AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016642

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016642.t1 MTR_8g038150 95.625 320 14 0 1 320 1 320 0.0 634
MS.gene016642.t1 MTR_5g063670 44.127 315 173 1 1 315 1 312 2.15e-84 257
MS.gene016642.t1 MTR_0276s0050 43.671 316 175 1 1 316 1 313 2.77e-81 249
MS.gene016642.t1 MTR_8g038220 40.823 316 183 2 1 316 1 312 3.60e-78 241
MS.gene016642.t1 MTR_8g038220 40.514 311 182 1 6 316 4 311 2.20e-77 239
MS.gene016642.t1 MTR_8g107640 42.271 317 176 3 1 315 1 312 3.20e-77 239
MS.gene016642.t1 MTR_3g018790 41.139 316 182 2 1 316 1 312 1.55e-75 234
MS.gene016642.t1 MTR_8g038180 41.009 317 183 2 1 317 1 313 3.60e-75 233
MS.gene016642.t1 MTR_8g038210 41.139 316 181 2 1 316 1 311 6.55e-75 233
MS.gene016642.t1 MTR_3g018780 40.196 306 180 1 11 316 10 312 7.05e-75 233
MS.gene016642.t1 MTR_8g038210 39.557 316 186 2 1 316 1 311 4.60e-70 220
MS.gene016642.t1 MTR_6g071605 38.170 317 189 3 1 315 1 312 9.15e-67 212
MS.gene016642.t1 MTR_2g031980 38.487 304 184 1 12 315 11 311 2.41e-66 211
MS.gene016642.t1 MTR_6g071615 40.063 317 183 3 1 315 1 312 6.17e-66 210
MS.gene016642.t1 MTR_1g033560 35.127 316 200 3 1 315 1 312 7.31e-64 204
MS.gene016642.t1 MTR_1g112520 37.855 317 190 3 1 315 1 312 2.50e-63 203
MS.gene016642.t1 MTR_8g038170 37.888 322 170 7 14 317 4 313 2.45e-59 193
MS.gene016642.t1 MTR_8g038170 37.888 322 170 7 14 317 4 313 2.45e-59 193
MS.gene016642.t1 MTR_6g071595 38.079 302 180 3 16 315 16 312 3.24e-58 190
MS.gene016642.t1 MTR_3g018790 37.759 241 147 1 76 316 21 258 3.23e-48 162
MS.gene016642.t1 MTR_8g038090 90.789 76 4 2 248 320 20 95 8.92e-40 135
MS.gene016642.t1 MTR_6g071595 35.000 240 149 3 16 253 16 250 1.62e-39 140
MS.gene016642.t1 MTR_3g018920 36.279 215 101 2 1 215 1 179 5.42e-36 128
MS.gene016642.t1 MTR_6g028030 30.421 309 200 6 16 316 9 310 2.35e-35 130
MS.gene016642.t1 MTR_3g018925 41.463 82 48 0 235 316 26 107 5.59e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016642.t1 AT2G38760 55.346 318 139 2 1 315 1 318 3.70e-126 363
MS.gene016642.t1 AT5G10230 45.079 315 170 1 1 315 1 312 1.53e-87 265
MS.gene016642.t1 AT5G65020 44.025 318 174 2 1 317 1 315 2.96e-85 259
MS.gene016642.t1 AT5G10220 42.587 317 177 2 1 315 1 314 2.52e-82 252
MS.gene016642.t1 AT5G12380 43.218 317 176 2 1 317 1 313 5.96e-82 251
MS.gene016642.t1 AT1G35720 41.250 320 178 3 1 316 1 314 1.62e-77 239
MS.gene016642.t1 AT5G65020 43.003 293 163 2 26 317 11 300 1.42e-74 232
MS.gene016642.t1 AT1G68090 34.494 316 203 2 1 315 1 313 3.23e-61 198
MS.gene016642.t1 AT2G38750 33.861 316 175 8 22 316 15 317 1.24e-43 152
MS.gene016642.t1 AT2G38750 33.974 312 172 8 26 316 2 300 1.63e-43 151
MS.gene016642.t1 AT1G68090 31.621 253 169 2 1 252 1 250 6.09e-41 143

Find 61 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGCACCAACAGGTTATA+AGG 0.231265 8.2:+61737380 MS.gene016642:intron
GTTATAAGGGATTCTATTGT+TGG 0.321656 8.2:+61737394 MS.gene016642:CDS
GATCAAACAGCTGCAGATTC+TGG 0.323861 8.2:+61735855 MS.gene016642:CDS
CGCTCTTAAATGTGGTAGTA+TGG 0.329332 8.2:+61736683 MS.gene016642:CDS
TAGATGATGATCACTTTGTT+TGG 0.349916 8.2:+61736391 MS.gene016642:CDS
AAAGAGTTAATCTTGGTGTT+AGG 0.350373 8.2:+61735200 MS.gene016642:CDS
ATGCAAGAGTTTCACGGATC+TGG 0.369500 8.2:-61736437 None:intergenic
GCATCCTACAAGCAACTCTA+TGG 0.375541 8.2:+61736456 MS.gene016642:CDS
CTGACTGCCATCAAATGATT+TGG 0.378505 8.2:-61735901 None:intergenic
ACGGATCTGGAAAACATTCC+TGG 0.388969 8.2:-61736424 None:intergenic
GTCGAGTCCAAATCATTTGA+TGG 0.419857 8.2:+61735894 MS.gene016642:CDS
TCTAAAATCACCAGAGAGTT+CGG 0.421715 8.2:-61735306 None:intergenic
TACCTTTGCGAAATGTTTCT+CGG 0.422016 8.2:-61736719 None:intergenic
AGACGTTCAGTGTCTGTGTT+AGG 0.424878 8.2:-61734764 None:intergenic
TATGCACCAACAGGTTATAA+GGG 0.431985 8.2:+61737381 MS.gene016642:intron
ATTTGCAAGGGATGCATTGA+AGG 0.432105 8.2:+61735819 MS.gene016642:CDS
ACCTTTGCGAAATGTTTCTC+GGG 0.432951 8.2:-61736718 None:intergenic
CAAATCATTTGATGGCAGTC+AGG 0.456470 8.2:+61735902 MS.gene016642:CDS
CGTCTTCAATCCGAACTCTC+TGG 0.460875 8.2:+61735296 MS.gene016642:CDS
TCTCTTTGATTGCTCACTTG+AGG 0.469042 8.2:+61735939 MS.gene016642:CDS
TTGCTGACTTTGCTAGGGAA+GGG 0.469762 8.2:+61737568 MS.gene016642:CDS
TTAGGAGAAGGAACAATCTC+TGG 0.472780 8.2:-61734746 None:intergenic
TCATTTGATGGCAGTCAGGC+AGG 0.473992 8.2:+61735906 MS.gene016642:CDS
TTATAAGGGATTCTATTGTT+GGG 0.473994 8.2:+61737395 MS.gene016642:CDS
GACTTGTGATCCAGCAGAAA+GGG 0.474999 8.2:+61735789 MS.gene016642:CDS
AGGGATTCTATTGTTGGGCT+AGG 0.475438 8.2:+61737400 MS.gene016642:CDS
TTTGCCATAGAGTTGCTTGT+AGG 0.478328 8.2:-61736460 None:intergenic
TAATAAAGTGACAGTAAGCT+TGG 0.481162 8.2:+61736314 MS.gene016642:CDS
AACAGAATGCTATAGTTCTC+TGG 0.483320 8.2:+61735767 MS.gene016642:intron
CGTCTTAGAAATGCTTTCCA+AGG 0.502094 8.2:+61734782 MS.gene016642:CDS
GTGATGTATTAGCATCCCTT+TGG 0.507732 8.2:-61737592 None:intergenic
CATTGAAGGTTAAGAGGAAA+GGG 0.507851 8.2:+61735833 MS.gene016642:CDS
AGTCTTGATGATGATGTCAT+TGG 0.513392 8.2:+61737517 MS.gene016642:CDS
TTTGCTGACTTTGCTAGGGA+AGG 0.520124 8.2:+61737567 MS.gene016642:CDS
GGGATGCATTGAAGGTTAAG+AGG 0.521573 8.2:+61735827 MS.gene016642:CDS
CTATGGCAAAACATTGGAAG+AGG 0.523562 8.2:+61736473 MS.gene016642:CDS
CTTTGATTGCTCACTTGAGG+AGG 0.526710 8.2:+61735942 MS.gene016642:CDS
AGATACCTCGGGTGACTACA+TGG 0.528259 8.2:+61737540 MS.gene016642:CDS
TGTAGGATGCAAGAGTTTCA+CGG 0.538698 8.2:-61736443 None:intergenic
GGACTTGTGATCCAGCAGAA+AGG 0.539280 8.2:+61735788 MS.gene016642:CDS
GCATTGAAGGTTAAGAGGAA+AGG 0.540378 8.2:+61735832 MS.gene016642:CDS
TGGGCTTGGTAAGCTCCTAC+AGG 0.541859 8.2:+61736289 MS.gene016642:CDS
AAGCTTGGAGGTTGCAAAGT+CGG 0.554293 8.2:+61736329 MS.gene016642:CDS
TTGCTAGGGAAGGGACCAAA+GGG 0.566608 8.2:+61737577 MS.gene016642:CDS
TAGAAATGCTCAACAAAGGA+AGG 0.572954 8.2:+61735226 MS.gene016642:CDS
TTGTTTGGATACTTAGCACC+AGG 0.574565 8.2:+61736406 MS.gene016642:CDS
AAAGGGATGCAAAATTTGCA+AGG 0.580223 8.2:+61735806 MS.gene016642:CDS
TGTCACTTTATTATGCCTGT+AGG 0.584848 8.2:-61736304 None:intergenic
TAAAGTGACAGTAAGCTTGG+AGG 0.586007 8.2:+61736317 MS.gene016642:CDS
TTTGCTAGGGAAGGGACCAA+AGG 0.591319 8.2:+61737576 MS.gene016642:CDS
GCAACTCTATGGCAAAACAT+TGG 0.593185 8.2:+61736467 MS.gene016642:CDS
TCAGTGTCTGTGTTAGGAGA+AGG 0.593736 8.2:-61734758 None:intergenic
GACATAGAAATGCTCAACAA+AGG 0.603561 8.2:+61735222 MS.gene016642:CDS
GATGTCATTGGAGATACCTC+GGG 0.603827 8.2:+61737529 MS.gene016642:CDS
GTTAATATCGCTCTTAAATG+TGG 0.604457 8.2:+61736675 MS.gene016642:CDS
AAGGGATGCAAAATTTGCAA+GGG 0.631146 8.2:+61735807 MS.gene016642:CDS
CCCCGAGAAACATTTCGCAA+AGG 0.634664 8.2:+61736717 MS.gene016642:CDS
CCTTTGCGAAATGTTTCTCG+GGG 0.655192 8.2:-61736717 None:intergenic
TGATGTCATTGGAGATACCT+CGG 0.661309 8.2:+61737528 MS.gene016642:CDS
TGTGAGTGGCTGAGAAACTG+AGG 0.667057 8.2:-61735974 None:intergenic
AAAATCCATGTAGTCACCCG+AGG 0.694388 8.2:-61737545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAGAAAATATTGA+GGG + chr8.2:61736125-61736144 MS.gene016642:intron 10.0%
!!! CTTTTTTATGTTTTTATTAA+TGG + chr8.2:61734926-61734945 MS.gene016642:intron 10.0%
!!! TATTTTAAAAGAAAATATTG+AGG + chr8.2:61736124-61736143 MS.gene016642:intron 10.0%
!! AAAAAACTAGAATTTCAAAT+TGG - chr8.2:61735461-61735480 None:intergenic 15.0%
!! ATTTACAATATTGATAAACT+TGG - chr8.2:61736969-61736988 None:intergenic 15.0%
!! TTCTAATGAAAATTTCATTA+AGG + chr8.2:61737168-61737187 MS.gene016642:intron 15.0%
!!! ATAACAATTTTATAAGCTTT+TGG + chr8.2:61735609-61735628 MS.gene016642:intron 15.0%
!!! ATATCTTTTTTGTATTCTTT+TGG + chr8.2:61735071-61735090 MS.gene016642:intron 15.0%
!!! GTTGATTTCAATAATATATA+CGG - chr8.2:61735406-61735425 None:intergenic 15.0%
!!! TACATTATTTCTTATATCTA+AGG + chr8.2:61735632-61735651 MS.gene016642:intron 15.0%
!!! TAGTTTTTTTGTTACAAAAT+TGG + chr8.2:61735472-61735491 MS.gene016642:intron 15.0%
!!! TTTTAAAAGAAAATATTGAG+GGG + chr8.2:61736126-61736145 MS.gene016642:intron 15.0%
!! AAAATGAAATGCAAAAATGT+TGG - chr8.2:61737266-61737285 None:intergenic 20.0%
!! AGTTGAACTATAAATGAAAA+CGG + chr8.2:61736180-61736199 MS.gene016642:intron 20.0%
!! TAATGAAAATTTCATTAAGG+TGG + chr8.2:61737171-61737190 MS.gene016642:intron 20.0%
!! TATTCATTCACTATGAATTT+GGG + chr8.2:61736611-61736630 MS.gene016642:intron 20.0%
!! TTAAATACAGATAGAGTAAT+AGG - chr8.2:61735510-61735529 None:intergenic 20.0%
!! TTATTCATTCACTATGAATT+TGG + chr8.2:61736610-61736629 MS.gene016642:intron 20.0%
!! TTGAAAGAAATTACAGTAAA+TGG - chr8.2:61737305-61737324 None:intergenic 20.0%
!!! CTTTTAAAATACTTGAAAAC+AGG - chr8.2:61736115-61736134 None:intergenic 20.0%
!!! GAGGAATTTTTTTTATTCAT+TGG + chr8.2:61735012-61735031 MS.gene016642:intron 20.0%
!!! TTTAATATTTTTGGAAACTC+TGG + chr8.2:61736782-61736801 MS.gene016642:intron 20.0%
! AAATGTTGTTAGATAGATTG+TGG + chr8.2:61736071-61736090 MS.gene016642:intron 25.0%
! ACATCATTATCTTGACTTAT+AGG - chr8.2:61735584-61735603 None:intergenic 25.0%
! AGATGAAAAAGAGTTAATCT+TGG + chr8.2:61735193-61735212 MS.gene016642:CDS 25.0%
! CATCATTACTTCAGAAAAAA+TGG - chr8.2:61735704-61735723 None:intergenic 25.0%
! GAACATCATTATAGTAATTG+AGG - chr8.2:61736579-61736598 None:intergenic 25.0%
! GGTTATTGGAAAATTTATGT+AGG + chr8.2:61735161-61735180 MS.gene016642:intron 25.0%
! TCTCAAAAATGAAAAGTCAA+TGG - chr8.2:61735357-61735376 None:intergenic 25.0%
! TGAATGAATAAACAACATCT+TGG - chr8.2:61736601-61736620 None:intergenic 25.0%
! TGGAAAATTTATGTAGGAAT+TGG + chr8.2:61735167-61735186 MS.gene016642:intron 25.0%
! TTATAAGGGATTCTATTGTT+GGG + chr8.2:61737395-61737414 MS.gene016642:CDS 25.0%
! TTGAATTTGTGAAGCAAATT+AGG - chr8.2:61736228-61736247 None:intergenic 25.0%
!! ATTCCAAACATTTTCTGAAT+GGG - chr8.2:61737343-61737362 None:intergenic 25.0%
!!! TTTTAACTTATCTACAGTTC+TGG - chr8.2:61736877-61736896 None:intergenic 25.0%
GAAAGATACATGATATGTGT+CGG - chr8.2:61737140-61737159 None:intergenic 30.0%
GACATAAAAACTTGTGGTAA+AGG + chr8.2:61736649-61736668 MS.gene016642:CDS 30.0%
GACTTATAGGTGTAAAATTG+AGG - chr8.2:61735571-61735590 None:intergenic 30.0%
GTTAATATCGCTCTTAAATG+TGG + chr8.2:61736675-61736694 MS.gene016642:CDS 30.0%
GTTATAAGGGATTCTATTGT+TGG + chr8.2:61737394-61737413 MS.gene016642:CDS 30.0%
TAATAAAGTGACAGTAAGCT+TGG + chr8.2:61736314-61736333 MS.gene016642:CDS 30.0%
TAGATGATGATCACTTTGTT+TGG + chr8.2:61736391-61736410 MS.gene016642:CDS 30.0%
TGAATCACAAAGATTTGTAG+AGG + chr8.2:61734993-61735012 MS.gene016642:intron 30.0%
TTACAGGACATAAAAACTTG+TGG + chr8.2:61736643-61736662 MS.gene016642:intron 30.0%
TTACCCATTCAGAAAATGTT+TGG + chr8.2:61737337-61737356 MS.gene016642:intron 30.0%
TTATCTAAGTTTGTCTAGCT+AGG + chr8.2:61736041-61736060 MS.gene016642:intron 30.0%
! ATTTGGGTGATTTTCTTTAC+AGG + chr8.2:61736627-61736646 MS.gene016642:intron 30.0%
! GATTCCAAACATTTTCTGAA+TGG - chr8.2:61737344-61737363 None:intergenic 30.0%
!! AAAGAGTTAATCTTGGTGTT+AGG + chr8.2:61735200-61735219 MS.gene016642:CDS 30.0%
!! AGTGTTATGCAGATTTTAGT+GGG + chr8.2:61736270-61736289 MS.gene016642:intron 30.0%
!! ATTTTTGTATCGATGGTTGT+TGG + chr8.2:61735107-61735126 MS.gene016642:intron 30.0%
!! TTGATGTTGATGATGGTTAT+TGG + chr8.2:61735147-61735166 MS.gene016642:intron 30.0%
!!! ATTTTTTGCTGACTTTGCTA+GGG + chr8.2:61737563-61737582 MS.gene016642:CDS 30.0%
!!! TATGCTGATTTTTGTATCGA+TGG + chr8.2:61735100-61735119 MS.gene016642:intron 30.0%
AAAGAGAAAGAGAGAAACCT+TGG - chr8.2:61734802-61734821 None:intergenic 35.0%
AAAGGGATGCAAAATTTGCA+AGG + chr8.2:61735806-61735825 MS.gene016642:CDS 35.0%
AACAGAATGCTATAGTTCTC+TGG + chr8.2:61735767-61735786 MS.gene016642:intron 35.0%
AAGGGATGCAAAATTTGCAA+GGG + chr8.2:61735807-61735826 MS.gene016642:CDS 35.0%
CATTGAAGGTTAAGAGGAAA+GGG + chr8.2:61735833-61735852 MS.gene016642:CDS 35.0%
GACATAGAAATGCTCAACAA+AGG + chr8.2:61735222-61735241 MS.gene016642:CDS 35.0%
GCTACGCATACTAATTGTAT+AGG + chr8.2:61737038-61737057 MS.gene016642:intron 35.0%
TACCTTTGCGAAATGTTTCT+CGG - chr8.2:61736722-61736741 None:intergenic 35.0%
TAGAAATGCTCAACAAAGGA+AGG + chr8.2:61735226-61735245 MS.gene016642:CDS 35.0%
TAGAATCCCTTATAACCTGT+TGG - chr8.2:61737390-61737409 None:intergenic 35.0%
TATGCACCAACAGGTTATAA+GGG + chr8.2:61737381-61737400 MS.gene016642:intron 35.0%
! GAGATTGTTGATGTTGATGA+TGG + chr8.2:61735140-61735159 MS.gene016642:intron 35.0%
! GAGTGTTATGCAGATTTTAG+TGG + chr8.2:61736269-61736288 MS.gene016642:intron 35.0%
! TCTAAAATCACCAGAGAGTT+CGG - chr8.2:61735309-61735328 None:intergenic 35.0%
!! AGTCTTGATGATGATGTCAT+TGG + chr8.2:61737517-61737536 MS.gene016642:CDS 35.0%
!! TGTCACTTTATTATGCCTGT+AGG - chr8.2:61736307-61736326 None:intergenic 35.0%
!!! GATTTTTTGCTGACTTTGCT+AGG + chr8.2:61737562-61737581 MS.gene016642:CDS 35.0%
ACCTTTGCGAAATGTTTCTC+GGG - chr8.2:61736721-61736740 None:intergenic 40.0%
ATTCACTTCTATGCACCAAC+AGG + chr8.2:61737372-61737391 MS.gene016642:intron 40.0%
ATTTGCAAGGGATGCATTGA+AGG + chr8.2:61735819-61735838 MS.gene016642:CDS 40.0%
CATCCGTTTACCAACCATTT+CGG + chr8.2:61736926-61736945 MS.gene016642:intron 40.0%
CGCTCTTAAATGTGGTAGTA+TGG + chr8.2:61736683-61736702 MS.gene016642:CDS 40.0%
CGTCTTAGAAATGCTTTCCA+AGG + chr8.2:61734782-61734801 MS.gene016642:CDS 40.0%
CTATGCACCAACAGGTTATA+AGG + chr8.2:61737380-61737399 MS.gene016642:intron 40.0%
CTATGGCAAAACATTGGAAG+AGG + chr8.2:61736473-61736492 MS.gene016642:CDS 40.0%
CTGACTGCCATCAAATGATT+TGG - chr8.2:61735904-61735923 None:intergenic 40.0%
GCAACTCTATGGCAAAACAT+TGG + chr8.2:61736467-61736486 MS.gene016642:CDS 40.0%
GCATTGAAGGTTAAGAGGAA+AGG + chr8.2:61735832-61735851 MS.gene016642:CDS 40.0%
GTCGAGTCCAAATCATTTGA+TGG + chr8.2:61735894-61735913 MS.gene016642:CDS 40.0%
TAAAGTGACAGTAAGCTTGG+AGG + chr8.2:61736317-61736336 MS.gene016642:CDS 40.0%
TCTCTTTGATTGCTCACTTG+AGG + chr8.2:61735939-61735958 MS.gene016642:CDS 40.0%
TGATGTCATTGGAGATACCT+CGG + chr8.2:61737528-61737547 MS.gene016642:CDS 40.0%
TGTAGGATGCAAGAGTTTCA+CGG - chr8.2:61736446-61736465 None:intergenic 40.0%
TTAGGAGAAGGAACAATCTC+TGG - chr8.2:61734749-61734768 None:intergenic 40.0%
TTGAAAACTCGACTCCGAAA+TGG - chr8.2:61736943-61736962 None:intergenic 40.0%
TTGTTTGGATACTTAGCACC+AGG + chr8.2:61736406-61736425 MS.gene016642:CDS 40.0%
TTTGCCATAGAGTTGCTTGT+AGG - chr8.2:61736463-61736482 None:intergenic 40.0%
! AATTTTGCATCCCTTTCTGC+TGG - chr8.2:61735802-61735821 None:intergenic 40.0%
! CAAATCATTTGATGGCAGTC+AGG + chr8.2:61735902-61735921 MS.gene016642:CDS 40.0%
! TTTCGGAGTCGAGTTTTCAA+AGG + chr8.2:61736943-61736962 MS.gene016642:intron 40.0%
!! ACTCCGAAATGGTTGGTAAA+CGG - chr8.2:61736932-61736951 None:intergenic 40.0%
!! CATGTCCTTACTTTTGTGAG+TGG - chr8.2:61735991-61736010 None:intergenic 40.0%
!!! TATGCAGATTTTAGTGGGCT+TGG + chr8.2:61736275-61736294 MS.gene016642:intron 40.0%
AAAATCCATGTAGTCACCCG+AGG - chr8.2:61737548-61737567 None:intergenic 45.0%
AAACTCGACTCCGAAATGGT+TGG - chr8.2:61736939-61736958 None:intergenic 45.0%
AAGCTTGGAGGTTGCAAAGT+CGG + chr8.2:61736329-61736348 MS.gene016642:CDS 45.0%
ACGGATCTGGAAAACATTCC+TGG - chr8.2:61736427-61736446 None:intergenic 45.0%
AGACGTTCAGTGTCTGTGTT+AGG - chr8.2:61734767-61734786 None:intergenic 45.0%
AGGGATTCTATTGTTGGGCT+AGG + chr8.2:61737400-61737419 MS.gene016642:CDS 45.0%
ATGCAAGAGTTTCACGGATC+TGG - chr8.2:61736440-61736459 None:intergenic 45.0%
CCTTTGCGAAATGTTTCTCG+GGG - chr8.2:61736720-61736739 None:intergenic 45.0%
CTCAGCCACTCACAAAAGTA+AGG + chr8.2:61735983-61736002 MS.gene016642:intron 45.0%
CTTTGATTGCTCACTTGAGG+AGG + chr8.2:61735942-61735961 MS.gene016642:CDS 45.0%
GACTTGTGATCCAGCAGAAA+GGG + chr8.2:61735789-61735808 MS.gene016642:CDS 45.0%
GATCAAACAGCTGCAGATTC+TGG + chr8.2:61735855-61735874 MS.gene016642:CDS 45.0%
GATGTCATTGGAGATACCTC+GGG + chr8.2:61737529-61737548 MS.gene016642:CDS 45.0%
GCATCCTACAAGCAACTCTA+TGG + chr8.2:61736456-61736475 MS.gene016642:CDS 45.0%
GGGATGCATTGAAGGTTAAG+AGG + chr8.2:61735827-61735846 MS.gene016642:CDS 45.0%
TCAGTGTCTGTGTTAGGAGA+AGG - chr8.2:61734761-61734780 None:intergenic 45.0%
!! TTGCTGACTTTGCTAGGGAA+GGG + chr8.2:61737568-61737587 MS.gene016642:CDS 45.0%
!! TTTGCTGACTTTGCTAGGGA+AGG + chr8.2:61737567-61737586 MS.gene016642:CDS 45.0%
!!! TATAAGTTTTTTAATATTTT+TGG + chr8.2:61736773-61736792 MS.gene016642:intron 5.0%
!!! TTTTTTATGTTTTTATTAAT+GGG + chr8.2:61734927-61734946 MS.gene016642:intron 5.0%
AGATACCTCGGGTGACTACA+TGG + chr8.2:61737540-61737559 MS.gene016642:CDS 50.0%
CCCCGAGAAACATTTCGCAA+AGG + chr8.2:61736717-61736736 MS.gene016642:CDS 50.0%
CGTCTTCAATCCGAACTCTC+TGG + chr8.2:61735296-61735315 MS.gene016642:CDS 50.0%
GGACTTGTGATCCAGCAGAA+AGG + chr8.2:61735788-61735807 MS.gene016642:CDS 50.0%
TGTGAGTGGCTGAGAAACTG+AGG - chr8.2:61735977-61735996 None:intergenic 50.0%
TTGCTAGGGAAGGGACCAAA+GGG + chr8.2:61737577-61737596 MS.gene016642:CDS 50.0%
TTTGCTAGGGAAGGGACCAA+AGG + chr8.2:61737576-61737595 MS.gene016642:CDS 50.0%
! TCATTTGATGGCAGTCAGGC+AGG + chr8.2:61735906-61735925 MS.gene016642:CDS 50.0%
! TGGGCTTGGTAAGCTCCTAC+AGG + chr8.2:61736289-61736308 MS.gene016642:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 61734728 61737606 61734728 ID=MS.gene016642
chr8.2 mRNA 61734728 61737606 61734728 ID=MS.gene016642.t1;Parent=MS.gene016642
chr8.2 exon 61734728 61734803 61734728 ID=MS.gene016642.t1.exon1;Parent=MS.gene016642.t1
chr8.2 CDS 61734728 61734803 61734728 ID=cds.MS.gene016642.t1;Parent=MS.gene016642.t1
chr8.2 exon 61735183 61735328 61735183 ID=MS.gene016642.t1.exon2;Parent=MS.gene016642.t1
chr8.2 CDS 61735183 61735328 61735183 ID=cds.MS.gene016642.t1;Parent=MS.gene016642.t1
chr8.2 exon 61735772 61735999 61735772 ID=MS.gene016642.t1.exon3;Parent=MS.gene016642.t1
chr8.2 CDS 61735772 61735999 61735772 ID=cds.MS.gene016642.t1;Parent=MS.gene016642.t1
chr8.2 exon 61736282 61736494 61736282 ID=MS.gene016642.t1.exon4;Parent=MS.gene016642.t1
chr8.2 CDS 61736282 61736494 61736282 ID=cds.MS.gene016642.t1;Parent=MS.gene016642.t1
chr8.2 exon 61736649 61736738 61736649 ID=MS.gene016642.t1.exon5;Parent=MS.gene016642.t1
chr8.2 CDS 61736649 61736738 61736649 ID=cds.MS.gene016642.t1;Parent=MS.gene016642.t1
chr8.2 exon 61737394 61737606 61737394 ID=MS.gene016642.t1.exon6;Parent=MS.gene016642.t1
chr8.2 CDS 61737394 61737606 61737394 ID=cds.MS.gene016642.t1;Parent=MS.gene016642.t1
Gene Sequence

>MS.gene016642

ATGGCTTCATTGAAACTACCAGAGATTGTTCCTTCTCCTAACACAGACACTGAACGTCTTAGAAATGCTTTCCAAGGTTTCTCTCTTTCTCTTTCTCTCTCTAATGCTATGAAAGTTTTTTAAAAAAAAAATTTTTTTTTTAATGATGTTAAGTATTTTTCTGAATTTGTGTAGCGAGAGTTATGTTAAAAAACTGAACTTTTTTATGTTTTTATTAATGGGTTTTTTCAGAAACGTTACTTTATAATATGCATGTTTGTAAAATTGAATCACAAAGATTTGTAGAGGAATTTTTTTTATTCATTGGACAACATTGAAAGTACTGTTATGATTTTGTCATTTTATATCTTTTTTGTATTCTTTTGGTTCATTTATGCTGATTTTTGTATCGATGGTTGTTGGTATTAGAAATGAGATTGTTGATGTTGATGATGGTTATTGGAAAATTTATGTAGGAATTGGAACAGATGAAAAAGAGTTAATCTTGGTGTTAGGACATAGAAATGCTCAACAAAGGAAGGAAATCAGAGAAACTTATCAGCAACGTTACAATGAATCGCTTCTTGATCGTCTTCAATCCGAACTCTCTGGTGATTTTAGAGTATGTCATCATGTCATTCTTGCTTCCATTGACTTTTCATTTTTGAGAAACAATTCTTCAATGTCGTATTTTATCCGTATATATTATTGAAATCAACTGAAATTATGTCATTTTCAGTGATTGCTTGTGCCAATTTGAAATTCTAGTTTTTTTGTTACAAAATTGGTCAATCATGTGTCCTATTACTCTATCTGTATTTAAATTTTGAGCTAATTTGATTTGAGCATTACAAATATAAACCTCAATTTTACACCTATAAGTCAAGATAATGATGTTTGTCATAACAATTTTATAAGCTTTTGGTACATTATTTCTTATATCTAAGGAAAAGTTCATTTTATCGTCGTATTTCAATATGATTTTCGAAGCGTGCCATTTTTTCTGAAGTAATGATGCGATCTACAATGCAATATCATGACATAGAATAGTGTGATATGTAACAGAATGCTATAGTTCTCTGGACTTGTGATCCAGCAGAAAGGGATGCAAAATTTGCAAGGGATGCATTGAAGGTTAAGAGGAAAGGGATCAAACAGCTGCAGATTCTGGTTGAAATAGCATGCGCGTCGAGTCCAAATCATTTGATGGCAGTCAGGCAGGCTTACTGCTCTCTCTTTGATTGCTCACTTGAGGAGGACATTATAGCCTCAGTTTCTCAGCCACTCACAAAAGTAAGGACATGAAGTTTCTTATTCGCATATAAAAGAAACTCTTATCTAAGTTTGTCTAGCTAGGTTCAAGTAAATGTTGTTAGATAGATTGTGGCTAAAAGAAAATGTTAGACCTGTTTTCAAGTATTTTAAAAGAAAATATTGAGGGGAATGTTGAGTCTATATTCTCATATGTTTATTAGTTGAACTATAAATGAAAACGGAAAACATGAAAAGAAAACGAGTCCTAATTTGCTTCACAAATTCAATGTTCTTCAAACTTATGATGTGAGTGTTATGCAGATTTTAGTGGGCTTGGTAAGCTCCTACAGGCATAATAAAGTGACAGTAAGCTTGGAGGTTGCAAAGTCGGAAGCAGAAAAACTACATGAAGCAATCAACAATAAGAAATTAGATGATGATCACTTTGTTTGGATACTTAGCACCAGGAATGTTTTCCAGATCCGTGAAACTCTTGCATCCTACAAGCAACTCTATGGCAAAACATTGGAAGAGGTTTTGTTTAACGATTTCAATTTTAATGTCAACTAGTAATTTAAATCATGTCACTCATTCGAAATGTAGTTAACAGAAAAGCCTCAATTACTATAATGATGTTCCAAGATGTTGTTTATTCATTCACTATGAATTTGGGTGATTTTCTTTACAGGACATAAAAACTTGTGGTAAAGGTGAGTTAATATCGCTCTTAAATGTGGTAGTATGGTGTATAGAATGCCCCGAGAAACATTTCGCAAAGGTACTTGTCAATTATCTTCTACTCAAGACAAGTTTATAAGTTTTTTAATATTTTTGGAAACTCTGGTTTATAAGTTAATACTACATTATTAGAACTCACTGATCAATTTTCAAGATATATCTCTAACTCGCTTTTCCAGAACTGTAGATAAGTTAAAAAGAAAAGAATCTGTCTTTCTTTTTCTGTTCATCCGTTTACCAACCATTTCGGAGTCGAGTTTTCAAAGGCCAAGTTTATCAATATTGTAAATGATACATTGTACATACTATTGATTATTTCTAATTTTTAAGATTAGATATGCTACGCATACTAATTGTATAGGTTATTGATAGCTCGCATTGAGAATTTAGCTTGTTTGCTTGAGATTCTTCTCTATTCAAAGACGATAGCTGCATACTCCGACACATATCATGTATCTTTCGTTCGATCTTCTAATGAAAATTTCATTAAGGTGGTTTGAAAGATCAAATTTTGACATCAATTCAGTCGTTTTATATGACTATTTTGATATCTTTATAGAAGTACCAACATTTTTGCATTTCATTTTTAAAATATCAAAGTATCCATTTACTGTAATTTCTTTCAAGCTATATCAAGATTACCCATTCAGAAAATGTTTGGAATCTCATTTCGATTCACTTCTATGCACCAACAGGTTATAAGGGATTCTATTGTTGGGCTAGGAACTGATGAAGATTCTCTTAACAGAGCTATTGTAACTCGAGCTGAAATCGACTTGTTGAAAGTGAGATTCGAGTATGCTAACATGTACAAATCAAGTCTTGATGATGATGTCATTGGAGATACCTCGGGTGACTACATGGATTTTTTGCTGACTTTGCTAGGGAAGGGACCAAAGGGATGCTAA
Protein sequence

>MS.gene016642.t1

MASLKLPEIVPSPNTDTERLRNAFQGIGTDEKELILVLGHRNAQQRKEIRETYQQRYNESLLDRLQSELSGDFRNAIVLWTCDPAERDAKFARDALKVKRKGIKQLQILVEIACASSPNHLMAVRQAYCSLFDCSLEEDIIASVSQPLTKILVGLVSSYRHNKVTVSLEVAKSEAEKLHEAINNKKLDDDHFVWILSTRNVFQIRETLASYKQLYGKTLEEDIKTCGKGELISLLNVVVWCIECPEKHFAKVIRDSIVGLGTDEDSLNRAIVTRAEIDLLKVRFEYANMYKSSLDDDVIGDTSGDYMDFLLTLLGKGPKGC