Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038188.t1 | XP_003617250.1 | 99.3 | 135 | 1 | 0 | 1 | 135 | 6 | 140 | 6.50E-68 | 266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038188.t1 | Q6NMM1 | 73.3 | 135 | 36 | 0 | 1 | 135 | 6 | 140 | 7.6e-57 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038188.t1 | B7FGH0 | 99.3 | 135 | 1 | 0 | 1 | 135 | 6 | 140 | 4.7e-68 | 266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038188 | MS.gene016972 | PPI |
| MS.gene038188 | MS.gene70870 | PPI |
| MS.gene038188 | MS.gene47744 | PPI |
| MS.gene54399 | MS.gene038188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038188.t1 | MTR_5g089500 | 99.259 | 135 | 1 | 0 | 1 | 135 | 6 | 140 | 4.72e-90 | 257 |
| MS.gene038188.t1 | MTR_0180s0070 | 90.000 | 130 | 13 | 0 | 6 | 135 | 6 | 135 | 2.71e-80 | 233 |
| MS.gene038188.t1 | MTR_7g006340 | 53.846 | 117 | 54 | 0 | 1 | 117 | 5 | 121 | 9.82e-32 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038188.t1 | AT5G01430 | 85.926 | 135 | 19 | 0 | 1 | 135 | 6 | 140 | 3.20e-81 | 235 |
| MS.gene038188.t1 | AT5G01430 | 85.926 | 135 | 19 | 0 | 1 | 135 | 6 | 140 | 3.20e-81 | 235 |
| MS.gene038188.t1 | AT3G49420 | 85.926 | 135 | 19 | 0 | 1 | 135 | 6 | 140 | 3.20e-81 | 235 |
| MS.gene038188.t1 | AT3G49420 | 85.926 | 135 | 19 | 0 | 1 | 135 | 6 | 140 | 3.20e-81 | 235 |
| MS.gene038188.t1 | AT3G49420 | 85.926 | 135 | 19 | 0 | 1 | 135 | 6 | 140 | 3.20e-81 | 235 |
| MS.gene038188.t1 | AT3G03180 | 73.333 | 135 | 36 | 0 | 1 | 135 | 6 | 140 | 1.72e-72 | 213 |
| MS.gene038188.t1 | AT3G03180 | 73.171 | 123 | 33 | 0 | 1 | 123 | 6 | 128 | 1.26e-64 | 195 |
| MS.gene038188.t1 | AT3G03180 | 71.569 | 102 | 29 | 0 | 34 | 135 | 1 | 102 | 1.26e-52 | 161 |
| MS.gene038188.t1 | AT1G05785 | 48.780 | 123 | 63 | 0 | 1 | 123 | 5 | 127 | 1.48e-38 | 128 |
| MS.gene038188.t1 | AT1G05785 | 48.780 | 123 | 63 | 0 | 1 | 123 | 5 | 127 | 1.48e-38 | 128 |
| MS.gene038188.t1 | AT1G05785 | 48.760 | 121 | 62 | 0 | 1 | 121 | 5 | 125 | 1.55e-38 | 127 |
| MS.gene038188.t1 | AT1G05785 | 48.760 | 121 | 62 | 0 | 1 | 121 | 5 | 125 | 1.55e-38 | 127 |
| MS.gene038188.t1 | AT1G05785 | 48.760 | 121 | 62 | 0 | 1 | 121 | 5 | 125 | 1.55e-38 | 127 |
| MS.gene038188.t1 | AT1G05785 | 48.361 | 122 | 63 | 0 | 1 | 122 | 5 | 126 | 2.55e-38 | 126 |
| MS.gene038188.t1 | AT1G05785 | 48.718 | 117 | 60 | 0 | 5 | 121 | 3 | 119 | 3.47e-36 | 121 |
Find 33 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGTTCTTGATTCTCATTT+TGG | 0.178412 | 5.4:+70435707 | MS.gene038188:CDS |
| CTACAGAAGATTCCTGTTCT+TGG | 0.248496 | 5.4:+70435900 | MS.gene038188:CDS |
| TCAATAATCATGCCCAAAAT+AGG | 0.262568 | 5.4:-70435735 | None:intergenic |
| ATGGGTTCATCGTACTATTC+AGG | 0.273677 | 5.4:+70435763 | MS.gene038188:CDS |
| TGATATTGTGCAGTGGATTC+TGG | 0.291832 | 5.4:+70435859 | MS.gene038188:intron |
| GAGATTGGATTAGGATTAAC+TGG | 0.303542 | 5.4:+70435319 | MS.gene038188:intron |
| GGACGATCTCATTTGGTATT+GGG | 0.336695 | 5.4:+70435688 | MS.gene038188:CDS |
| GGGACGATCTCATTTGGTAT+TGG | 0.364200 | 5.4:+70435687 | MS.gene038188:CDS |
| GGCATGATTATTGAGGCATA+TGG | 0.393028 | 5.4:+70435744 | MS.gene038188:CDS |
| GGATTAGGATTAACTGGCTT+CGG | 0.400449 | 5.4:+70435325 | MS.gene038188:CDS |
| TGCAATGCAGAGATTGGATT+AGG | 0.405736 | 5.4:+70435310 | MS.gene038188:intron |
| TACTAGGGGACGATCTCATT+TGG | 0.410587 | 5.4:+70435681 | MS.gene038188:intron |
| GAAGATTCCTGTTCTTGGTT+GGG | 0.416637 | 5.4:+70435905 | MS.gene038188:CDS |
| AGAAGATTCCTGTTCTTGGT+TGG | 0.424267 | 5.4:+70435904 | MS.gene038188:CDS |
| CAGTTCTTTGACCGCTATAG+AGG | 0.428923 | 5.4:+70436266 | MS.gene038188:intron |
| AATAAGATCCTGTTTGTGTC+TGG | 0.430436 | 5.4:+70435510 | MS.gene038188:intron |
| AGGATACTCCAGACACAAAC+AGG | 0.436925 | 5.4:-70435518 | None:intergenic |
| GGACTTCAGTCCAATGGTTA+AGG | 0.441990 | 5.4:-70435538 | None:intergenic |
| GCATGATTATTGAGGCATAT+GGG | 0.478094 | 5.4:+70435745 | MS.gene038188:CDS |
| ATTGTCTTCTTCTTCGACAA+GGG | 0.497551 | 5.4:+70435370 | MS.gene038188:CDS |
| TGAATGACCCAACCAAGAAC+AGG | 0.507636 | 5.4:-70435912 | None:intergenic |
| CGACAAGGGATTGCTAGCCA+TGG | 0.519419 | 5.4:+70435384 | MS.gene038188:CDS |
| ATACATACCGATCGGATGAA+TGG | 0.521034 | 5.4:-70435939 | None:intergenic |
| CAGTGGATTCTGGCCTACAC+TGG | 0.536464 | 5.4:+70435869 | MS.gene038188:intron |
| CATAGTGGACTTCAGTCCAA+TGG | 0.554726 | 5.4:-70435544 | None:intergenic |
| TCTGGAGTATCCTTAACCAT+TGG | 0.562272 | 5.4:+70435528 | MS.gene038188:CDS |
| GACAAGGGATTGCTAGCCAT+GGG | 0.582815 | 5.4:+70435385 | MS.gene038188:CDS |
| GATTGTCTTCTTCTTCGACA+AGG | 0.595545 | 5.4:+70435369 | MS.gene038188:CDS |
| CAAGAAACATACATTTCCCA+TGG | 0.607237 | 5.4:-70435401 | None:intergenic |
| CAAAGATCTCAGTGTTACAC+AGG | 0.608390 | 5.4:-70436299 | None:intergenic |
| TCAACAGCCATTCATCCGAT+CGG | 0.621934 | 5.4:+70435932 | MS.gene038188:CDS |
| CGAAGAAGAAGACAATCCCA+AGG | 0.650628 | 5.4:-70435363 | None:intergenic |
| GCACTCGTTTACCTCTATAG+CGG | 0.745219 | 5.4:-70436277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTTAATATATGTGAT+TGG | + | chr5.4:70435285-70435304 | MS.gene038188:intron | 10.0% |
| !!! | ATTTTTGTAAATTACATACT+TGG | + | chr5.4:70435212-70435231 | MS.gene038188:intron | 15.0% |
| !! | AGAATAAGATCACTAATTTA+TGG | - | chr5.4:70433312-70433331 | None:intergenic | 20.0% |
| !! | AGTATAAACATTCTACAAAA+TGG | - | chr5.4:70433518-70433537 | None:intergenic | 20.0% |
| !! | ATACTTTGTAAAGTCATTAT+TGG | + | chr5.4:70433533-70433552 | MS.gene038188:intron | 20.0% |
| !! | GAACATTTGATTATTTGATA+TGG | - | chr5.4:70436045-70436064 | None:intergenic | 20.0% |
| !! | GTAATTTCCAATAAAATCTA+GGG | - | chr5.4:70435009-70435028 | None:intergenic | 20.0% |
| !! | TAATTTCCAATAAAATCTAG+GGG | - | chr5.4:70435008-70435027 | None:intergenic | 20.0% |
| !!! | ATACCTTTTACTTTTTTACT+AGG | + | chr5.4:70435665-70435684 | MS.gene038188:intron | 20.0% |
| !!! | TAAAAAAGTAAAAGGTATGT+GGG | - | chr5.4:70435663-70435682 | None:intergenic | 20.0% |
| !!! | TACCTTTTACTTTTTTACTA+GGG | + | chr5.4:70435666-70435685 | MS.gene038188:intron | 20.0% |
| !!! | TTATCATTTTTGTAGTCAAA+AGG | + | chr5.4:70433996-70434015 | MS.gene038188:intron | 20.0% |
| !!! | TTTTATTCCACTTACTTTTT+CGG | - | chr5.4:70433182-70433201 | None:intergenic | 20.0% |
| ! | AATACCGTATAAATATACAG+TGG | - | chr5.4:70434416-70434435 | None:intergenic | 25.0% |
| ! | ATGCTAGTATAAGCTAATAA+TGG | + | chr5.4:70435835-70435854 | MS.gene038188:intron | 25.0% |
| ! | ATGTGCATATTAAATAACCA+AGG | - | chr5.4:70433576-70433595 | None:intergenic | 25.0% |
| ! | ATTTAGTCAAAACAAAGCTT+CGG | - | chr5.4:70435181-70435200 | None:intergenic | 25.0% |
| ! | ATTTCCATTATAGCTTCATT+AGG | - | chr5.4:70434232-70434251 | None:intergenic | 25.0% |
| ! | CGTAATTTCCAATAAAATCT+AGG | - | chr5.4:70435010-70435029 | None:intergenic | 25.0% |
| ! | GTGTGTTTATATATCATTTC+TGG | + | chr5.4:70435065-70435084 | MS.gene038188:intron | 25.0% |
| ! | TACTATATCACGTTACAAAT+AGG | - | chr5.4:70435103-70435122 | None:intergenic | 25.0% |
| ! | TATTTCTTGGGATTTCTTAA+TGG | + | chr5.4:70433438-70433457 | MS.gene038188:intron | 25.0% |
| ! | TCTATAGTAGTAAATGTGTA+AGG | - | chr5.4:70436017-70436036 | None:intergenic | 25.0% |
| ! | TGAAAATATGTTGACAAAGT+GGG | - | chr5.4:70435251-70435270 | None:intergenic | 25.0% |
| ! | TTATTTAATATGCACATACC+TGG | + | chr5.4:70433579-70433598 | MS.gene038188:intron | 25.0% |
| ! | TTGAAAATATGTTGACAAAG+TGG | - | chr5.4:70435252-70435271 | None:intergenic | 25.0% |
| ! | TTGCATAATAAGCATCTAAT+TGG | - | chr5.4:70434258-70434277 | None:intergenic | 25.0% |
| ! | TTTAAATCAACGACAACTAA+AGG | - | chr5.4:70434189-70434208 | None:intergenic | 25.0% |
| ! | TTTACTGTTTAGAGATGAAA+GGG | + | chr5.4:70434925-70434944 | MS.gene038188:intron | 25.0% |
| !! | AAAAAAGTAAAAGGTATGTG+GGG | - | chr5.4:70435662-70435681 | None:intergenic | 25.0% |
| !! | ATTATACCCCTAGATTTTAT+TGG | + | chr5.4:70434999-70435018 | MS.gene038188:intron | 25.0% |
| !! | GTAAAAAAGTAAAAGGTATG+TGG | - | chr5.4:70435664-70435683 | None:intergenic | 25.0% |
| !! | GTATATTTTTCTCTTTCCTT+GGG | + | chr5.4:70435347-70435366 | MS.gene038188:CDS | 25.0% |
| !!! | ACCTTTTACTTTTTTACTAG+GGG | + | chr5.4:70435667-70435686 | MS.gene038188:intron | 25.0% |
| !!! | ATAGAAGTACTATGAAATAG+AGG | + | chr5.4:70433885-70433904 | MS.gene038188:intron | 25.0% |
| !!! | TCATCATGTTGATTTTCTTT+AGG | + | chr5.4:70434300-70434319 | MS.gene038188:intron | 25.0% |
| AAATGTGAAGAAAGAAAGGA+AGG | + | chr5.4:70433680-70433699 | MS.gene038188:intron | 30.0% | |
| AACAAACAGTGAACTGATAA+CGG | - | chr5.4:70435606-70435625 | None:intergenic | 30.0% | |
| AACTTTCACAATACTGAAGA+TGG | + | chr5.4:70436152-70436171 | MS.gene038188:intron | 30.0% | |
| AGGCTCAGTTTATAAATTTC+AGG | - | chr5.4:70436226-70436245 | None:intergenic | 30.0% | |
| ATCACCTAATGAAGCTATAA+TGG | + | chr5.4:70434225-70434244 | MS.gene038188:intron | 30.0% | |
| ATGATGAAACCATAGCATAA+AGG | - | chr5.4:70435149-70435168 | None:intergenic | 30.0% | |
| ATTATAGCTTCATTAGGTGA+TGG | - | chr5.4:70434226-70434245 | None:intergenic | 30.0% | |
| CTGAAGATGGAAAAAGATTT+AGG | + | chr5.4:70436165-70436184 | MS.gene038188:intron | 30.0% | |
| CTTCATGAAAAATTGCATAG+TGG | - | chr5.4:70435562-70435581 | None:intergenic | 30.0% | |
| GACACCACTGTATATTTATA+CGG | + | chr5.4:70434409-70434428 | MS.gene038188:intron | 30.0% | |
| GTTTACTGTTTAGAGATGAA+AGG | + | chr5.4:70434924-70434943 | MS.gene038188:intron | 30.0% | |
| TATTGCAAATACATACCGAT+CGG | - | chr5.4:70435950-70435969 | None:intergenic | 30.0% | |
| TCAATAATCATGCCCAAAAT+AGG | - | chr5.4:70435738-70435757 | None:intergenic | 30.0% | |
| TCACTGTTAAGTTATAAGAG+TGG | - | chr5.4:70433976-70433995 | None:intergenic | 30.0% | |
| TCATCTCTAAACAGTAAACA+CGG | - | chr5.4:70434923-70434942 | None:intergenic | 30.0% | |
| TCCCCTAGTAAAAAAGTAAA+AGG | - | chr5.4:70435671-70435690 | None:intergenic | 30.0% | |
| TGAGTAACATAATGATACCA+GGG | - | chr5.4:70435490-70435509 | None:intergenic | 30.0% | |
| TGTATAATGTCAGATCTGAA+AGG | + | chr5.4:70434727-70434746 | MS.gene038188:intron | 30.0% | |
| TTGAGTAACATAATGATACC+AGG | - | chr5.4:70435491-70435510 | None:intergenic | 30.0% | |
| TTTAGTCAAAACAAAGCTTC+GGG | - | chr5.4:70435180-70435199 | None:intergenic | 30.0% | |
| ! | AAAAAGTAAAAGGTATGTGG+GGG | - | chr5.4:70435661-70435680 | None:intergenic | 30.0% |
| ! | ACTTTTGCAGAGGATAAATT+GGG | - | chr5.4:70434591-70434610 | None:intergenic | 30.0% |
| ! | ATCAGCCTTTTGTAAAAACA+AGG | - | chr5.4:70433774-70433793 | None:intergenic | 30.0% |
| ! | ATTTTACTGCCTTTATGCTA+TGG | + | chr5.4:70435137-70435156 | MS.gene038188:intron | 30.0% |
| ! | CCTTTTGTAAAAACAAGGTA+AGG | - | chr5.4:70433769-70433788 | None:intergenic | 30.0% |
| ! | CTATGCAATTTTTCATGAAG+CGG | + | chr5.4:70435562-70435581 | MS.gene038188:CDS | 30.0% |
| ! | GGTATATTTTTCTCTTTCCT+TGG | + | chr5.4:70435346-70435365 | MS.gene038188:CDS | 30.0% |
| !! | ATGCAGTTATTTTGTGCAAT+AGG | + | chr5.4:70433334-70433353 | MS.gene038188:intron | 30.0% |
| !! | GTTGATTTTCTTTAGGTTCT+TGG | + | chr5.4:70434307-70434326 | MS.gene038188:intron | 30.0% |
| !! | TATTTTGGGCATGATTATTG+AGG | + | chr5.4:70435737-70435756 | MS.gene038188:CDS | 30.0% |
| !!! | CCTTACCTTGTTTTTACAAA+AGG | + | chr5.4:70433766-70433785 | MS.gene038188:intron | 30.0% |
| !!! | GGTTTCAGATATGTTTTTTG+CGG | - | chr5.4:70434616-70434635 | None:intergenic | 30.0% |
| !!! | TAACATCTATTTTAATGCCC+TGG | + | chr5.4:70435470-70435489 | MS.gene038188:intron | 30.0% |
| AAATCCCAAGAAATACGCAA+AGG | - | chr5.4:70433433-70433452 | None:intergenic | 35.0% | |
| AATAAGATCCTGTTTGTGTC+TGG | + | chr5.4:70435510-70435529 | MS.gene038188:intron | 35.0% | |
| AGAATCGATCAGAATCACTA+CGG | - | chr5.4:70436075-70436094 | None:intergenic | 35.0% | |
| AGCATAAACCTATAACGTCT+GGG | + | chr5.4:70433799-70433818 | MS.gene038188:intron | 35.0% | |
| ATGCTATGGTTTCATCATAC+TGG | + | chr5.4:70435151-70435170 | MS.gene038188:intron | 35.0% | |
| ATTGTCTTCTTCTTCGACAA+GGG | + | chr5.4:70435370-70435389 | MS.gene038188:CDS | 35.0% | |
| CAAGAAACATACATTTCCCA+TGG | - | chr5.4:70435404-70435423 | None:intergenic | 35.0% | |
| CAAGTGGACAGAAAATTTGA+AGG | - | chr5.4:70436246-70436265 | None:intergenic | 35.0% | |
| CAGTATTGTGAAAGTTTAGC+AGG | - | chr5.4:70436148-70436167 | None:intergenic | 35.0% | |
| CGCAAAATGTGAAGAAAGAA+AGG | + | chr5.4:70433676-70433695 | MS.gene038188:intron | 35.0% | |
| CTCACTGCATGATCTATAAT+AGG | + | chr5.4:70433740-70433759 | MS.gene038188:intron | 35.0% | |
| GCATGATTATTGAGGCATAT+GGG | + | chr5.4:70435745-70435764 | MS.gene038188:CDS | 35.0% | |
| TTACTTGTGTGTGTAGAAGA+AGG | + | chr5.4:70433261-70433280 | MS.gene038188:intron | 35.0% | |
| TTAGTCAAAACAAAGCTTCG+GGG | - | chr5.4:70435179-70435198 | None:intergenic | 35.0% | |
| ! | ATCGTACTATTCAGGTTTAG+TGG | + | chr5.4:70435771-70435790 | MS.gene038188:intron | 35.0% |
| ! | CACTTTTGCAGAGGATAAAT+TGG | - | chr5.4:70434592-70434611 | None:intergenic | 35.0% |
| ! | CATGAAGCGGAGTAATTTTA+AGG | + | chr5.4:70435575-70435594 | MS.gene038188:CDS | 35.0% |
| ! | GAGATTGGATTAGGATTAAC+TGG | + | chr5.4:70435319-70435338 | MS.gene038188:intron | 35.0% |
| ! | GGGTTCTTGATTCTCATTTT+GGG | + | chr5.4:70435708-70435727 | MS.gene038188:CDS | 35.0% |
| ! | TAATGGATGATATTGTGCAG+TGG | + | chr5.4:70435852-70435871 | MS.gene038188:intron | 35.0% |
| ! | TGGGTTCTTGATTCTCATTT+TGG | + | chr5.4:70435707-70435726 | MS.gene038188:CDS | 35.0% |
| !! | CATCTGTTTTCTATTAGCCT+TGG | + | chr5.4:70433556-70433575 | MS.gene038188:intron | 35.0% |
| !! | TCTTGATTCTCATTTTGGGA+TGG | + | chr5.4:70435712-70435731 | MS.gene038188:CDS | 35.0% |
| !!! | ATTTTGGGATGGCCTATTTT+GGG | + | chr5.4:70435723-70435742 | MS.gene038188:CDS | 35.0% |
| AAGACACAAATACGACACCA+GGG | - | chr5.4:70435040-70435059 | None:intergenic | 40.0% | |
| AAGAGACAAAAGGGATAGGA+CGG | + | chr5.4:70433707-70433726 | MS.gene038188:intron | 40.0% | |
| AAGGAAGAGACAAAAGGGAT+AGG | + | chr5.4:70433703-70433722 | MS.gene038188:intron | 40.0% | |
| AATACGCAAAGGTAGGGAAA+AGG | - | chr5.4:70433422-70433441 | None:intergenic | 40.0% | |
| ACCATAGCAAAACAATGCAG+CGG | + | chr5.4:70434633-70434652 | MS.gene038188:intron | 40.0% | |
| AGAAGATTCCTGTTCTTGGT+TGG | + | chr5.4:70435904-70435923 | MS.gene038188:CDS | 40.0% | |
| ATACATACCGATCGGATGAA+TGG | - | chr5.4:70435942-70435961 | None:intergenic | 40.0% | |
| ATCTCTTGCCAATACACTCA+AGG | - | chr5.4:70433653-70433672 | None:intergenic | 40.0% | |
| ATCTGATTCTTGTAGCAGGT+TGG | + | chr5.4:70434148-70434167 | MS.gene038188:intron | 40.0% | |
| ATGGGTTCATCGTACTATTC+AGG | + | chr5.4:70435763-70435782 | MS.gene038188:CDS | 40.0% | |
| CACACAATGTTGCATAACGA+AGG | - | chr5.4:70433623-70433642 | None:intergenic | 40.0% | |
| CAGCATAAACCTATAACGTC+TGG | + | chr5.4:70433798-70433817 | MS.gene038188:intron | 40.0% | |
| CATTCTACAAAATGGAGCAC+TGG | - | chr5.4:70433510-70433529 | None:intergenic | 40.0% | |
| CCAAGAAATACGCAAAGGTA+GGG | - | chr5.4:70433428-70433447 | None:intergenic | 40.0% | |
| CCTACCTTTGCGTATTTCTT+GGG | + | chr5.4:70433426-70433445 | MS.gene038188:intron | 40.0% | |
| CTACAGAAGATTCCTGTTCT+TGG | + | chr5.4:70435900-70435919 | MS.gene038188:CDS | 40.0% | |
| GAAGATTCCTGTTCTTGGTT+GGG | + | chr5.4:70435905-70435924 | MS.gene038188:CDS | 40.0% | |
| GAAGGAAGGAAGAGACAAAA+GGG | + | chr5.4:70433698-70433717 | MS.gene038188:intron | 40.0% | |
| GACGTTATAGGTTTATGCTG+TGG | - | chr5.4:70433798-70433817 | None:intergenic | 40.0% | |
| GATGAAAGGGAGAAAGAAAG+AGG | + | chr5.4:70434938-70434957 | MS.gene038188:intron | 40.0% | |
| GATTGTCTTCTTCTTCGACA+AGG | + | chr5.4:70435369-70435388 | MS.gene038188:CDS | 40.0% | |
| GGACGATCTCATTTGGTATT+GGG | + | chr5.4:70435688-70435707 | MS.gene038188:CDS | 40.0% | |
| GGATAAATTGGGAAGGAGAA+CGG | - | chr5.4:70434580-70434599 | None:intergenic | 40.0% | |
| GGCATGATTATTGAGGCATA+TGG | + | chr5.4:70435744-70435763 | MS.gene038188:CDS | 40.0% | |
| GTGAAGAAAGAAAGGAAGGA+AGG | + | chr5.4:70433684-70433703 | MS.gene038188:intron | 40.0% | |
| TAAGACACAAATACGACACC+AGG | - | chr5.4:70435041-70435060 | None:intergenic | 40.0% | |
| TAGTCAAAACAAAGCTTCGG+GGG | - | chr5.4:70435178-70435197 | None:intergenic | 40.0% | |
| TATGTGGGGGTTATTTACCA+TGG | - | chr5.4:70435648-70435667 | None:intergenic | 40.0% | |
| TCAGAATCACTACGGATTTC+AGG | - | chr5.4:70436067-70436086 | None:intergenic | 40.0% | |
| TGAACGACCGAAAAAGTAAG+TGG | + | chr5.4:70433172-70433191 | MS.gene038188:intron | 40.0% | |
| TGAGAGACGATACAGTAACA+GGG | - | chr5.4:70434461-70434480 | None:intergenic | 40.0% | |
| TGCAATGCAGAGATTGGATT+AGG | + | chr5.4:70435310-70435329 | MS.gene038188:intron | 40.0% | |
| TGGTGTCTACTCCAAACTTT+GGG | + | chr5.4:70433827-70433846 | MS.gene038188:intron | 40.0% | |
| TGTAGAAAAACAGCCAGTGT+AGG | - | chr5.4:70435885-70435904 | None:intergenic | 40.0% | |
| TGTCATCTGATTCTTGTAGC+AGG | + | chr5.4:70434144-70434163 | MS.gene038188:intron | 40.0% | |
| TTGCAGAGGATAAATTGGGA+AGG | - | chr5.4:70434587-70434606 | None:intergenic | 40.0% | |
| TTGGTATGCAATGCAGAGAT+TGG | + | chr5.4:70435304-70435323 | MS.gene038188:intron | 40.0% | |
| ! | ACTCTCTGTTTTGTACTCCA+TGG | + | chr5.4:70435628-70435647 | MS.gene038188:intron | 40.0% |
| ! | GGATTAGGATTAACTGGCTT+CGG | + | chr5.4:70435325-70435344 | MS.gene038188:CDS | 40.0% |
| ! | TCTGGAGTATCCTTAACCAT+TGG | + | chr5.4:70435528-70435547 | MS.gene038188:CDS | 40.0% |
| ! | TGATATTGTGCAGTGGATTC+TGG | + | chr5.4:70435859-70435878 | MS.gene038188:intron | 40.0% |
| ! | TTGGTGTCTACTCCAAACTT+TGG | + | chr5.4:70433826-70433845 | MS.gene038188:intron | 40.0% |
| !! | AGCTTCTTGCTTTAAGACTC+TGG | - | chr5.4:70433932-70433951 | None:intergenic | 40.0% |
| !!! | CATTTTGGGATGGCCTATTT+TGG | + | chr5.4:70435722-70435741 | MS.gene038188:CDS | 40.0% |
| AAACTTTGGGCCAAGGCATA+GGG | + | chr5.4:70433840-70433859 | MS.gene038188:intron | 45.0% | |
| AACGAAGGAACGCAAAGAGA+TGG | - | chr5.4:70433608-70433627 | None:intergenic | 45.0% | |
| AACGCAAAGAGATGGTAACC+AGG | - | chr5.4:70433600-70433619 | None:intergenic | 45.0% | |
| AAGGGATAGGACGGGAAAAT+TGG | + | chr5.4:70433716-70433735 | MS.gene038188:intron | 45.0% | |
| ACAAAATTCCCCCTATGCCT+TGG | - | chr5.4:70433853-70433872 | None:intergenic | 45.0% | |
| AGACACAAATACGACACCAG+GGG | - | chr5.4:70435039-70435058 | None:intergenic | 45.0% | |
| AGAGACAAAAGGGATAGGAC+GGG | + | chr5.4:70433708-70433727 | MS.gene038188:intron | 45.0% | |
| AGGATACTCCAGACACAAAC+AGG | - | chr5.4:70435521-70435540 | None:intergenic | 45.0% | |
| AGTCAAAACAAAGCTTCGGG+GGG | - | chr5.4:70435177-70435196 | None:intergenic | 45.0% | |
| ATAGCAAAACAATGCAGCGG+CGG | + | chr5.4:70434636-70434655 | MS.gene038188:intron | 45.0% | |
| CAGCGAAGATCTTAGTTGGA+AGG | - | chr5.4:70435989-70436008 | None:intergenic | 45.0% | |
| CAGTGGTGTCTGTATTGTGT+TGG | - | chr5.4:70434399-70434418 | None:intergenic | 45.0% | |
| CAGTTCTTTGACCGCTATAG+AGG | + | chr5.4:70436266-70436285 | MS.gene038188:intron | 45.0% | |
| CCCAAGAAATACGCAAAGGT+AGG | - | chr5.4:70433429-70433448 | None:intergenic | 45.0% | |
| CCCTACCTTTGCGTATTTCT+TGG | + | chr5.4:70433425-70433444 | MS.gene038188:intron | 45.0% | |
| CGAAGAAGAAGACAATCCCA+AGG | - | chr5.4:70435366-70435385 | None:intergenic | 45.0% | |
| GCACTCGTTTACCTCTATAG+CGG | - | chr5.4:70436280-70436299 | None:intergenic | 45.0% | |
| GCTTCAGCGAAGATCTTAGT+TGG | - | chr5.4:70435993-70436012 | None:intergenic | 45.0% | |
| GGAAGGAAGGAAGAGACAAA+AGG | + | chr5.4:70433697-70433716 | MS.gene038188:intron | 45.0% | |
| GGACTTCAGTCCAATGGTTA+AGG | - | chr5.4:70435541-70435560 | None:intergenic | 45.0% | |
| GGATAGACGATAAGAGAGAG+AGG | + | chr5.4:70434959-70434978 | MS.gene038188:intron | 45.0% | |
| GGGACGATCTCATTTGGTAT+TGG | + | chr5.4:70435687-70435706 | MS.gene038188:CDS | 45.0% | |
| GTGAGAGACGATACAGTAAC+AGG | - | chr5.4:70434462-70434481 | None:intergenic | 45.0% | |
| TAAATTGGGAAGGAGAACGG+CGG | - | chr5.4:70434577-70434596 | None:intergenic | 45.0% | |
| TACTAGGGGACGATCTCATT+TGG | + | chr5.4:70435681-70435700 | MS.gene038188:intron | 45.0% | |
| TATGAGGGAGAAGCAAACAG+TGG | - | chr5.4:70434490-70434509 | None:intergenic | 45.0% | |
| TCAACAGCCATTCATCCGAT+CGG | + | chr5.4:70435932-70435951 | MS.gene038188:CDS | 45.0% | |
| TGAATGACCCAACCAAGAAC+AGG | - | chr5.4:70435915-70435934 | None:intergenic | 45.0% | |
| TGTCAGATCTGAAAGGTCAG+CGG | + | chr5.4:70434734-70434753 | MS.gene038188:intron | 45.0% | |
| !! | CATAGTGGACTTCAGTCCAA+TGG | - | chr5.4:70435547-70435566 | None:intergenic | 45.0% |
| !! | GATTCGATGGTGGATTAGGA+CGG | + | chr5.4:70434848-70434867 | MS.gene038188:intron | 45.0% |
| !! | TTGGGATTCGATGGTGGATT+AGG | + | chr5.4:70434844-70434863 | MS.gene038188:intron | 45.0% |
| !!! | TTTTGCGGTCACTTTTGCAG+AGG | - | chr5.4:70434601-70434620 | None:intergenic | 45.0% |
| AACCACGACCTTCATCTCAC+CGG | - | chr5.4:70434680-70434699 | None:intergenic | 50.0% | |
| AACTTTGGGCCAAGGCATAG+GGG | + | chr5.4:70433841-70433860 | MS.gene038188:intron | 50.0% | |
| ACTAAAGGCCTCACTGAGTG+TGG | - | chr5.4:70434174-70434193 | None:intergenic | 50.0% | |
| AGAGGGGTGAGTGTGTGTAA+TGG | - | chr5.4:70434529-70434548 | None:intergenic | 50.0% | |
| AGCGGTCAAAGAACTGCAAG+TGG | - | chr5.4:70436262-70436281 | None:intergenic | 50.0% | |
| AGGGAGAAGCAAACAGTGGA+GGG | - | chr5.4:70434486-70434505 | None:intergenic | 50.0% | |
| ATTGACGAGCTGGAGAAGAG+GGG | + | chr5.4:70434821-70434840 | MS.gene038188:intron | 50.0% | |
| CAAACTTTGGGCCAAGGCAT+AGG | + | chr5.4:70433839-70433858 | MS.gene038188:intron | 50.0% | |
| CAGAAAGAATTCCGGCGAAG+AGG | - | chr5.4:70434774-70434793 | None:intergenic | 50.0% | |
| CCAAGTGACCCAGACGTTAT+AGG | - | chr5.4:70433810-70433829 | None:intergenic | 50.0% | |
| CCTATAACGTCTGGGTCACT+TGG | + | chr5.4:70433807-70433826 | MS.gene038188:intron | 50.0% | |
| CTACTCCAAACTTTGGGCCA+AGG | + | chr5.4:70433833-70433852 | MS.gene038188:intron | 50.0% | |
| CTATGCCTTGGCCCAAAGTT+TGG | - | chr5.4:70433841-70433860 | None:intergenic | 50.0% | |
| CTCTTCGCCGGAATTCTTTC+TGG | + | chr5.4:70434772-70434791 | MS.gene038188:intron | 50.0% | |
| GACAAGGGATTGCTAGCCAT+GGG | + | chr5.4:70435385-70435404 | MS.gene038188:CDS | 50.0% | |
| GACCAGGCCAGAAAGAATTC+CGG | - | chr5.4:70434782-70434801 | None:intergenic | 50.0% | |
| GATTGACGAGCTGGAGAAGA+GGG | + | chr5.4:70434820-70434839 | MS.gene038188:intron | 50.0% | |
| GGAAATTACGAGATTGCCCC+TGG | + | chr5.4:70435020-70435039 | MS.gene038188:intron | 50.0% | |
| GGTGGCTAGACAGTTGAAGA+GGG | - | chr5.4:70434546-70434565 | None:intergenic | 50.0% | |
| GTGAGTGTGTGTAATGGTGG+TGG | - | chr5.4:70434523-70434542 | None:intergenic | 50.0% | |
| GTGGCTAGACAGTTGAAGAG+GGG | - | chr5.4:70434545-70434564 | None:intergenic | 50.0% | |
| TAGCAAAACAATGCAGCGGC+GGG | + | chr5.4:70434637-70434656 | MS.gene038188:intron | 50.0% | |
| TGATTGACGAGCTGGAGAAG+AGG | + | chr5.4:70434819-70434838 | MS.gene038188:intron | 50.0% | |
| TGCCAATACACTCAAGGCAC+TGG | - | chr5.4:70433647-70433666 | None:intergenic | 50.0% | |
| TGGTGGCTAGACAGTTGAAG+AGG | - | chr5.4:70434547-70434566 | None:intergenic | 50.0% | |
| ! | GCCAATACACTCAAGGCACT+GGG | - | chr5.4:70433646-70433665 | None:intergenic | 50.0% |
| !! | AGTGTGTGTAATGGTGGTGG+TGG | - | chr5.4:70434520-70434539 | None:intergenic | 50.0% |
| !! | GCCGCTGCATTGTTTTGCTA+TGG | - | chr5.4:70434637-70434656 | None:intergenic | 50.0% |
| ACTTTGGGCCAAGGCATAGG+GGG | + | chr5.4:70433842-70433861 | MS.gene038188:intron | 55.0% | |
| AGCTCGTCAATCACCACCAC+CGG | - | chr5.4:70434812-70434831 | None:intergenic | 55.0% | |
| CAGATCTGAAAGGTCAGCGG+TGG | + | chr5.4:70434737-70434756 | MS.gene038188:intron | 55.0% | |
| CGACAAGGGATTGCTAGCCA+TGG | + | chr5.4:70435384-70435403 | MS.gene038188:CDS | 55.0% | |
| GAAGAGGGGTTGGGATTCGA+TGG | + | chr5.4:70434835-70434854 | MS.gene038188:intron | 55.0% | |
| GAGGGAGAAGCAAACAGTGG+AGG | - | chr5.4:70434487-70434506 | None:intergenic | 55.0% | |
| GCCCAGTGCCTTGAGTGTAT+TGG | + | chr5.4:70433642-70433661 | MS.gene038188:intron | 55.0% | |
| GGGGTGAGTGTGTGTAATGG+TGG | - | chr5.4:70434526-70434545 | None:intergenic | 55.0% | |
| GGTGAGATGAAGGTCGTGGT+TGG | + | chr5.4:70434679-70434698 | MS.gene038188:intron | 55.0% | |
| TTGCACTTGCACCTCTTCGC+CGG | + | chr5.4:70434760-70434779 | MS.gene038188:intron | 55.0% | |
| ! | CAGTGGATTCTGGCCTACAC+TGG | + | chr5.4:70435869-70435888 | MS.gene038188:intron | 55.0% |
| ! | GGTGGTGGTGTGAGCTATGA+GGG | - | chr5.4:70434505-70434524 | None:intergenic | 55.0% |
| !! | TCGATGGTGGATTAGGACGG+CGG | + | chr5.4:70434851-70434870 | MS.gene038188:intron | 55.0% |
| !! | TGGTGGTGGTGTGAGCTATG+AGG | - | chr5.4:70434506-70434525 | None:intergenic | 55.0% |
| ACGAGCTGGAGAAGAGGGGT+TGG | + | chr5.4:70434825-70434844 | MS.gene038188:intron | 60.0% | |
| ATTGGGAAGGAGAACGGCGG+TGG | - | chr5.4:70434574-70434593 | None:intergenic | 60.0% | |
| CAGACCACCACCACCATCAC+CGG | - | chr5.4:70434898-70434917 | None:intergenic | 60.0% | |
| CGAGCTGGAGAAGAGGGGTT+GGG | + | chr5.4:70434826-70434845 | MS.gene038188:intron | 60.0% | |
| GACCGGTGAGATGAAGGTCG+TGG | + | chr5.4:70434675-70434694 | MS.gene038188:intron | 60.0% | |
| GAGGGGTTGGGATTCGATGG+TGG | + | chr5.4:70434838-70434857 | MS.gene038188:intron | 60.0% | |
| GGGGTGGTGACTGATGTCGA+CGG | + | chr5.4:70434872-70434891 | MS.gene038188:intron | 60.0% | |
| TCTGGCCTGGTCTCTCTCAC+CGG | + | chr5.4:70434790-70434809 | MS.gene038188:intron | 60.0% | |
| TGGTGACTGATGTCGACGGC+CGG | + | chr5.4:70434876-70434895 | MS.gene038188:intron | 60.0% | |
| TGGTTGGCGCGAGGGAAAAG+AGG | + | chr5.4:70434695-70434714 | MS.gene038188:intron | 60.0% | |
| TTGGCGCGAGGGAAAAGAGG+AGG | + | chr5.4:70434698-70434717 | MS.gene038188:intron | 60.0% | |
| ! | CAGGTTGGCCACACTCAGTG+AGG | + | chr5.4:70434163-70434182 | MS.gene038188:intron | 60.0% |
| ! | CGCCGGAATTCTTTCTGGCC+TGG | + | chr5.4:70434777-70434796 | MS.gene038188:intron | 60.0% |
| ! | GGTGGTGGTGATTGACGAGC+TGG | + | chr5.4:70434811-70434830 | MS.gene038188:intron | 60.0% |
| !! | CGATGGTGGATTAGGACGGC+GGG | + | chr5.4:70434852-70434871 | MS.gene038188:intron | 60.0% |
| !! | GATGGTGGATTAGGACGGCG+GGG | + | chr5.4:70434853-70434872 | MS.gene038188:intron | 60.0% |
| CACCACCGGTGAGAGAGACC+AGG | - | chr5.4:70434798-70434817 | None:intergenic | 65.0% | |
| CTGATGTCGACGGCCGGTGA+TGG | + | chr5.4:70434882-70434901 | MS.gene038188:intron | 65.0% | |
| CTGGTCTCTCTCACCGGTGG+TGG | + | chr5.4:70434796-70434815 | MS.gene038188:intron | 65.0% | |
| GAAGGTCGTGGTTGGCGCGA+GGG | + | chr5.4:70434687-70434706 | MS.gene038188:intron | 65.0% | |
| GGAGAGAGAGAGGCGACGAC+CGG | + | chr5.4:70434658-70434677 | MS.gene038188:intron | 65.0% | |
| GGCGACGACCGGTGAGATGA+AGG | + | chr5.4:70434669-70434688 | MS.gene038188:intron | 65.0% | |
| TGAAGGTCGTGGTTGGCGCG+AGG | + | chr5.4:70434686-70434705 | MS.gene038188:intron | 65.0% | |
| ! | ATGTCGACGGCCGGTGATGG+TGG | + | chr5.4:70434885-70434904 | MS.gene038188:intron | 65.0% |
| AGAACGGCGGTGGTCGCTGG+TGG | - | chr5.4:70434564-70434583 | None:intergenic | 70.0% | |
| AGGAGAACGGCGGTGGTCGC+TGG | - | chr5.4:70434567-70434586 | None:intergenic | 70.0% | |
| GGCCTGGTCTCTCTCACCGG+TGG | + | chr5.4:70434793-70434812 | MS.gene038188:intron | 70.0% | |
| TGCAGCGGCGGGAGAGAGAG+AGG | + | chr5.4:70434648-70434667 | MS.gene038188:intron | 70.0% | |
| !! | ACGGCCGGTGATGGTGGTGG+TGG | + | chr5.4:70434891-70434910 | MS.gene038188:intron | 70.0% |
| !! | GGTGGATTAGGACGGCGGGG+TGG | + | chr5.4:70434856-70434875 | MS.gene038188:intron | 70.0% |
| !! | TCGACGGCCGGTGATGGTGG+TGG | + | chr5.4:70434888-70434907 | MS.gene038188:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 70433171 | 70436307 | 70433171 | ID=MS.gene038188 |
| chr5.4 | mRNA | 70433171 | 70436307 | 70433171 | ID=MS.gene038188.t1;Parent=MS.gene038188 |
| chr5.4 | exon | 70433171 | 70433186 | 70433171 | ID=MS.gene038188.t1.exon1;Parent=MS.gene038188.t1 |
| chr5.4 | CDS | 70433171 | 70433186 | 70433171 | ID=cds.MS.gene038188.t1;Parent=MS.gene038188.t1 |
| chr5.4 | exon | 70435320 | 70435411 | 70435320 | ID=MS.gene038188.t1.exon2;Parent=MS.gene038188.t1 |
| chr5.4 | CDS | 70435320 | 70435411 | 70435320 | ID=cds.MS.gene038188.t1;Parent=MS.gene038188.t1 |
| chr5.4 | exon | 70435516 | 70435596 | 70435516 | ID=MS.gene038188.t1.exon3;Parent=MS.gene038188.t1 |
| chr5.4 | CDS | 70435516 | 70435596 | 70435516 | ID=cds.MS.gene038188.t1;Parent=MS.gene038188.t1 |
| chr5.4 | exon | 70435687 | 70435784 | 70435687 | ID=MS.gene038188.t1.exon4;Parent=MS.gene038188.t1 |
| chr5.4 | CDS | 70435687 | 70435784 | 70435687 | ID=cds.MS.gene038188.t1;Parent=MS.gene038188.t1 |
| chr5.4 | exon | 70435872 | 70435953 | 70435872 | ID=MS.gene038188.t1.exon5;Parent=MS.gene038188.t1 |
| chr5.4 | CDS | 70435872 | 70435953 | 70435872 | ID=cds.MS.gene038188.t1;Parent=MS.gene038188.t1 |
| chr5.4 | exon | 70436269 | 70436307 | 70436269 | ID=MS.gene038188.t1.exon6;Parent=MS.gene038188.t1 |
| chr5.4 | CDS | 70436269 | 70436307 | 70436269 | ID=cds.MS.gene038188.t1;Parent=MS.gene038188.t1 |
| Gene Sequence |
| Protein sequence |
