Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016972.t1 | XP_003617250.1 | 97.7 | 131 | 3 | 0 | 26 | 156 | 10 | 140 | 3.00E-64 | 254.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016972.t1 | Q6NMM1 | 71.0 | 131 | 38 | 0 | 26 | 156 | 10 | 140 | 5.3e-54 | 211.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016972.t1 | B7FGH0 | 97.7 | 131 | 3 | 0 | 26 | 156 | 10 | 140 | 2.1e-64 | 254.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene70870 | MS.gene016972 | PPI |
MS.gene038188 | MS.gene016972 | PPI |
MS.gene47744 | MS.gene016972 | PPI |
MS.gene54399 | MS.gene016972 | PPI |
MS.gene016972 | MS.gene70870 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016972.t1 | MTR_5g089500 | 97.710 | 131 | 3 | 0 | 26 | 156 | 10 | 140 | 7.67e-85 | 245 |
MS.gene016972.t1 | MTR_0180s0070 | 90.000 | 130 | 13 | 0 | 27 | 156 | 6 | 135 | 3.68e-80 | 233 |
MS.gene016972.t1 | MTR_7g006340 | 49.495 | 99 | 50 | 0 | 40 | 138 | 23 | 121 | 1.69e-30 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016972.t1 | AT5G01430 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene016972.t1 | AT5G01430 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene016972.t1 | AT3G49420 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene016972.t1 | AT3G49420 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene016972.t1 | AT3G49420 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene016972.t1 | AT3G03180 | 70.992 | 131 | 38 | 0 | 26 | 156 | 10 | 140 | 2.72e-68 | 203 |
MS.gene016972.t1 | AT3G03180 | 70.588 | 119 | 35 | 0 | 26 | 144 | 10 | 128 | 3.93e-60 | 184 |
MS.gene016972.t1 | AT3G03180 | 70.588 | 102 | 30 | 0 | 55 | 156 | 1 | 102 | 5.78e-52 | 160 |
MS.gene016972.t1 | AT1G05785 | 50.862 | 116 | 57 | 0 | 27 | 142 | 4 | 119 | 3.60e-36 | 122 |
MS.gene016972.t1 | AT1G05785 | 49.573 | 117 | 59 | 0 | 26 | 142 | 9 | 125 | 5.05e-36 | 121 |
MS.gene016972.t1 | AT1G05785 | 49.573 | 117 | 59 | 0 | 26 | 142 | 9 | 125 | 5.05e-36 | 121 |
MS.gene016972.t1 | AT1G05785 | 49.573 | 117 | 59 | 0 | 26 | 142 | 9 | 125 | 5.05e-36 | 121 |
MS.gene016972.t1 | AT1G05785 | 49.580 | 119 | 60 | 0 | 26 | 144 | 9 | 127 | 6.61e-36 | 122 |
MS.gene016972.t1 | AT1G05785 | 49.580 | 119 | 60 | 0 | 26 | 144 | 9 | 127 | 6.61e-36 | 122 |
MS.gene016972.t1 | AT1G05785 | 49.153 | 118 | 60 | 0 | 26 | 143 | 9 | 126 | 9.36e-36 | 120 |
Find 43 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGTTCTTGATTCTCATTT+TGG | 0.178412 | 5.2:+75945235 | MS.gene016972:CDS |
CTACAGAAGATTCCTGTTCT+TGG | 0.248496 | 5.2:+75945425 | MS.gene016972:CDS |
ATGGGTTCATCGTACTATTC+AGG | 0.273677 | 5.2:+75945291 | MS.gene016972:CDS |
TGATATTGTGCAGTGGATTC+TGG | 0.291832 | 5.2:+75945384 | MS.gene016972:intron |
GAGATTGGATTAGGATTAAC+TGG | 0.303542 | 5.2:+75944847 | MS.gene016972:intron |
GGACAATCTCATTTGGTATT+GGG | 0.315840 | 5.2:+75945216 | MS.gene016972:CDS |
GGGACAATCTCATTTGGTAT+TGG | 0.355467 | 5.2:+75945215 | MS.gene016972:CDS |
AAATAAAGATGCAGAGGAAA+AGG | 0.392209 | 5.2:+75944144 | None:intergenic |
GGATTAGGATTAACTGGCTT+CGG | 0.400449 | 5.2:+75944853 | MS.gene016972:CDS |
GGCATGATTATTGAGGCATA+TGG | 0.406214 | 5.2:+75945272 | MS.gene016972:CDS |
AGAGGAAAAGGGTGGGCATT+GGG | 0.407793 | 5.2:+75944156 | MS.gene016972:CDS |
TGCAATGCAGAGATTGGATT+AGG | 0.413661 | 5.2:+75944838 | MS.gene016972:intron |
TACTAGGGGACAATCTCATT+TGG | 0.414175 | 5.2:+75945209 | MS.gene016972:intron |
AATAAGGTCCTGTTTGTGTC+TGG | 0.422295 | 5.2:+75945038 | MS.gene016972:intron |
CAGTTCTTTGACCGCTATAG+AGG | 0.428923 | 5.2:+75945796 | MS.gene016972:intron |
AGGATACTCCAGACACAAAC+AGG | 0.436220 | 5.2:-75945046 | None:intergenic |
GGACTTCAGTCCAATGGTTA+AGG | 0.441990 | 5.2:-75945066 | None:intergenic |
TCAATAATCATGCCCAGAAT+AGG | 0.450454 | 5.2:-75945263 | None:intergenic |
CGACAAGGGATTGCTAGCTA+TGG | 0.453721 | 5.2:+75944912 | MS.gene016972:CDS |
CAGAGGAAAAGGGTGGGCAT+TGG | 0.464075 | 5.2:+75944155 | MS.gene016972:CDS |
AGAAGATTCCTGTTCTTGGT+TGG | 0.471560 | 5.2:+75945429 | MS.gene016972:CDS |
AATAAAGATGCAGAGGAAAA+GGG | 0.474714 | 5.2:+75944145 | None:intergenic |
GCATGATTATTGAGGCATAT+GGG | 0.487465 | 5.2:+75945273 | MS.gene016972:CDS |
TGAATGATCCAACCAAGAAC+AGG | 0.491986 | 5.2:-75945437 | None:intergenic |
ATTGTCTTCTTCTTCGACAA+GGG | 0.497551 | 5.2:+75944898 | MS.gene016972:CDS |
CTATGCAATTCTTCATGAAA+CGG | 0.519907 | 5.2:+75945090 | MS.gene016972:CDS |
ATACATACCGATCGGATGAA+TGG | 0.521034 | 5.2:-75945464 | None:intergenic |
GGGTTGGTTTGGGAGAGACT+AGG | 0.532750 | 5.2:+75944191 | MS.gene016972:CDS |
TATTCTGGGCATGATTATTG+AGG | 0.537787 | 5.2:+75945265 | MS.gene016972:CDS |
GACAAGGGATTGCTAGCTAT+GGG | 0.542863 | 5.2:+75944913 | MS.gene016972:CDS |
CATAGTGGACTTCAGTCCAA+TGG | 0.554726 | 5.2:-75945072 | None:intergenic |
TCTGGAGTATCCTTAACCAT+TGG | 0.562272 | 5.2:+75945056 | MS.gene016972:CDS |
TTTCATGAAGAATTGCATAG+TGG | 0.568040 | 5.2:-75945087 | None:intergenic |
CAGTGGATTCTGGCCTACAT+TGG | 0.568474 | 5.2:+75945394 | MS.gene016972:intron |
GATTGTCTTCTTCTTCGACA+AGG | 0.595545 | 5.2:+75944897 | MS.gene016972:CDS |
CAAAGATCTCAGTGTTACAC+AGG | 0.608390 | 5.2:-75945829 | None:intergenic |
TCAACAGCCATTCATCCGAT+CGG | 0.621934 | 5.2:+75945457 | MS.gene016972:CDS |
TTATATAAATAAAGATGCAG+AGG | 0.631215 | 5.2:+75944138 | None:intergenic |
CGAAGAAGAAGACAATCCCA+AGG | 0.650628 | 5.2:-75944891 | None:intergenic |
CTAGGCTCTCTAATTCCTAG+AGG | 0.652922 | 5.2:+75944209 | MS.gene016972:CDS |
AAAGATGCAGAGGAAAAGGG+TGG | 0.658582 | 5.2:+75944148 | None:intergenic |
AAGATGCAGAGGAAAAGGGT+GGG | 0.696484 | 5.2:+75944149 | None:intergenic |
GCACTCGTTTACCTCTATAG+CGG | 0.745219 | 5.2:-75945807 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGATTATAGCATAATAATAA+GGG | - | chr5.2:75944285-75944304 | None:intergenic | 15.0% |
!! | TAAAAAAGTAAAAGGTAAAT+GGG | - | chr5.2:75945191-75945210 | None:intergenic | 15.0% |
!!! | ATTTTTGTACATTACATATT+TGG | + | chr5.2:75944740-75944759 | MS.gene016972:intron | 15.0% |
!! | AAATACCATAGAATTATCAT+CGG | + | chr5.2:75944308-75944327 | MS.gene016972:intron | 20.0% |
!! | AACTATATCACGTTATAAAT+AGG | - | chr5.2:75944635-75944654 | None:intergenic | 20.0% |
!! | ACAATAAGCAATTAGATTAT+TGG | - | chr5.2:75944515-75944534 | None:intergenic | 20.0% |
!! | AGATTCAGTTTATAAATTTC+AGG | - | chr5.2:75945756-75945775 | None:intergenic | 20.0% |
!! | ATGATAATTCTATGGTATTT+GGG | - | chr5.2:75944308-75944327 | None:intergenic | 20.0% |
!! | GAGATTATAGCATAATAATA+AGG | - | chr5.2:75944286-75944305 | None:intergenic | 20.0% |
!! | GTAAAAAAGTAAAAGGTAAA+TGG | - | chr5.2:75945192-75945211 | None:intergenic | 20.0% |
!! | TGATCTATTATTATTGATAC+AGG | - | chr5.2:75944260-75944279 | None:intergenic | 20.0% |
!!! | TACCTTTTACTTTTTTACTA+GGG | + | chr5.2:75945194-75945213 | MS.gene016972:intron | 20.0% |
!!! | TTACCTTTTACTTTTTTACT+AGG | + | chr5.2:75945193-75945212 | MS.gene016972:intron | 20.0% |
! | AAATACCGATGATAATTCTA+TGG | - | chr5.2:75944316-75944335 | None:intergenic | 25.0% |
! | AATATGCTATAAGCTAATGA+TGG | + | chr5.2:75945360-75945379 | MS.gene016972:intron | 25.0% |
! | ATCTTTATGTTGCTCAAATA+AGG | + | chr5.2:75945022-75945041 | MS.gene016972:intron | 25.0% |
! | ATTTAGTCAAAACAATGCTT+CGG | - | chr5.2:75944708-75944727 | None:intergenic | 25.0% |
! | GATGATAATTCTATGGTATT+TGG | - | chr5.2:75944309-75944328 | None:intergenic | 25.0% |
! | TCAATAGTAGTAAATGTGTA+AGG | - | chr5.2:75945541-75945560 | None:intergenic | 25.0% |
! | TGAAGAATGGAAAAAGATTT+AGG | + | chr5.2:75945695-75945714 | MS.gene016972:intron | 25.0% |
!! | AGGAACATTGATTATTGATA+TGG | - | chr5.2:75945569-75945588 | None:intergenic | 25.0% |
!! | GTATATTTTTCTCTTTCCTT+GGG | + | chr5.2:75944875-75944894 | MS.gene016972:CDS | 25.0% |
!!! | ACCTTTTACTTTTTTACTAG+GGG | + | chr5.2:75945195-75945214 | MS.gene016972:intron | 25.0% |
!!! | TCATCATGTTGATTTTCTTT+AGG | + | chr5.2:75944561-75944580 | MS.gene016972:intron | 25.0% |
AACAAGCAGTAAACTGATAA+TGG | - | chr5.2:75945134-75945153 | None:intergenic | 30.0% | |
ACAATCATAGTGTTAGATAC+TGG | - | chr5.2:75944352-75944371 | None:intergenic | 30.0% | |
ACTTTCACAATACTGAAGAA+TGG | + | chr5.2:75945682-75945701 | MS.gene016972:intron | 30.0% | |
CATTGAGATATGATTGTGTA+TGG | - | chr5.2:75944539-75944558 | None:intergenic | 30.0% | |
CTATGCAATTCTTCATGAAA+CGG | + | chr5.2:75945090-75945109 | MS.gene016972:CDS | 30.0% | |
TAAATGGGAGTTATTTACCA+TGG | - | chr5.2:75945176-75945195 | None:intergenic | 30.0% | |
TCCCCTAGTAAAAAAGTAAA+AGG | - | chr5.2:75945199-75945218 | None:intergenic | 30.0% | |
TTTAAATCAACTAAAAGCCG+TGG | - | chr5.2:75944448-75944467 | None:intergenic | 30.0% | |
TTTAGTCAAAACAATGCTTC+GGG | - | chr5.2:75944707-75944726 | None:intergenic | 30.0% | |
TTTCATGAAGAATTGCATAG+TGG | - | chr5.2:75945090-75945109 | None:intergenic | 30.0% | |
! | AGATTTCCATTAGCTTCATT+AGG | - | chr5.2:75944491-75944510 | None:intergenic | 30.0% |
! | ATTTTACTGCCTTTATGCTA+TGG | + | chr5.2:75944664-75944683 | MS.gene016972:intron | 30.0% |
! | CATGAAACGGAGTAATTTTA+AGG | + | chr5.2:75945103-75945122 | MS.gene016972:CDS | 30.0% |
! | GGTATATTTTTCTCTTTCCT+TGG | + | chr5.2:75944874-75944893 | MS.gene016972:CDS | 30.0% |
!! | GTTGATTTTCTTTAGGTTCT+TGG | + | chr5.2:75944568-75944587 | MS.gene016972:intron | 30.0% |
!!! | TAACATCTATTTTAATGCCC+TGG | + | chr5.2:75944998-75945017 | MS.gene016972:intron | 30.0% |
ATCTGATTCTTGTAGCATGT+CGG | + | chr5.2:75944422-75944441 | MS.gene016972:intron | 35.0% | |
ATGATGAGACCATAGCATAA+AGG | - | chr5.2:75944676-75944695 | None:intergenic | 35.0% | |
ATTGTCTTCTTCTTCGACAA+GGG | + | chr5.2:75944898-75944917 | MS.gene016972:CDS | 35.0% | |
CAGTATTGTGAAAGTTTAGC+AGG | - | chr5.2:75945677-75945696 | None:intergenic | 35.0% | |
GCATGATTATTGAGGCATAT+GGG | + | chr5.2:75945273-75945292 | MS.gene016972:CDS | 35.0% | |
GGACAATCTCATTTGGTATT+GGG | + | chr5.2:75945216-75945235 | MS.gene016972:CDS | 35.0% | |
TATCGCAAATACATACCGAT+CGG | - | chr5.2:75945475-75945494 | None:intergenic | 35.0% | |
TATTCTGGGCATGATTATTG+AGG | + | chr5.2:75945265-75945284 | MS.gene016972:CDS | 35.0% | |
TCAATAATCATGCCCAGAAT+AGG | - | chr5.2:75945266-75945285 | None:intergenic | 35.0% | |
TGAGCAACATAAAGATACCA+GGG | - | chr5.2:75945018-75945037 | None:intergenic | 35.0% | |
TGTAGAAAAACAGCCAATGT+AGG | - | chr5.2:75945410-75945429 | None:intergenic | 35.0% | |
TTGAGCAACATAAAGATACC+AGG | - | chr5.2:75945019-75945038 | None:intergenic | 35.0% | |
! | ATCGTACTATTCAGGTTTAG+TGG | + | chr5.2:75945299-75945318 | MS.gene016972:intron | 35.0% |
! | GAGATTGGATTAGGATTAAC+TGG | + | chr5.2:75944847-75944866 | MS.gene016972:intron | 35.0% |
! | GCATTGGGTATTTTGTATGT+GGG | + | chr5.2:75944171-75944190 | MS.gene016972:CDS | 35.0% |
! | GGGTTCTTGATTCTCATTTT+GGG | + | chr5.2:75945236-75945255 | MS.gene016972:CDS | 35.0% |
! | TGGGTTCTTGATTCTCATTT+TGG | + | chr5.2:75945235-75945254 | MS.gene016972:CDS | 35.0% |
!! | GATTTTCTTTAGGTTCTTGG+TGG | + | chr5.2:75944571-75944590 | MS.gene016972:intron | 35.0% |
!! | TCTTGATTCTCATTTTGGGA+TGG | + | chr5.2:75945240-75945259 | MS.gene016972:CDS | 35.0% |
!!! | ATTTTGTATGTGGGTTGGTT+TGG | + | chr5.2:75944180-75944199 | MS.gene016972:CDS | 35.0% |
!!! | TTTTGTATGTGGGTTGGTTT+GGG | + | chr5.2:75944181-75944200 | MS.gene016972:CDS | 35.0% |
AATAAGGTCCTGTTTGTGTC+TGG | + | chr5.2:75945038-75945057 | MS.gene016972:intron | 40.0% | |
ACTTTCTGTCTTGTACTCCA+TGG | + | chr5.2:75945156-75945175 | MS.gene016972:intron | 40.0% | |
AGAAGATTCCTGTTCTTGGT+TGG | + | chr5.2:75945429-75945448 | MS.gene016972:CDS | 40.0% | |
AGAATCGACCAGAATCACTA+AGG | - | chr5.2:75945597-75945616 | None:intergenic | 40.0% | |
ATACATACCGATCGGATGAA+TGG | - | chr5.2:75945467-75945486 | None:intergenic | 40.0% | |
ATGCTATGGTCTCATCATAC+TGG | + | chr5.2:75944678-75944697 | MS.gene016972:intron | 40.0% | |
ATGGGTTCATCGTACTATTC+AGG | + | chr5.2:75945291-75945310 | MS.gene016972:CDS | 40.0% | |
CAGAAAAGTAACCAACCTCT+AGG | - | chr5.2:75944227-75944246 | None:intergenic | 40.0% | |
CCAGAATCACTAAGGATTTC+AGG | - | chr5.2:75945589-75945608 | None:intergenic | 40.0% | |
CCATCACCTAATGAAGCTAA+TGG | + | chr5.2:75944482-75944501 | MS.gene016972:intron | 40.0% | |
CCTGAAATCCTTAGTGATTC+TGG | + | chr5.2:75945586-75945605 | MS.gene016972:intron | 40.0% | |
CTACAGAAGATTCCTGTTCT+TGG | + | chr5.2:75945425-75945444 | MS.gene016972:CDS | 40.0% | |
GATTGTCTTCTTCTTCGACA+AGG | + | chr5.2:75944897-75944916 | MS.gene016972:CDS | 40.0% | |
GGCATGATTATTGAGGCATA+TGG | + | chr5.2:75945272-75945291 | MS.gene016972:CDS | 40.0% | |
GGGACAATCTCATTTGGTAT+TGG | + | chr5.2:75945215-75945234 | MS.gene016972:CDS | 40.0% | |
TACTAGGGGACAATCTCATT+TGG | + | chr5.2:75945209-75945228 | MS.gene016972:intron | 40.0% | |
TCAGCGAAGATTTAGTTGGA+AGG | - | chr5.2:75945514-75945533 | None:intergenic | 40.0% | |
TGAATGATCCAACCAAGAAC+AGG | - | chr5.2:75945440-75945459 | None:intergenic | 40.0% | |
TGCAATGCAGAGATTGGATT+AGG | + | chr5.2:75944838-75944857 | MS.gene016972:intron | 40.0% | |
TGCTTCAGCGAAGATTTAGT+TGG | - | chr5.2:75945518-75945537 | None:intergenic | 40.0% | |
! | CCATTAGCTTCATTAGGTGA+TGG | - | chr5.2:75944485-75944504 | None:intergenic | 40.0% |
! | GGATTAGGATTAACTGGCTT+CGG | + | chr5.2:75944853-75944872 | MS.gene016972:CDS | 40.0% |
! | TCTGGAGTATCCTTAACCAT+TGG | + | chr5.2:75945056-75945075 | MS.gene016972:CDS | 40.0% |
! | TGATATTGTGCAGTGGATTC+TGG | + | chr5.2:75945384-75945403 | MS.gene016972:intron | 40.0% |
! | TGATGGATGATATTGTGCAG+TGG | + | chr5.2:75945377-75945396 | MS.gene016972:intron | 40.0% |
! | TGGGTATTTTGTATGTGGGT+TGG | + | chr5.2:75944175-75944194 | MS.gene016972:CDS | 40.0% |
!! | GGCATTGGGTATTTTGTATG+TGG | + | chr5.2:75944170-75944189 | MS.gene016972:CDS | 40.0% |
!!! | ATTTTGGGATGGCCTATTCT+GGG | + | chr5.2:75945251-75945270 | MS.gene016972:CDS | 40.0% |
AGGATACTCCAGACACAAAC+AGG | - | chr5.2:75945049-75945068 | None:intergenic | 45.0% | |
AGTCAAAACAATGCTTCGGG+CGG | - | chr5.2:75944704-75944723 | None:intergenic | 45.0% | |
CAGTTCTTTGACCGCTATAG+AGG | + | chr5.2:75945796-75945815 | MS.gene016972:intron | 45.0% | |
CGAAGAAGAAGACAATCCCA+AGG | - | chr5.2:75944894-75944913 | None:intergenic | 45.0% | |
CTAGGCTCTCTAATTCCTAG+AGG | + | chr5.2:75944209-75944228 | MS.gene016972:CDS | 45.0% | |
GACAAGGGATTGCTAGCTAT+GGG | + | chr5.2:75944913-75944932 | MS.gene016972:CDS | 45.0% | |
GCACTCGTTTACCTCTATAG+CGG | - | chr5.2:75945810-75945829 | None:intergenic | 45.0% | |
GCTCTCTAATTCCTAGAGGT+TGG | + | chr5.2:75944213-75944232 | MS.gene016972:intron | 45.0% | |
GGACTTCAGTCCAATGGTTA+AGG | - | chr5.2:75945069-75945088 | None:intergenic | 45.0% | |
TCAACAGCCATTCATCCGAT+CGG | + | chr5.2:75945457-75945476 | MS.gene016972:CDS | 45.0% | |
TTGGCATGCAATGCAGAGAT+TGG | + | chr5.2:75944832-75944851 | MS.gene016972:intron | 45.0% | |
!! | CATAGTGGACTTCAGTCCAA+TGG | - | chr5.2:75945075-75945094 | None:intergenic | 45.0% |
!!! | CATTTTGGGATGGCCTATTC+TGG | + | chr5.2:75945250-75945269 | MS.gene016972:CDS | 45.0% |
!! | TTATATTTAATATATGTAAT+TGG | + | chr5.2:75944813-75944832 | MS.gene016972:intron | 5.0% |
AGAGGAAAAGGGTGGGCATT+GGG | + | chr5.2:75944156-75944175 | MS.gene016972:CDS | 50.0% | |
AGCGGTCAAAGAACTGCAAG+TGG | - | chr5.2:75945792-75945811 | None:intergenic | 50.0% | |
CGACAAGGGATTGCTAGCTA+TGG | + | chr5.2:75944912-75944931 | MS.gene016972:CDS | 50.0% | |
TTCTTGTAGCATGTCGGCCA+CGG | + | chr5.2:75944428-75944447 | MS.gene016972:intron | 50.0% | |
! | CAGTGGATTCTGGCCTACAT+TGG | + | chr5.2:75945394-75945413 | MS.gene016972:intron | 50.0% |
CAGAGGAAAAGGGTGGGCAT+TGG | + | chr5.2:75944155-75944174 | MS.gene016972:CDS | 55.0% | |
!! | GGGTTGGTTTGGGAGAGACT+AGG | + | chr5.2:75944191-75944210 | MS.gene016972:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 75944152 | 75945837 | 75944152 | ID=MS.gene016972 |
chr5.2 | mRNA | 75944152 | 75945837 | 75944152 | ID=MS.gene016972.t1;Parent=MS.gene016972 |
chr5.2 | exon | 75944152 | 75944230 | 75944152 | ID=MS.gene016972.t1.exon1;Parent=MS.gene016972.t1 |
chr5.2 | CDS | 75944152 | 75944230 | 75944152 | ID=cds.MS.gene016972.t1;Parent=MS.gene016972.t1 |
chr5.2 | exon | 75944848 | 75944939 | 75944848 | ID=MS.gene016972.t1.exon2;Parent=MS.gene016972.t1 |
chr5.2 | CDS | 75944848 | 75944939 | 75944848 | ID=cds.MS.gene016972.t1;Parent=MS.gene016972.t1 |
chr5.2 | exon | 75945044 | 75945124 | 75945044 | ID=MS.gene016972.t1.exon3;Parent=MS.gene016972.t1 |
chr5.2 | CDS | 75945044 | 75945124 | 75945044 | ID=cds.MS.gene016972.t1;Parent=MS.gene016972.t1 |
chr5.2 | exon | 75945215 | 75945312 | 75945215 | ID=MS.gene016972.t1.exon4;Parent=MS.gene016972.t1 |
chr5.2 | CDS | 75945215 | 75945312 | 75945215 | ID=cds.MS.gene016972.t1;Parent=MS.gene016972.t1 |
chr5.2 | exon | 75945397 | 75945478 | 75945397 | ID=MS.gene016972.t1.exon5;Parent=MS.gene016972.t1 |
chr5.2 | CDS | 75945397 | 75945478 | 75945397 | ID=cds.MS.gene016972.t1;Parent=MS.gene016972.t1 |
chr5.2 | exon | 75945799 | 75945837 | 75945799 | ID=MS.gene016972.t1.exon6;Parent=MS.gene016972.t1 |
chr5.2 | CDS | 75945799 | 75945837 | 75945799 | ID=cds.MS.gene016972.t1;Parent=MS.gene016972.t1 |
Gene Sequence |
Protein sequence |