Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056195.t1 | XP_003627774.1 | 95.3 | 321 | 8 | 1 | 1 | 314 | 1 | 321 | 2.40E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056195.t1 | Q9SE45 | 55.0 | 318 | 133 | 3 | 1 | 308 | 1 | 318 | 2.8e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056195.t1 | G7LF82 | 95.3 | 321 | 8 | 1 | 1 | 314 | 1 | 321 | 1.7e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056195.t1 | MTR_8g038150 | 95.327 | 321 | 8 | 1 | 1 | 314 | 1 | 321 | 0.0 | 628 |
| MS.gene056195.t1 | MTR_5g063670 | 41.905 | 315 | 173 | 2 | 1 | 308 | 1 | 312 | 2.16e-76 | 236 |
| MS.gene056195.t1 | MTR_8g038220 | 40.190 | 316 | 178 | 3 | 1 | 309 | 1 | 312 | 1.72e-74 | 231 |
| MS.gene056195.t1 | MTR_8g038220 | 39.871 | 311 | 177 | 2 | 6 | 309 | 4 | 311 | 1.47e-73 | 229 |
| MS.gene056195.t1 | MTR_3g018790 | 40.506 | 316 | 177 | 3 | 1 | 309 | 1 | 312 | 1.41e-72 | 226 |
| MS.gene056195.t1 | MTR_0276s0050 | 41.139 | 316 | 176 | 2 | 1 | 309 | 1 | 313 | 1.71e-72 | 226 |
| MS.gene056195.t1 | MTR_8g038180 | 40.694 | 317 | 177 | 3 | 1 | 310 | 1 | 313 | 2.27e-72 | 226 |
| MS.gene056195.t1 | MTR_8g107640 | 40.694 | 317 | 174 | 4 | 1 | 308 | 1 | 312 | 3.76e-71 | 223 |
| MS.gene056195.t1 | MTR_3g018780 | 39.216 | 306 | 176 | 2 | 11 | 309 | 10 | 312 | 4.16e-71 | 223 |
| MS.gene056195.t1 | MTR_8g038210 | 39.557 | 316 | 179 | 3 | 1 | 309 | 1 | 311 | 3.66e-69 | 218 |
| MS.gene056195.t1 | MTR_8g038210 | 40.138 | 289 | 169 | 1 | 21 | 309 | 27 | 311 | 1.36e-66 | 211 |
| MS.gene056195.t1 | MTR_6g071605 | 36.593 | 317 | 187 | 4 | 1 | 308 | 1 | 312 | 3.12e-61 | 197 |
| MS.gene056195.t1 | MTR_2g031980 | 37.171 | 304 | 181 | 2 | 12 | 308 | 11 | 311 | 1.74e-60 | 196 |
| MS.gene056195.t1 | MTR_6g071615 | 38.486 | 317 | 181 | 4 | 1 | 308 | 1 | 312 | 1.92e-60 | 196 |
| MS.gene056195.t1 | MTR_1g033560 | 33.861 | 316 | 197 | 4 | 1 | 308 | 1 | 312 | 1.46e-58 | 191 |
| MS.gene056195.t1 | MTR_1g112520 | 36.278 | 317 | 188 | 4 | 1 | 308 | 1 | 312 | 6.52e-58 | 189 |
| MS.gene056195.t1 | MTR_8g038170 | 37.987 | 308 | 161 | 8 | 21 | 310 | 18 | 313 | 3.71e-56 | 184 |
| MS.gene056195.t1 | MTR_8g038170 | 37.987 | 308 | 161 | 8 | 21 | 310 | 18 | 313 | 3.71e-56 | 184 |
| MS.gene056195.t1 | MTR_6g071595 | 37.457 | 291 | 175 | 3 | 20 | 308 | 27 | 312 | 9.00e-55 | 181 |
| MS.gene056195.t1 | MTR_3g018790 | 38.174 | 241 | 146 | 1 | 69 | 309 | 21 | 258 | 1.35e-49 | 166 |
| MS.gene056195.t1 | MTR_8g038090 | 90.909 | 77 | 4 | 2 | 241 | 314 | 20 | 96 | 1.01e-40 | 137 |
| MS.gene056195.t1 | MTR_6g028030 | 32.143 | 280 | 179 | 5 | 38 | 309 | 34 | 310 | 4.43e-36 | 132 |
| MS.gene056195.t1 | MTR_6g071595 | 34.061 | 229 | 144 | 3 | 20 | 246 | 27 | 250 | 5.56e-36 | 130 |
| MS.gene056195.t1 | MTR_3g018920 | 35.349 | 215 | 96 | 3 | 1 | 208 | 1 | 179 | 8.87e-33 | 119 |
| MS.gene056195.t1 | MTR_3g018925 | 38.889 | 90 | 55 | 0 | 220 | 309 | 18 | 107 | 4.21e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056195.t1 | AT2G38760 | 54.717 | 318 | 134 | 3 | 1 | 308 | 1 | 318 | 2.84e-122 | 353 |
| MS.gene056195.t1 | AT5G65020 | 43.396 | 318 | 169 | 3 | 1 | 310 | 1 | 315 | 9.38e-82 | 250 |
| MS.gene056195.t1 | AT5G10230 | 42.857 | 315 | 170 | 2 | 1 | 308 | 1 | 312 | 5.60e-80 | 246 |
| MS.gene056195.t1 | AT5G12380 | 43.464 | 306 | 163 | 2 | 12 | 310 | 11 | 313 | 2.59e-79 | 244 |
| MS.gene056195.t1 | AT5G10220 | 41.640 | 317 | 173 | 3 | 1 | 308 | 1 | 314 | 1.08e-76 | 237 |
| MS.gene056195.t1 | AT5G65020 | 43.643 | 291 | 160 | 2 | 21 | 310 | 13 | 300 | 1.05e-75 | 234 |
| MS.gene056195.t1 | AT1G35720 | 40.625 | 320 | 173 | 4 | 1 | 309 | 1 | 314 | 9.92e-73 | 227 |
| MS.gene056195.t1 | AT1G68090 | 32.911 | 316 | 201 | 3 | 1 | 308 | 1 | 313 | 2.73e-56 | 185 |
| MS.gene056195.t1 | AT2G38750 | 33.441 | 311 | 173 | 8 | 20 | 309 | 3 | 300 | 2.63e-43 | 150 |
| MS.gene056195.t1 | AT2G38750 | 33.441 | 311 | 173 | 8 | 20 | 309 | 20 | 317 | 2.64e-43 | 151 |
| MS.gene056195.t1 | AT1G68090 | 29.644 | 253 | 167 | 3 | 1 | 245 | 1 | 250 | 4.57e-36 | 130 |
Find 58 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGCACCAACAGGTTATA+AGG | 0.231265 | 8.1:+65603229 | MS.gene056195:intron |
| TAATAAAGTGACAGTAAATT+TGG | 0.264296 | 8.1:+65602003 | MS.gene056195:CDS |
| GTTATAAGGGATTCTATTGT+TGG | 0.321656 | 8.1:+65603243 | MS.gene056195:CDS |
| GATCAAACAGCTGCAGATTC+TGG | 0.323861 | 8.1:+65601477 | MS.gene056195:CDS |
| GCATCCTACAAGCAACTCTA+TGG | 0.327186 | 8.1:+65602145 | MS.gene056195:CDS |
| CACTCTTAAATGTGGTAGTT+TGG | 0.332401 | 8.1:+65602351 | MS.gene056195:CDS |
| ATGCAAAAGTTTCGCGGATC+TGG | 0.343027 | 8.1:-65602126 | None:intergenic |
| TAGATGATGATCACTTTGTT+TGG | 0.349916 | 8.1:+65602080 | MS.gene056195:CDS |
| AAAGAGTTAATCTTGGTGTT+AGG | 0.350373 | 8.1:+65600822 | MS.gene056195:CDS |
| GCGGATCTGGAAAACATTCC+TGG | 0.367782 | 8.1:-65602113 | None:intergenic |
| TCTAAAATCACCAGAGAGTT+CGG | 0.421715 | 8.1:-65600928 | None:intergenic |
| TACCTTTGCGAAATGTTTCT+CGG | 0.422016 | 8.1:-65602387 | None:intergenic |
| AGACGTTCAGTGTCTGTGTT+AGG | 0.424878 | 8.1:-65600385 | None:intergenic |
| TATGCACCAACAGGTTATAA+GGG | 0.431985 | 8.1:+65603230 | MS.gene056195:intron |
| ATTTGCAAGGGATGCATTGA+AGG | 0.432105 | 8.1:+65601441 | MS.gene056195:CDS |
| ACCTTTGCGAAATGTTTCTC+GGG | 0.432951 | 8.1:-65602386 | None:intergenic |
| GTCGAGTCCGAATCATTTGA+TGG | 0.438165 | 8.1:+65601516 | MS.gene056195:CDS |
| CGAATCATTTGATGGCAGTC+AGG | 0.458739 | 8.1:+65601524 | MS.gene056195:CDS |
| CGTCTTCAATCCGAACTCTC+TGG | 0.460875 | 8.1:+65600918 | MS.gene056195:CDS |
| TCTCTTTGATTGCTCACTTG+AGG | 0.469042 | 8.1:+65601561 | MS.gene056195:CDS |
| TTAGGAGAAGGAACAATCTC+TGG | 0.472780 | 8.1:-65600367 | None:intergenic |
| TTATAAGGGATTCTATTGTT+GGG | 0.473994 | 8.1:+65603244 | MS.gene056195:CDS |
| GTGATGTGTTAGTATCCCTT+TGG | 0.474710 | 8.1:-65603441 | None:intergenic |
| AGGGATTCTATTGTTGGGCT+AGG | 0.475438 | 8.1:+65603249 | MS.gene056195:CDS |
| TTTGCCATAGAGTTGCTTGT+AGG | 0.478328 | 8.1:-65602149 | None:intergenic |
| TCATTTGATGGCAGTCAGGC+AGG | 0.480984 | 8.1:+65601528 | MS.gene056195:CDS |
| AACAGAATGCTATAGTTCTC+TGG | 0.483320 | 8.1:+65601389 | MS.gene056195:intron |
| CTGACTGCCATCAAATGATT+CGG | 0.489593 | 8.1:-65601523 | None:intergenic |
| GACTTGTGATCCACCAGAAA+GGG | 0.489831 | 8.1:+65601411 | MS.gene056195:CDS |
| TTGCTGACTTTGCTAGGGAA+AGG | 0.503452 | 8.1:+65603417 | MS.gene056195:CDS |
| CATTGAAGGTTAAGAGGAAA+GGG | 0.507851 | 8.1:+65601455 | MS.gene056195:CDS |
| AGTCTTGATGATGATGTCAT+TGG | 0.513392 | 8.1:+65603366 | MS.gene056195:CDS |
| GGGATGCATTGAAGGTTAAG+AGG | 0.521573 | 8.1:+65601449 | MS.gene056195:CDS |
| TAAAGTGACAGTAAATTTGG+AGG | 0.523631 | 8.1:+65602006 | MS.gene056195:CDS |
| AAATTTGGAGGTTGCAAAGT+CGG | 0.525336 | 8.1:+65602018 | MS.gene056195:CDS |
| CTTTGATTGCTCACTTGAGG+AGG | 0.526710 | 8.1:+65601564 | MS.gene056195:CDS |
| AGATACCTCGGGTGACTACA+TGG | 0.528259 | 8.1:+65603389 | MS.gene056195:CDS |
| GGACTTGTGATCCACCAGAA+AGG | 0.540252 | 8.1:+65601410 | MS.gene056195:CDS |
| GCATTGAAGGTTAAGAGGAA+AGG | 0.540378 | 8.1:+65601454 | MS.gene056195:CDS |
| TGGGCTTAGTAAGCTCCTAC+AGG | 0.549295 | 8.1:+65601978 | MS.gene056195:CDS |
| CTATGGCAAAACATTTGAAG+AGG | 0.571614 | 8.1:+65602162 | MS.gene056195:CDS |
| TAGAAATGCTCAACAAAGGA+AGG | 0.572954 | 8.1:+65600848 | MS.gene056195:CDS |
| TTGTTTGGATACTTAGCACC+AGG | 0.574565 | 8.1:+65602095 | MS.gene056195:CDS |
| TTGCTAGGGAAAGGACCAAA+GGG | 0.576100 | 8.1:+65603426 | MS.gene056195:CDS |
| AAAGGGATGCAAAATTTGCA+AGG | 0.580223 | 8.1:+65601428 | MS.gene056195:CDS |
| TGTAGGATGCAAAAGTTTCG+CGG | 0.581239 | 8.1:-65602132 | None:intergenic |
| TGTCACTTTATTATGCCTGT+AGG | 0.584848 | 8.1:-65601993 | None:intergenic |
| TCAGTGTCTGTGTTAGGAGA+AGG | 0.593736 | 8.1:-65600379 | None:intergenic |
| GACATAGAAATGCTCAACAA+AGG | 0.603561 | 8.1:+65600844 | MS.gene056195:CDS |
| GATGTCATTGGAGATACCTC+GGG | 0.603827 | 8.1:+65603378 | MS.gene056195:CDS |
| TTTGACATCACTCTTAAATG+TGG | 0.614354 | 8.1:+65602343 | MS.gene056195:CDS |
| AAGGGATGCAAAATTTGCAA+GGG | 0.631146 | 8.1:+65601429 | MS.gene056195:CDS |
| TTTGCTAGGGAAAGGACCAA+AGG | 0.633041 | 8.1:+65603425 | MS.gene056195:CDS |
| CCCCGAGAAACATTTCGCAA+AGG | 0.634664 | 8.1:+65602385 | MS.gene056195:CDS |
| CCTTTGCGAAATGTTTCTCG+GGG | 0.655192 | 8.1:-65602385 | None:intergenic |
| TGATGTCATTGGAGATACCT+CGG | 0.661309 | 8.1:+65603377 | MS.gene056195:CDS |
| TGTGAGTGGCTGAGAAACTG+AGG | 0.667057 | 8.1:-65601596 | None:intergenic |
| AAAATCCATGTAGTCACCCG+AGG | 0.694388 | 8.1:-65603394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAAGTTTATTATTTTTT+TGG | + | chr8.1:65602441-65602460 | MS.gene056195:intron | 10.0% |
| !!! | CTTTTTTATGTTTTTATTAA+TGG | + | chr8.1:65600548-65600567 | MS.gene056195:intron | 10.0% |
| !!! | TATTATTTTTTTGGAAATTT+GGG | + | chr8.1:65602450-65602469 | MS.gene056195:intron | 10.0% |
| !!! | TTATTATTTTTTTGGAAATT+TGG | + | chr8.1:65602449-65602468 | MS.gene056195:intron | 10.0% |
| !! | AAAAAACTAGAATTTCAAAT+TGG | - | chr8.1:65601083-65601102 | None:intergenic | 15.0% |
| !! | AGTTGAAATAAAAATGAAAA+CGG | + | chr8.1:65601869-65601888 | MS.gene056195:intron | 15.0% |
| !! | ATTTACAACATTTATAAACT+AGG | - | chr8.1:65602640-65602659 | None:intergenic | 15.0% |
| !! | TTCTAATGAAAATTTCATTA+AGG | + | chr8.1:65603013-65603032 | MS.gene056195:intron | 15.0% |
| !! | TTGAAAGAAATTAAAGTAAA+TGG | - | chr8.1:65603154-65603173 | None:intergenic | 15.0% |
| !!! | ATAACAATTTTATAAGCTTT+TGG | + | chr8.1:65601231-65601250 | MS.gene056195:intron | 15.0% |
| !!! | ATATCTTTTTTGTATTCTTT+TGG | + | chr8.1:65600693-65600712 | MS.gene056195:intron | 15.0% |
| !!! | ATTTTGACGAATTTTTTTAT+AGG | + | chr8.1:65603085-65603104 | MS.gene056195:intron | 15.0% |
| !!! | GTTGATTTCAATAATATATA+CGG | - | chr8.1:65601028-65601047 | None:intergenic | 15.0% |
| !!! | TACATTATTTCTTATATCTA+AGG | + | chr8.1:65601254-65601273 | MS.gene056195:intron | 15.0% |
| !!! | TAGTTTTTTTGTTACAAAAT+TGG | + | chr8.1:65601094-65601113 | MS.gene056195:intron | 15.0% |
| !! | TAATAAAGTGACAGTAAATT+TGG | + | chr8.1:65602003-65602022 | MS.gene056195:CDS | 20.0% |
| !! | TAATGAAAATTTCATTAAGG+TGG | + | chr8.1:65603016-65603035 | MS.gene056195:intron | 20.0% |
| !! | TATTCATTCACTATGAATTT+GGG | + | chr8.1:65602279-65602298 | MS.gene056195:intron | 20.0% |
| !! | TTAAATACAGATAGAGTAAT+AGG | - | chr8.1:65601132-65601151 | None:intergenic | 20.0% |
| !! | TTATTCATTCACTATGAATT+TGG | + | chr8.1:65602278-65602297 | MS.gene056195:intron | 20.0% |
| !! | TTGTATATTTGAAAGAAGAA+AGG | - | chr8.1:65602975-65602994 | None:intergenic | 20.0% |
| !!! | GAGGAATTTTTTTTATTCAT+TGG | + | chr8.1:65600634-65600653 | MS.gene056195:intron | 20.0% |
| ! | AAGTAAATGTTGTTACATTG+TGG | + | chr8.1:65601689-65601708 | MS.gene056195:intron | 25.0% |
| ! | ACATCATTATCTTGACTTAT+AGG | - | chr8.1:65601206-65601225 | None:intergenic | 25.0% |
| ! | AGATGAAAAAGAGTTAATCT+TGG | + | chr8.1:65600815-65600834 | MS.gene056195:CDS | 25.0% |
| ! | CATCATTACTTCAGAAAAAA+TGG | - | chr8.1:65601326-65601345 | None:intergenic | 25.0% |
| ! | GAACATCATTATAGTAATTG+AGG | - | chr8.1:65602247-65602266 | None:intergenic | 25.0% |
| ! | GGTTATTGGAAAATTTATGT+AGG | + | chr8.1:65600783-65600802 | MS.gene056195:intron | 25.0% |
| ! | GTTATGCATACTAATTGTAT+AGG | + | chr8.1:65602712-65602731 | MS.gene056195:intron | 25.0% |
| ! | TCTCAAAAATGAAAAGTCAA+TGG | - | chr8.1:65600979-65600998 | None:intergenic | 25.0% |
| ! | TGAATGAATAAACAACATCT+TGG | - | chr8.1:65602269-65602288 | None:intergenic | 25.0% |
| ! | TGGAAAATTTATGTAGGAAT+TGG | + | chr8.1:65600789-65600808 | MS.gene056195:intron | 25.0% |
| ! | TTATAAGGGATTCTATTGTT+GGG | + | chr8.1:65603244-65603263 | MS.gene056195:CDS | 25.0% |
| ! | TTGAATTTGTGAAGCAAATT+AGG | - | chr8.1:65601917-65601936 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTAGATTTTGAG+AGG | - | chr8.1:65602891-65602910 | None:intergenic | 25.0% |
| !!! | TTAATGTTGATGATGGTTAT+TGG | + | chr8.1:65600769-65600788 | MS.gene056195:intron | 25.0% |
| !!! | TTTTAACTTATCTACAGTTC+TGG | - | chr8.1:65602541-65602560 | None:intergenic | 25.0% |
| AAATGATTGCAATCTCATCT+TGG | + | chr8.1:65603199-65603218 | MS.gene056195:intron | 30.0% | |
| CATTAATGCATTCGTTTCAT+AGG | + | chr8.1:65603059-65603078 | MS.gene056195:intron | 30.0% | |
| GACATAAAAACTTGTGGTAA+AGG | + | chr8.1:65602317-65602336 | MS.gene056195:CDS | 30.0% | |
| GACTTATAGGTGTAAAATTG+AGG | - | chr8.1:65601193-65601212 | None:intergenic | 30.0% | |
| GTTATAAGGGATTCTATTGT+TGG | + | chr8.1:65603243-65603262 | MS.gene056195:CDS | 30.0% | |
| TAAAGTGACAGTAAATTTGG+AGG | + | chr8.1:65602006-65602025 | MS.gene056195:CDS | 30.0% | |
| TAGATGATGATCACTTTGTT+TGG | + | chr8.1:65602080-65602099 | MS.gene056195:CDS | 30.0% | |
| TGAATCACAAAGATTTGTAG+AGG | + | chr8.1:65600615-65600634 | MS.gene056195:intron | 30.0% | |
| TTATCTAAGTTTGTCTAGCT+AGG | + | chr8.1:65601663-65601682 | MS.gene056195:intron | 30.0% | |
| TTTCAGGACATAAAAACTTG+TGG | + | chr8.1:65602311-65602330 | MS.gene056195:intron | 30.0% | |
| TTTGACATCACTCTTAAATG+TGG | + | chr8.1:65602343-65602362 | MS.gene056195:CDS | 30.0% | |
| ! | ATTTGGGTGATTTTCTTTTC+AGG | + | chr8.1:65602295-65602314 | MS.gene056195:intron | 30.0% |
| ! | GAGATTGTTAATGTTGATGA+TGG | + | chr8.1:65600762-65600781 | MS.gene056195:intron | 30.0% |
| !! | AAAGAGTTAATCTTGGTGTT+AGG | + | chr8.1:65600822-65600841 | MS.gene056195:CDS | 30.0% |
| !! | AATGGTTGGTAATTGGTAAA+CGG | - | chr8.1:65602596-65602615 | None:intergenic | 30.0% |
| !! | ATTTTTGTATCGATGGTTGT+TGG | + | chr8.1:65600729-65600748 | MS.gene056195:intron | 30.0% |
| !! | CATTGAGAATTTAGCTTGTT+TGG | + | chr8.1:65602749-65602768 | MS.gene056195:intron | 30.0% |
| !!! | ATTTTTTGCTGACTTTGCTA+GGG | + | chr8.1:65603412-65603431 | MS.gene056195:CDS | 30.0% |
| !!! | TATGCTGATTTTTGTATCGA+TGG | + | chr8.1:65600722-65600741 | MS.gene056195:intron | 30.0% |
| AAAGAGAAAGAGAGAAACCT+TGG | - | chr8.1:65600423-65600442 | None:intergenic | 35.0% | |
| AAAGGGATGCAAAATTTGCA+AGG | + | chr8.1:65601428-65601447 | MS.gene056195:CDS | 35.0% | |
| AAATTTGGAGGTTGCAAAGT+CGG | + | chr8.1:65602018-65602037 | MS.gene056195:CDS | 35.0% | |
| AACAGAATGCTATAGTTCTC+TGG | + | chr8.1:65601389-65601408 | MS.gene056195:intron | 35.0% | |
| AAGGGATGCAAAATTTGCAA+GGG | + | chr8.1:65601429-65601448 | MS.gene056195:CDS | 35.0% | |
| CACTCTTAAATGTGGTAGTT+TGG | + | chr8.1:65602351-65602370 | MS.gene056195:CDS | 35.0% | |
| CATTGAAGGTTAAGAGGAAA+GGG | + | chr8.1:65601455-65601474 | MS.gene056195:CDS | 35.0% | |
| CTATGGCAAAACATTTGAAG+AGG | + | chr8.1:65602162-65602181 | MS.gene056195:CDS | 35.0% | |
| CTTTATGAACTTGTCTTGAG+TGG | - | chr8.1:65602428-65602447 | None:intergenic | 35.0% | |
| GACATAGAAATGCTCAACAA+AGG | + | chr8.1:65600844-65600863 | MS.gene056195:CDS | 35.0% | |
| GTTCTTCAGACATATGATGT+TGG | + | chr8.1:65601938-65601957 | MS.gene056195:intron | 35.0% | |
| GTTTCTTAGTCACACAGAAA+AGG | + | chr8.1:65601635-65601654 | MS.gene056195:intron | 35.0% | |
| TACCTTTGCGAAATGTTTCT+CGG | - | chr8.1:65602390-65602409 | None:intergenic | 35.0% | |
| TAGAAATGCTCAACAAAGGA+AGG | + | chr8.1:65600848-65600867 | MS.gene056195:CDS | 35.0% | |
| TAGAATCCCTTATAACCTGT+TGG | - | chr8.1:65603239-65603258 | None:intergenic | 35.0% | |
| TATAATCGACCATCTTTCCA+AGG | - | chr8.1:65602931-65602950 | None:intergenic | 35.0% | |
| TATGCACCAACAGGTTATAA+GGG | + | chr8.1:65603230-65603249 | MS.gene056195:intron | 35.0% | |
| TCTACAATGAACTCTTTCCT+TGG | + | chr8.1:65602911-65602930 | MS.gene056195:intron | 35.0% | |
| TTACCAATTACCAACCATTG+CGG | + | chr8.1:65602597-65602616 | MS.gene056195:intron | 35.0% | |
| TTGAAAATTAGACTCCGCAA+TGG | - | chr8.1:65602614-65602633 | None:intergenic | 35.0% | |
| ! | TCTAAAATCACCAGAGAGTT+CGG | - | chr8.1:65600931-65600950 | None:intergenic | 35.0% |
| !! | AGTCTTGATGATGATGTCAT+TGG | + | chr8.1:65603366-65603385 | MS.gene056195:CDS | 35.0% |
| !! | GGTGTTATGCAGATTTTAGT+GGG | + | chr8.1:65601959-65601978 | MS.gene056195:intron | 35.0% |
| !! | TGTCACTTTATTATGCCTGT+AGG | - | chr8.1:65601996-65602015 | None:intergenic | 35.0% |
| !!! | GATTTTTTGCTGACTTTGCT+AGG | + | chr8.1:65603411-65603430 | MS.gene056195:CDS | 35.0% |
| !!! | TGGTGTTATGCAGATTTTAG+TGG | + | chr8.1:65601958-65601977 | MS.gene056195:intron | 35.0% |
| AAATTAGACTCCGCAATGGT+TGG | - | chr8.1:65602610-65602629 | None:intergenic | 40.0% | |
| ACCTTTGCGAAATGTTTCTC+GGG | - | chr8.1:65602389-65602408 | None:intergenic | 40.0% | |
| ATTTGCAAGGGATGCATTGA+AGG | + | chr8.1:65601441-65601460 | MS.gene056195:CDS | 40.0% | |
| CGTCTTAGAAATGCTTTCCA+AGG | + | chr8.1:65600403-65600422 | MS.gene056195:intron | 40.0% | |
| CTATGCACCAACAGGTTATA+AGG | + | chr8.1:65603229-65603248 | MS.gene056195:intron | 40.0% | |
| CTGACTGCCATCAAATGATT+CGG | - | chr8.1:65601526-65601545 | None:intergenic | 40.0% | |
| GAACTCTTTCCTTGGAAAGA+TGG | + | chr8.1:65602919-65602938 | MS.gene056195:intron | 40.0% | |
| GCATTGAAGGTTAAGAGGAA+AGG | + | chr8.1:65601454-65601473 | MS.gene056195:CDS | 40.0% | |
| TCTCTTTGATTGCTCACTTG+AGG | + | chr8.1:65601561-65601580 | MS.gene056195:CDS | 40.0% | |
| TGATGTCATTGGAGATACCT+CGG | + | chr8.1:65603377-65603396 | MS.gene056195:CDS | 40.0% | |
| TGTAGGATGCAAAAGTTTCG+CGG | - | chr8.1:65602135-65602154 | None:intergenic | 40.0% | |
| TTAGGAGAAGGAACAATCTC+TGG | - | chr8.1:65600370-65600389 | None:intergenic | 40.0% | |
| TTGTTTGGATACTTAGCACC+AGG | + | chr8.1:65602095-65602114 | MS.gene056195:CDS | 40.0% | |
| TTTGCCATAGAGTTGCTTGT+AGG | - | chr8.1:65602152-65602171 | None:intergenic | 40.0% | |
| ! | AATTTTGCATCCCTTTCTGG+TGG | - | chr8.1:65601424-65601443 | None:intergenic | 40.0% |
| ! | GCAAATTTTGCATCCCTTTC+TGG | - | chr8.1:65601427-65601446 | None:intergenic | 40.0% |
| !! | CATGTCCTTACTTTTGTGAG+TGG | - | chr8.1:65601613-65601632 | None:intergenic | 40.0% |
| AAAATCCATGTAGTCACCCG+AGG | - | chr8.1:65603397-65603416 | None:intergenic | 45.0% | |
| AGACGTTCAGTGTCTGTGTT+AGG | - | chr8.1:65600388-65600407 | None:intergenic | 45.0% | |
| AGGGATTCTATTGTTGGGCT+AGG | + | chr8.1:65603249-65603268 | MS.gene056195:CDS | 45.0% | |
| ATGCAAAAGTTTCGCGGATC+TGG | - | chr8.1:65602129-65602148 | None:intergenic | 45.0% | |
| CCTTTGCGAAATGTTTCTCG+GGG | - | chr8.1:65602388-65602407 | None:intergenic | 45.0% | |
| CTCAGCCACTCACAAAAGTA+AGG | + | chr8.1:65601605-65601624 | MS.gene056195:intron | 45.0% | |
| CTTTGATTGCTCACTTGAGG+AGG | + | chr8.1:65601564-65601583 | MS.gene056195:CDS | 45.0% | |
| GACTTGTGATCCACCAGAAA+GGG | + | chr8.1:65601411-65601430 | MS.gene056195:CDS | 45.0% | |
| GATCAAACAGCTGCAGATTC+TGG | + | chr8.1:65601477-65601496 | MS.gene056195:CDS | 45.0% | |
| GATGTCATTGGAGATACCTC+GGG | + | chr8.1:65603378-65603397 | MS.gene056195:CDS | 45.0% | |
| GCATCCTACAAGCAACTCTA+TGG | + | chr8.1:65602145-65602164 | MS.gene056195:CDS | 45.0% | |
| GCTAAAGCTCTATAGCGTAG+CGG | + | chr8.1:65601711-65601730 | MS.gene056195:intron | 45.0% | |
| GGGATGCATTGAAGGTTAAG+AGG | + | chr8.1:65601449-65601468 | MS.gene056195:CDS | 45.0% | |
| GTCGAGTCCGAATCATTTGA+TGG | + | chr8.1:65601516-65601535 | MS.gene056195:CDS | 45.0% | |
| GTTCACTTCTATGCACCAAC+AGG | + | chr8.1:65603221-65603240 | MS.gene056195:intron | 45.0% | |
| TCAGTGTCTGTGTTAGGAGA+AGG | - | chr8.1:65600382-65600401 | None:intergenic | 45.0% | |
| TTGCTAGGGAAAGGACCAAA+GGG | + | chr8.1:65603426-65603445 | MS.gene056195:CDS | 45.0% | |
| TTTGCTAGGGAAAGGACCAA+AGG | + | chr8.1:65603425-65603444 | MS.gene056195:CDS | 45.0% | |
| ! | CGAATCATTTGATGGCAGTC+AGG | + | chr8.1:65601524-65601543 | MS.gene056195:CDS | 45.0% |
| !! | ACTCCGCAATGGTTGGTAAT+TGG | - | chr8.1:65602603-65602622 | None:intergenic | 45.0% |
| !! | TTGCTGACTTTGCTAGGGAA+AGG | + | chr8.1:65603417-65603436 | MS.gene056195:CDS | 45.0% |
| !!! | TTTTTTATGTTTTTATTAAT+GGG | + | chr8.1:65600549-65600568 | MS.gene056195:intron | 5.0% |
| AGATACCTCGGGTGACTACA+TGG | + | chr8.1:65603389-65603408 | MS.gene056195:CDS | 50.0% | |
| CCCCGAGAAACATTTCGCAA+AGG | + | chr8.1:65602385-65602404 | MS.gene056195:CDS | 50.0% | |
| CGTCTTCAATCCGAACTCTC+TGG | + | chr8.1:65600918-65600937 | MS.gene056195:CDS | 50.0% | |
| GCGGATCTGGAAAACATTCC+TGG | - | chr8.1:65602116-65602135 | None:intergenic | 50.0% | |
| GGACTTGTGATCCACCAGAA+AGG | + | chr8.1:65601410-65601429 | MS.gene056195:CDS | 50.0% | |
| TGGGCTTAGTAAGCTCCTAC+AGG | + | chr8.1:65601978-65601997 | MS.gene056195:CDS | 50.0% | |
| TGTGAGTGGCTGAGAAACTG+AGG | - | chr8.1:65601599-65601618 | None:intergenic | 50.0% | |
| ! | TCATTTGATGGCAGTCAGGC+AGG | + | chr8.1:65601528-65601547 | MS.gene056195:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 65600349 | 65603455 | 65600349 | ID=MS.gene056195 |
| chr8.1 | mRNA | 65600349 | 65603455 | 65600349 | ID=MS.gene056195.t1;Parent=MS.gene056195 |
| chr8.1 | exon | 65600349 | 65600403 | 65600349 | ID=MS.gene056195.t1.exon1;Parent=MS.gene056195.t1 |
| chr8.1 | CDS | 65600349 | 65600403 | 65600349 | ID=cds.MS.gene056195.t1;Parent=MS.gene056195.t1 |
| chr8.1 | exon | 65600805 | 65600950 | 65600805 | ID=MS.gene056195.t1.exon2;Parent=MS.gene056195.t1 |
| chr8.1 | CDS | 65600805 | 65600950 | 65600805 | ID=cds.MS.gene056195.t1;Parent=MS.gene056195.t1 |
| chr8.1 | exon | 65601394 | 65601621 | 65601394 | ID=MS.gene056195.t1.exon3;Parent=MS.gene056195.t1 |
| chr8.1 | CDS | 65601394 | 65601621 | 65601394 | ID=cds.MS.gene056195.t1;Parent=MS.gene056195.t1 |
| chr8.1 | exon | 65601971 | 65602183 | 65601971 | ID=MS.gene056195.t1.exon4;Parent=MS.gene056195.t1 |
| chr8.1 | CDS | 65601971 | 65602183 | 65601971 | ID=cds.MS.gene056195.t1;Parent=MS.gene056195.t1 |
| chr8.1 | exon | 65602317 | 65602406 | 65602317 | ID=MS.gene056195.t1.exon5;Parent=MS.gene056195.t1 |
| chr8.1 | CDS | 65602317 | 65602406 | 65602317 | ID=cds.MS.gene056195.t1;Parent=MS.gene056195.t1 |
| chr8.1 | exon | 65603243 | 65603455 | 65603243 | ID=MS.gene056195.t1.exon6;Parent=MS.gene056195.t1 |
| chr8.1 | CDS | 65603243 | 65603455 | 65603243 | ID=cds.MS.gene056195.t1;Parent=MS.gene056195.t1 |
| Gene Sequence |
| Protein sequence |
