Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016641.t1 | XP_003627775.1 | 97 | 233 | 7 | 0 | 1 | 233 | 82 | 314 | 1.10E-120 | 442.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016641.t1 | Q9ZVJ6 | 60.3 | 234 | 89 | 3 | 1 | 231 | 85 | 317 | 3.1e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016641.t1 | G7LF83 | 97.0 | 233 | 7 | 0 | 1 | 233 | 82 | 314 | 8.3e-121 | 442.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45772 | MS.gene016641 | PPI |
| MS.gene056195 | MS.gene016641 | PPI |
| MS.gene016642 | MS.gene016641 | PPI |
| MS.gene016641 | MS.gene92405 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016641.t1 | MTR_8g038170 | 96.996 | 233 | 7 | 0 | 1 | 233 | 82 | 314 | 1.50e-165 | 459 |
| MS.gene016641.t1 | MTR_8g038170 | 96.996 | 233 | 7 | 0 | 1 | 233 | 82 | 314 | 1.50e-165 | 459 |
| MS.gene016641.t1 | MTR_5g063670 | 44.033 | 243 | 116 | 6 | 1 | 230 | 77 | 312 | 6.37e-54 | 176 |
| MS.gene016641.t1 | MTR_2g031980 | 42.259 | 239 | 121 | 6 | 1 | 230 | 81 | 311 | 1.20e-49 | 165 |
| MS.gene016641.t1 | MTR_8g038220 | 41.004 | 239 | 126 | 6 | 1 | 231 | 80 | 311 | 3.93e-47 | 158 |
| MS.gene016641.t1 | MTR_8g038220 | 41.004 | 239 | 126 | 6 | 1 | 231 | 81 | 312 | 4.49e-47 | 158 |
| MS.gene016641.t1 | MTR_3g018780 | 39.749 | 239 | 129 | 6 | 1 | 231 | 81 | 312 | 1.06e-45 | 154 |
| MS.gene016641.t1 | MTR_3g018790 | 39.749 | 239 | 129 | 6 | 1 | 231 | 27 | 258 | 1.65e-45 | 152 |
| MS.gene016641.t1 | MTR_8g038150 | 38.174 | 241 | 131 | 6 | 3 | 232 | 84 | 317 | 2.08e-45 | 154 |
| MS.gene016641.t1 | MTR_3g018790 | 39.749 | 239 | 129 | 6 | 1 | 231 | 81 | 312 | 4.44e-45 | 153 |
| MS.gene016641.t1 | MTR_8g038180 | 41.667 | 240 | 125 | 6 | 1 | 232 | 81 | 313 | 8.00e-45 | 152 |
| MS.gene016641.t1 | MTR_0276s0050 | 40.167 | 239 | 128 | 5 | 1 | 231 | 82 | 313 | 4.72e-42 | 145 |
| MS.gene016641.t1 | MTR_8g038210 | 39.749 | 239 | 128 | 6 | 1 | 231 | 81 | 311 | 3.49e-41 | 143 |
| MS.gene016641.t1 | MTR_8g038210 | 39.749 | 239 | 128 | 6 | 1 | 231 | 81 | 311 | 5.29e-41 | 142 |
| MS.gene016641.t1 | MTR_6g071605 | 36.493 | 211 | 122 | 4 | 27 | 230 | 107 | 312 | 7.70e-32 | 118 |
| MS.gene016641.t1 | MTR_1g033560 | 32.083 | 240 | 140 | 6 | 3 | 230 | 84 | 312 | 1.35e-30 | 115 |
| MS.gene016641.t1 | MTR_8g107640 | 34.034 | 238 | 143 | 6 | 1 | 230 | 81 | 312 | 3.64e-29 | 111 |
| MS.gene016641.t1 | MTR_6g071615 | 34.468 | 235 | 141 | 5 | 3 | 230 | 84 | 312 | 1.20e-26 | 105 |
| MS.gene016641.t1 | MTR_1g112520 | 35.545 | 211 | 124 | 5 | 27 | 230 | 107 | 312 | 1.43e-26 | 104 |
| MS.gene016641.t1 | MTR_6g071595 | 32.766 | 235 | 145 | 5 | 3 | 230 | 84 | 312 | 3.01e-26 | 103 |
| MS.gene016641.t1 | MTR_6g028030 | 28.692 | 237 | 152 | 7 | 3 | 228 | 77 | 307 | 1.46e-20 | 88.6 |
| MS.gene016641.t1 | MTR_3g018920 | 45.161 | 93 | 47 | 1 | 40 | 132 | 88 | 176 | 4.29e-16 | 73.9 |
| MS.gene016641.t1 | MTR_6g071595 | 27.485 | 171 | 113 | 3 | 3 | 166 | 84 | 250 | 3.32e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016641.t1 | AT2G38750 | 60.256 | 234 | 89 | 3 | 1 | 231 | 68 | 300 | 1.40e-97 | 287 |
| MS.gene016641.t1 | AT2G38750 | 60.256 | 234 | 89 | 3 | 1 | 231 | 85 | 317 | 1.59e-97 | 287 |
| MS.gene016641.t1 | AT1G35720 | 44.351 | 239 | 117 | 6 | 1 | 230 | 82 | 313 | 1.23e-55 | 180 |
| MS.gene016641.t1 | AT5G12380 | 41.250 | 240 | 126 | 5 | 1 | 232 | 81 | 313 | 6.47e-51 | 168 |
| MS.gene016641.t1 | AT5G10230 | 43.697 | 238 | 119 | 5 | 1 | 230 | 82 | 312 | 9.19e-50 | 165 |
| MS.gene016641.t1 | AT5G10220 | 43.750 | 240 | 118 | 7 | 1 | 230 | 82 | 314 | 8.92e-49 | 162 |
| MS.gene016641.t1 | AT5G65020 | 40.664 | 241 | 127 | 5 | 1 | 232 | 67 | 300 | 6.94e-48 | 160 |
| MS.gene016641.t1 | AT5G65020 | 40.833 | 240 | 128 | 4 | 1 | 232 | 82 | 315 | 8.28e-48 | 160 |
| MS.gene016641.t1 | AT2G38760 | 37.603 | 242 | 130 | 6 | 3 | 230 | 84 | 318 | 1.19e-39 | 139 |
| MS.gene016641.t1 | AT1G68090 | 31.197 | 234 | 147 | 5 | 5 | 230 | 86 | 313 | 7.89e-33 | 121 |
| MS.gene016641.t1 | AT1G68090 | 30.952 | 168 | 106 | 3 | 5 | 165 | 86 | 250 | 4.95e-21 | 88.6 |
Find 47 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCATCATCCTCATTAAT+TGG | 0.192814 | 8.2:+61732976 | None:intergenic |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8.2:+61733949 | None:intergenic |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8.2:+61733950 | None:intergenic |
| GCTGAGTATAATAAGTTATA+TGG | 0.307727 | 8.2:-61732314 | MS.gene016641:CDS |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8.2:-61732904 | MS.gene016641:CDS |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8.2:+61733017 | None:intergenic |
| GAAAGGATCTTAATGACTTA+AGG | 0.324871 | 8.2:-61732610 | MS.gene016641:intron |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8.2:+61733068 | None:intergenic |
| ATGAGGATGATGAAGTAATA+AGG | 0.366290 | 8.2:-61732969 | MS.gene016641:CDS |
| AAGAACTTCAGAGGAACTAT+TGG | 0.389710 | 8.2:-61733898 | MS.gene016641:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8.2:-61732336 | MS.gene016641:CDS |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8.2:-61732962 | MS.gene016641:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8.2:+61733005 | None:intergenic |
| TTACCTTTCTATCATTGCCA+TGG | 0.452976 | 8.2:+61733811 | None:intergenic |
| TGCTATGGAGCATGCACCCT+TGG | 0.463181 | 8.2:-61734001 | None:intergenic |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8.2:-61733945 | MS.gene016641:CDS |
| CAGAGGAACTATTGGGAGCT+AGG | 0.478123 | 8.2:-61733890 | MS.gene016641:CDS |
| AAAATTGAAGAGACTGCTAA+AGG | 0.486337 | 8.2:-61732275 | MS.gene016641:CDS |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8.2:+61733839 | None:intergenic |
| AGATGCTCGTTTAGCAAAAG+AGG | 0.495545 | 8.2:-61733973 | MS.gene016641:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.496277 | 8.2:-61733814 | MS.gene016641:intron |
| TTAGCCTCCTCTAGCAATCA+AGG | 0.503479 | 8.2:+61732229 | None:intergenic |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8.2:-61732345 | MS.gene016641:CDS |
| AGAACTTCAGAGGAACTATT+GGG | 0.510234 | 8.2:-61733897 | MS.gene016641:CDS |
| GCAAAAGAGGCCCTAAAGAA+AGG | 0.511238 | 8.2:-61733960 | MS.gene016641:CDS |
| AAATTGAAGAGACTGCTAAA+GGG | 0.525725 | 8.2:-61732274 | MS.gene016641:CDS |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8.2:-61733075 | MS.gene016641:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8.2:+61733844 | None:intergenic |
| GGAACTATTGGGAGCTAGGA+AGG | 0.530013 | 8.2:-61733886 | MS.gene016641:CDS |
| TTGCTAACCTTGATTGCTAG+AGG | 0.531913 | 8.2:-61732236 | MS.gene016641:CDS |
| TGGAATGGTCAAAGAGGGAA+TGG | 0.539898 | 8.2:+61733859 | None:intergenic |
| GCTATGGAGCATGCACCCTT+GGG | 0.551765 | 8.2:-61734000 | None:intergenic |
| TCAAAAGAAGCCAATTAATG+AGG | 0.568367 | 8.2:-61732986 | MS.gene016641:CDS |
| TTCAATGGAATGGTCAAAGA+GGG | 0.569593 | 8.2:+61733854 | None:intergenic |
| AATATACTTGTGGAGTACAA+AGG | 0.574763 | 8.2:+61732567 | None:intergenic |
| AAACGAGCATCTCTTTCCCA+AGG | 0.576706 | 8.2:+61733984 | None:intergenic |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8.2:-61733828 | MS.gene016641:CDS |
| CTTCAATGGAATGGTCAAAG+AGG | 0.586864 | 8.2:+61733853 | None:intergenic |
| ACCTTGCTAAAATATACTTG+TGG | 0.592183 | 8.2:+61732557 | None:intergenic |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8.2:-61732887 | MS.gene016641:intron |
| GACTGCTAAAGGGAACTACA+AGG | 0.615438 | 8.2:-61732264 | MS.gene016641:CDS |
| AGATGAAACTGCAAAATCAG+AGG | 0.624947 | 8.2:-61733040 | MS.gene016641:CDS |
| TGCAGCATTGAAAATTGATG+TGG | 0.633610 | 8.2:-61732408 | MS.gene016641:CDS |
| CTAACCTTGATTGCTAGAGG+AGG | 0.643976 | 8.2:-61732233 | MS.gene016641:CDS |
| AACGAGCATCTCTTTCCCAA+GGG | 0.648474 | 8.2:+61733985 | None:intergenic |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8.2:-61733067 | MS.gene016641:CDS |
| TGCATGCACAAGAACTTCAG+AGG | 0.660802 | 8.2:-61733907 | MS.gene016641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATATGTAAATATTGTAT+TGG | - | chr8.2:61732972-61732991 | MS.gene016641:CDS | 15.0% |
| !! | TTCAAATAATAAATAAGAGA+GGG | + | chr8.2:61733070-61733089 | None:intergenic | 15.0% |
| !! | TTTCAAATAATAAATAAGAG+AGG | + | chr8.2:61733071-61733090 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTACCTTTTGAA+AGG | - | chr8.2:61733592-61733611 | MS.gene016641:intron | 15.0% |
| !!! | TGTTTTTATTTTTTGTACAT+AGG | - | chr8.2:61733781-61733800 | MS.gene016641:intron | 15.0% |
| !! | AATTTGCATAAACACTTATT+AGG | - | chr8.2:61733508-61733527 | MS.gene016641:intron | 20.0% |
| !! | GTGAATTAGTATTGTTTATA+TGG | - | chr8.2:61733035-61733054 | MS.gene016641:CDS | 20.0% |
| !!! | AATTCCATGGTTTTAAATTA+TGG | - | chr8.2:61732491-61732510 | MS.gene016641:intron | 20.0% |
| !!! | GTTAGATTTCAAAGTTTTTT+AGG | - | chr8.2:61733013-61733032 | MS.gene016641:CDS | 20.0% |
| !!! | TATTTTTTGTACATAGGTTT+TGG | - | chr8.2:61733787-61733806 | MS.gene016641:intron | 20.0% |
| !!! | TTTTAATCTATCTAATTCCA+TGG | - | chr8.2:61732478-61732497 | MS.gene016641:intron | 20.0% |
| ! | ATAAACACTTATTAGGACTT+CGG | - | chr8.2:61733515-61733534 | MS.gene016641:intron | 25.0% |
| ! | ATACAACAAAAAGAGAAGAA+AGG | + | chr8.2:61733733-61733752 | None:intergenic | 25.0% |
| ! | CAACATAAGATCCAAAATTA+AGG | + | chr8.2:61733441-61733460 | None:intergenic | 25.0% |
| ! | GATAGTTACATGCAAAAAAA+TGG | + | chr8.2:61732772-61732791 | None:intergenic | 25.0% |
| ! | GCTGAGTATAATAAGTTATA+TGG | - | chr8.2:61733905-61733924 | MS.gene016641:CDS | 25.0% |
| ! | TACATATCATTGTCTAAGTT+CGG | + | chr8.2:61732962-61732981 | None:intergenic | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | - | chr8.2:61733257-61733276 | MS.gene016641:intron | 25.0% |
| ! | TTTATCTGGATTACACAATT+CGG | - | chr8.2:61732732-61732751 | MS.gene016641:intron | 25.0% |
| !! | ATTCCTTACAACCTTAATTT+TGG | - | chr8.2:61733427-61733446 | MS.gene016641:intron | 25.0% |
| !! | CATTTTCTATATACACTTTG+TGG | + | chr8.2:61732938-61732957 | None:intergenic | 25.0% |
| !! | CTCAAAACATTTGATTTATC+TGG | - | chr8.2:61732718-61732737 | MS.gene016641:intron | 25.0% |
| AAAATTGAAGAGACTGCTAA+AGG | - | chr8.2:61733944-61733963 | MS.gene016641:CDS | 30.0% | |
| AAACCACCGAAAAATTAATG+TGG | + | chr8.2:61732679-61732698 | None:intergenic | 30.0% | |
| AAATTGAAGAGACTGCTAAA+GGG | - | chr8.2:61733945-61733964 | MS.gene016641:CDS | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | - | chr8.2:61732274-61732293 | MS.gene016641:CDS | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | - | chr8.2:61733315-61733334 | MS.gene016641:intron | 30.0% | |
| AATATACTTGTGGAGTACAA+AGG | + | chr8.2:61733655-61733674 | None:intergenic | 30.0% | |
| ACATATCATTGTCTAAGTTC+GGG | + | chr8.2:61732961-61732980 | None:intergenic | 30.0% | |
| ACCTTGCTAAAATATACTTG+TGG | + | chr8.2:61733665-61733684 | None:intergenic | 30.0% | |
| ACTTCATCATCCTCATTAAT+TGG | + | chr8.2:61733246-61733265 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | + | chr8.2:61732273-61732292 | None:intergenic | 30.0% | |
| ATGAGGATGATGAAGTAATA+AGG | - | chr8.2:61733250-61733269 | MS.gene016641:intron | 30.0% | |
| ATGCTATAATACAAGCCAAA+TGG | - | chr8.2:61732875-61732894 | MS.gene016641:intron | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | - | chr8.2:61733883-61733902 | MS.gene016641:CDS | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | - | chr8.2:61733152-61733171 | MS.gene016641:intron | 30.0% | |
| CTTTGTTCCTTCATATCTAT+AGG | + | chr8.2:61733154-61733173 | None:intergenic | 30.0% | |
| GAAAGGATCTTAATGACTTA+AGG | - | chr8.2:61733609-61733628 | MS.gene016641:intron | 30.0% | |
| GATCCAAAATTAAGGTTGTA+AGG | + | chr8.2:61733433-61733452 | None:intergenic | 30.0% | |
| GTCATTAAGATCCTTTCAAA+AGG | + | chr8.2:61733606-61733625 | None:intergenic | 30.0% | |
| TCAAAAGAAGCCAATTAATG+AGG | - | chr8.2:61733233-61733252 | MS.gene016641:intron | 30.0% | |
| TCTATATACACTTTGTGGTA+GGG | + | chr8.2:61732933-61732952 | None:intergenic | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | + | chr8.2:61732272-61732291 | None:intergenic | 30.0% | |
| TGCTATAATACAAGCCAAAT+GGG | - | chr8.2:61732876-61732895 | MS.gene016641:intron | 30.0% | |
| TTCTATATACACTTTGTGGT+AGG | + | chr8.2:61732934-61732953 | None:intergenic | 30.0% | |
| ! | ACGACCATAATTTAAAACCA+TGG | + | chr8.2:61732498-61732517 | None:intergenic | 30.0% |
| ! | CCTAGACCACATTAATTTTT+CGG | - | chr8.2:61732670-61732689 | MS.gene016641:intron | 30.0% |
| ! | CTAATAACACCTATTGCTTT+TGG | - | chr8.2:61733100-61733119 | MS.gene016641:intron | 30.0% |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | + | chr8.2:61733223-61733242 | None:intergenic | 30.0% |
| !! | ATTCTAAAATCCAACCTAAG+TGG | - | chr8.2:61733694-61733713 | MS.gene016641:intron | 30.0% |
| !! | ATTTGGCTTGTATTATAGCA+TGG | + | chr8.2:61732876-61732895 | None:intergenic | 30.0% |
| !!! | ATGGTTTTAAATTATGGTCG+TGG | - | chr8.2:61732497-61732516 | MS.gene016641:intron | 30.0% |
| !!! | CAAATGTTTTGAGAAATGTG+AGG | + | chr8.2:61732711-61732730 | None:intergenic | 30.0% |
| !!! | TCCACAAGTATATTTTAGCA+AGG | - | chr8.2:61733661-61733680 | MS.gene016641:intron | 30.0% |
| AAAATGAGTCCAACCCAATA+TGG | + | chr8.2:61732905-61732924 | None:intergenic | 35.0% | |
| AAGAACTTCAGAGGAACTAT+TGG | - | chr8.2:61732321-61732340 | MS.gene016641:CDS | 35.0% | |
| AGAACTTCAGAGGAACTATT+GGG | - | chr8.2:61732322-61732341 | MS.gene016641:CDS | 35.0% | |
| AGATGAAACTGCAAAATCAG+AGG | - | chr8.2:61733179-61733198 | MS.gene016641:intron | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | + | chr8.2:61732383-61732402 | None:intergenic | 35.0% | |
| AGGTTGTAAGGAATAACATG+AGG | + | chr8.2:61733421-61733440 | None:intergenic | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | + | chr8.2:61732378-61732397 | None:intergenic | 35.0% | |
| CCGAAAAATTAATGTGGTCT+AGG | + | chr8.2:61732673-61732692 | None:intergenic | 35.0% | |
| GAAAATAGAAGCAACCACTT+AGG | + | chr8.2:61733711-61733730 | None:intergenic | 35.0% | |
| TAGAGCTGACATTGATATGA+AGG | - | chr8.2:61733874-61733893 | MS.gene016641:CDS | 35.0% | |
| TTACCTTTCTATCATTGCCA+TGG | + | chr8.2:61732411-61732430 | None:intergenic | 35.0% | |
| TTCAATGGAATGGTCAAAGA+GGG | + | chr8.2:61732368-61732387 | None:intergenic | 35.0% | |
| TTGAGCATTCTTAATGGCAT+TGG | + | chr8.2:61733217-61733236 | None:intergenic | 35.0% | |
| ! | TGCAGCATTGAAAATTGATG+TGG | - | chr8.2:61733811-61733830 | MS.gene016641:intron | 35.0% |
| !! | AGACCACATTAATTTTTCGG+TGG | - | chr8.2:61732673-61732692 | MS.gene016641:intron | 35.0% |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | + | chr8.2:61733205-61733224 | None:intergenic | 35.0% |
| !!! | CGCTGTAGTTTTTGATTTTG+CGG | - | chr8.2:61732523-61732542 | MS.gene016641:intron | 35.0% |
| !!! | TCACACGTTTTGAGAAATGT+TGG | - | chr8.2:61732800-61732819 | MS.gene016641:intron | 35.0% |
| !!! | TGTTTTGAGAAATGTGAGGT+AGG | + | chr8.2:61732707-61732726 | None:intergenic | 35.0% |
| AGATGCTCGTTTAGCAAAAG+AGG | - | chr8.2:61732246-61732265 | MS.gene016641:CDS | 40.0% | |
| ATAGAAGCAACCACTTAGGT+TGG | + | chr8.2:61733707-61733726 | None:intergenic | 40.0% | |
| ATAGGTCAGCTCGAAACAAA+CGG | - | chr8.2:61732642-61732661 | MS.gene016641:intron | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | - | chr8.2:61732405-61732424 | MS.gene016641:CDS | 40.0% | |
| CTTCAATGGAATGGTCAAAG+AGG | + | chr8.2:61732369-61732388 | None:intergenic | 40.0% | |
| GTGAGTGCCTATAGATATGA+AGG | - | chr8.2:61733144-61733163 | MS.gene016641:intron | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | - | chr8.2:61733332-61733351 | MS.gene016641:intron | 40.0% | |
| TTGCTAACCTTGATTGCTAG+AGG | - | chr8.2:61733983-61734002 | MS.gene016641:CDS | 40.0% | |
| ! | CTCAAAACGTGTGATTTGTC+TGG | + | chr8.2:61732794-61732813 | None:intergenic | 40.0% |
| ! | GAGCTGTTTCCAAAAGCAAT+AGG | + | chr8.2:61733112-61733131 | None:intergenic | 40.0% |
| ! | GCAGTCTCTTCAATTTTCTG+AGG | + | chr8.2:61733941-61733960 | None:intergenic | 40.0% |
| !! | TTGCTTTTGGAAACAGCTCT+TGG | - | chr8.2:61733113-61733132 | MS.gene016641:intron | 40.0% |
| AAACGAGCATCTCTTTCCCA+AGG | + | chr8.2:61732238-61732257 | None:intergenic | 45.0% | |
| AACGAGCATCTCTTTCCCAA+GGG | + | chr8.2:61732237-61732256 | None:intergenic | 45.0% | |
| AATGGGATGCCATATTGGGT+TGG | - | chr8.2:61732893-61732912 | MS.gene016641:CDS | 45.0% | |
| ACCCAATATGGCATCCCATT+TGG | + | chr8.2:61732893-61732912 | None:intergenic | 45.0% | |
| AGCCAAATGGGATGCCATAT+TGG | - | chr8.2:61732888-61732907 | MS.gene016641:CDS | 45.0% | |
| CTAACCTTGATTGCTAGAGG+AGG | - | chr8.2:61733986-61734005 | MS.gene016641:CDS | 45.0% | |
| GACTGCTAAAGGGAACTACA+AGG | - | chr8.2:61733955-61733974 | MS.gene016641:CDS | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | - | chr8.2:61732391-61732410 | MS.gene016641:CDS | 45.0% | |
| GCAAAAGAGGCCCTAAAGAA+AGG | - | chr8.2:61732259-61732278 | MS.gene016641:CDS | 45.0% | |
| GCCAAATGGGATGCCATATT+GGG | - | chr8.2:61732889-61732908 | MS.gene016641:CDS | 45.0% | |
| TGCATGCACAAGAACTTCAG+AGG | - | chr8.2:61732312-61732331 | MS.gene016641:CDS | 45.0% | |
| TGGAATGGTCAAAGAGGGAA+TGG | + | chr8.2:61732363-61732382 | None:intergenic | 45.0% | |
| TTAGCCTCCTCTAGCAATCA+AGG | + | chr8.2:61733993-61734012 | None:intergenic | 45.0% | |
| !!! | ATTATTATTTTTTAAAGAAT+AGG | - | chr8.2:61732624-61732643 | MS.gene016641:intron | 5.0% |
| CAGAGGAACTATTGGGAGCT+AGG | - | chr8.2:61732329-61732348 | MS.gene016641:CDS | 50.0% | |
| GGAACTATTGGGAGCTAGGA+AGG | - | chr8.2:61732333-61732352 | MS.gene016641:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 61732229 | 61734012 | 61732229 | ID=MS.gene016641 |
| chr8.2 | mRNA | 61732229 | 61734012 | 61732229 | ID=MS.gene016641.t1;Parent=MS.gene016641 |
| chr8.2 | exon | 61733815 | 61734012 | 61733815 | ID=MS.gene016641.t1.exon1;Parent=MS.gene016641.t1 |
| chr8.2 | CDS | 61733815 | 61734012 | 61733815 | ID=cds.MS.gene016641.t1;Parent=MS.gene016641.t1 |
| chr8.2 | exon | 61732888 | 61733112 | 61732888 | ID=MS.gene016641.t1.exon2;Parent=MS.gene016641.t1 |
| chr8.2 | CDS | 61732888 | 61733112 | 61732888 | ID=cds.MS.gene016641.t1;Parent=MS.gene016641.t1 |
| chr8.2 | exon | 61732559 | 61732627 | 61732559 | ID=MS.gene016641.t1.exon3;Parent=MS.gene016641.t1 |
| chr8.2 | CDS | 61732559 | 61732627 | 61732559 | ID=cds.MS.gene016641.t1;Parent=MS.gene016641.t1 |
| chr8.2 | exon | 61732229 | 61732438 | 61732229 | ID=MS.gene016641.t1.exon4;Parent=MS.gene016641.t1 |
| chr8.2 | CDS | 61732229 | 61732438 | 61732229 | ID=cds.MS.gene016641.t1;Parent=MS.gene016641.t1 |
| Gene Sequence |
| Protein sequence |
