+27708453 None:intergenic
TGAGAGTCCCGATGGTGCTC+CGG 0.544734 7.1:-27708430 MS.gene016212:CDS
GAGTGGTGCCATTGGTGAGT+TGG 0.544988 7.1:+27709246 None:intergenic
TGATCGGAGCTGTGATTTCG+AGG 0.545737 7.1:+27709054 None:intergenic
GCAGAAGCAGGTGTCGGTGA+AGG 0.547162 7.1:+27708516 None:intergenic
CTAAGACGGTGATGGTTTGG+CGG 0.548620 7.1:+27709381 None:intergenic
GCTGCTAAATATCTTCCCAT+TGG 0.550430 7.1:-27708780 MS.gene016212:CDS
TGGCGATGGAGAGGATGAGA+AGG 0.551333 7.1:+27709510 None:intergenic
TGCTTCTGCTCCTTCACCGG+CGG 0.552323 7.1:-27708502 MS.gene016212:CDS
TAAGACGGTGATGGTTTGGC+GGG 0.555575 7.1:+27709382 None:intergenic
GATTACACTGTTACCACTGC+CGG 0.557909 7.1:-27708696 MS.gene016212:CDS
GAGTTTAGAGCCGGGAGCAG+CGG 0.559118 7.1:+27709127 None:intergenic
AGGATACCGGGAGCGATGAT+CGG 0.559985 7.1:+27709038 None:intergenic
GATGTTGTGGGCGGAGATTG+TGG 0.561060 7.1:+27709487 None:intergenic
GCATCGCTTATCTCATCCAA+CGG 0.561376 7.1:-27708945 MS.gene016212:CDS
AAGAGAATGCGGCGTTGTTG+AGG 0.561650 7.1:+27709357 None:intergenic
CCATCGGGACTCTCACCAGC+CGG 0.564675 7.1:+27708438 None:intergenic
CCGGCTGGTGAGAGTCCCGA+TGG 0.565181 7.1:-27708438 MS.gene016212:CDS
TGATGCGCCGTCGACTGCGG+CGG 0.568393 7.1:-27708406 MS.gene016212:CDS
GGAGGAGGAAGGCGGTGGAG+CGG 0.570170 7.1:+27709013 None:intergenic
GTAGGCGCATCCGCCGGTGA+AGG 0.570599 7.1:+27708492 None:intergenic
GGCGAAGCTGGCAATGGAGT+AGG 0.573463 7.1:+27708474 None:intergenic
GGCTGATGCGCCGTCGACTG+CGG 0.575330 7.1:-27708409 MS.gene016212:CDS
ATGAAGTGTAACAGAATCAC+CGG 0.576578 7.1:+27708677 None:intergenic
GAAGTAGCAAACAGCTCCGA+TGG 0.576758 7.1:+27708570 None:intergenic
TGTTGTATTGGGAGTAGTCG+GGG 0.579767 7.1:+27709444 None:intergenic
CGGAGCTGTGATTTCGAGGA+CGG 0.584105 7.1:+27709058 None:intergenic
GTGAGGTTAACGGAGGAGGA+AGG 0.588094 7.1:+27709002 None:intergenic
GTTGAGGACTAAGACGGTGA+TGG 0.588296 7.1:+27709373 None:intergenic
CGAGGACGGAGATATTGTAA+GGG 0.592002 7.1:+27709072 None:intergenic
AATGGAGTAGGCGCATCCGC+CGG 0.593139 7.1:+27708486 None:intergenic
GATGAGTCGAGTTTAGAGCC+GGG 0.594374 7.1:+27709119 None:intergenic
AGGAAGGCGGTGGAGCGGTG+AGG 0.594409 7.1:+27709018 None:intergenic
TCAACAGAGTAAATAGCAAG+AGG 0.595143 7.1:+27708606 None:intergenic
GATTCTGTTACACTTCATAC+CGG 0.596215 7.1:-27708672 MS.gene016212:CDS
TAGTGTTGTCGAAGTAGTCG+AGG 0.598199 7.1:+27709276 None:intergenic
ACCACCCTCTTCCAAACCAC+CGG 0.602359 7.1:-27709218 MS.gene016212:CDS
ACAGCTCCGATCATCGCTCC+CGG 0.603436 7.1:-27709044 MS.gene016212:CDS
GTTGTTGACGGCGTTGCCGG+TGG 0.605559 7.1:+27709202 None:intergenic
AATCGTTAAACCTTTATCAG+CGG 0.607866 7.1:+27708899 None:intergenic
AAACTCCACCAACTCACCAA+TGG 0.611545 7.1:-27709254 MS.gene016212:CDS
TTTGACGACGGAGATAGGGT+GGG 0.613696 7.1:+27709322 None:intergenic
GGCAACGCCGTCAACAACAT+CGG 0.622693 7.1:-27709197 MS.gene016212:CDS
GTAGTCGAGGAGGACTAAGA+GGG 0.625311 7.1:+27709289 None:intergenic
GAAGGAGCAGAAGCAGGTGT+CGG 0.631537 7.1:+27708510 None:intergenic
GCCGGTGGTTTGGAAGAGGG+TGG 0.634462 7.1:+27709217 None:intergenic
GACGACGGAGATAGGGTGGG+AGG 0.635668 7.1:+27709325 None:intergenic
AGATTGTGGTGGCGATGGAG+AGG 0.636808 7.1:+27709501 None:intergenic
GGAGGTGATGGAAGAGAATG+CGG 0.642997 7.1:+27709346 None:intergenic
AGGTTAACGGAGGAGGAAGG+CGG 0.656601 7.1:+27709005 None:intergenic
GATTTCGGTGATGTTGTGGG+CGG 0.675153 7.1:+27709478 None:intergenic
AATTCTCGAAGAATCAACTC+CGG 0.685415 7.1:+27708653 None:intergenic
AACATCACCGACTTAAAAGG+CGG 0.699119 7.1:-27709167 MS.gene016212:CDS
TGTTGTCGAAGTAGTCGAGG+AGG 0.701272 7.1:+27709279 None:intergenic
GTTGTGGGCGGAGATTGTGG+TGG 0.702975 7.1:+27709490 None:intergenic
GGCGTTGTTGAGGACTAAGA+CGG 0.713613 7.1:+27709367 None:intergenic
TAAAGCGGTGAGGTTAACGG+AGG 0.741946 7.1:+27708995 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGTGTAATCAAATTTTC+CGG + chr7.1:27709125-27709144 None:intergenic 25.0%
!! ATTGTAAGGGATTTGTTTAA+CGG + chr7.1:27708747-27708766 None:intergenic 25.0%
AATCGTTAAACCTTTATCAG+CGG + chr7.1:27708933-27708952 None:intergenic 30.0%
TTTGAAAGCTTGGTTAAATC+TGG + chr7.1:27708995-27709014 None:intergenic 30.0%
! GTAGTTTTCAAAGATCCAAT+GGG + chr7.1:27709067-27709086 None:intergenic 30.0%
!! ATTTCTAGTTTAGCTGCAAA+CGG - chr7.1:27709097-27709116 MS.gene016212:CDS 30.0%
!! TTTTAAGTCGGTGATGTTAA+CGG + chr7.1:27708660-27708679 None:intergenic 30.0%
!!! AAACGTTTTGATTAAACCGT+TGG + chr7.1:27708903-27708922 None:intergenic 30.0%
!!! GATGAAGCTTTTAAAGCTAA+AGG - chr7.1:27708965-27708984 MS.gene016212:CDS 30.0%
AATTCTCGAAGAATCAACTC+CGG + chr7.1:27709179-27709198 None:intergenic 35.0%
ACCGCTTTAATAGAAAAAGC+CGG - chr7.1:27708848-27708867 MS.gene016212:CDS 35.0%
ATGAAGTGTAACAGAATCAC+CGG + chr7.1:27709155-27709174 None:intergenic 35.0%
CAAGCTTTCAAATGCTGAAT+TGG - chr7.1:27709003-27709022 MS.gene016212:CDS 35.0%
CAATTCAGCATTTGAAAGCT+TGG + chr7.1:27709005-27709024 None:intergenic 35.0%
GATTCTGTTACACTTCATAC+CGG - chr7.1:27709157-27709176 MS.gene016212:CDS 35.0%
TATTAAAGCGGTGAGGTTAA+CGG + chr7.1:27708840-27708859 None:intergenic 35.0%
TCAACAGAGTAAATAGCAAG+AGG + chr7.1:27709226-27709245 None:intergenic 35.0%
TTCTTCGAGAATTGCTGATA+CGG - chr7.1:27709186-27709205 MS.gene016212:CDS 35.0%
TTTCAATCAACCGCTGATAA+AGG - chr7.1:27708920-27708939 MS.gene016212:CDS 35.0%
! CGTAGTTTTCAAAGATCCAA+TGG + chr7.1:27709068-27709087 None:intergenic 35.0%
! CTTTTTCTATTAAAGCGGTG+AGG + chr7.1:27708847-27708866 None:intergenic 35.0%
!! ACCGGCTTTTTCTATTAAAG+CGG + chr7.1:27708852-27708871 None:intergenic 35.0%
!! AGGGATTTGTTTAACGGATT+TGG + chr7.1:27708741-27708760 None:intergenic 35.0%
!! GCTTTAAAAGCTTCATCGTT+CGG + chr7.1:27708962-27708981 None:intergenic 35.0%
!! GTTAACATCACCGACTTAAA+AGG - chr7.1:27708659-27708678 MS.gene016212:CDS 35.0%
!!! ATTTTTTTGACGACGGAGAT+AGG + chr7.1:27708515-27708534 None:intergenic 35.0%
!!! TTTTTTTGACGACGGAGATA+GGG + chr7.1:27708514-27708533 None:intergenic 35.0%
GACTTAAAAGGCGGTAAAGT+CGG - chr7.1:27708671-27708690 MS.gene016212:CDS 40.0%
GCTGCTAAATATCTTCCCAT+TGG - chr7.1:27709049-27709068 MS.gene016212:CDS 40.0%
! AAGAGTTCTGGTAAATCTGC+TGG - chr7.1:27709448-27709467 MS.gene016212:CDS 40.0%
! CGATGCAAATGTTTTGCAAC+CGG + chr7.1:27708870-27708889 None:intergenic 40.0%
! GAGAATTGCTGATACGGTTT+TGG - chr7.1:27709192-27709211 MS.gene016212:CDS 40.0%
! TGATAGTGTGCTTCTTCCAT+CGG - chr7.1:27709243-27709262 MS.gene016212:CDS 40.0%
!! AACATCACCGACTTAAAAGG+CGG - chr7.1:27708662-27708681 MS.gene016212:CDS 40.0%
!! GACTTTACCGCCTTTTAAGT+CGG + chr7.1:27708672-27708691 None:intergenic 40.0%
!!! GGAGAGGATTTTTTTGACGA+CGG + chr7.1:27708522-27708541 None:intergenic 40.0%
AAACTCCACCAACTCACCAA+TGG - chr7.1:27708575-27708594 MS.gene016212:CDS 45.0%
AACGGATCCGATGTTGTTGA+CGG + chr7.1:27708642-27708661 None:intergenic 45.0%
AGAGGATTTCGGTGATGTTG+TGG + chr7.1:27708358-27708377 None:intergenic 45.0%
CGAGGACGGAGATATTGTAA+GGG + chr7.1:27708760-27708779 None:intergenic 45.0%
GAGGATTTCGGTGATGTTGT+GGG + chr7.1:27708357-27708376 None:intergenic 45.0%
GATTACACTGTTACCACTGC+CGG - chr7.1:27709133-27709152 MS.gene016212:CDS 45.0%
GCATCGCTTATCTCATCCAA+CGG - chr7.1:27708884-27708903 MS.gene016212:CDS 45.0%
GTGTTGTATTGGGAGTAGTC+GGG + chr7.1:27708389-27708408 None:intergenic 45.0%
TAGTGTTGTCGAAGTAGTCG+AGG + chr7.1:27708556-27708575 None:intergenic 45.0%
TCGAGGACGGAGATATTGTA+AGG + chr7.1:27708761-27708780 None:intergenic 45.0%
TGTTGTATTGGGAGTAGTCG+GGG + chr7.1:27708388-27708407 None:intergenic 45.0%
! AGATGAGTCGAGTTTAGAGC+CGG + chr7.1:27708714-27708733 None:intergenic 45.0%
! GGTGTTGTATTGGGAGTAGT+CGG + chr7.1:27708390-27708409 None:intergenic 45.0%
! GTTTGCTACTTCACCTTCTC+CGG - chr7.1:27709270-27709289 MS.gene016212:CDS 45.0%
!! GACTGCTTTGTCTGCTTTTG+TGG - chr7.1:27709510-27709529 MS.gene016212:CDS 45.0%
!! GGAGAGGAAGGTGTTGTATT+GGG + chr7.1:27708399-27708418 None:intergenic 45.0%
AAGAGAATGCGGCGTTGTTG+AGG + chr7.1:27708475-27708494 None:intergenic 50.0%
AGTAGTCGAGGAGGACTAAG+AGG + chr7.1:27708544-27708563 None:intergenic 50.0%
AGTTTAGCTGCAAACGGTGC+CGG - chr7.1:27709103-27709122 MS.gene016212:CDS 50.0%
GAAGTAGCAAACAGCTCCGA+TGG + chr7.1:27709262-27709281 None:intergenic 50.0%
GATTTCGGTGATGTTGTGGG+CGG + chr7.1:27708354-27708373 None:intergenic 50.0%
GGCGTTGTTGAGGACTAAGA+CGG + chr7.1:27708465-27708484 None:intergenic 50.0%
GGTGTGAACGTGAAAGCTTC+TGG - chr7.1:27709469-27709488 MS.gene016212:CDS 50.0%
GTAGTCGAGGAGGACTAAGA+GGG + chr7.1:27708543-27708562 None:intergenic 50.0%
GTTGAGGACTAAGACGGTGA+TGG + chr7.1:27708459-27708478 None:intergenic 50.0%
TAAAGCGGTGAGGTTAACGG+AGG + chr7.1:27708837-27708856 None:intergenic 50.0%
TGAGAAGGAGGATGAGAGAG+TGG + chr7.1:27708307-27708326 None:intergenic 50.0%
TGATCGGAGCTGTGATTTCG+AGG + chr7.1:27708778-27708797 None:intergenic 50.0%
TGTAACAGAATCACCGGCAG+TGG + chr7.1:27709149-27709168 None:intergenic 50.0%
TGTTGTCGAAGTAGTCGAGG+AGG + chr7.1:27708553-27708572 None:intergenic 50.0%
TTTCGTCGGCGAGTTTGGTT+TGG + chr7.1:27708421-27708440 None:intergenic 50.0%
TTTGACGACGGAGATAGGGT+GGG + chr7.1:27708510-27708529 None:intergenic 50.0%
! AAAGGCGGTAAAGTCGGCTT+CGG - chr7.1:27708677-27708696 MS.gene016212:CDS 50.0%
! CTAAGACGGTGATGGTTTGG+CGG + chr7.1:27708451-27708470 None:intergenic 50.0%
! GATGAGTCGAGTTTAGAGCC+GGG + chr7.1:27708713-27708732 None:intergenic 50.0%
! GGACTAAGACGGTGATGGTT+TGG + chr7.1:27708454-27708473 None:intergenic 50.0%
! GTTGATTTCGTCGGCGAGTT+TGG + chr7.1:27708426-27708445 None:intergenic 50.0%
! TAAGACGGTGATGGTTTGGC+GGG + chr7.1:27708450-27708469 None:intergenic 50.0%
! TTCGTCGGCGAGTTTGGTTT+GGG + chr7.1:27708420-27708439 None:intergenic 50.0%
! TTGGCGGGAGTTGATTTCGT+CGG + chr7.1:27708435-27708454 None:intergenic 50.0%
! TTTTGACGACGGAGATAGGG+TGG + chr7.1:27708511-27708530 None:intergenic 50.0%
!! GAGTTTGGTTTGGGAGAGGA+AGG + chr7.1:27708411-27708430 None:intergenic 50.0%
!! GGAGGTGATGGAAGAGAATG+CGG + chr7.1:27708486-27708505 None:intergenic 50.0%
!! GGGAGAGGAAGGTGTTGTAT+TGG + chr7.1:27708400-27708419 None:intergenic 50.0%
ACCACCCTCTTCCAAACCAC+CGG - chr7.1:27708611-27708630 MS.gene016212:CDS 55.0%
ACCTGCTTCTGCTCCTTCAC+CGG - chr7.1:27709324-27709343 MS.gene016212:CDS 55.0%
AGGATACCGGGAGCGATGAT+CGG + chr7.1:27708794-27708813 None:intergenic 55.0%
AGGTTAACGGAGGAGGAAGG+CGG + chr7.1:27708827-27708846 None:intergenic 55.0%
CGATGGAGAGGATGAGAAGG+AGG + chr7.1:27708319-27708338 None:intergenic 55.0%
CGGAGCTGTGATTTCGAGGA+CGG + chr7.1:27708774-27708793 None:intergenic 55.0%
GAAGGAGCAGAAGCAGGTGT+CGG + chr7.1:27709322-27709341 None:intergenic 55.0%
GATGTTGTGGGCGGAGATTG+TGG + chr7.1:27708345-27708364 None:intergenic 55.0%
GATGTTGTTGACGGCGTTGC+CGG + chr7.1:27708633-27708652 None:intergenic 55.0%
GGCAACGCCGTCAACAACAT+CGG - chr7.1:27708632-27708651 MS.gene016212:CDS 55.0%
GGGGTTGGAGGAGAGGATTT+CGG + chr7.1:27708369-27708388 None:intergenic 55.0%
GTATTGGGAGTAGTCGGGGT+TGG + chr7.1:27708384-27708403 None:intergenic 55.0%
GTGAGGTTAACGGAGGAGGA+AGG + chr7.1:27708830-27708849 None:intergenic 55.0%
TACTTCACCTTCTCCGGCAC+CGG - chr7.1:27709276-27709295 MS.gene016212:CDS 55.0%
TGGCGATGGAGAGGATGAGA+AGG + chr7.1:27708322-27708341 None:intergenic 55.0%
! AGATTGTGGTGGCGATGGAG+AGG + chr7.1:27708331-27708350 None:intergenic 55.0%
! GTTGCCGGTGGTTTGGAAGA+GGG + chr7.1:27708618-27708637 None:intergenic 55.0%
!! GAGTGGTGCCATTGGTGAGT+TGG + chr7.1:27708586-27708605 None:intergenic 55.0%
!! TGGTGCCATTGGTGAGTTGG+TGG + chr7.1:27708583-27708602 None:intergenic 55.0%
AATGGAGTAGGCGCATCCGC+CGG + chr7.1:27709346-27709365 None:intergenic 60.0%
ACAGCTCCGATCATCGCTCC+CGG - chr7.1:27708785-27708804 MS.gene016212:CDS 60.0%
ACTGCGGCGGAGAAGAGTTC+TGG - chr7.1:27709436-27709455 MS.gene016212:CDS 60.0%
AGCGGTGAGGTTAACGGAGG+AGG + chr7.1:27708834-27708853 None:intergenic 60.0%
AGTAGTCGGGGTTGGAGGAG+AGG + chr7.1:27708376-27708395 None:intergenic 60.0%
CGAGGAGGACTAAGAGGGAG+AGG + chr7.1:27708538-27708557 None:intergenic 60.0%
GATAGGGTGGGAGGAGGTGA+TGG + chr7.1:27708498-27708517 None:intergenic 60.0%
GGCGAAGCTGGCAATGGAGT+AGG + chr7.1:27709358-27709377 None:intergenic 60.0%
GTTGTGGGCGGAGATTGTGG+TGG + chr7.1:27708342-27708361 None:intergenic 60.0%
TCCATTGCCAGCTTCGCCTC+CGG - chr7.1:27709360-27709379 MS.gene016212:CDS 60.0%
TGAGAGTCCCGATGGTGCTC+CGG - chr7.1:27709399-27709418 MS.gene016212:CDS 60.0%
TGCTTCTGCTCCTTCACCGG+CGG - chr7.1:27709327-27709346 MS.gene016212:CDS 60.0%
TTAACGGAGGAGGAAGGCGG+TGG + chr7.1:27708824-27708843 None:intergenic 60.0%
TTGGGAGTAGTCGGGGTTGG+AGG + chr7.1:27708381-27708400 None:intergenic 60.0%
! CGTTGCCGGTGGTTTGGAAG+AGG + chr7.1:27708619-27708638 None:intergenic 60.0%
! GAGTTTAGAGCCGGGAGCAG+CGG + chr7.1:27708705-27708724 None:intergenic 60.0%
! GGTGGTTTGGAAGAGGGTGG+TGG + chr7.1:27708612-27708631 None:intergenic 60.0%
!! CGGCGAGTTTGGTTTGGGAG+AGG + chr7.1:27708415-27708434 None:intergenic 60.0%
!! GAAGAGGGTGGTGGAGAGAG+TGG + chr7.1:27708603-27708622 None:intergenic 60.0%
!! GCAGAAGCAGGTGTCGGTGA+AGG + chr7.1:27709316-27709335 None:intergenic 60.0%
!! GGTGGAGAGAGTGGTGCCAT+TGG + chr7.1:27708594-27708613 None:intergenic 60.0%
CCATCGGGACTCTCACCAGC+CGG + chr7.1:27709394-27709413 None:intergenic 65.0%
CGGTGGAGCGGTGAGGATAC+CGG + chr7.1:27708807-27708826 None:intergenic 65.0%
CTCTTCTCCGCCGCAGTCGA+CGG + chr7.1:27709433-27709452 None:intergenic 65.0%
GACGACGGAGATAGGGTGGG+AGG + chr7.1:27708507-27708526 None:intergenic 65.0%
GACGGAGATAGGGTGGGAGG+AGG + chr7.1:27708504-27708523 None:intergenic 65.0%
GCCGGTGAAGGAGCAGAAGC+AGG + chr7.1:27709328-27709347 None:intergenic 65.0%
GGTGGAGCGGTGAGGATACC+GGG + chr7.1:27708806-27708825 None:intergenic 65.0%
GTTGTTGACGGCGTTGCCGG+TGG + chr7.1:27708630-27708649 None:intergenic 65.0%
TGACGGCGTTGCCGGTGGTT+TGG + chr7.1:27708625-27708644 None:intergenic 65.0%
! CGCATCAGCCGGAGCACCAT+CGG + chr7.1:27709410-27709429 None:intergenic 65.0%
! GCATCAGCCGGAGCACCATC+GGG + chr7.1:27709409-27709428 None:intergenic 65.0%
! GCCGGTGGTTTGGAAGAGGG+TGG + chr7.1:27708615-27708634 None:intergenic 65.0%
! GGCGGAGATTGTGGTGGCGA+TGG + chr7.1:27708336-27708355 None:intergenic 65.0%
!! GAAGGAGCACCAGCAGGCTC+CGG + chr7.1:27709298-27709317 None:intergenic 65.0%
!! GTCGGTGAAGGAGCACCAGC+AGG + chr7.1:27709304-27709323 None:intergenic 65.0%
AGGAAGGCGGTGGAGCGGTG+AGG + chr7.1:27708814-27708833 None:intergenic 70.0%
CCGGCTGGTGAGAGTCCCGA+TGG - chr7.1:27709391-27709410 MS.gene016212:CDS 70.0%
GCAGTCGACGGCGCATCAGC+CGG + chr7.1:27709421-27709440 None:intergenic 70.0%
GCCGGAGGCGAAGCTGGCAA+TGG + chr7.1:27709364-27709383 None:intergenic 70.0%
GGACTCTCACCAGCCGGAGC+CGG + chr7.1:27709388-27709407 None:intergenic 70.0%
GGAGGAGGAAGGCGGTGGAG+CGG + chr7.1:27708819-27708838 None:intergenic 70.0%
GTAGGCGCATCCGCCGGTGA+AGG + chr7.1:27709340-27709359 None:intergenic 70.0%
! GGCTGATGCGCCGTCGACTG+CGG - chr7.1:27709420-27709439 MS.gene016212:CDS 70.0%
! TGATGCGCCGTCGACTGCGG+CGG - chr7.1:27709423-27709442 MS.gene016212:CDS 70.0%
GCACCAGCAGGCTCCGGTGC+CGG + chr7.1:27709292-27709311 None:intergenic 75.0%
GCCAGCTTCGCCTCCGGCTC+CGG - chr7.1:27709366-27709385 MS.gene016212:CDS 75.0%
GGCTTCGGCTCCGCTGCTCC+CGG - chr7.1:27708692-27708711 MS.gene016212:CDS 75.0%
TCACCAGCCGGAGCCGGAGC+CGG + chr7.1:27709382-27709401 None:intergenic 75.0%
TTCGCCTCCGGCTCCGGCTC+CGG - chr7.1:27709372-27709391 MS.gene016212:CDS 75.0%
! GCAGGCTCCGGTGCCGGAGA+AGG + chr7.1:27709286-27709305 None:intergenic 75.0%
! TCTCCGGCACCGGAGCCTGC+TGG - chr7.1:27709286-27709305 MS.gene016212:CDS 75.0%
! GCCGGAGCCGGAGGCGAAGC+TGG + chr7.1:27709370-27709389 None:intergenic 80.0%
! CCAGCCGGAGCCGGAGCCGG+AGG + chr7.1:27709379-27709398 None:intergenic 85.0%
! CCTCCGGCTCCGGCTCCGGC+TGG - chr7.1:27709376-27709395 MS.gene016212:CDS 85.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 27708296 27709555 27708296 ID=MS.gene016212
chr7.1 mRNA 27708296 27709555 27708296 ID=MS.gene016212.t1;Parent=MS.gene016212
chr7.1 exon 27708296 27709555 27708296 ID=MS.gene016212.t1.exon1;Parent=MS.gene016212.t1
chr7.1 CDS 27708296 27709555 27708296 ID=cds.MS.gene016212.t1;Parent=MS.gene016212.t1
Gene Sequence

>MS.gene016212

ATGGGTCACCACTCTCTCATCCTCCTTCTCATCCTCTCCATCGCCACCACAATCTCCGCCCACAACATCACCGAAATCCTCTCCTCCAACCCCGACTACTCCCAATACAACACCTTCCTCTCCCAAACCAAACTCGCCGACGAAATCAACTCCCGCCAAACCATCACCGTCTTAGTCCTCAACAACGCCGCATTCTCTTCCATCACCTCCTCCCACCCTATCTCCGTCGTCAAAAAAATCCTCTCCCTCTTAGTCCTCCTCGACTACTTCGACAACACTAAACTCCACCAACTCACCAATGGCACCACTCTCTCCACCACCCTCTTCCAAACCACCGGCAACGCCGTCAACAACATCGGATCCGTTAACATCACCGACTTAAAAGGCGGTAAAGTCGGCTTCGGCTCCGCTGCTCCCGGCTCTAAACTCGACTCATCTTACTCCAAATCCGTTAAACAAATCCCTTACAATATCTCCGTCCTCGAAATCACAGCTCCGATCATCGCTCCCGGTATCCTCACCGCTCCACCGCCTTCCTCCTCCGTTAACCTCACCGCTTTAATAGAAAAAGCCGGTTGCAAAACATTTGCATCGCTTATCTCATCCAACGGTTTAATCAAAACGTTTCAATCAACCGCTGATAAAGGTTTAACGATTTTTGCTCCGAACGATGAAGCTTTTAAAGCTAAAGGTGTTCCAGATTTAACCAAGCTTTCAAATGCTGAATTGGTTTCACTTTTACAGTATCATGCTGCTGCTAAATATCTTCCCATTGGATCTTTGAAAACTACGAAAGACGCTATTTCTAGTTTAGCTGCAAACGGTGCCGGAAAATTTGATTACACTGTTACCACTGCCGGTGATTCTGTTACACTTCATACCGGAGTTGATTCTTCGAGAATTGCTGATACGGTTTTGGATTCTACTCCTCTTGCTATTTACTCTGTTGATAGTGTGCTTCTTCCATCGGAGCTGTTTGCTACTTCACCTTCTCCGGCACCGGAGCCTGCTGGTGCTCCTTCACCGACACCTGCTTCTGCTCCTTCACCGGCGGATGCGCCTACTCCATTGCCAGCTTCGCCTCCGGCTCCGGCTCCGGCTGGTGAGAGTCCCGATGGTGCTCCGGCTGATGCGCCGTCGACTGCGGCGGAGAAGAGTTCTGGTAAATCTGCTGGTGTGAACGTGAAAGCTTCTGGTGTTTTTACTGTTGCAGTGACTGCTTTGTCTGCTTTTGTGGTTTCGTTTGTTTTTATGTCTTGA
Protein sequence

>MS.gene016212.t1

MGHHSLILLLILSIATTISAHNITEILSSNPDYSQYNTFLSQTKLADEINSRQTITVLVLNNAAFSSITSSHPISVVKKILSLLVLLDYFDNTKLHQLTNGTTLSTTLFQTTGNAVNNIGSVNITDLKGGKVGFGSAAPGSKLDSSYSKSVKQIPYNISVLEITAPIIAPGILTAPPPSSSVNLTALIEKAGCKTFASLISSNGLIKTFQSTADKGLTIFAPNDEAFKAKGVPDLTKLSNAELVSLLQYHAAAKYLPIGSLKTTKDAISSLAANGAGKFDYTVTTAGDSVTLHTGVDSSRIADTVLDSTPLAIYSVDSVLLPSELFATSPSPAPEPAGAPSPTPASAPSPADAPTPLPASPPAPAPAGESPDGAPADAPSTAAEKSSGKSAGVNVKASGVFTVAVTALSAFVVSFVFMS