Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54399.t1 | XP_003621030.1 | 93.5 | 123 | 8 | 0 | 8 | 130 | 4 | 126 | 5.00E-57 | 230.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54399.t1 | Q6NMM1 | 53.6 | 112 | 52 | 0 | 14 | 125 | 11 | 122 | 7.1e-28 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54399.t1 | A2Q4X9 | 93.5 | 123 | 8 | 0 | 8 | 130 | 4 | 126 | 3.6e-57 | 230.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055512 | MS.gene54399 | 0.800644 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54399 | MS.gene70870 | PPI |
| MS.gene54399 | MS.gene47744 | PPI |
| MS.gene54399 | MS.gene016972 | PPI |
| MS.gene54399 | MS.gene038188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54399.t1 | MTR_7g006340 | 99.038 | 104 | 1 | 0 | 27 | 130 | 23 | 126 | 1.74e-67 | 199 |
| MS.gene54399.t1 | MTR_5g089500 | 51.695 | 118 | 57 | 0 | 8 | 125 | 5 | 122 | 1.91e-39 | 129 |
| MS.gene54399.t1 | MTR_0180s0070 | 54.867 | 113 | 51 | 0 | 13 | 125 | 5 | 117 | 1.39e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54399.t1 | AT1G05785 | 67.544 | 114 | 37 | 0 | 13 | 126 | 3 | 116 | 2.55e-50 | 156 |
| MS.gene54399.t1 | AT1G05785 | 63.025 | 119 | 44 | 0 | 8 | 126 | 4 | 122 | 5.75e-50 | 155 |
| MS.gene54399.t1 | AT1G05785 | 63.025 | 119 | 44 | 0 | 8 | 126 | 4 | 122 | 5.75e-50 | 155 |
| MS.gene54399.t1 | AT1G05785 | 63.025 | 119 | 44 | 0 | 8 | 126 | 4 | 122 | 5.75e-50 | 155 |
| MS.gene54399.t1 | AT1G05785 | 63.025 | 119 | 44 | 0 | 8 | 126 | 4 | 122 | 8.29e-50 | 157 |
| MS.gene54399.t1 | AT1G05785 | 63.025 | 119 | 44 | 0 | 8 | 126 | 4 | 122 | 8.29e-50 | 157 |
| MS.gene54399.t1 | AT1G05785 | 64.103 | 117 | 42 | 0 | 10 | 126 | 6 | 122 | 8.65e-50 | 155 |
| MS.gene54399.t1 | AT5G01430 | 52.586 | 116 | 55 | 0 | 10 | 125 | 7 | 122 | 4.25e-40 | 131 |
| MS.gene54399.t1 | AT5G01430 | 52.586 | 116 | 55 | 0 | 10 | 125 | 7 | 122 | 4.25e-40 | 131 |
| MS.gene54399.t1 | AT3G49420 | 52.586 | 116 | 55 | 0 | 10 | 125 | 7 | 122 | 4.25e-40 | 131 |
| MS.gene54399.t1 | AT3G49420 | 52.586 | 116 | 55 | 0 | 10 | 125 | 7 | 122 | 4.25e-40 | 131 |
| MS.gene54399.t1 | AT3G49420 | 52.586 | 116 | 55 | 0 | 10 | 125 | 7 | 122 | 4.25e-40 | 131 |
| MS.gene54399.t1 | AT3G03180 | 49.600 | 125 | 57 | 1 | 1 | 125 | 4 | 122 | 4.07e-36 | 121 |
| MS.gene54399.t1 | AT3G03180 | 49.600 | 125 | 57 | 1 | 1 | 125 | 4 | 122 | 1.60e-35 | 121 |
| MS.gene54399.t1 | AT3G03180 | 48.810 | 84 | 43 | 0 | 42 | 125 | 1 | 84 | 1.44e-21 | 82.8 |
Find 28 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATCTTCTTCACGTTTCT+TGG | 0.168278 | 7.4:+93130079 | MS.gene54399:CDS |
| GAGATTGGCATAGGGCTAAT+TGG | 0.295268 | 7.4:+93130052 | MS.gene54399:CDS |
| GGCATAGGGCTAATTGGTTT+TGG | 0.297009 | 7.4:+93130058 | MS.gene54399:CDS |
| TCAAGTATTATACCAACTAT+TGG | 0.335018 | 7.4:-93131845 | None:intergenic |
| CTCTACCATATCCCAGTTGT+TGG | 0.338776 | 7.4:+93132012 | MS.gene54399:CDS |
| GGTACTGCATCATTTCTTCT+AGG | 0.340109 | 7.4:+93131797 | MS.gene54399:CDS |
| CGTATAACCCATCCAACAAC+TGG | 0.347272 | 7.4:-93132024 | None:intergenic |
| GGTATAATACTTGAAATATA+CGG | 0.360101 | 7.4:+93131854 | MS.gene54399:CDS |
| CCCATCCAACAACTGGGATA+TGG | 0.361362 | 7.4:-93132017 | None:intergenic |
| CAGTTGTTGGATGGGTTATA+CGG | 0.363526 | 7.4:+93132025 | MS.gene54399:CDS |
| CACTAGTAGAGCAAACTATA+AGG | 0.384542 | 7.4:+93130299 | MS.gene54399:CDS |
| ACCATATCCCAGTTGTTGGA+TGG | 0.417356 | 7.4:+93132016 | MS.gene54399:CDS |
| AATCAGATACTTTGGTTGGC+AGG | 0.430906 | 7.4:+93130234 | MS.gene54399:intron |
| GCATCTGGAATCAGATACTT+TGG | 0.437779 | 7.4:+93130226 | MS.gene54399:intron |
| TTTGTGAGGTGGCCAATAGT+TGG | 0.500733 | 7.4:+93131833 | MS.gene54399:CDS |
| ATCAGATACTTTGGTTGGCA+GGG | 0.502636 | 7.4:+93130235 | MS.gene54399:intron |
| CTGGAATCAGATACTTTGGT+TGG | 0.506803 | 7.4:+93130230 | MS.gene54399:intron |
| CCATATCCCAGTTGTTGGAT+GGG | 0.513262 | 7.4:+93132017 | MS.gene54399:CDS |
| GACCGTGGTTTGCTTGCTCT+AGG | 0.538182 | 7.4:+93130118 | MS.gene54399:CDS |
| AAACATGCAGAGATTGGCAT+AGG | 0.550538 | 7.4:+93130043 | MS.gene54399:CDS |
| AGGAATCAACTAACCTGAAG+AGG | 0.556909 | 7.4:-93131886 | None:intergenic |
| TCAGATACTTTGGTTGGCAG+GGG | 0.564679 | 7.4:+93130236 | MS.gene54399:intron |
| CAACAACTGGGATATGGTAG+AGG | 0.565494 | 7.4:-93132011 | None:intergenic |
| AACATGCAGAGATTGGCATA+GGG | 0.629442 | 7.4:+93130044 | MS.gene54399:CDS |
| ACTAGTGAAGAGTGACCACA+TGG | 0.643753 | 7.4:-93130283 | None:intergenic |
| TGCTTGGTTGGCGTTCCATG+TGG | 0.666201 | 7.4:+93130268 | MS.gene54399:CDS |
| GTATAACCCATCCAACAACT+GGG | 0.675755 | 7.4:-93132023 | None:intergenic |
| TTCCTAGAGCAAGCAAACCA+CGG | 0.680667 | 7.4:-93130120 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTCTTTAGAATA+GGG | + | chr7.4:93130176-93130195 | MS.gene54399:intron | 10.0% |
| !!! | TATATATTTTTCTTTAGAAT+AGG | + | chr7.4:93130175-93130194 | MS.gene54399:intron | 10.0% |
| !! | GAAATAAAATGTTTCATTAA+TGG | - | chr7.4:93130349-93130368 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTAAATTGTTAC+CGG | - | chr7.4:93130499-93130518 | None:intergenic | 15.0% |
| !! | GAAATAAATATAGATAGCAT+AGG | + | chr7.4:93132178-93132197 | MS.gene54399:intron | 20.0% |
| !! | GGTATAATACTTGAAATATA+CGG | + | chr7.4:93131854-93131873 | MS.gene54399:CDS | 20.0% |
| !! | TTCCAAAATAAATGTAGATT+TGG | - | chr7.4:93131097-93131116 | None:intergenic | 20.0% |
| !! | TTGAATTAAATCATACCAAA+TGG | - | chr7.4:93132274-93132293 | None:intergenic | 20.0% |
| !!! | ACATTATTTACTTCTTTTGT+AGG | + | chr7.4:93131775-93131794 | MS.gene54399:intron | 20.0% |
| !!! | CATGTTTTTCAAAATTTTCA+AGG | - | chr7.4:93130030-93130049 | None:intergenic | 20.0% |
| !!! | CATTATTTACTTCTTTTGTA+GGG | + | chr7.4:93131776-93131795 | MS.gene54399:intron | 20.0% |
| !!! | TATTGAAAAGTGTTAGTTTA+TGG | - | chr7.4:93132245-93132264 | None:intergenic | 20.0% |
| !!! | TATTTTTCTTTAAGAGTACT+CGG | + | chr7.4:93131578-93131597 | MS.gene54399:intron | 20.0% |
| !!! | TTCAACTTTTAATGATTACT+TGG | + | chr7.4:93131329-93131348 | MS.gene54399:intron | 20.0% |
| !!! | TTCCAAATCTACATTTATTT+TGG | + | chr7.4:93131092-93131111 | MS.gene54399:intron | 20.0% |
| !!! | TTTTCAATATACTTTCCATT+TGG | + | chr7.4:93132256-93132275 | MS.gene54399:intron | 20.0% |
| ! | AAAACAATTCTTCAGTTCAT+TGG | - | chr7.4:93131526-93131545 | None:intergenic | 25.0% |
| ! | ATCAATAAATAACCTCTAAC+TGG | - | chr7.4:93131411-93131430 | None:intergenic | 25.0% |
| ! | ATGTCAAATACTCACATATA+GGG | - | chr7.4:93132580-93132599 | None:intergenic | 25.0% |
| ! | ATTTGTACAGTAAATTTACC+AGG | - | chr7.4:93131056-93131075 | None:intergenic | 25.0% |
| ! | GGTATGATTTAATTCAACTT+GGG | + | chr7.4:93132277-93132296 | MS.gene54399:intron | 25.0% |
| ! | TATCGTACAGATATCAAAAT+TGG | - | chr7.4:93131025-93131044 | None:intergenic | 25.0% |
| ! | TCAAACTAGATATTTATGAC+AGG | - | chr7.4:93131696-93131715 | None:intergenic | 25.0% |
| ! | TCAAGTATTATACCAACTAT+TGG | - | chr7.4:93131848-93131867 | None:intergenic | 25.0% |
| ! | TGGTATGATTTAATTCAACT+TGG | + | chr7.4:93132276-93132295 | MS.gene54399:intron | 25.0% |
| ! | TTTGTACAGTAAATTTACCA+GGG | - | chr7.4:93131055-93131074 | None:intergenic | 25.0% |
| !!! | GATTCATGTTGACTTAATTT+TGG | + | chr7.4:93130198-93130217 | MS.gene54399:intron | 25.0% |
| !!! | TGTTGACTTAATTTTGGTTT+TGG | + | chr7.4:93130204-93130223 | MS.gene54399:intron | 25.0% |
| ACACCCTTACTGAATAAAAA+AGG | - | chr7.4:93130762-93130781 | None:intergenic | 30.0% | |
| ACAGACATACATACAAAAAG+AGG | - | chr7.4:93132119-93132138 | None:intergenic | 30.0% | |
| ACCTCACAAAAATGAAAAAG+AGG | - | chr7.4:93131823-93131842 | None:intergenic | 30.0% | |
| ATATCACAAGAGATGCATTA+GGG | - | chr7.4:93130387-93130406 | None:intergenic | 30.0% | |
| ATCAGAAAATGACAAACCTA+AGG | - | chr7.4:93131246-93131265 | None:intergenic | 30.0% | |
| CACCCTTACTGAATAAAAAA+GGG | - | chr7.4:93130761-93130780 | None:intergenic | 30.0% | |
| CAGACATACATACAAAAAGA+GGG | - | chr7.4:93132118-93132137 | None:intergenic | 30.0% | |
| CATGTCAAATACTCACATAT+AGG | - | chr7.4:93132581-93132600 | None:intergenic | 30.0% | |
| CTTAATCTTAGTTAGCACAA+CGG | - | chr7.4:93130794-93130813 | None:intergenic | 30.0% | |
| TAGGGATATTGTGAGAATAT+AGG | - | chr7.4:93132562-93132581 | None:intergenic | 30.0% | |
| TCAGAAAATGACAAACCTAA+GGG | - | chr7.4:93131245-93131264 | None:intergenic | 30.0% | |
| TTAATCATGCTAATCACGTA+TGG | - | chr7.4:93132456-93132475 | None:intergenic | 30.0% | |
| TTGGTCAAACACAAATAGAA+AGG | - | chr7.4:93131006-93131025 | None:intergenic | 30.0% | |
| TTTGAAAAACATGCAGAGAT+TGG | + | chr7.4:93130037-93130056 | MS.gene54399:CDS | 30.0% | |
| TTTGTATATCACATCAGCAT+AGG | + | chr7.4:93130904-93130923 | MS.gene54399:intron | 30.0% | |
| ! | AAAAGTAGGAACTATTTTGC+TGG | - | chr7.4:93131381-93131400 | None:intergenic | 30.0% |
| ! | ATAATTCTTTTCTTTGACCG+TGG | + | chr7.4:93130103-93130122 | MS.gene54399:CDS | 30.0% |
| ! | GCACTTATCATTGATGTTTT+TGG | + | chr7.4:93131955-93131974 | MS.gene54399:intron | 30.0% |
| ! | GGATAATGAAGCATTCTATA+TGG | + | chr7.4:93131743-93131762 | MS.gene54399:intron | 30.0% |
| !! | ATTTTACTTGAAGTACTCCT+TGG | + | chr7.4:93131469-93131488 | MS.gene54399:intron | 30.0% |
| !! | TAAATGACATCGATTCCATA+GGG | + | chr7.4:93132219-93132238 | MS.gene54399:intron | 30.0% |
| !! | TCTTTTTCATTTTTGTGAGG+TGG | + | chr7.4:93131822-93131841 | MS.gene54399:CDS | 30.0% |
| !!! | AGCCCTTTTTTATTCAGTAA+GGG | + | chr7.4:93130756-93130775 | MS.gene54399:intron | 30.0% |
| !!! | TAGCCCTTTTTTATTCAGTA+AGG | + | chr7.4:93130755-93130774 | MS.gene54399:intron | 30.0% |
| !!! | TTAATTTTGGTTTTGGCATC+TGG | + | chr7.4:93130211-93130230 | MS.gene54399:intron | 30.0% |
| ATACATACAAAAAGAGGGAG+AGG | - | chr7.4:93132113-93132132 | None:intergenic | 35.0% | |
| ATATATTAACGCTACCTCCT+TGG | - | chr7.4:93131193-93131212 | None:intergenic | 35.0% | |
| ATATTTCCGACATATCCCTT+AGG | + | chr7.4:93131227-93131246 | MS.gene54399:intron | 35.0% | |
| ATTTCCTGTCTGTATCAGTA+AGG | + | chr7.4:93132323-93132342 | MS.gene54399:intron | 35.0% | |
| CACTAGTAGAGCAAACTATA+AGG | + | chr7.4:93130299-93130318 | MS.gene54399:CDS | 35.0% | |
| CATATCACAAGAGATGCATT+AGG | - | chr7.4:93130388-93130407 | None:intergenic | 35.0% | |
| CTAATGCATCTCTTGTGATA+TGG | + | chr7.4:93130386-93130405 | MS.gene54399:intron | 35.0% | |
| CTCTTTGCAAGTCATCATAT+AGG | - | chr7.4:93132425-93132444 | None:intergenic | 35.0% | |
| GATTACTTGGACAAAGAAAC+TGG | + | chr7.4:93131342-93131361 | MS.gene54399:intron | 35.0% | |
| GTGTGTGTTGCAAATATGAT+CGG | + | chr7.4:93132483-93132502 | MS.gene54399:intron | 35.0% | |
| TACACATGCATACATACAAG+TGG | - | chr7.4:93132152-93132171 | None:intergenic | 35.0% | |
| TACATACAAAAAGAGGGAGA+GGG | - | chr7.4:93132112-93132131 | None:intergenic | 35.0% | |
| TCAAATAAGCCTCTTGTAGT+GGG | + | chr7.4:93130712-93130731 | MS.gene54399:intron | 35.0% | |
| TCATATTTGCAACACACACA+TGG | - | chr7.4:93132482-93132501 | None:intergenic | 35.0% | |
| TGTACTTCTAGTCACACAAT+AGG | - | chr7.4:93130642-93130661 | None:intergenic | 35.0% | |
| ! | AGATGATAGTGTTGAAGCAA+TGG | + | chr7.4:93130935-93130954 | MS.gene54399:intron | 35.0% |
| ! | CTTCTAGATTGACTGTGTTT+TGG | + | chr7.4:93132515-93132534 | MS.gene54399:intron | 35.0% |
| ! | GATGATAGTGTTGAAGCAAT+GGG | + | chr7.4:93130936-93130955 | MS.gene54399:intron | 35.0% |
| !! | CTAAATGACATCGATTCCAT+AGG | + | chr7.4:93132218-93132237 | MS.gene54399:intron | 35.0% |
| !! | CTGCAGGAAACTTTTTAACT+AGG | - | chr7.4:93131169-93131188 | None:intergenic | 35.0% |
| !! | GCCTCTTTTTCATTTTTGTG+AGG | + | chr7.4:93131819-93131838 | MS.gene54399:CDS | 35.0% |
| !! | TGATATGGATTAGTGAATCC+TGG | + | chr7.4:93130401-93130420 | MS.gene54399:intron | 35.0% |
| !!! | ATTGATGTTTTTGGTTGCAG+TGG | + | chr7.4:93131964-93131983 | MS.gene54399:intron | 35.0% |
| !!! | GTAAACTTCTGTTTTTGCCA+AGG | - | chr7.4:93131489-93131508 | None:intergenic | 35.0% |
| !!! | TTTTTGGTTGCAGTGGTTTT+TGG | + | chr7.4:93131971-93131990 | MS.gene54399:intron | 35.0% |
| AAAAAGTTTCCTGCAGTCCA+AGG | + | chr7.4:93131173-93131192 | MS.gene54399:intron | 40.0% | |
| AAACATGCAGAGATTGGCAT+AGG | + | chr7.4:93130043-93130062 | MS.gene54399:CDS | 40.0% | |
| AACATGCAGAGATTGGCATA+GGG | + | chr7.4:93130044-93130063 | MS.gene54399:CDS | 40.0% | |
| AATAACCTCTAACTGGCAAG+TGG | - | chr7.4:93131404-93131423 | None:intergenic | 40.0% | |
| AATCAGATACTTTGGTTGGC+AGG | + | chr7.4:93130234-93130253 | MS.gene54399:intron | 40.0% | |
| ACAACTTTAATCCGAAGTGG+CGG | + | chr7.4:93130586-93130605 | MS.gene54399:intron | 40.0% | |
| AGGAATCAACTAACCTGAAG+AGG | - | chr7.4:93131889-93131908 | None:intergenic | 40.0% | |
| ATAAGCCTCTTGCAAATGCA+AGG | + | chr7.4:93130677-93130696 | MS.gene54399:intron | 40.0% | |
| ATCAGATACTTTGGTTGGCA+GGG | + | chr7.4:93130235-93130254 | MS.gene54399:intron | 40.0% | |
| CAAACCTTACTGATACAGAC+AGG | - | chr7.4:93132330-93132349 | None:intergenic | 40.0% | |
| CAAGAGGCTTATTTGACAAG+AGG | - | chr7.4:93130708-93130727 | None:intergenic | 40.0% | |
| CTGGAATCAGATACTTTGGT+TGG | + | chr7.4:93130230-93130249 | MS.gene54399:intron | 40.0% | |
| GACAAACCTAAGGGATATGT+CGG | - | chr7.4:93131236-93131255 | None:intergenic | 40.0% | |
| GACACAACTTTAATCCGAAG+TGG | + | chr7.4:93130583-93130602 | MS.gene54399:intron | 40.0% | |
| GAGAGTTCAAGAAGTCATCT+AGG | - | chr7.4:93131909-93131928 | None:intergenic | 40.0% | |
| GGTACTGCATCATTTCTTCT+AGG | + | chr7.4:93131797-93131816 | MS.gene54399:CDS | 40.0% | |
| GTATAACCCATCCAACAACT+GGG | - | chr7.4:93132026-93132045 | None:intergenic | 40.0% | |
| GTCAAATAAGCCTCTTGTAG+TGG | + | chr7.4:93130711-93130730 | MS.gene54399:intron | 40.0% | |
| TAACTGGCAAGTGGAAAAGT+AGG | - | chr7.4:93131395-93131414 | None:intergenic | 40.0% | |
| ! | AGTGTTAGTTTATGGCCCTA+TGG | - | chr7.4:93132237-93132256 | None:intergenic | 40.0% |
| ! | GCATCTGGAATCAGATACTT+TGG | + | chr7.4:93130226-93130245 | MS.gene54399:intron | 40.0% |
| !! | ATGGATTAGTGAATCCTGGT+AGG | + | chr7.4:93130405-93130424 | MS.gene54399:intron | 40.0% |
| !! | CAGTTGTTGGATGGGTTATA+CGG | + | chr7.4:93132025-93132044 | MS.gene54399:CDS | 40.0% |
| ACAATCTCTGCCCATATGAC+AGG | + | chr7.4:93132352-93132371 | MS.gene54399:intron | 45.0% | |
| ACCATATCCCAGTTGTTGGA+TGG | + | chr7.4:93132016-93132035 | MS.gene54399:CDS | 45.0% | |
| ACTAGTGAAGAGTGACCACA+TGG | - | chr7.4:93130286-93130305 | None:intergenic | 45.0% | |
| ATGACAGGTGGGACATCAAA+TGG | + | chr7.4:93132367-93132386 | MS.gene54399:intron | 45.0% | |
| CAACAACTGGGATATGGTAG+AGG | - | chr7.4:93132014-93132033 | None:intergenic | 45.0% | |
| CCAGTTTAGCAGATCTAGAG+AGG | - | chr7.4:93130875-93130894 | None:intergenic | 45.0% | |
| CCATATCCCAGTTGTTGGAT+GGG | + | chr7.4:93132017-93132036 | MS.gene54399:CDS | 45.0% | |
| CCTCTCTAGATCTGCTAAAC+TGG | + | chr7.4:93130872-93130891 | MS.gene54399:intron | 45.0% | |
| CCTCTTGCAAATGCAAGGTA+AGG | + | chr7.4:93130682-93130701 | MS.gene54399:intron | 45.0% | |
| CCTTACCTTGCATTTGCAAG+AGG | - | chr7.4:93130685-93130704 | None:intergenic | 45.0% | |
| CGTATAACCCATCCAACAAC+TGG | - | chr7.4:93132027-93132046 | None:intergenic | 45.0% | |
| CTCTACCATATCCCAGTTGT+TGG | + | chr7.4:93132012-93132031 | MS.gene54399:CDS | 45.0% | |
| GAGATTGGCATAGGGCTAAT+TGG | + | chr7.4:93130052-93130071 | MS.gene54399:CDS | 45.0% | |
| GGCATCTTCTTCACGTTTCT+TGG | + | chr7.4:93130079-93130098 | MS.gene54399:CDS | 45.0% | |
| TCAGATACTTTGGTTGGCAG+GGG | + | chr7.4:93130236-93130255 | MS.gene54399:intron | 45.0% | |
| TGACACTGACACATAGACTC+CGG | + | chr7.4:93130477-93130496 | MS.gene54399:intron | 45.0% | |
| TGATGTCCCACCTGTCATAT+GGG | - | chr7.4:93132365-93132384 | None:intergenic | 45.0% | |
| TTCCTAGAGCAAGCAAACCA+CGG | - | chr7.4:93130123-93130142 | None:intergenic | 45.0% | |
| TTGATGTCCCACCTGTCATA+TGG | - | chr7.4:93132366-93132385 | None:intergenic | 45.0% | |
| TTTGTGAGGTGGCCAATAGT+TGG | + | chr7.4:93131833-93131852 | MS.gene54399:CDS | 45.0% | |
| ! | ACGGTTGTGTTTTCCTCTTC+AGG | + | chr7.4:93131873-93131892 | MS.gene54399:CDS | 45.0% |
| ! | ATAAGCCTCTTGTAGTGGGA+TGG | + | chr7.4:93130716-93130735 | MS.gene54399:intron | 45.0% |
| ! | CTGATGACTCGTTGATTGAG+AGG | + | chr7.4:93131261-93131280 | MS.gene54399:intron | 45.0% |
| ! | CTGTACGATAGTTGATACCC+TGG | + | chr7.4:93131035-93131054 | MS.gene54399:intron | 45.0% |
| ! | CTTTTCCACTTGCCAGTTAG+AGG | + | chr7.4:93131396-93131415 | MS.gene54399:intron | 45.0% |
| ! | GGGTAGCAATTTTGCTTGGT+TGG | + | chr7.4:93130256-93130275 | MS.gene54399:CDS | 45.0% |
| ! | TAAGCCTCTTGTAGTGGGAT+GGG | + | chr7.4:93130717-93130736 | MS.gene54399:intron | 45.0% |
| !! | GGCATAGGGCTAATTGGTTT+TGG | + | chr7.4:93130058-93130077 | MS.gene54399:CDS | 45.0% |
| !! | TTTAAGAGTACTCGGCTGCA+TGG | + | chr7.4:93131586-93131605 | MS.gene54399:intron | 45.0% |
| !!! | TTTTTAAAATTATTTATGAA+TGG | + | chr7.4:93131722-93131741 | MS.gene54399:intron | 5.0% |
| AAGTTTCCTGCAGTCCAAGG+AGG | + | chr7.4:93131176-93131195 | MS.gene54399:intron | 50.0% | |
| ACTATGTAGCACCGCCACTT+CGG | - | chr7.4:93130600-93130619 | None:intergenic | 50.0% | |
| AGATCCCATCCCACTACAAG+AGG | - | chr7.4:93130724-93130743 | None:intergenic | 50.0% | |
| AGGAGCTGCAAAAGAGCAGA+AGG | - | chr7.4:93132654-93132673 | None:intergenic | 50.0% | |
| ATCTCTGCCCATATGACAGG+TGG | + | chr7.4:93132355-93132374 | MS.gene54399:intron | 50.0% | |
| ATGTCTGACGACATCCTACC+AGG | - | chr7.4:93130422-93130441 | None:intergenic | 50.0% | |
| CCCATCCAACAACTGGGATA+TGG | - | chr7.4:93132020-93132039 | None:intergenic | 50.0% | |
| GGAGCTGCAAAAGAGCAGAA+GGG | - | chr7.4:93132653-93132672 | None:intergenic | 50.0% | |
| TACAAAAAGAGGGAGAGGGC+AGG | - | chr7.4:93132108-93132127 | None:intergenic | 50.0% | |
| TCTCTGCCCATATGACAGGT+GGG | + | chr7.4:93132356-93132375 | MS.gene54399:intron | 50.0% | |
| ! | GCAGGGGTAGCAATTTTGCT+TGG | + | chr7.4:93130252-93130271 | MS.gene54399:CDS | 50.0% |
| AAAAAGAGGGAGAGGGCAGG+AGG | - | chr7.4:93132105-93132124 | None:intergenic | 55.0% | |
| AAAAGAGGGAGAGGGCAGGA+GGG | - | chr7.4:93132104-93132123 | None:intergenic | 55.0% | |
| AACACCAGTGTCGTGTGCAG+TGG | + | chr7.4:93131118-93131137 | MS.gene54399:intron | 55.0% | |
| ACACCAGTGTCGTGTGCAGT+GGG | + | chr7.4:93131119-93131138 | MS.gene54399:intron | 55.0% | |
| GTTGTGTCCAGTGTCCGACA+CGG | - | chr7.4:93130571-93130590 | None:intergenic | 55.0% | |
| TGCTTGGTTGGCGTTCCATG+TGG | + | chr7.4:93130268-93130287 | MS.gene54399:CDS | 55.0% | |
| TTTCCCACTGCACACGACAC+TGG | - | chr7.4:93131125-93131144 | None:intergenic | 55.0% | |
| !! | CACGTGTCGGTGTTAGACAC+TGG | - | chr7.4:93130547-93130566 | None:intergenic | 55.0% |
| !! | GACCGTGGTTTGCTTGCTCT+AGG | + | chr7.4:93130118-93130137 | MS.gene54399:CDS | 55.0% |
| AAAGAGGGAGAGGGCAGGAG+GGG | - | chr7.4:93132103-93132122 | None:intergenic | 60.0% | |
| ACACCGACACGTGTCCGTGT+CGG | + | chr7.4:93130554-93130573 | MS.gene54399:intron | 60.0% | |
| ACGCTACCTCCTTGGACTGC+AGG | - | chr7.4:93131185-93131204 | None:intergenic | 60.0% | |
| TGTCCGACACGGACACGTGT+CGG | - | chr7.4:93130560-93130579 | None:intergenic | 60.0% | |
| AAGAGGGAGAGGGCAGGAGG+GGG | - | chr7.4:93132102-93132121 | None:intergenic | 65.0% | |
| CACGTGTCCGTGTCGGACAC+TGG | + | chr7.4:93130561-93130580 | MS.gene54399:intron | 65.0% | |
| AGAGGGCAGGAGGGGGAAGG+CGG | - | chr7.4:93132095-93132114 | None:intergenic | 70.0% | |
| GGGAGAGGGCAGGAGGGGGA+AGG | - | chr7.4:93132098-93132117 | None:intergenic | 75.0% | |
| ! | GGGCAGGAGGGGGAAGGCGG+AGG | - | chr7.4:93132092-93132111 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93130013 | 93132676 | 93130013 | ID=MS.gene54399 |
| chr7.4 | mRNA | 93130013 | 93132676 | 93130013 | ID=MS.gene54399.t1;Parent=MS.gene54399 |
| chr7.4 | exon | 93130013 | 93130144 | 93130013 | ID=MS.gene54399.t1.exon1;Parent=MS.gene54399.t1 |
| chr7.4 | CDS | 93130013 | 93130144 | 93130013 | ID=cds.MS.gene54399.t1;Parent=MS.gene54399.t1 |
| chr7.4 | exon | 93130240 | 93130320 | 93130240 | ID=MS.gene54399.t1.exon2;Parent=MS.gene54399.t1 |
| chr7.4 | CDS | 93130240 | 93130320 | 93130240 | ID=cds.MS.gene54399.t1;Parent=MS.gene54399.t1 |
| chr7.4 | exon | 93131797 | 93131894 | 93131797 | ID=MS.gene54399.t1.exon3;Parent=MS.gene54399.t1 |
| chr7.4 | CDS | 93131797 | 93131894 | 93131797 | ID=cds.MS.gene54399.t1;Parent=MS.gene54399.t1 |
| chr7.4 | exon | 93131984 | 93132057 | 93131984 | ID=MS.gene54399.t1.exon4;Parent=MS.gene54399.t1 |
| chr7.4 | CDS | 93131984 | 93132057 | 93131984 | ID=cds.MS.gene54399.t1;Parent=MS.gene54399.t1 |
| chr7.4 | exon | 93132669 | 93132676 | 93132669 | ID=MS.gene54399.t1.exon5;Parent=MS.gene54399.t1 |
| chr7.4 | CDS | 93132669 | 93132676 | 93132669 | ID=cds.MS.gene54399.t1;Parent=MS.gene54399.t1 |
| Gene Sequence |
| Protein sequence |
