Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70870.t1 | XP_003617250.1 | 98.5 | 130 | 2 | 0 | 45 | 174 | 11 | 140 | 1.60E-63 | 252.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70870.t1 | Q6NMM1 | 72.3 | 130 | 36 | 0 | 45 | 174 | 11 | 140 | 2.9e-53 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70870.t1 | B7FGH0 | 98.5 | 130 | 2 | 0 | 45 | 174 | 11 | 140 | 1.2e-63 | 252.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47744 | MS.gene70870 | PPI |
| MS.gene54399 | MS.gene70870 | PPI |
| MS.gene70870 | MS.gene016972 | PPI |
| MS.gene038188 | MS.gene70870 | PPI |
| MS.gene016972 | MS.gene70870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70870.t1 | MTR_5g089500 | 98.462 | 130 | 2 | 0 | 45 | 174 | 11 | 140 | 5.07e-85 | 246 |
| MS.gene70870.t1 | MTR_0180s0070 | 90.769 | 130 | 12 | 0 | 45 | 174 | 6 | 135 | 8.73e-81 | 236 |
| MS.gene70870.t1 | MTR_7g006340 | 51.515 | 99 | 48 | 0 | 58 | 156 | 23 | 121 | 7.29e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70870.t1 | AT5G01430 | 84.615 | 130 | 20 | 0 | 45 | 174 | 11 | 140 | 3.22e-76 | 224 |
| MS.gene70870.t1 | AT5G01430 | 84.615 | 130 | 20 | 0 | 45 | 174 | 11 | 140 | 3.22e-76 | 224 |
| MS.gene70870.t1 | AT3G49420 | 84.615 | 130 | 20 | 0 | 45 | 174 | 11 | 140 | 3.22e-76 | 224 |
| MS.gene70870.t1 | AT3G49420 | 84.615 | 130 | 20 | 0 | 45 | 174 | 11 | 140 | 3.22e-76 | 224 |
| MS.gene70870.t1 | AT3G49420 | 84.615 | 130 | 20 | 0 | 45 | 174 | 11 | 140 | 3.22e-76 | 224 |
| MS.gene70870.t1 | AT3G03180 | 72.308 | 130 | 36 | 0 | 45 | 174 | 11 | 140 | 1.81e-68 | 204 |
| MS.gene70870.t1 | AT3G03180 | 72.034 | 118 | 33 | 0 | 45 | 162 | 11 | 128 | 3.40e-60 | 186 |
| MS.gene70870.t1 | AT3G03180 | 71.569 | 102 | 29 | 0 | 73 | 174 | 1 | 102 | 1.66e-52 | 163 |
| MS.gene70870.t1 | AT1G05785 | 50.435 | 115 | 57 | 0 | 44 | 158 | 3 | 117 | 2.57e-36 | 123 |
| MS.gene70870.t1 | AT1G05785 | 49.138 | 116 | 59 | 0 | 45 | 160 | 10 | 125 | 1.39e-35 | 121 |
| MS.gene70870.t1 | AT1G05785 | 49.138 | 116 | 59 | 0 | 45 | 160 | 10 | 125 | 1.39e-35 | 121 |
| MS.gene70870.t1 | AT1G05785 | 49.138 | 116 | 59 | 0 | 45 | 160 | 10 | 125 | 1.39e-35 | 121 |
| MS.gene70870.t1 | AT1G05785 | 49.153 | 118 | 60 | 0 | 45 | 162 | 10 | 127 | 2.07e-35 | 122 |
| MS.gene70870.t1 | AT1G05785 | 49.153 | 118 | 60 | 0 | 45 | 162 | 10 | 127 | 2.07e-35 | 122 |
| MS.gene70870.t1 | AT1G05785 | 48.718 | 117 | 60 | 0 | 45 | 161 | 10 | 126 | 2.41e-35 | 120 |
Find 52 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCGCCGGAATTCTTTC+TGG | 0.117404 | 5.3:+72151395 | MS.gene70870:CDS |
| TGGGTTCTTGATTCTCATTT+TGG | 0.178412 | 5.3:+72152330 | MS.gene70870:CDS |
| CTACAGAAGATTCCTGTTCT+TGG | 0.248496 | 5.3:+72152520 | MS.gene70870:CDS |
| TCAATAATCATGCCCAAAAT+AGG | 0.262568 | 5.3:-72152358 | None:intergenic |
| ATGGGTTCATCGTACTATTC+AGG | 0.273677 | 5.3:+72152386 | MS.gene70870:CDS |
| TGATATTGTGCAGTGGATTC+TGG | 0.291832 | 5.3:+72152479 | MS.gene70870:intron |
| GAGATTGGATTAGGATTAAC+TGG | 0.303542 | 5.3:+72151942 | MS.gene70870:intron |
| GGACGATCTCATTTGGTATT+GGG | 0.336695 | 5.3:+72152311 | MS.gene70870:CDS |
| CGCCGGAATTCTTTCTGGCC+TGG | 0.338399 | 5.3:+72151400 | MS.gene70870:CDS |
| GGGACGATCTCATTTGGTAT+TGG | 0.364200 | 5.3:+72152310 | MS.gene70870:CDS |
| GGCATGATTATTGAGGCATA+TGG | 0.393028 | 5.3:+72152367 | MS.gene70870:CDS |
| GGATTAGGATTAACTGGCTT+CGG | 0.400449 | 5.3:+72151948 | MS.gene70870:CDS |
| TGCAATGCAGAGATTGGATT+AGG | 0.405736 | 5.3:+72151933 | MS.gene70870:intron |
| TACTAGGGGACGATCTCATT+TGG | 0.410587 | 5.3:+72152304 | MS.gene70870:intron |
| GACCAGGCCAGAAAGAATTC+CGG | 0.416178 | 5.3:-72151402 | None:intergenic |
| GAAGATTCCTGTTCTTGGTT+GGG | 0.416637 | 5.3:+72152525 | MS.gene70870:CDS |
| AGAAGATTCCTGTTCTTGGT+TGG | 0.424267 | 5.3:+72152524 | MS.gene70870:CDS |
| CAGTTCTTTGACCGCTATAG+AGG | 0.428923 | 5.3:+72152886 | MS.gene70870:intron |
| AATAAGATCCTGTTTGTGTC+TGG | 0.430436 | 5.3:+72152133 | MS.gene70870:intron |
| AGGATACTCCAGACACAAAC+AGG | 0.436925 | 5.3:-72152141 | None:intergenic |
| GGACTTCAGTCCAATGGTTA+AGG | 0.441990 | 5.3:-72152161 | None:intergenic |
| TCTGGCCTGGTCTCTCTCAC+CGG | 0.468480 | 5.3:+72151413 | MS.gene70870:CDS |
| GCATGATTATTGAGGCATAT+GGG | 0.478094 | 5.3:+72152368 | MS.gene70870:CDS |
| CTGGTCTCTCTCACCGGTGG+TGG | 0.496848 | 5.3:+72151419 | MS.gene70870:CDS |
| ATTGTCTTCTTCTTCGACAA+GGG | 0.497551 | 5.3:+72151993 | MS.gene70870:CDS |
| TTGCACTTGCACCTCTTCGC+CGG | 0.498721 | 5.3:+72151383 | MS.gene70870:CDS |
| TGAATGACCCAACCAAGAAC+AGG | 0.507636 | 5.3:-72152532 | None:intergenic |
| CGACAAGGGATTGCTAGCCA+TGG | 0.519419 | 5.3:+72152007 | MS.gene70870:CDS |
| ATACATACCGATCGGATGAA+TGG | 0.521034 | 5.3:-72152559 | None:intergenic |
| TGGTTGGCGCGAGGGAAAAG+AGG | 0.536418 | 5.3:+72151318 | MS.gene70870:CDS |
| CAGTGGATTCTGGCCTACAC+TGG | 0.536464 | 5.3:+72152489 | MS.gene70870:intron |
| GAAGGTCGTGGTTGGCGCGA+GGG | 0.546338 | 5.3:+72151310 | MS.gene70870:CDS |
| CATAGTGGACTTCAGTCCAA+TGG | 0.554726 | 5.3:-72152167 | None:intergenic |
| TCTGGAGTATCCTTAACCAT+TGG | 0.562272 | 5.3:+72152151 | MS.gene70870:CDS |
| AGCTCGTCAATCACCACCAC+CGG | 0.569484 | 5.3:-72151432 | None:intergenic |
| TGAAGGTCGTGGTTGGCGCG+AGG | 0.576769 | 5.3:+72151309 | MS.gene70870:CDS |
| GACCGGTGAGATGAAGGTCG+TGG | 0.581841 | 5.3:+72151298 | None:intergenic |
| GACAAGGGATTGCTAGCCAT+GGG | 0.582815 | 5.3:+72152008 | MS.gene70870:CDS |
| GGTGAGATGAAGGTCGTGGT+TGG | 0.585580 | 5.3:+72151302 | None:intergenic |
| GGCCTGGTCTCTCTCACCGG+TGG | 0.591111 | 5.3:+72151416 | MS.gene70870:CDS |
| GATTGTCTTCTTCTTCGACA+AGG | 0.595545 | 5.3:+72151992 | MS.gene70870:CDS |
| CACCACCGGTGAGAGAGACC+AGG | 0.600838 | 5.3:-72151418 | None:intergenic |
| CAAGAAACATACATTTCCCA+TGG | 0.607237 | 5.3:-72152024 | None:intergenic |
| CAAAGATCTCAGTGTTACAC+AGG | 0.608390 | 5.3:-72152919 | None:intergenic |
| CAGAAAGAATTCCGGCGAAG+AGG | 0.610880 | 5.3:-72151394 | None:intergenic |
| TCAACAGCCATTCATCCGAT+CGG | 0.621934 | 5.3:+72152552 | MS.gene70870:CDS |
| TGTATAATGTCAGATCTGAA+AGG | 0.628679 | 5.3:+72151350 | MS.gene70870:CDS |
| CGAAGAAGAAGACAATCCCA+AGG | 0.650628 | 5.3:-72151986 | None:intergenic |
| CAGATCTGAAAGGTCAGCGG+TGG | 0.651002 | 5.3:+72151360 | MS.gene70870:CDS |
| TTGGCGCGAGGGAAAAGAGG+AGG | 0.669919 | 5.3:+72151321 | MS.gene70870:CDS |
| TGTCAGATCTGAAAGGTCAG+CGG | 0.714326 | 5.3:+72151357 | MS.gene70870:CDS |
| GCACTCGTTTACCTCTATAG+CGG | 0.745219 | 5.3:-72152897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTTAATATATGTGAT+TGG | + | chr5.3:72151908-72151927 | MS.gene70870:intron | 10.0% |
| !!! | ATTTTTGTAAATTACATACT+TGG | + | chr5.3:72151835-72151854 | MS.gene70870:intron | 15.0% |
| !! | AATATGCTATAAGCTAATAA+TGG | + | chr5.3:72152455-72152474 | MS.gene70870:intron | 20.0% |
| !! | GAACATTTGATTATTTGATA+TGG | - | chr5.3:72152665-72152684 | None:intergenic | 20.0% |
| !! | GTAATTTCCAATAAAATCTA+GGG | - | chr5.3:72151632-72151651 | None:intergenic | 20.0% |
| !! | TAATTTCCAATAAAATCTAG+GGG | - | chr5.3:72151631-72151650 | None:intergenic | 20.0% |
| !!! | ATACCTTTTACTTTTTTACT+AGG | + | chr5.3:72152288-72152307 | MS.gene70870:intron | 20.0% |
| !!! | TAAAAAAGTAAAAGGTATGT+GGG | - | chr5.3:72152286-72152305 | None:intergenic | 20.0% |
| !!! | TACCTTTTACTTTTTTACTA+GGG | + | chr5.3:72152289-72152308 | MS.gene70870:intron | 20.0% |
| ! | ATTTAGTCAAAACAAAGCTT+CGG | - | chr5.3:72151804-72151823 | None:intergenic | 25.0% |
| ! | CGTAATTTCCAATAAAATCT+AGG | - | chr5.3:72151633-72151652 | None:intergenic | 25.0% |
| ! | GTGTGTTTATATATCATTTC+TGG | + | chr5.3:72151688-72151707 | MS.gene70870:intron | 25.0% |
| ! | TACTATATCACGTTACAAAT+AGG | - | chr5.3:72151726-72151745 | None:intergenic | 25.0% |
| ! | TCTATAGTAGTAAATGTGTA+AGG | - | chr5.3:72152637-72152656 | None:intergenic | 25.0% |
| ! | TGAAAATATGTTGACAAAGT+GGG | - | chr5.3:72151874-72151893 | None:intergenic | 25.0% |
| ! | TTGAAAATATGTTGACAAAG+TGG | - | chr5.3:72151875-72151894 | None:intergenic | 25.0% |
| ! | TTTACTGTTTAGAGATGAAA+GGG | + | chr5.3:72151548-72151567 | MS.gene70870:intron | 25.0% |
| !! | AAAAAAGTAAAAGGTATGTG+GGG | - | chr5.3:72152285-72152304 | None:intergenic | 25.0% |
| !! | ATTATACCCCTAGATTTTAT+TGG | + | chr5.3:72151622-72151641 | MS.gene70870:intron | 25.0% |
| !! | GTAAAAAAGTAAAAGGTATG+TGG | - | chr5.3:72152287-72152306 | None:intergenic | 25.0% |
| !! | GTATATTTTTCTCTTTCCTT+GGG | + | chr5.3:72151970-72151989 | MS.gene70870:CDS | 25.0% |
| !!! | ACCTTTTACTTTTTTACTAG+GGG | + | chr5.3:72152290-72152309 | MS.gene70870:intron | 25.0% |
| AACAAACAGTGAACTGATAA+CGG | - | chr5.3:72152229-72152248 | None:intergenic | 30.0% | |
| AACTTTCACAATACTGAAGA+TGG | + | chr5.3:72152772-72152791 | MS.gene70870:intron | 30.0% | |
| AGGCTCAGTTTATAAATTTC+AGG | - | chr5.3:72152846-72152865 | None:intergenic | 30.0% | |
| CTGAAGATGGAAAAAGATTT+AGG | + | chr5.3:72152785-72152804 | MS.gene70870:intron | 30.0% | |
| CTTCATGAAAAATTGCATAG+TGG | - | chr5.3:72152185-72152204 | None:intergenic | 30.0% | |
| GTTTACTGTTTAGAGATGAA+AGG | + | chr5.3:72151547-72151566 | MS.gene70870:intron | 30.0% | |
| TATTGCAAATACATACCGAT+CGG | - | chr5.3:72152570-72152589 | None:intergenic | 30.0% | |
| TCAATAATCATGCCCAAAAT+AGG | - | chr5.3:72152361-72152380 | None:intergenic | 30.0% | |
| TCATCTCTAAACAGTAAACA+CGG | - | chr5.3:72151546-72151565 | None:intergenic | 30.0% | |
| TCCCCTAGTAAAAAAGTAAA+AGG | - | chr5.3:72152294-72152313 | None:intergenic | 30.0% | |
| TGTATAATGTCAGATCTGAA+AGG | + | chr5.3:72151350-72151369 | MS.gene70870:CDS | 30.0% | |
| TTTAGTCAAAACAAAGCTTC+GGG | - | chr5.3:72151803-72151822 | None:intergenic | 30.0% | |
| ! | AAAAAGTAAAAGGTATGTGG+GGG | - | chr5.3:72152284-72152303 | None:intergenic | 30.0% |
| ! | ATTTTACTGCCTTTATGCTA+TGG | + | chr5.3:72151760-72151779 | MS.gene70870:intron | 30.0% |
| ! | CTATGCAATTTTTCATGAAG+CGG | + | chr5.3:72152185-72152204 | MS.gene70870:CDS | 30.0% |
| ! | GGTATATTTTTCTCTTTCCT+TGG | + | chr5.3:72151969-72151988 | MS.gene70870:CDS | 30.0% |
| !! | TATTTTGGGCATGATTATTG+AGG | + | chr5.3:72152360-72152379 | MS.gene70870:CDS | 30.0% |
| !!! | TAACATCTATTTTAATGCCC+TGG | + | chr5.3:72152093-72152112 | MS.gene70870:intron | 30.0% |
| AATAAGATCCTGTTTGTGTC+TGG | + | chr5.3:72152133-72152152 | MS.gene70870:intron | 35.0% | |
| AGAATCGATCAGAATCACTA+CGG | - | chr5.3:72152695-72152714 | None:intergenic | 35.0% | |
| ATGAAAGGGAGAAAGAAAGA+GGG | + | chr5.3:72151562-72151581 | MS.gene70870:intron | 35.0% | |
| ATGATGAGACCATAGCATAA+AGG | - | chr5.3:72151772-72151791 | None:intergenic | 35.0% | |
| ATTGTCTTCTTCTTCGACAA+GGG | + | chr5.3:72151993-72152012 | MS.gene70870:CDS | 35.0% | |
| CAAGAAACATACATTTCCCA+TGG | - | chr5.3:72152027-72152046 | None:intergenic | 35.0% | |
| CAAGTGGACAGAAAATTTGA+AGG | - | chr5.3:72152866-72152885 | None:intergenic | 35.0% | |
| GCATGATTATTGAGGCATAT+GGG | + | chr5.3:72152368-72152387 | MS.gene70870:CDS | 35.0% | |
| TGAGCAACATAATGATACCA+GGG | - | chr5.3:72152113-72152132 | None:intergenic | 35.0% | |
| TTAGTCAAAACAAAGCTTCG+GGG | - | chr5.3:72151802-72151821 | None:intergenic | 35.0% | |
| TTGAGCAACATAATGATACC+AGG | - | chr5.3:72152114-72152133 | None:intergenic | 35.0% | |
| ! | ATCGTACTATTCAGGTTTAG+TGG | + | chr5.3:72152394-72152413 | MS.gene70870:intron | 35.0% |
| ! | CATGAAGCGGAGTAATTTTA+AGG | + | chr5.3:72152198-72152217 | MS.gene70870:CDS | 35.0% |
| ! | GAGATTGGATTAGGATTAAC+TGG | + | chr5.3:72151942-72151961 | MS.gene70870:intron | 35.0% |
| ! | GGGTTCTTGATTCTCATTTT+GGG | + | chr5.3:72152331-72152350 | MS.gene70870:CDS | 35.0% |
| ! | TAATGGATGATATTGTGCAG+TGG | + | chr5.3:72152472-72152491 | MS.gene70870:intron | 35.0% |
| ! | TGGGTTCTTGATTCTCATTT+TGG | + | chr5.3:72152330-72152349 | MS.gene70870:CDS | 35.0% |
| !! | TCTTGATTCTCATTTTGGGA+TGG | + | chr5.3:72152335-72152354 | MS.gene70870:CDS | 35.0% |
| !!! | ATTTTGGGATGGCCTATTTT+GGG | + | chr5.3:72152346-72152365 | MS.gene70870:CDS | 35.0% |
| AGAAGATTCCTGTTCTTGGT+TGG | + | chr5.3:72152524-72152543 | MS.gene70870:CDS | 40.0% | |
| ATACATACCGATCGGATGAA+TGG | - | chr5.3:72152562-72152581 | None:intergenic | 40.0% | |
| ATGCTATGGTCTCATCATAC+TGG | + | chr5.3:72151774-72151793 | MS.gene70870:intron | 40.0% | |
| ATGGGTTCATCGTACTATTC+AGG | + | chr5.3:72152386-72152405 | MS.gene70870:CDS | 40.0% | |
| CTACAGAAGATTCCTGTTCT+TGG | + | chr5.3:72152520-72152539 | MS.gene70870:CDS | 40.0% | |
| GAAGATTCCTGTTCTTGGTT+GGG | + | chr5.3:72152525-72152544 | MS.gene70870:CDS | 40.0% | |
| GATGAAAGGGAGAAAGAAAG+AGG | + | chr5.3:72151561-72151580 | MS.gene70870:intron | 40.0% | |
| GATTGTCTTCTTCTTCGACA+AGG | + | chr5.3:72151992-72152011 | MS.gene70870:CDS | 40.0% | |
| GGACGATCTCATTTGGTATT+GGG | + | chr5.3:72152311-72152330 | MS.gene70870:CDS | 40.0% | |
| GGCATGATTATTGAGGCATA+TGG | + | chr5.3:72152367-72152386 | MS.gene70870:CDS | 40.0% | |
| TAGTCAAAACAAAGCTTCGG+GGG | - | chr5.3:72151801-72151820 | None:intergenic | 40.0% | |
| TATGTGGGGGTTATTTACCA+TGG | - | chr5.3:72152271-72152290 | None:intergenic | 40.0% | |
| TCAGAATCACTACGGATTTC+AGG | - | chr5.3:72152687-72152706 | None:intergenic | 40.0% | |
| TGCAATGCAGAGATTGGATT+AGG | + | chr5.3:72151933-72151952 | MS.gene70870:intron | 40.0% | |
| TGTAGAAAAACAGCCAGTGT+AGG | - | chr5.3:72152505-72152524 | None:intergenic | 40.0% | |
| TTGGTATGCAATGCAGAGAT+TGG | + | chr5.3:72151927-72151946 | MS.gene70870:intron | 40.0% | |
| ! | ACTCTCTGTTTTGTACTCCA+TGG | + | chr5.3:72152251-72152270 | MS.gene70870:intron | 40.0% |
| ! | GGATTAGGATTAACTGGCTT+CGG | + | chr5.3:72151948-72151967 | MS.gene70870:CDS | 40.0% |
| ! | TCTGGAGTATCCTTAACCAT+TGG | + | chr5.3:72152151-72152170 | MS.gene70870:CDS | 40.0% |
| ! | TGATATTGTGCAGTGGATTC+TGG | + | chr5.3:72152479-72152498 | MS.gene70870:intron | 40.0% |
| !!! | CATTTTGGGATGGCCTATTT+TGG | + | chr5.3:72152345-72152364 | MS.gene70870:CDS | 40.0% |
| AGACACAAATACGACACCAG+CGG | - | chr5.3:72151662-72151681 | None:intergenic | 45.0% | |
| AGGATACTCCAGACACAAAC+AGG | - | chr5.3:72152144-72152163 | None:intergenic | 45.0% | |
| AGTCAAAACAAAGCTTCGGG+GGG | - | chr5.3:72151800-72151819 | None:intergenic | 45.0% | |
| CAGCGAAGATCTTAGTTGGA+AGG | - | chr5.3:72152609-72152628 | None:intergenic | 45.0% | |
| CAGTTCTTTGACCGCTATAG+AGG | + | chr5.3:72152886-72152905 | MS.gene70870:intron | 45.0% | |
| CGAAGAAGAAGACAATCCCA+AGG | - | chr5.3:72151989-72152008 | None:intergenic | 45.0% | |
| GCACTCGTTTACCTCTATAG+CGG | - | chr5.3:72152900-72152919 | None:intergenic | 45.0% | |
| GCTTCAGCGAAGATCTTAGT+TGG | - | chr5.3:72152613-72152632 | None:intergenic | 45.0% | |
| GGACTTCAGTCCAATGGTTA+AGG | - | chr5.3:72152164-72152183 | None:intergenic | 45.0% | |
| GGGACGATCTCATTTGGTAT+TGG | + | chr5.3:72152310-72152329 | MS.gene70870:CDS | 45.0% | |
| TACTAGGGGACGATCTCATT+TGG | + | chr5.3:72152304-72152323 | MS.gene70870:intron | 45.0% | |
| TCAACAGCCATTCATCCGAT+CGG | + | chr5.3:72152552-72152571 | MS.gene70870:CDS | 45.0% | |
| TGAATGACCCAACCAAGAAC+AGG | - | chr5.3:72152535-72152554 | None:intergenic | 45.0% | |
| TGTCAGATCTGAAAGGTCAG+CGG | + | chr5.3:72151357-72151376 | MS.gene70870:CDS | 45.0% | |
| !! | CATAGTGGACTTCAGTCCAA+TGG | - | chr5.3:72152170-72152189 | None:intergenic | 45.0% |
| !! | GATTCGATGGTGGATTAGGA+CGG | + | chr5.3:72151471-72151490 | MS.gene70870:intron | 45.0% |
| !! | TTGGGATTCGATGGTGGATT+AGG | + | chr5.3:72151467-72151486 | MS.gene70870:intron | 45.0% |
| AGCGGTCAAAGAACTGCAAG+TGG | - | chr5.3:72152882-72152901 | None:intergenic | 50.0% | |
| ATTGACGAGCTGGAGAAGAG+GGG | + | chr5.3:72151444-72151463 | MS.gene70870:intron | 50.0% | |
| CAGAAAGAATTCCGGCGAAG+AGG | - | chr5.3:72151397-72151416 | None:intergenic | 50.0% | |
| CTCTTCGCCGGAATTCTTTC+TGG | + | chr5.3:72151395-72151414 | MS.gene70870:CDS | 50.0% | |
| GACAAGGGATTGCTAGCCAT+GGG | + | chr5.3:72152008-72152027 | MS.gene70870:CDS | 50.0% | |
| GACCAGGCCAGAAAGAATTC+CGG | - | chr5.3:72151405-72151424 | None:intergenic | 50.0% | |
| GATTGACGAGCTGGAGAAGA+GGG | + | chr5.3:72151443-72151462 | MS.gene70870:intron | 50.0% | |
| GGAAATTACGAGATTGCCGC+TGG | + | chr5.3:72151643-72151662 | MS.gene70870:intron | 50.0% | |
| GGGTAGACGATAAGAGAGAG+AGG | + | chr5.3:72151582-72151601 | MS.gene70870:intron | 50.0% | |
| TGATTGACGAGCTGGAGAAG+AGG | + | chr5.3:72151442-72151461 | MS.gene70870:intron | 50.0% | |
| AGCTCGTCAATCACCACCAC+CGG | - | chr5.3:72151435-72151454 | None:intergenic | 55.0% | |
| CAGATCTGAAAGGTCAGCGG+TGG | + | chr5.3:72151360-72151379 | MS.gene70870:CDS | 55.0% | |
| CGACAAGGGATTGCTAGCCA+TGG | + | chr5.3:72152007-72152026 | MS.gene70870:CDS | 55.0% | |
| GAAGAGGGGTTGGGATTCGA+TGG | + | chr5.3:72151458-72151477 | MS.gene70870:intron | 55.0% | |
| TTGCACTTGCACCTCTTCGC+CGG | + | chr5.3:72151383-72151402 | MS.gene70870:CDS | 55.0% | |
| ! | CAGTGGATTCTGGCCTACAC+TGG | + | chr5.3:72152489-72152508 | MS.gene70870:intron | 55.0% |
| !! | TCGATGGTGGATTAGGACGG+CGG | + | chr5.3:72151474-72151493 | MS.gene70870:intron | 55.0% |
| ACGAGCTGGAGAAGAGGGGT+TGG | + | chr5.3:72151448-72151467 | MS.gene70870:intron | 60.0% | |
| CAGACCACCACCACCATCAC+CGG | - | chr5.3:72151521-72151540 | None:intergenic | 60.0% | |
| CGAGCTGGAGAAGAGGGGTT+GGG | + | chr5.3:72151449-72151468 | MS.gene70870:intron | 60.0% | |
| GAGGGGTTGGGATTCGATGG+TGG | + | chr5.3:72151461-72151480 | MS.gene70870:intron | 60.0% | |
| GGGGTGGTGACTGATGTCGA+CGG | + | chr5.3:72151495-72151514 | MS.gene70870:intron | 60.0% | |
| TCTGGCCTGGTCTCTCTCAC+CGG | + | chr5.3:72151413-72151432 | MS.gene70870:CDS | 60.0% | |
| TGGTGACTGATGTCGACGGC+CGG | + | chr5.3:72151499-72151518 | MS.gene70870:intron | 60.0% | |
| TGGTTGGCGCGAGGGAAAAG+AGG | + | chr5.3:72151318-72151337 | MS.gene70870:CDS | 60.0% | |
| TTGGCGCGAGGGAAAAGAGG+AGG | + | chr5.3:72151321-72151340 | MS.gene70870:CDS | 60.0% | |
| ! | CGCCGGAATTCTTTCTGGCC+TGG | + | chr5.3:72151400-72151419 | MS.gene70870:CDS | 60.0% |
| ! | GGTGGTGGTGATTGACGAGC+TGG | + | chr5.3:72151434-72151453 | MS.gene70870:intron | 60.0% |
| !! | CGATGGTGGATTAGGACGGC+GGG | + | chr5.3:72151475-72151494 | MS.gene70870:intron | 60.0% |
| !! | GATGGTGGATTAGGACGGCG+GGG | + | chr5.3:72151476-72151495 | MS.gene70870:intron | 60.0% |
| CACCACCGGTGAGAGAGACC+AGG | - | chr5.3:72151421-72151440 | None:intergenic | 65.0% | |
| CTGATGTCGACGGCCGGTGA+TGG | + | chr5.3:72151505-72151524 | MS.gene70870:intron | 65.0% | |
| CTGGTCTCTCTCACCGGTGG+TGG | + | chr5.3:72151419-72151438 | MS.gene70870:CDS | 65.0% | |
| GAAGGTCGTGGTTGGCGCGA+GGG | + | chr5.3:72151310-72151329 | MS.gene70870:CDS | 65.0% | |
| TGAAGGTCGTGGTTGGCGCG+AGG | + | chr5.3:72151309-72151328 | MS.gene70870:CDS | 65.0% | |
| ! | ATGTCGACGGCCGGTGATGG+TGG | + | chr5.3:72151508-72151527 | MS.gene70870:intron | 65.0% |
| GGCCTGGTCTCTCTCACCGG+TGG | + | chr5.3:72151416-72151435 | MS.gene70870:CDS | 70.0% | |
| !! | ACGGCCGGTGATGGTGGTGG+TGG | + | chr5.3:72151514-72151533 | MS.gene70870:intron | 70.0% |
| !! | GGTGGATTAGGACGGCGGGG+TGG | + | chr5.3:72151479-72151498 | MS.gene70870:intron | 70.0% |
| !! | TCGACGGCCGGTGATGGTGG+TGG | + | chr5.3:72151511-72151530 | MS.gene70870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72151308 | 72152927 | 72151308 | ID=MS.gene70870 |
| chr5.3 | mRNA | 72151308 | 72152927 | 72151308 | ID=MS.gene70870.t1;Parent=MS.gene70870 |
| chr5.3 | exon | 72151308 | 72151440 | 72151308 | ID=MS.gene70870.t1.exon1;Parent=MS.gene70870.t1 |
| chr5.3 | CDS | 72151308 | 72151440 | 72151308 | ID=cds.MS.gene70870.t1;Parent=MS.gene70870.t1 |
| chr5.3 | exon | 72151943 | 72152034 | 72151943 | ID=MS.gene70870.t1.exon2;Parent=MS.gene70870.t1 |
| chr5.3 | CDS | 72151943 | 72152034 | 72151943 | ID=cds.MS.gene70870.t1;Parent=MS.gene70870.t1 |
| chr5.3 | exon | 72152139 | 72152219 | 72152139 | ID=MS.gene70870.t1.exon3;Parent=MS.gene70870.t1 |
| chr5.3 | CDS | 72152139 | 72152219 | 72152139 | ID=cds.MS.gene70870.t1;Parent=MS.gene70870.t1 |
| chr5.3 | exon | 72152310 | 72152407 | 72152310 | ID=MS.gene70870.t1.exon4;Parent=MS.gene70870.t1 |
| chr5.3 | CDS | 72152310 | 72152407 | 72152310 | ID=cds.MS.gene70870.t1;Parent=MS.gene70870.t1 |
| chr5.3 | exon | 72152492 | 72152573 | 72152492 | ID=MS.gene70870.t1.exon5;Parent=MS.gene70870.t1 |
| chr5.3 | CDS | 72152492 | 72152573 | 72152492 | ID=cds.MS.gene70870.t1;Parent=MS.gene70870.t1 |
| chr5.3 | exon | 72152889 | 72152927 | 72152889 | ID=MS.gene70870.t1.exon6;Parent=MS.gene70870.t1 |
| chr5.3 | CDS | 72152889 | 72152927 | 72152889 | ID=cds.MS.gene70870.t1;Parent=MS.gene70870.t1 |
| Gene Sequence |
| Protein sequence |
