Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47744.t1 | XP_003617250.1 | 97.7 | 131 | 3 | 0 | 26 | 156 | 10 | 140 | 3.00E-64 | 254.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47744.t1 | Q6NMM1 | 71.0 | 131 | 38 | 0 | 26 | 156 | 10 | 140 | 5.3e-54 | 211.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47744.t1 | B7FGH0 | 97.7 | 131 | 3 | 0 | 26 | 156 | 10 | 140 | 2.1e-64 | 254.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene47744 | MS.gene70870 | PPI |
MS.gene54399 | MS.gene47744 | PPI |
MS.gene038188 | MS.gene47744 | PPI |
MS.gene47744 | MS.gene016972 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47744.t1 | MTR_5g089500 | 97.710 | 131 | 3 | 0 | 26 | 156 | 10 | 140 | 7.67e-85 | 245 |
MS.gene47744.t1 | MTR_0180s0070 | 90.000 | 130 | 13 | 0 | 27 | 156 | 6 | 135 | 3.68e-80 | 233 |
MS.gene47744.t1 | MTR_7g006340 | 49.495 | 99 | 50 | 0 | 40 | 138 | 23 | 121 | 1.69e-30 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47744.t1 | AT5G01430 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene47744.t1 | AT5G01430 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene47744.t1 | AT3G49420 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene47744.t1 | AT3G49420 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene47744.t1 | AT3G49420 | 83.969 | 131 | 21 | 0 | 26 | 156 | 10 | 140 | 5.79e-76 | 223 |
MS.gene47744.t1 | AT3G03180 | 70.992 | 131 | 38 | 0 | 26 | 156 | 10 | 140 | 2.72e-68 | 203 |
MS.gene47744.t1 | AT3G03180 | 70.588 | 119 | 35 | 0 | 26 | 144 | 10 | 128 | 3.93e-60 | 184 |
MS.gene47744.t1 | AT3G03180 | 70.588 | 102 | 30 | 0 | 55 | 156 | 1 | 102 | 5.78e-52 | 160 |
MS.gene47744.t1 | AT1G05785 | 50.862 | 116 | 57 | 0 | 27 | 142 | 4 | 119 | 3.60e-36 | 122 |
MS.gene47744.t1 | AT1G05785 | 49.573 | 117 | 59 | 0 | 26 | 142 | 9 | 125 | 5.05e-36 | 121 |
MS.gene47744.t1 | AT1G05785 | 49.573 | 117 | 59 | 0 | 26 | 142 | 9 | 125 | 5.05e-36 | 121 |
MS.gene47744.t1 | AT1G05785 | 49.573 | 117 | 59 | 0 | 26 | 142 | 9 | 125 | 5.05e-36 | 121 |
MS.gene47744.t1 | AT1G05785 | 49.580 | 119 | 60 | 0 | 26 | 144 | 9 | 127 | 6.61e-36 | 122 |
MS.gene47744.t1 | AT1G05785 | 49.580 | 119 | 60 | 0 | 26 | 144 | 9 | 127 | 6.61e-36 | 122 |
MS.gene47744.t1 | AT1G05785 | 49.153 | 118 | 60 | 0 | 26 | 143 | 9 | 126 | 9.36e-36 | 120 |
Find 43 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGTTCTTGATTCTCATTT+TGG | 0.178412 | 2.3:+38073813 | MS.gene47744:CDS |
CTACAGAAGATTCCTGTTCT+TGG | 0.248496 | 2.3:+38074003 | MS.gene47744:CDS |
ATGGGTTCATCGTACTATTC+AGG | 0.273677 | 2.3:+38073869 | MS.gene47744:CDS |
TGATATTGTGCAGTGGATTC+TGG | 0.291832 | 2.3:+38073962 | MS.gene47744:intron |
GAGATTGGATTAGGATTAAC+TGG | 0.303542 | 2.3:+38073425 | MS.gene47744:intron |
GGACAATCTCATTTGGTATT+GGG | 0.315840 | 2.3:+38073794 | MS.gene47744:CDS |
GGGACAATCTCATTTGGTAT+TGG | 0.355467 | 2.3:+38073793 | MS.gene47744:CDS |
AAATAAAGATGCAGAGGAAA+AGG | 0.392209 | 2.3:+38072722 | None:intergenic |
GGATTAGGATTAACTGGCTT+CGG | 0.400449 | 2.3:+38073431 | MS.gene47744:CDS |
GGCATGATTATTGAGGCATA+TGG | 0.406214 | 2.3:+38073850 | MS.gene47744:CDS |
AGAGGAAAAGGGTGGGCATT+GGG | 0.407793 | 2.3:+38072734 | MS.gene47744:CDS |
TGCAATGCAGAGATTGGATT+AGG | 0.413661 | 2.3:+38073416 | MS.gene47744:intron |
TACTAGGGGACAATCTCATT+TGG | 0.414175 | 2.3:+38073787 | MS.gene47744:intron |
AATAAGGTCCTGTTTGTGTC+TGG | 0.422295 | 2.3:+38073616 | MS.gene47744:intron |
CAGTTCTTTGACCGCTATAG+AGG | 0.428923 | 2.3:+38074374 | MS.gene47744:intron |
AGGATACTCCAGACACAAAC+AGG | 0.436220 | 2.3:-38073624 | None:intergenic |
GGACTTCAGTCCAATGGTTA+AGG | 0.441990 | 2.3:-38073644 | None:intergenic |
TCAATAATCATGCCCAGAAT+AGG | 0.450454 | 2.3:-38073841 | None:intergenic |
CGACAAGGGATTGCTAGCTA+TGG | 0.453721 | 2.3:+38073490 | MS.gene47744:CDS |
CAGAGGAAAAGGGTGGGCAT+TGG | 0.464075 | 2.3:+38072733 | MS.gene47744:CDS |
AGAAGATTCCTGTTCTTGGT+TGG | 0.471560 | 2.3:+38074007 | MS.gene47744:CDS |
AATAAAGATGCAGAGGAAAA+GGG | 0.474714 | 2.3:+38072723 | None:intergenic |
GCATGATTATTGAGGCATAT+GGG | 0.487465 | 2.3:+38073851 | MS.gene47744:CDS |
TGAATGATCCAACCAAGAAC+AGG | 0.491986 | 2.3:-38074015 | None:intergenic |
ATTGTCTTCTTCTTCGACAA+GGG | 0.497551 | 2.3:+38073476 | MS.gene47744:CDS |
CTATGCAATTCTTCATGAAA+CGG | 0.519907 | 2.3:+38073668 | MS.gene47744:CDS |
ATACATACCGATCGGATGAA+TGG | 0.521034 | 2.3:-38074042 | None:intergenic |
GGGTTGGTTTGGGAGAGACT+AGG | 0.532750 | 2.3:+38072769 | MS.gene47744:CDS |
TATTCTGGGCATGATTATTG+AGG | 0.537787 | 2.3:+38073843 | MS.gene47744:CDS |
GACAAGGGATTGCTAGCTAT+GGG | 0.542863 | 2.3:+38073491 | MS.gene47744:CDS |
CATAGTGGACTTCAGTCCAA+TGG | 0.554726 | 2.3:-38073650 | None:intergenic |
TCTGGAGTATCCTTAACCAT+TGG | 0.562272 | 2.3:+38073634 | MS.gene47744:CDS |
TTTCATGAAGAATTGCATAG+TGG | 0.568040 | 2.3:-38073665 | None:intergenic |
CAGTGGATTCTGGCCTACAT+TGG | 0.568474 | 2.3:+38073972 | MS.gene47744:intron |
GATTGTCTTCTTCTTCGACA+AGG | 0.595545 | 2.3:+38073475 | MS.gene47744:CDS |
CAAAGATCTCAGTGTTACAC+AGG | 0.608390 | 2.3:-38074407 | None:intergenic |
TCAACAGCCATTCATCCGAT+CGG | 0.621934 | 2.3:+38074035 | MS.gene47744:CDS |
TTATATAAATAAAGATGCAG+AGG | 0.631215 | 2.3:+38072716 | None:intergenic |
CGAAGAAGAAGACAATCCCA+AGG | 0.650628 | 2.3:-38073469 | None:intergenic |
CTAGGCTCTCTAATTCCTAG+AGG | 0.652922 | 2.3:+38072787 | MS.gene47744:CDS |
AAAGATGCAGAGGAAAAGGG+TGG | 0.658582 | 2.3:+38072726 | None:intergenic |
AAGATGCAGAGGAAAAGGGT+GGG | 0.696484 | 2.3:+38072727 | None:intergenic |
GCACTCGTTTACCTCTATAG+CGG | 0.745219 | 2.3:-38074385 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGATTATAGCATAATAATAA+GGG | - | chr2.3:38072863-38072882 | None:intergenic | 15.0% |
!! | TAAAAAAGTAAAAGGTAAAT+GGG | - | chr2.3:38073769-38073788 | None:intergenic | 15.0% |
!!! | ATTTTTGTACATTACATATT+TGG | + | chr2.3:38073318-38073337 | MS.gene47744:intron | 15.0% |
!! | AAATACCATAGAATTATCAT+CGG | + | chr2.3:38072886-38072905 | MS.gene47744:intron | 20.0% |
!! | AACTATATCACGTTATAAAT+AGG | - | chr2.3:38073213-38073232 | None:intergenic | 20.0% |
!! | ACAATAAGCAATTAGATTAT+TGG | - | chr2.3:38073093-38073112 | None:intergenic | 20.0% |
!! | AGATTCAGTTTATAAATTTC+AGG | - | chr2.3:38074334-38074353 | None:intergenic | 20.0% |
!! | ATGATAATTCTATGGTATTT+GGG | - | chr2.3:38072886-38072905 | None:intergenic | 20.0% |
!! | GAGATTATAGCATAATAATA+AGG | - | chr2.3:38072864-38072883 | None:intergenic | 20.0% |
!! | GTAAAAAAGTAAAAGGTAAA+TGG | - | chr2.3:38073770-38073789 | None:intergenic | 20.0% |
!! | TGATCTATTATTATTGATAC+AGG | - | chr2.3:38072838-38072857 | None:intergenic | 20.0% |
!!! | TACCTTTTACTTTTTTACTA+GGG | + | chr2.3:38073772-38073791 | MS.gene47744:intron | 20.0% |
!!! | TTACCTTTTACTTTTTTACT+AGG | + | chr2.3:38073771-38073790 | MS.gene47744:intron | 20.0% |
! | AAATACCGATGATAATTCTA+TGG | - | chr2.3:38072894-38072913 | None:intergenic | 25.0% |
! | AATATGCTATAAGCTAATGA+TGG | + | chr2.3:38073938-38073957 | MS.gene47744:intron | 25.0% |
! | ATCTTTATGTTGCTCAAATA+AGG | + | chr2.3:38073600-38073619 | MS.gene47744:intron | 25.0% |
! | ATTTAGTCAAAACAATGCTT+CGG | - | chr2.3:38073286-38073305 | None:intergenic | 25.0% |
! | GATGATAATTCTATGGTATT+TGG | - | chr2.3:38072887-38072906 | None:intergenic | 25.0% |
! | TCAATAGTAGTAAATGTGTA+AGG | - | chr2.3:38074119-38074138 | None:intergenic | 25.0% |
! | TGAAGAATGGAAAAAGATTT+AGG | + | chr2.3:38074273-38074292 | MS.gene47744:intron | 25.0% |
!! | AGGAACATTGATTATTGATA+TGG | - | chr2.3:38074147-38074166 | None:intergenic | 25.0% |
!! | GTATATTTTTCTCTTTCCTT+GGG | + | chr2.3:38073453-38073472 | MS.gene47744:CDS | 25.0% |
!!! | ACCTTTTACTTTTTTACTAG+GGG | + | chr2.3:38073773-38073792 | MS.gene47744:intron | 25.0% |
!!! | TCATCATGTTGATTTTCTTT+AGG | + | chr2.3:38073139-38073158 | MS.gene47744:intron | 25.0% |
AACAAGCAGTAAACTGATAA+TGG | - | chr2.3:38073712-38073731 | None:intergenic | 30.0% | |
ACAATCATAGTGTTAGATAC+TGG | - | chr2.3:38072930-38072949 | None:intergenic | 30.0% | |
ACTTTCACAATACTGAAGAA+TGG | + | chr2.3:38074260-38074279 | MS.gene47744:intron | 30.0% | |
CATTGAGATATGATTGTGTA+TGG | - | chr2.3:38073117-38073136 | None:intergenic | 30.0% | |
CTATGCAATTCTTCATGAAA+CGG | + | chr2.3:38073668-38073687 | MS.gene47744:CDS | 30.0% | |
TAAATGGGAGTTATTTACCA+TGG | - | chr2.3:38073754-38073773 | None:intergenic | 30.0% | |
TCCCCTAGTAAAAAAGTAAA+AGG | - | chr2.3:38073777-38073796 | None:intergenic | 30.0% | |
TTTAAATCAACTAAAAGCCG+TGG | - | chr2.3:38073026-38073045 | None:intergenic | 30.0% | |
TTTAGTCAAAACAATGCTTC+GGG | - | chr2.3:38073285-38073304 | None:intergenic | 30.0% | |
TTTCATGAAGAATTGCATAG+TGG | - | chr2.3:38073668-38073687 | None:intergenic | 30.0% | |
! | AGATTTCCATTAGCTTCATT+AGG | - | chr2.3:38073069-38073088 | None:intergenic | 30.0% |
! | ATTTTACTGCCTTTATGCTA+TGG | + | chr2.3:38073242-38073261 | MS.gene47744:intron | 30.0% |
! | CATGAAACGGAGTAATTTTA+AGG | + | chr2.3:38073681-38073700 | MS.gene47744:CDS | 30.0% |
! | GGTATATTTTTCTCTTTCCT+TGG | + | chr2.3:38073452-38073471 | MS.gene47744:CDS | 30.0% |
!! | GTTGATTTTCTTTAGGTTCT+TGG | + | chr2.3:38073146-38073165 | MS.gene47744:intron | 30.0% |
!!! | TAACATCTATTTTAATGCCC+TGG | + | chr2.3:38073576-38073595 | MS.gene47744:intron | 30.0% |
ATCTGATTCTTGTAGCATGT+CGG | + | chr2.3:38073000-38073019 | MS.gene47744:intron | 35.0% | |
ATGATGAGACCATAGCATAA+AGG | - | chr2.3:38073254-38073273 | None:intergenic | 35.0% | |
ATTGTCTTCTTCTTCGACAA+GGG | + | chr2.3:38073476-38073495 | MS.gene47744:CDS | 35.0% | |
CAGTATTGTGAAAGTTTAGC+AGG | - | chr2.3:38074255-38074274 | None:intergenic | 35.0% | |
GCATGATTATTGAGGCATAT+GGG | + | chr2.3:38073851-38073870 | MS.gene47744:CDS | 35.0% | |
GGACAATCTCATTTGGTATT+GGG | + | chr2.3:38073794-38073813 | MS.gene47744:CDS | 35.0% | |
TATCGCAAATACATACCGAT+CGG | - | chr2.3:38074053-38074072 | None:intergenic | 35.0% | |
TATTCTGGGCATGATTATTG+AGG | + | chr2.3:38073843-38073862 | MS.gene47744:CDS | 35.0% | |
TCAATAATCATGCCCAGAAT+AGG | - | chr2.3:38073844-38073863 | None:intergenic | 35.0% | |
TGAGCAACATAAAGATACCA+GGG | - | chr2.3:38073596-38073615 | None:intergenic | 35.0% | |
TGTAGAAAAACAGCCAATGT+AGG | - | chr2.3:38073988-38074007 | None:intergenic | 35.0% | |
TTGAGCAACATAAAGATACC+AGG | - | chr2.3:38073597-38073616 | None:intergenic | 35.0% | |
! | ATCGTACTATTCAGGTTTAG+TGG | + | chr2.3:38073877-38073896 | MS.gene47744:intron | 35.0% |
! | GAGATTGGATTAGGATTAAC+TGG | + | chr2.3:38073425-38073444 | MS.gene47744:intron | 35.0% |
! | GCATTGGGTATTTTGTATGT+GGG | + | chr2.3:38072749-38072768 | MS.gene47744:CDS | 35.0% |
! | GGGTTCTTGATTCTCATTTT+GGG | + | chr2.3:38073814-38073833 | MS.gene47744:CDS | 35.0% |
! | TGGGTTCTTGATTCTCATTT+TGG | + | chr2.3:38073813-38073832 | MS.gene47744:CDS | 35.0% |
!! | GATTTTCTTTAGGTTCTTGG+TGG | + | chr2.3:38073149-38073168 | MS.gene47744:intron | 35.0% |
!! | TCTTGATTCTCATTTTGGGA+TGG | + | chr2.3:38073818-38073837 | MS.gene47744:CDS | 35.0% |
!!! | ATTTTGTATGTGGGTTGGTT+TGG | + | chr2.3:38072758-38072777 | MS.gene47744:CDS | 35.0% |
!!! | TTTTGTATGTGGGTTGGTTT+GGG | + | chr2.3:38072759-38072778 | MS.gene47744:CDS | 35.0% |
AATAAGGTCCTGTTTGTGTC+TGG | + | chr2.3:38073616-38073635 | MS.gene47744:intron | 40.0% | |
ACTTTCTGTCTTGTACTCCA+TGG | + | chr2.3:38073734-38073753 | MS.gene47744:intron | 40.0% | |
AGAAGATTCCTGTTCTTGGT+TGG | + | chr2.3:38074007-38074026 | MS.gene47744:CDS | 40.0% | |
AGAATCGACCAGAATCACTA+AGG | - | chr2.3:38074175-38074194 | None:intergenic | 40.0% | |
ATACATACCGATCGGATGAA+TGG | - | chr2.3:38074045-38074064 | None:intergenic | 40.0% | |
ATGCTATGGTCTCATCATAC+TGG | + | chr2.3:38073256-38073275 | MS.gene47744:intron | 40.0% | |
ATGGGTTCATCGTACTATTC+AGG | + | chr2.3:38073869-38073888 | MS.gene47744:CDS | 40.0% | |
CAGAAAAGTAACCAACCTCT+AGG | - | chr2.3:38072805-38072824 | None:intergenic | 40.0% | |
CCAGAATCACTAAGGATTTC+AGG | - | chr2.3:38074167-38074186 | None:intergenic | 40.0% | |
CCATCACCTAATGAAGCTAA+TGG | + | chr2.3:38073060-38073079 | MS.gene47744:intron | 40.0% | |
CCTGAAATCCTTAGTGATTC+TGG | + | chr2.3:38074164-38074183 | MS.gene47744:intron | 40.0% | |
CTACAGAAGATTCCTGTTCT+TGG | + | chr2.3:38074003-38074022 | MS.gene47744:CDS | 40.0% | |
GATTGTCTTCTTCTTCGACA+AGG | + | chr2.3:38073475-38073494 | MS.gene47744:CDS | 40.0% | |
GGCATGATTATTGAGGCATA+TGG | + | chr2.3:38073850-38073869 | MS.gene47744:CDS | 40.0% | |
GGGACAATCTCATTTGGTAT+TGG | + | chr2.3:38073793-38073812 | MS.gene47744:CDS | 40.0% | |
TACTAGGGGACAATCTCATT+TGG | + | chr2.3:38073787-38073806 | MS.gene47744:intron | 40.0% | |
TCAGCGAAGATTTAGTTGGA+AGG | - | chr2.3:38074092-38074111 | None:intergenic | 40.0% | |
TGAATGATCCAACCAAGAAC+AGG | - | chr2.3:38074018-38074037 | None:intergenic | 40.0% | |
TGCAATGCAGAGATTGGATT+AGG | + | chr2.3:38073416-38073435 | MS.gene47744:intron | 40.0% | |
TGCTTCAGCGAAGATTTAGT+TGG | - | chr2.3:38074096-38074115 | None:intergenic | 40.0% | |
! | CCATTAGCTTCATTAGGTGA+TGG | - | chr2.3:38073063-38073082 | None:intergenic | 40.0% |
! | GGATTAGGATTAACTGGCTT+CGG | + | chr2.3:38073431-38073450 | MS.gene47744:CDS | 40.0% |
! | TCTGGAGTATCCTTAACCAT+TGG | + | chr2.3:38073634-38073653 | MS.gene47744:CDS | 40.0% |
! | TGATATTGTGCAGTGGATTC+TGG | + | chr2.3:38073962-38073981 | MS.gene47744:intron | 40.0% |
! | TGATGGATGATATTGTGCAG+TGG | + | chr2.3:38073955-38073974 | MS.gene47744:intron | 40.0% |
! | TGGGTATTTTGTATGTGGGT+TGG | + | chr2.3:38072753-38072772 | MS.gene47744:CDS | 40.0% |
!! | GGCATTGGGTATTTTGTATG+TGG | + | chr2.3:38072748-38072767 | MS.gene47744:CDS | 40.0% |
!!! | ATTTTGGGATGGCCTATTCT+GGG | + | chr2.3:38073829-38073848 | MS.gene47744:CDS | 40.0% |
AGGATACTCCAGACACAAAC+AGG | - | chr2.3:38073627-38073646 | None:intergenic | 45.0% | |
AGTCAAAACAATGCTTCGGG+CGG | - | chr2.3:38073282-38073301 | None:intergenic | 45.0% | |
CAGTTCTTTGACCGCTATAG+AGG | + | chr2.3:38074374-38074393 | MS.gene47744:intron | 45.0% | |
CGAAGAAGAAGACAATCCCA+AGG | - | chr2.3:38073472-38073491 | None:intergenic | 45.0% | |
CTAGGCTCTCTAATTCCTAG+AGG | + | chr2.3:38072787-38072806 | MS.gene47744:CDS | 45.0% | |
GACAAGGGATTGCTAGCTAT+GGG | + | chr2.3:38073491-38073510 | MS.gene47744:CDS | 45.0% | |
GCACTCGTTTACCTCTATAG+CGG | - | chr2.3:38074388-38074407 | None:intergenic | 45.0% | |
GCTCTCTAATTCCTAGAGGT+TGG | + | chr2.3:38072791-38072810 | MS.gene47744:intron | 45.0% | |
GGACTTCAGTCCAATGGTTA+AGG | - | chr2.3:38073647-38073666 | None:intergenic | 45.0% | |
TCAACAGCCATTCATCCGAT+CGG | + | chr2.3:38074035-38074054 | MS.gene47744:CDS | 45.0% | |
TTGGCATGCAATGCAGAGAT+TGG | + | chr2.3:38073410-38073429 | MS.gene47744:intron | 45.0% | |
!! | CATAGTGGACTTCAGTCCAA+TGG | - | chr2.3:38073653-38073672 | None:intergenic | 45.0% |
!!! | CATTTTGGGATGGCCTATTC+TGG | + | chr2.3:38073828-38073847 | MS.gene47744:CDS | 45.0% |
!! | TTATATTTAATATATGTAAT+TGG | + | chr2.3:38073391-38073410 | MS.gene47744:intron | 5.0% |
AGAGGAAAAGGGTGGGCATT+GGG | + | chr2.3:38072734-38072753 | MS.gene47744:CDS | 50.0% | |
AGCGGTCAAAGAACTGCAAG+TGG | - | chr2.3:38074370-38074389 | None:intergenic | 50.0% | |
CGACAAGGGATTGCTAGCTA+TGG | + | chr2.3:38073490-38073509 | MS.gene47744:CDS | 50.0% | |
TTCTTGTAGCATGTCGGCCA+CGG | + | chr2.3:38073006-38073025 | MS.gene47744:intron | 50.0% | |
! | CAGTGGATTCTGGCCTACAT+TGG | + | chr2.3:38073972-38073991 | MS.gene47744:intron | 50.0% |
CAGAGGAAAAGGGTGGGCAT+TGG | + | chr2.3:38072733-38072752 | MS.gene47744:CDS | 55.0% | |
!! | GGGTTGGTTTGGGAGAGACT+AGG | + | chr2.3:38072769-38072788 | MS.gene47744:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 38072730 | 38074415 | 38072730 | ID=MS.gene47744 |
chr2.3 | mRNA | 38072730 | 38074415 | 38072730 | ID=MS.gene47744.t1;Parent=MS.gene47744 |
chr2.3 | exon | 38072730 | 38072808 | 38072730 | ID=MS.gene47744.t1.exon1;Parent=MS.gene47744.t1 |
chr2.3 | CDS | 38072730 | 38072808 | 38072730 | ID=cds.MS.gene47744.t1;Parent=MS.gene47744.t1 |
chr2.3 | exon | 38073426 | 38073517 | 38073426 | ID=MS.gene47744.t1.exon2;Parent=MS.gene47744.t1 |
chr2.3 | CDS | 38073426 | 38073517 | 38073426 | ID=cds.MS.gene47744.t1;Parent=MS.gene47744.t1 |
chr2.3 | exon | 38073622 | 38073702 | 38073622 | ID=MS.gene47744.t1.exon3;Parent=MS.gene47744.t1 |
chr2.3 | CDS | 38073622 | 38073702 | 38073622 | ID=cds.MS.gene47744.t1;Parent=MS.gene47744.t1 |
chr2.3 | exon | 38073793 | 38073890 | 38073793 | ID=MS.gene47744.t1.exon4;Parent=MS.gene47744.t1 |
chr2.3 | CDS | 38073793 | 38073890 | 38073793 | ID=cds.MS.gene47744.t1;Parent=MS.gene47744.t1 |
chr2.3 | exon | 38073975 | 38074056 | 38073975 | ID=MS.gene47744.t1.exon5;Parent=MS.gene47744.t1 |
chr2.3 | CDS | 38073975 | 38074056 | 38073975 | ID=cds.MS.gene47744.t1;Parent=MS.gene47744.t1 |
chr2.3 | exon | 38074377 | 38074415 | 38074377 | ID=MS.gene47744.t1.exon6;Parent=MS.gene47744.t1 |
chr2.3 | CDS | 38074377 | 38074415 | 38074377 | ID=cds.MS.gene47744.t1;Parent=MS.gene47744.t1 |
Gene Sequence |
Protein sequence |