Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016513.t1 | XP_024628675.1 | 97.1 | 411 | 12 | 0 | 1 | 411 | 1 | 411 | 1.20E-229 | 805.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016513.t1 | Q8L518 | 66.7 | 342 | 111 | 2 | 21 | 362 | 7 | 345 | 2.8e-134 | 479.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016513.t1 | G7LIC4 | 96.6 | 411 | 12 | 1 | 1 | 411 | 1 | 409 | 3.1e-227 | 797.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016513 | MS.gene83346 | PPI |
| MS.gene57514 | MS.gene016513 | PPI |
| MS.gene016513 | MS.gene27633 | PPI |
| MS.gene016513 | MS.gene50958 | PPI |
| MS.gene016513 | MS.gene52160 | PPI |
| MS.gene016513 | MS.gene045848 | PPI |
| MS.gene016513 | MS.gene038844 | PPI |
| MS.gene42220 | MS.gene016513 | PPI |
| MS.gene016513 | MS.gene58299 | PPI |
| MS.gene016513 | MS.gene019492 | PPI |
| MS.gene016513 | MS.gene36871 | PPI |
| MS.gene016513 | MS.gene067354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016513.t1 | MTR_8g041330 | 96.594 | 411 | 12 | 1 | 1 | 411 | 1 | 409 | 0.0 | 821 |
| MS.gene016513.t1 | MTR_3g013430 | 72.704 | 392 | 102 | 2 | 19 | 410 | 113 | 499 | 0.0 | 592 |
| MS.gene016513.t1 | MTR_1g097850 | 59.887 | 354 | 118 | 4 | 36 | 384 | 16 | 350 | 5.14e-154 | 439 |
| MS.gene016513.t1 | MTR_6g039820 | 61.280 | 328 | 126 | 1 | 36 | 362 | 16 | 343 | 1.11e-152 | 436 |
| MS.gene016513.t1 | MTR_1g097850 | 61.290 | 248 | 81 | 2 | 36 | 282 | 16 | 249 | 1.16e-108 | 320 |
| MS.gene016513.t1 | MTR_6g040230 | 64.159 | 226 | 81 | 0 | 137 | 362 | 271 | 496 | 1.18e-104 | 318 |
| MS.gene016513.t1 | MTR_2g054370 | 34.756 | 328 | 199 | 6 | 41 | 362 | 48 | 366 | 1.55e-55 | 188 |
| MS.gene016513.t1 | MTR_8g041220 | 89.247 | 93 | 9 | 1 | 257 | 349 | 40 | 131 | 3.22e-53 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016513.t1 | AT1G74320 | 67.781 | 329 | 106 | 0 | 34 | 362 | 17 | 345 | 4.80e-174 | 490 |
| MS.gene016513.t1 | AT1G71697 | 62.006 | 329 | 123 | 2 | 35 | 361 | 16 | 344 | 3.83e-155 | 442 |
| MS.gene016513.t1 | AT4G09760 | 59.394 | 330 | 131 | 3 | 35 | 362 | 14 | 342 | 2.34e-150 | 430 |
| MS.gene016513.t1 | AT4G09760 | 59.394 | 330 | 131 | 3 | 35 | 362 | 14 | 342 | 2.34e-150 | 430 |
| MS.gene016513.t1 | AT4G09760 | 54.502 | 211 | 93 | 3 | 35 | 243 | 14 | 223 | 5.25e-80 | 247 |
| MS.gene016513.t1 | AT4G09760 | 53.061 | 196 | 89 | 3 | 35 | 228 | 14 | 208 | 5.02e-71 | 223 |
| MS.gene016513.t1 | AT2G26830 | 35.692 | 325 | 192 | 7 | 40 | 357 | 45 | 359 | 1.75e-55 | 187 |
Find 78 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAGTTATTCCTCTTAA+AGG | 0.171522 | 8.2:+59619417 | MS.gene016513:CDS |
| TGAAATCATTAGCAAATAAA+TGG | 0.176333 | 8.2:+59619370 | MS.gene016513:CDS |
| ATCATGGAACTCCTTCATTT+TGG | 0.209327 | 8.2:-59620378 | None:intergenic |
| CACTTGCAAGTCATCTCTTA+TGG | 0.223466 | 8.2:+59621376 | MS.gene016513:CDS |
| GGACAAAGAAATCTCTCTTT+TGG | 0.232703 | 8.2:+59620633 | MS.gene016513:CDS |
| TTCCCAAAGGTACACATTCT+TGG | 0.254559 | 8.2:-59620417 | None:intergenic |
| GTCATCTCTTATGGGGCCTT+TGG | 0.259535 | 8.2:+59621385 | MS.gene016513:CDS |
| TCATCTCTTATGGGGCCTTT+GGG | 0.283838 | 8.2:+59621386 | MS.gene016513:CDS |
| ATGAGGTATTCCAGATAAAA+TGG | 0.287632 | 8.2:+59619451 | MS.gene016513:CDS |
| TGCCACAATGATTTACAATA+TGG | 0.290864 | 8.2:+59620694 | MS.gene016513:CDS |
| AAGGTTCTTGTTAGAATCTA+TGG | 0.326658 | 8.2:+59619501 | MS.gene016513:CDS |
| TGGAAGTTATTCCTCTTAAA+GGG | 0.343200 | 8.2:+59619418 | MS.gene016513:CDS |
| GGGCCTTTGGGGAATCGTTT+CGG | 0.345679 | 8.2:+59621398 | MS.gene016513:CDS |
| ATGAAACATCTCAACTTCTT+CGG | 0.351016 | 8.2:-59620599 | None:intergenic |
| TCCCATGATAATGTTATTGC+TGG | 0.356929 | 8.2:+59621649 | MS.gene016513:CDS |
| AATAGATGGATCGCGCATAT+CGG | 0.365704 | 8.2:-59620339 | None:intergenic |
| TGAAACATCTCAACTTCTTC+GGG | 0.370184 | 8.2:-59620598 | None:intergenic |
| GTTCCAAGAATGTGTACCTT+TGG | 0.371856 | 8.2:+59620414 | MS.gene016513:CDS |
| ACTTGCAAGTCATCTCTTAT+GGG | 0.383444 | 8.2:+59621377 | MS.gene016513:CDS |
| CAGACATATTTGAGCTCATC+TGG | 0.386208 | 8.2:+59621089 | MS.gene016513:CDS |
| TGTACCTTTGGGAAAGATTA+CGG | 0.391573 | 8.2:+59620426 | MS.gene016513:CDS |
| TTCCAAGAATGTGTACCTTT+GGG | 0.399002 | 8.2:+59620415 | MS.gene016513:CDS |
| ATAGATGGATCGCGCATATC+GGG | 0.423467 | 8.2:-59620338 | None:intergenic |
| GTCAAGAATATGTGGAGTTT+CGG | 0.423578 | 8.2:-59620941 | None:intergenic |
| TTCTTCAACTTCCTGGAGAT+AGG | 0.429362 | 8.2:-59621833 | None:intergenic |
| TACCAGCAATAACATTATCA+TGG | 0.450420 | 8.2:-59621651 | None:intergenic |
| TTTGCTATATCATATGCAAC+TGG | 0.459381 | 8.2:-59620886 | None:intergenic |
| GCTATAAGAGCAGAAATAGA+TGG | 0.462638 | 8.2:-59620353 | None:intergenic |
| AAATAAATGGGAAAATGTAT+TGG | 0.463368 | 8.2:+59619383 | MS.gene016513:CDS |
| TTGCGCGGATGAACTCTTCA+AGG | 0.464612 | 8.2:-59619632 | None:intergenic |
| TTGGTCATTGCCCCTTTAAG+AGG | 0.472910 | 8.2:-59619429 | None:intergenic |
| AGGGACCTCGTTTGCTAGGA+AGG | 0.472952 | 8.2:+59619595 | MS.gene016513:CDS |
| GAAATCATTAGCAAATAAAT+GGG | 0.476701 | 8.2:+59619371 | MS.gene016513:CDS |
| AACAAAGGTTTCAAGAGTAC+TGG | 0.478778 | 8.2:+59621590 | MS.gene016513:CDS |
| TTCGCATTCATCTCAAAGAA+TGG | 0.478784 | 8.2:+59619570 | MS.gene016513:CDS |
| GCTTCTCTTGATAGATTTGG+CGG | 0.486121 | 8.2:+59621049 | MS.gene016513:intron |
| CGGTAACTCCTCAACGCATA+GGG | 0.494288 | 8.2:+59620668 | MS.gene016513:CDS |
| ACTTGCAGGGGAGGAAGCAT+TGG | 0.497221 | 8.2:+59621775 | MS.gene016513:intron |
| TTATCATGGGAAGATCCATT+AGG | 0.500062 | 8.2:-59621637 | None:intergenic |
| TTCCATGATCTTGACATGCC+AGG | 0.504711 | 8.2:+59620392 | MS.gene016513:CDS |
| CTTGACTATAGTAAATATCC+TGG | 0.505967 | 8.2:+59620958 | MS.gene016513:CDS |
| GGACAGGGACCTCGTTTGCT+AGG | 0.522828 | 8.2:+59619591 | MS.gene016513:CDS |
| TTACTATAGTCAAGAATATG+TGG | 0.524731 | 8.2:-59620949 | None:intergenic |
| ATTCATCTCAAAGAATGGAC+AGG | 0.529382 | 8.2:+59619575 | MS.gene016513:CDS |
| CAAAGAGCACTCCTATCTCC+AGG | 0.531818 | 8.2:+59621822 | MS.gene016513:CDS |
| AGAAGGTGAAGTGTCAAGAA+AGG | 0.543617 | 8.2:+59619482 | MS.gene016513:CDS |
| CATCTCTTATGGGGCCTTTG+GGG | 0.546550 | 8.2:+59621387 | MS.gene016513:CDS |
| TTGCAGCCATCTCAGAGAAG+TGG | 0.546892 | 8.2:-59620909 | None:intergenic |
| GATAATGTTATTGCTGGTAA+TGG | 0.548592 | 8.2:+59621655 | MS.gene016513:CDS |
| TCGGTAACTCCTCAACGCAT+AGG | 0.548774 | 8.2:+59620667 | MS.gene016513:CDS |
| AACCTGGCATGTCAAGATCA+TGG | 0.549382 | 8.2:-59620394 | None:intergenic |
| CTTGTTAGAATCTATGGTGA+AGG | 0.550047 | 8.2:+59619507 | MS.gene016513:CDS |
| TCTTATAGCCTCCAAAATGA+AGG | 0.550643 | 8.2:+59620367 | MS.gene016513:CDS |
| AGCAAACCACTTCTCTGAGA+TGG | 0.561547 | 8.2:+59620903 | MS.gene016513:CDS |
| ATAAAATGGCAAACAACAGA+AGG | 0.566959 | 8.2:+59619465 | MS.gene016513:CDS |
| TGCTGCACTTCATTATCACT+AGG | 0.567718 | 8.2:-59621327 | None:intergenic |
| TGTATTGGATGCAAATGCGT+TGG | 0.569064 | 8.2:+59619398 | MS.gene016513:CDS |
| AGGTACACATTCTTGGAACC+TGG | 0.569593 | 8.2:-59620410 | None:intergenic |
| TTGCTAGGAAGGTTTGCTCA+AGG | 0.570025 | 8.2:+59619606 | MS.gene016513:CDS |
| GATGTTTCATTTGAACACAA+TGG | 0.571971 | 8.2:+59620612 | MS.gene016513:CDS |
| GACATTGGCTTATTGAAGCG+AGG | 0.572887 | 8.2:+59620563 | MS.gene016513:intron |
| ACCAGCAATAACATTATCAT+GGG | 0.577959 | 8.2:-59621650 | None:intergenic |
| TTGAAGAGTTCATCCGCGCA+AGG | 0.578128 | 8.2:+59619634 | MS.gene016513:CDS |
| TACCATATTGTAAATCATTG+TGG | 0.610437 | 8.2:-59620696 | None:intergenic |
| GGAAGTTATTCCTCTTAAAG+GGG | 0.616043 | 8.2:+59619419 | MS.gene016513:CDS |
| GGTTTCAAGAGTACTGGTCA+AGG | 0.622972 | 8.2:+59621596 | MS.gene016513:CDS |
| TGAAGAGTTCATCCGCGCAA+GGG | 0.628101 | 8.2:+59619635 | MS.gene016513:CDS |
| TGGCAAAACCCTATGCGTTG+AGG | 0.633836 | 8.2:-59620676 | None:intergenic |
| TTCATCTCAAAGAATGGACA+GGG | 0.638399 | 8.2:+59619576 | MS.gene016513:CDS |
| AACATCTCAACTTCTTCGGG+TGG | 0.639965 | 8.2:-59620595 | None:intergenic |
| CTTGCAAGTCATCTCTTATG+GGG | 0.644065 | 8.2:+59621378 | MS.gene016513:CDS |
| ACAAGGAGTATGCAAAACAA+AGG | 0.657049 | 8.2:+59621575 | MS.gene016513:CDS |
| TAAAGGGGCAATGACCAATG+AGG | 0.662217 | 8.2:+59619434 | MS.gene016513:CDS |
| ATACCGAAACGATTCCCCAA+AGG | 0.667454 | 8.2:-59621401 | None:intergenic |
| AGTGCAGCAACTACTCGATG+AGG | 0.692096 | 8.2:+59621341 | MS.gene016513:CDS |
| CATACCGTAATCTTTCCCAA+AGG | 0.702589 | 8.2:-59620430 | None:intergenic |
| AAGGCAATACTACCCTTGCG+CGG | 0.704621 | 8.2:-59619647 | None:intergenic |
| GCAAACCTTCCTAGCAAACG+AGG | 0.716835 | 8.2:-59619600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGTATGTTAAATAAA+AGG | - | chr8.2:59621158-59621177 | None:intergenic | 10.0% |
| !!! | TATTAAAATTTTACTTTGAA+AGG | + | chr8.2:59620134-59620153 | MS.gene016513:intron | 10.0% |
| !!! | TTTCAAAGTAAAATTTTAAT+AGG | - | chr8.2:59620135-59620154 | None:intergenic | 10.0% |
| !!! | AGTTCATTTTTAAAGTTTTA+AGG | - | chr8.2:59620036-59620055 | None:intergenic | 15.0% |
| !!! | TAACATACATAAATCTTTTA+TGG | + | chr8.2:59621164-59621183 | MS.gene016513:intron | 15.0% |
| !! | AAAAGGAACAATAAAATACA+TGG | + | chr8.2:59621205-59621224 | MS.gene016513:intron | 20.0% |
| !! | AAATAAATGGGAAAATGTAT+TGG | + | chr8.2:59619383-59619402 | MS.gene016513:CDS | 20.0% |
| !! | ATATTAAAGATTGTGTTACA+TGG | + | chr8.2:59621130-59621149 | MS.gene016513:intron | 20.0% |
| !! | ATGTAACACAATCTTTAATA+TGG | - | chr8.2:59621131-59621150 | None:intergenic | 20.0% |
| !! | ATTTCATTCTAAATCATGTT+TGG | - | chr8.2:59619834-59619853 | None:intergenic | 20.0% |
| !! | CAATAACAAATATTCTCAAA+AGG | - | chr8.2:59619715-59619734 | None:intergenic | 20.0% |
| !! | GAAATCATTAGCAAATAAAT+GGG | + | chr8.2:59619371-59619390 | MS.gene016513:CDS | 20.0% |
| !! | TAATTCCATTTACATCAAAT+TGG | + | chr8.2:59621730-59621749 | MS.gene016513:intron | 20.0% |
| !! | TGAAATCATTAGCAAATAAA+TGG | + | chr8.2:59619370-59619389 | MS.gene016513:CDS | 20.0% |
| !! | TGAACAAACAATGAAAAAAA+AGG | - | chr8.2:59619669-59619688 | None:intergenic | 20.0% |
| !!! | AACTTTTTGTTTTTCAGAAA+AGG | + | chr8.2:59621188-59621207 | MS.gene016513:intron | 20.0% |
| !!! | ATCTATGCAAAGTTTTATTT+TGG | - | chr8.2:59619802-59619821 | None:intergenic | 20.0% |
| !!! | TTAAAATGTACTTTTGTAAC+AGG | + | chr8.2:59620840-59620859 | MS.gene016513:intron | 20.0% |
| ! | AAAAAATTTCTTCAACTTCC+TGG | - | chr8.2:59621843-59621862 | None:intergenic | 25.0% |
| ! | AAATATTCTCAAAAGGCTTT+AGG | - | chr8.2:59619708-59619727 | None:intergenic | 25.0% |
| ! | CCTATGTTCAAAATATATGA+AGG | - | chr8.2:59621467-59621486 | None:intergenic | 25.0% |
| ! | GCATAAAAGTAATTCTTGAA+TGG | - | chr8.2:59621025-59621044 | None:intergenic | 25.0% |
| ! | GTTCAAAATATATGAAGGTT+AGG | - | chr8.2:59621462-59621481 | None:intergenic | 25.0% |
| ! | TACCATATTGTAAATCATTG+TGG | - | chr8.2:59620699-59620718 | None:intergenic | 25.0% |
| ! | TAGTTTAGATAAGACAATAG+AGG | - | chr8.2:59621506-59621525 | None:intergenic | 25.0% |
| ! | TATGTTAATGATTCAGACAT+TGG | + | chr8.2:59620548-59620567 | MS.gene016513:intron | 25.0% |
| ! | TGGCATTAAATGTAATATTG+AGG | + | chr8.2:59621699-59621718 | MS.gene016513:intron | 25.0% |
| ! | TGTTCTCATAATGCAATTAT+TGG | + | chr8.2:59621284-59621303 | MS.gene016513:intron | 25.0% |
| ! | TTACTATAGTCAAGAATATG+TGG | - | chr8.2:59620952-59620971 | None:intergenic | 25.0% |
| !! | ATTATTGTTATTGTCAGACT+TGG | + | chr8.2:59619748-59619767 | MS.gene016513:intron | 25.0% |
| !! | TACTGACATTTTCTTTGATA+GGG | + | chr8.2:59619530-59619549 | MS.gene016513:CDS | 25.0% |
| !!! | AGGAAGTTGAAGAAATTTTT+TGG | + | chr8.2:59621842-59621861 | MS.gene016513:CDS | 25.0% |
| !!! | CAAAATTGATTTTGACTACA+AGG | + | chr8.2:59621558-59621577 | MS.gene016513:CDS | 25.0% |
| !!! | CCTTCATATATTTTGAACAT+AGG | + | chr8.2:59621464-59621483 | MS.gene016513:intron | 25.0% |
| !!! | TTGAAGAAATTTTTTGGTCT+TGG | + | chr8.2:59621848-59621867 | MS.gene016513:CDS | 25.0% |
| AAGGTTCTTGTTAGAATCTA+TGG | + | chr8.2:59619501-59619520 | MS.gene016513:CDS | 30.0% | |
| ACCAACCAATTTGATGTAAA+TGG | - | chr8.2:59621738-59621757 | None:intergenic | 30.0% | |
| ACCAGCAATAACATTATCAT+GGG | - | chr8.2:59621653-59621672 | None:intergenic | 30.0% | |
| ATAAAATGGCAAACAACAGA+AGG | + | chr8.2:59619465-59619484 | MS.gene016513:CDS | 30.0% | |
| ATAGTAAATATCCTGGTATG+CGG | + | chr8.2:59620965-59620984 | MS.gene016513:intron | 30.0% | |
| ATCTTCACAATACTTTGTTC+AGG | + | chr8.2:59621525-59621544 | MS.gene016513:intron | 30.0% | |
| ATGAAACATCTCAACTTCTT+CGG | - | chr8.2:59620602-59620621 | None:intergenic | 30.0% | |
| CTTGACTATAGTAAATATCC+TGG | + | chr8.2:59620958-59620977 | MS.gene016513:CDS | 30.0% | |
| GATAATGTTATTGCTGGTAA+TGG | + | chr8.2:59621655-59621674 | MS.gene016513:CDS | 30.0% | |
| GATGTTTCATTTGAACACAA+TGG | + | chr8.2:59620612-59620631 | MS.gene016513:CDS | 30.0% | |
| TACCAGCAATAACATTATCA+TGG | - | chr8.2:59621654-59621673 | None:intergenic | 30.0% | |
| TCCATTTACATCAAATTGGT+TGG | + | chr8.2:59621734-59621753 | MS.gene016513:intron | 30.0% | |
| TGCCACAATGATTTACAATA+TGG | + | chr8.2:59620694-59620713 | MS.gene016513:CDS | 30.0% | |
| TGGAAGTTATTCCTCTTAAA+GGG | + | chr8.2:59619418-59619437 | MS.gene016513:CDS | 30.0% | |
| TTCTAAATCATGTTTGGCAA+AGG | - | chr8.2:59619828-59619847 | None:intergenic | 30.0% | |
| TTCTTGAATGGATACAACAA+AGG | - | chr8.2:59621013-59621032 | None:intergenic | 30.0% | |
| TTGGAAGTTATTCCTCTTAA+AGG | + | chr8.2:59619417-59619436 | MS.gene016513:CDS | 30.0% | |
| ! | AATATCTCTTTTGCTTCATC+TGG | - | chr8.2:59619351-59619370 | None:intergenic | 30.0% |
| ! | ACTATTTTATAATTGCCCTC+GGG | + | chr8.2:59619922-59619941 | MS.gene016513:intron | 30.0% |
| ! | ATGAGGTATTCCAGATAAAA+TGG | + | chr8.2:59619451-59619470 | MS.gene016513:CDS | 30.0% |
| ! | GACTATTTTATAATTGCCCT+CGG | + | chr8.2:59619921-59619940 | MS.gene016513:intron | 30.0% |
| ! | TGCAAGTCAATTTTAGACTT+AGG | - | chr8.2:59621762-59621781 | None:intergenic | 30.0% |
| ! | TTTGCTATATCATATGCAAC+TGG | - | chr8.2:59620889-59620908 | None:intergenic | 30.0% |
| !! | AAGTCTAAAATTGACTTGCA+GGG | + | chr8.2:59621762-59621781 | MS.gene016513:intron | 30.0% |
| !! | AATCATCTTTTGAGTCCTAA+TGG | + | chr8.2:59621622-59621641 | MS.gene016513:CDS | 30.0% |
| !! | AGAAATCTCTCTTTTGGAAA+AGG | + | chr8.2:59620639-59620658 | MS.gene016513:CDS | 30.0% |
| !! | GTACTGACATTTTCTTTGAT+AGG | + | chr8.2:59619529-59619548 | MS.gene016513:CDS | 30.0% |
| !! | TAAGTCTAAAATTGACTTGC+AGG | + | chr8.2:59621761-59621780 | MS.gene016513:intron | 30.0% |
| !! | TCTTTTGGAAAAGGAATTGT+CGG | + | chr8.2:59620648-59620667 | MS.gene016513:CDS | 30.0% |
| !! | TGGTTGGTGAATTGAAATTT+AGG | + | chr8.2:59619768-59619787 | MS.gene016513:intron | 30.0% |
| !! | TTTTATCTGGAATACCTCAT+TGG | - | chr8.2:59619451-59619470 | None:intergenic | 30.0% |
| !!! | CAATTATTGGTTTTGAACTC+AGG | + | chr8.2:59621297-59621316 | MS.gene016513:intron | 30.0% |
| AAATAAGCGCATTGGAACAA+TGG | + | chr8.2:59621679-59621698 | MS.gene016513:intron | 35.0% | |
| ACTTGCAAGTCATCTCTTAT+GGG | + | chr8.2:59621377-59621396 | MS.gene016513:CDS | 35.0% | |
| ATTCATCTCAAAGAATGGAC+AGG | + | chr8.2:59619575-59619594 | MS.gene016513:CDS | 35.0% | |
| CTTGTTAGAATCTATGGTGA+AGG | + | chr8.2:59619507-59619526 | MS.gene016513:CDS | 35.0% | |
| GCTATAAGAGCAGAAATAGA+TGG | - | chr8.2:59620356-59620375 | None:intergenic | 35.0% | |
| GGAAGTTATTCCTCTTAAAG+GGG | + | chr8.2:59619419-59619438 | MS.gene016513:CDS | 35.0% | |
| GTAATGGTAAATAAGCGCAT+TGG | + | chr8.2:59621671-59621690 | MS.gene016513:intron | 35.0% | |
| GTCAAGAATATGTGGAGTTT+CGG | - | chr8.2:59620944-59620963 | None:intergenic | 35.0% | |
| TATGCTAACAAGTGTCCTTA+CGG | - | chr8.2:59620111-59620130 | None:intergenic | 35.0% | |
| TCTGCTTCTCTTGATAGATT+TGG | + | chr8.2:59621046-59621065 | MS.gene016513:intron | 35.0% | |
| TCTTATAGCCTCCAAAATGA+AGG | + | chr8.2:59620367-59620386 | MS.gene016513:CDS | 35.0% | |
| TGAAACATCTCAACTTCTTC+GGG | - | chr8.2:59620601-59620620 | None:intergenic | 35.0% | |
| TTATCATGGGAAGATCCATT+AGG | - | chr8.2:59621640-59621659 | None:intergenic | 35.0% | |
| TTCATCTCAAAGAATGGACA+GGG | + | chr8.2:59619576-59619595 | MS.gene016513:CDS | 35.0% | |
| TTCCAAGAATGTGTACCTTT+GGG | + | chr8.2:59620415-59620434 | MS.gene016513:CDS | 35.0% | |
| TTCGCATTCATCTCAAAGAA+TGG | + | chr8.2:59619570-59619589 | MS.gene016513:CDS | 35.0% | |
| TTTCTTAACAAGTGCCCTAA+GGG | - | chr8.2:59619972-59619991 | None:intergenic | 35.0% | |
| ! | AACAAAGGTTTCAAGAGTAC+TGG | + | chr8.2:59621590-59621609 | MS.gene016513:CDS | 35.0% |
| ! | ACAAGGAGTATGCAAAACAA+AGG | + | chr8.2:59621575-59621594 | MS.gene016513:CDS | 35.0% |
| ! | ATCATGGAACTCCTTCATTT+TGG | - | chr8.2:59620381-59620400 | None:intergenic | 35.0% |
| ! | GCACAAAGTAGCTTTTACAT+TGG | - | chr8.2:59620198-59620217 | None:intergenic | 35.0% |
| ! | GGACAAAGAAATCTCTCTTT+TGG | + | chr8.2:59620633-59620652 | MS.gene016513:CDS | 35.0% |
| ! | TCCCATGATAATGTTATTGC+TGG | + | chr8.2:59621649-59621668 | MS.gene016513:CDS | 35.0% |
| ! | TGTACCTTTGGGAAAGATTA+CGG | + | chr8.2:59620426-59620445 | MS.gene016513:CDS | 35.0% |
| ! | TTGTTATTGTCAGACTTGGT+TGG | + | chr8.2:59619752-59619771 | MS.gene016513:intron | 35.0% |
| !! | AGTCTAAAATTGACTTGCAG+GGG | + | chr8.2:59621763-59621782 | MS.gene016513:intron | 35.0% |
| !!! | CTGTTGTTTGCCATTTTATC+TGG | - | chr8.2:59619464-59619483 | None:intergenic | 35.0% |
| AAATGTTAGCAAGTGCCCTT+AGG | + | chr8.2:59619954-59619973 | MS.gene016513:intron | 40.0% | |
| AATAGATGGATCGCGCATAT+CGG | - | chr8.2:59620342-59620361 | None:intergenic | 40.0% | |
| AATGTTAGCAAGTGCCCTTA+GGG | + | chr8.2:59619955-59619974 | MS.gene016513:intron | 40.0% | |
| ATAATTGCCCTCGGGAAAAT+TGG | + | chr8.2:59619930-59619949 | MS.gene016513:intron | 40.0% | |
| CACTTGCAAGTCATCTCTTA+TGG | + | chr8.2:59621376-59621395 | MS.gene016513:CDS | 40.0% | |
| CAGACATATTTGAGCTCATC+TGG | + | chr8.2:59621089-59621108 | MS.gene016513:CDS | 40.0% | |
| CATACCGTAATCTTTCCCAA+AGG | - | chr8.2:59620433-59620452 | None:intergenic | 40.0% | |
| CGTTCTTAACTAATGCCGTA+AGG | + | chr8.2:59620093-59620112 | MS.gene016513:intron | 40.0% | |
| CTTGCAAGTCATCTCTTATG+GGG | + | chr8.2:59621378-59621397 | MS.gene016513:CDS | 40.0% | |
| GCTTCTCTTGATAGATTTGG+CGG | + | chr8.2:59621049-59621068 | MS.gene016513:intron | 40.0% | |
| GTTCCAAGAATGTGTACCTT+TGG | + | chr8.2:59620414-59620433 | MS.gene016513:CDS | 40.0% | |
| GTTTCTTAACAAGTGCCCTA+AGG | - | chr8.2:59619973-59619992 | None:intergenic | 40.0% | |
| TAATTGCCCTCGGGAAAATT+GGG | + | chr8.2:59619931-59619950 | MS.gene016513:intron | 40.0% | |
| TGCTGCACTTCATTATCACT+AGG | - | chr8.2:59621330-59621349 | None:intergenic | 40.0% | |
| TGTATTGGATGCAAATGCGT+TGG | + | chr8.2:59619398-59619417 | MS.gene016513:CDS | 40.0% | |
| TTCTTCAACTTCCTGGAGAT+AGG | - | chr8.2:59621836-59621855 | None:intergenic | 40.0% | |
| ! | AACATTTCCCAATTTTCCCG+AGG | - | chr8.2:59619941-59619960 | None:intergenic | 40.0% |
| ! | ACATTTCCCAATTTTCCCGA+GGG | - | chr8.2:59619940-59619959 | None:intergenic | 40.0% |
| ! | AGAAGGTGAAGTGTCAAGAA+AGG | + | chr8.2:59619482-59619501 | MS.gene016513:CDS | 40.0% |
| ! | ATGGAACTCCTTCATTTTGG+AGG | - | chr8.2:59620378-59620397 | None:intergenic | 40.0% |
| ! | GAGAAATTTTACCGCATACC+AGG | - | chr8.2:59620979-59620998 | None:intergenic | 40.0% |
| ! | TTCCCAAAGGTACACATTCT+TGG | - | chr8.2:59620420-59620439 | None:intergenic | 40.0% |
| AACATCTCAACTTCTTCGGG+TGG | - | chr8.2:59620598-59620617 | None:intergenic | 45.0% | |
| AACCTGGCATGTCAAGATCA+TGG | - | chr8.2:59620397-59620416 | None:intergenic | 45.0% | |
| AGGTACACATTCTTGGAACC+TGG | - | chr8.2:59620413-59620432 | None:intergenic | 45.0% | |
| ATACCGAAACGATTCCCCAA+AGG | - | chr8.2:59621404-59621423 | None:intergenic | 45.0% | |
| ATAGATGGATCGCGCATATC+GGG | - | chr8.2:59620341-59620360 | None:intergenic | 45.0% | |
| TAAAGGGGCAATGACCAATG+AGG | + | chr8.2:59619434-59619453 | MS.gene016513:CDS | 45.0% | |
| TCATCTCTTATGGGGCCTTT+GGG | + | chr8.2:59621386-59621405 | MS.gene016513:CDS | 45.0% | |
| TTCCATGATCTTGACATGCC+AGG | + | chr8.2:59620392-59620411 | MS.gene016513:CDS | 45.0% | |
| TTGGTCATTGCCCCTTTAAG+AGG | - | chr8.2:59619432-59619451 | None:intergenic | 45.0% | |
| ! | AGCAAACCACTTCTCTGAGA+TGG | + | chr8.2:59620903-59620922 | MS.gene016513:CDS | 45.0% |
| ! | TTGCTAGGAAGGTTTGCTCA+AGG | + | chr8.2:59619606-59619625 | MS.gene016513:CDS | 45.0% |
| !! | CTAAAATTGACTTGCAGGGG+AGG | + | chr8.2:59621766-59621785 | MS.gene016513:intron | 45.0% |
| !! | GACATTGGCTTATTGAAGCG+AGG | + | chr8.2:59620563-59620582 | MS.gene016513:intron | 45.0% |
| !! | GGTTTCAAGAGTACTGGTCA+AGG | + | chr8.2:59621596-59621615 | MS.gene016513:CDS | 45.0% |
| AAGGCAATACTACCCTTGCG+CGG | - | chr8.2:59619650-59619669 | None:intergenic | 50.0% | |
| AGTGCAGCAACTACTCGATG+AGG | + | chr8.2:59621341-59621360 | MS.gene016513:CDS | 50.0% | |
| CATCTCTTATGGGGCCTTTG+GGG | + | chr8.2:59621387-59621406 | MS.gene016513:CDS | 50.0% | |
| CGGTAACTCCTCAACGCATA+GGG | + | chr8.2:59620668-59620687 | MS.gene016513:CDS | 50.0% | |
| GCAAACCTTCCTAGCAAACG+AGG | - | chr8.2:59619603-59619622 | None:intergenic | 50.0% | |
| GTCATCTCTTATGGGGCCTT+TGG | + | chr8.2:59621385-59621404 | MS.gene016513:CDS | 50.0% | |
| TCGGTAACTCCTCAACGCAT+AGG | + | chr8.2:59620667-59620686 | MS.gene016513:CDS | 50.0% | |
| TGAAGAGTTCATCCGCGCAA+GGG | + | chr8.2:59619635-59619654 | MS.gene016513:CDS | 50.0% | |
| TGGCAAAACCCTATGCGTTG+AGG | - | chr8.2:59620679-59620698 | None:intergenic | 50.0% | |
| TTGAAGAGTTCATCCGCGCA+AGG | + | chr8.2:59619634-59619653 | MS.gene016513:CDS | 50.0% | |
| TTGCAGCCATCTCAGAGAAG+TGG | - | chr8.2:59620912-59620931 | None:intergenic | 50.0% | |
| TTGCGCGGATGAACTCTTCA+AGG | - | chr8.2:59619635-59619654 | None:intergenic | 50.0% | |
| !! | CAAAGAGCACTCCTATCTCC+AGG | + | chr8.2:59621822-59621841 | MS.gene016513:CDS | 50.0% |
| ! | ACTTGCAGGGGAGGAAGCAT+TGG | + | chr8.2:59621775-59621794 | MS.gene016513:intron | 55.0% |
| ! | AGGGACCTCGTTTGCTAGGA+AGG | + | chr8.2:59619595-59619614 | MS.gene016513:CDS | 55.0% |
| ! | GGGCCTTTGGGGAATCGTTT+CGG | + | chr8.2:59621398-59621417 | MS.gene016513:CDS | 55.0% |
| GGACAGGGACCTCGTTTGCT+AGG | + | chr8.2:59619591-59619610 | MS.gene016513:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 59619246 | 59621892 | 59619246 | ID=MS.gene016513 |
| chr8.2 | mRNA | 59619246 | 59621892 | 59619246 | ID=MS.gene016513.t1;Parent=MS.gene016513 |
| chr8.2 | exon | 59619246 | 59619656 | 59619246 | ID=MS.gene016513.t1.exon1;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59619246 | 59619656 | 59619246 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59620326 | 59620447 | 59620326 | ID=MS.gene016513.t1.exon2;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59620326 | 59620447 | 59620326 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59620564 | 59620759 | 59620564 | ID=MS.gene016513.t1.exon3;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59620564 | 59620759 | 59620564 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59620862 | 59620979 | 59620862 | ID=MS.gene016513.t1.exon4;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59620862 | 59620979 | 59620862 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59621063 | 59621110 | 59621063 | ID=MS.gene016513.t1.exon5;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59621063 | 59621110 | 59621063 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59621319 | 59621419 | 59621319 | ID=MS.gene016513.t1.exon6;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59621319 | 59621419 | 59621319 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59621547 | 59621676 | 59621547 | ID=MS.gene016513.t1.exon7;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59621547 | 59621676 | 59621547 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| chr8.2 | exon | 59621783 | 59621892 | 59621783 | ID=MS.gene016513.t1.exon8;Parent=MS.gene016513.t1 |
| chr8.2 | CDS | 59621783 | 59621892 | 59621783 | ID=cds.MS.gene016513.t1;Parent=MS.gene016513.t1 |
| Gene Sequence |
| Protein sequence |
