AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017439

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017439.t1 MTR_5g078860 79.085 306 17 3 1 259 1 306 8.10e-159 443
MS.gene017439.t1 MTR_5g078800 76.173 277 36 4 1 259 1 265 3.20e-134 379
MS.gene017439.t1 MTR_5g079220 60.150 266 68 11 3 251 17 261 2.87e-88 263
MS.gene017439.t1 MTR_5g079290 54.982 271 80 8 1 253 11 257 1.91e-84 253
MS.gene017439.t1 MTR_5g079120 53.612 263 91 7 1 253 55 296 2.32e-82 249
MS.gene017439.t1 MTR_0001s0360 53.506 271 80 10 1 253 1 243 3.83e-79 239
MS.gene017439.t1 MTR_7g017260 52.381 273 93 10 1 252 19 275 5.98e-78 237
MS.gene017439.t1 MTR_8g060940 55.725 262 78 7 1 253 1 233 1.95e-75 229
MS.gene017439.t1 MTR_5g078950 48.881 268 94 7 1 239 1 254 9.70e-74 226
MS.gene017439.t1 MTR_5g078930 54.128 218 67 6 1 198 3 207 9.67e-67 206
MS.gene017439.t1 MTR_5g078910 63.736 182 44 4 1 173 1 169 2.25e-66 208
MS.gene017439.t1 MTR_0193s0090 51.961 204 71 6 1 196 1 185 5.76e-58 184
MS.gene017439.t1 MTR_0247s0040 69.930 143 35 2 1 136 1 142 1.27e-57 182
MS.gene017439.t1 MTR_0197s0010 42.667 225 97 6 11 209 5 223 8.23e-49 161
MS.gene017439.t1 MTR_0023s0210 74.699 83 21 0 1 83 1 83 1.73e-42 140
MS.gene017439.t1 MTR_4g125520 52.206 136 57 2 4 132 9 143 7.70e-40 140
MS.gene017439.t1 MTR_0008s0390 44.898 147 74 1 2 141 8 154 2.43e-38 135
MS.gene017439.t1 MTR_3g083540 56.881 109 40 1 4 105 38 146 2.61e-37 133
MS.gene017439.t1 MTR_0251s0050 52.800 125 52 1 2 119 8 132 2.72e-37 132
MS.gene017439.t1 MTR_0008s0470 51.562 128 55 1 2 122 8 135 7.64e-37 132
MS.gene017439.t1 MTR_7g115650 55.046 109 42 1 3 104 8 116 1.16e-36 129
MS.gene017439.t1 MTR_1g076150 47.287 129 61 1 3 124 8 136 3.37e-34 124
MS.gene017439.t1 MTR_2g089450 48.175 137 62 3 4 131 9 145 4.21e-34 124
MS.gene017439.t1 MTR_5g079670 54.128 109 43 1 4 105 8 116 6.54e-34 122
MS.gene017439.t1 MTR_7g117730 46.939 147 69 2 4 143 9 153 6.97e-34 123
MS.gene017439.t1 MTR_1g043080 50.909 110 47 1 3 105 8 117 9.06e-34 123
MS.gene017439.t1 MTR_1g043050 50.442 113 49 1 3 108 8 120 1.26e-33 122
MS.gene017439.t1 MTR_8g020490 55.140 107 41 1 5 104 6 112 1.37e-33 122
MS.gene017439.t1 MTR_4g100720 52.991 117 46 2 4 111 10 126 1.73e-33 120
MS.gene017439.t1 MTR_7g010210 53.704 108 43 1 4 104 9 116 2.14e-33 124
MS.gene017439.t1 MTR_8g027345 53.704 108 43 1 4 104 9 116 2.37e-33 123
MS.gene017439.t1 MTR_4g091490 52.252 111 46 1 2 105 8 118 3.22e-33 124
MS.gene017439.t1 MTR_7g010210 53.704 108 43 1 4 104 9 116 3.41e-33 122
MS.gene017439.t1 MTR_3g074520 39.444 180 78 3 4 168 9 172 4.32e-33 123
MS.gene017439.t1 MTR_4g073420 40.491 163 75 3 9 149 14 176 9.75e-33 121
MS.gene017439.t1 MTR_2g011660 52.252 111 46 1 2 105 8 118 1.18e-32 122
MS.gene017439.t1 MTR_1g100653 52.294 109 45 1 3 104 8 116 1.22e-32 121
MS.gene017439.t1 MTR_7g096930 46.212 132 62 2 3 125 8 139 1.34e-32 120
MS.gene017439.t1 MTR_5g029840 54.206 107 42 1 6 105 11 117 2.49e-32 121
MS.gene017439.t1 MTR_5g007370 51.376 109 46 1 4 105 9 117 3.01e-32 120
MS.gene017439.t1 MTR_3g097450 44.521 146 73 2 3 141 8 152 4.09e-32 119
MS.gene017439.t1 MTR_4g478180 52.294 109 45 1 4 105 10 118 8.23e-32 120
MS.gene017439.t1 MTR_3g039990 48.413 126 58 1 3 121 9 134 8.26e-32 119
MS.gene017439.t1 MTR_7g087130 53.211 109 44 1 3 104 8 116 2.57e-31 118
MS.gene017439.t1 MTR_4g105130 39.759 166 84 4 4 160 9 167 5.00e-31 118
MS.gene017439.t1 MTR_0140s0030 51.376 109 46 1 3 104 9 117 5.80e-31 117
MS.gene017439.t1 MTR_0489s0020 51.376 109 46 1 3 104 9 117 5.80e-31 117
MS.gene017439.t1 MTR_2g089420 41.606 137 72 2 6 135 10 145 9.21e-31 119
MS.gene017439.t1 MTR_2g089620 51.376 109 46 1 4 105 9 117 1.18e-30 116
MS.gene017439.t1 MTR_1g112760 49.541 109 48 1 4 105 10 118 2.72e-30 113
MS.gene017439.t1 MTR_7g110830 50.926 108 46 1 4 104 9 116 3.32e-30 116
MS.gene017439.t1 MTR_2g034790 48.624 109 49 1 3 104 8 116 4.16e-30 115
MS.gene017439.t1 MTR_7g076740 51.376 109 45 2 4 104 9 117 4.30e-30 114
MS.gene017439.t1 MTR_4g082290 50.459 109 47 1 3 104 8 116 5.41e-30 116
MS.gene017439.t1 MTR_1g085640 50.000 108 47 1 4 104 9 116 9.68e-30 115
MS.gene017439.t1 MTR_1g100667 48.696 115 52 1 8 115 14 128 1.14e-29 112
MS.gene017439.t1 MTR_4g121460 48.624 109 49 1 3 104 8 116 1.28e-29 114
MS.gene017439.t1 MTR_6g012180 52.941 102 41 1 4 98 9 110 1.57e-29 113
MS.gene017439.t1 MTR_4g082230 50.459 109 47 1 3 104 8 116 1.63e-29 115
MS.gene017439.t1 MTR_4g485530 50.943 106 45 1 9 107 14 119 2.75e-29 109
MS.gene017439.t1 MTR_6g009430 48.624 109 49 1 4 105 9 117 3.81e-29 112
MS.gene017439.t1 MTR_3g077110 48.649 111 50 1 4 107 9 119 3.88e-29 113
MS.gene017439.t1 MTR_8g017540 47.706 109 50 1 4 105 55 163 4.18e-29 113
MS.gene017439.t1 MTR_6g055910 48.246 114 52 1 3 109 10 123 4.26e-29 111
MS.gene017439.t1 MTR_0008s0280 49.057 106 47 1 4 102 9 114 4.35e-29 110
MS.gene017439.t1 MTR_8g017440 49.074 108 48 1 4 104 9 116 4.37e-29 112
MS.gene017439.t1 MTR_7g011170 48.624 109 49 1 3 104 8 116 6.21e-29 111
MS.gene017439.t1 MTR_1g085040 49.074 108 48 1 4 104 9 116 8.04e-29 112
MS.gene017439.t1 MTR_6g012690 50.000 108 47 1 4 104 9 116 8.60e-29 112
MS.gene017439.t1 MTR_8g095390 47.321 112 52 1 3 107 8 119 1.12e-28 111
MS.gene017439.t1 MTR_3g461490 47.706 109 50 1 3 104 8 116 1.53e-28 110
MS.gene017439.t1 MTR_8g017500 47.222 108 50 1 4 104 9 116 1.72e-28 111
MS.gene017439.t1 MTR_8g031360 49.107 112 49 2 2 105 8 119 2.22e-28 110
MS.gene017439.t1 MTR_2g099740 47.706 109 50 1 4 105 9 117 2.77e-28 111
MS.gene017439.t1 MTR_0063s0090 47.619 105 48 1 4 101 9 113 3.42e-28 107
MS.gene017439.t1 MTR_1g110460 37.073 205 106 7 7 200 26 218 3.62e-28 109
MS.gene017439.t1 MTR_1g017000 47.273 110 50 2 4 105 9 118 5.11e-28 107
MS.gene017439.t1 MTR_5g014990 43.802 121 60 2 4 116 9 129 6.17e-28 108
MS.gene017439.t1 MTR_3g103570 36.571 175 98 4 4 169 9 179 8.62e-28 109
MS.gene017439.t1 MTR_5g042030 46.429 112 53 1 1 105 1 112 1.03e-27 108
MS.gene017439.t1 MTR_1g017140 37.500 152 84 3 4 144 9 160 1.17e-27 108
MS.gene017439.t1 MTR_3g052430 48.077 104 47 1 7 103 41 144 2.96e-27 110
MS.gene017439.t1 MTR_2g064160 45.045 111 54 1 4 107 8 118 3.07e-27 107
MS.gene017439.t1 MTR_7g111290 53.000 100 40 1 4 96 9 108 6.38e-27 107
MS.gene017439.t1 MTR_3g052450 47.115 104 48 1 7 103 40 143 1.19e-26 108
MS.gene017439.t1 MTR_8g098860 45.370 108 52 1 4 104 9 116 1.23e-26 105
MS.gene017439.t1 MTR_3g011610 46.667 105 49 1 7 104 37 141 2.02e-26 107
MS.gene017439.t1 MTR_8g017390 47.273 110 50 2 4 105 9 118 2.04e-26 107
MS.gene017439.t1 MTR_7g102110 47.059 119 55 2 4 114 9 127 2.46e-26 103
MS.gene017439.t1 MTR_4g102380 47.706 109 50 1 4 105 9 117 4.35e-26 103
MS.gene017439.t1 MTR_8g017340 46.364 110 51 2 4 105 9 118 4.92e-26 106
MS.gene017439.t1 MTR_8g042410 48.077 104 47 1 7 103 37 140 4.97e-26 106
MS.gene017439.t1 MTR_8g017350 46.364 110 51 2 4 105 9 118 6.62e-26 106
MS.gene017439.t1 MTR_2g097910 44.762 105 51 1 7 104 20 124 9.21e-26 103
MS.gene017439.t1 MTR_4g097570 35.593 177 98 6 4 171 9 178 9.94e-26 102
MS.gene017439.t1 MTR_1g045610 44.000 125 60 2 8 125 22 143 1.09e-25 102
MS.gene017439.t1 MTR_7g035075 43.590 117 57 2 7 116 14 128 1.14e-25 100
MS.gene017439.t1 MTR_4g065017 45.714 105 50 1 7 104 17 121 1.25e-25 103
MS.gene017439.t1 MTR_5g078140 49.074 108 48 1 4 104 9 116 1.33e-25 103
MS.gene017439.t1 MTR_6g090405 46.364 110 51 2 4 105 9 118 1.41e-25 101
MS.gene017439.t1 MTR_3g065440 49.074 108 48 1 4 104 9 116 1.42e-25 102
MS.gene017439.t1 MTR_1g021230 48.077 104 47 1 7 103 57 160 3.87e-25 103
MS.gene017439.t1 MTR_2g067420 46.078 102 48 1 4 98 11 112 3.96e-25 102
MS.gene017439.t1 MTR_5g007300 55.000 80 36 0 4 83 61 140 5.72e-25 97.1
MS.gene017439.t1 MTR_2g096380 44.037 109 54 1 7 108 6 114 5.89e-25 99.4
MS.gene017439.t1 MTR_1g073170 43.902 123 59 2 8 123 21 140 9.74e-25 99.4
MS.gene017439.t1 MTR_4g057635 46.364 110 51 2 4 105 9 118 9.80e-25 100
MS.gene017439.t1 MTR_1g086510 46.364 110 52 1 2 104 16 125 1.04e-24 99.4
MS.gene017439.t1 MTR_2g088170 45.455 110 53 1 1 103 23 132 1.09e-24 102
MS.gene017439.t1 MTR_3g028740 43.519 108 54 1 4 104 19 126 1.20e-24 100
MS.gene017439.t1 MTR_1g083630 47.619 105 48 1 7 104 12 116 1.70e-24 102
MS.gene017439.t1 MTR_6g006030 45.714 105 50 1 7 104 14 118 2.72e-24 97.1
MS.gene017439.t1 MTR_5g010020 45.098 102 49 1 4 98 9 110 3.17e-24 99.8
MS.gene017439.t1 MTR_4g097570 35.393 178 98 7 4 171 9 179 4.55e-24 98.6
MS.gene017439.t1 MTR_4g063100 44.660 103 50 1 8 103 8 110 5.21e-24 97.4
MS.gene017439.t1 MTR_1g062940 45.045 111 54 1 7 110 6 116 5.56e-24 96.3
MS.gene017439.t1 MTR_7g109320 45.872 109 52 1 3 104 8 116 5.63e-24 99.4
MS.gene017439.t1 MTR_2g095520 47.573 103 46 2 4 98 9 111 1.38e-23 97.4
MS.gene017439.t1 MTR_4g128670 47.573 103 46 2 4 98 9 111 2.05e-23 97.4
MS.gene017439.t1 MTR_1g086530 44.762 105 51 1 7 104 33 137 4.32e-23 95.5
MS.gene017439.t1 MTR_0023s0260 38.798 183 88 8 80 251 6 175 3.39e-22 90.5
MS.gene017439.t1 MTR_5g088080 41.748 103 52 1 8 102 13 115 6.57e-22 92.0
MS.gene017439.t1 MTR_5g088150 41.748 103 52 1 8 102 13 115 6.57e-22 92.0
MS.gene017439.t1 MTR_5g488210 41.748 103 52 1 8 102 13 115 6.57e-22 92.0
MS.gene017439.t1 MTR_5g488170 41.748 103 52 1 8 102 13 115 7.30e-22 91.3
MS.gene017439.t1 MTR_5g088640 41.748 103 52 1 8 102 13 115 8.93e-22 91.7
MS.gene017439.t1 MTR_5g062790 41.284 109 54 2 8 108 10 116 1.86e-21 91.7
MS.gene017439.t1 MTR_5g079140 42.520 127 47 4 79 196 9 118 6.57e-21 86.3
MS.gene017439.t1 MTR_1g026870 40.952 105 54 2 7 104 83 186 2.29e-20 90.5
MS.gene017439.t1 MTR_2g033170 45.714 105 50 1 7 104 24 128 2.82e-20 88.6
MS.gene017439.t1 MTR_4g019370 38.793 116 63 2 9 117 38 152 5.93e-20 88.2
MS.gene017439.t1 MTR_5g088610 40.777 103 53 1 8 102 10 112 7.15e-20 87.8
MS.gene017439.t1 MTR_3g045430 39.091 110 60 1 2 104 8 117 1.69e-19 85.9
MS.gene017439.t1 MTR_6g055910 50.649 77 31 1 40 109 18 94 5.19e-19 84.0
MS.gene017439.t1 MTR_4g123040 44.444 108 53 1 2 102 19 126 6.46e-19 84.7
MS.gene017439.t1 MTR_5g041570 41.176 102 52 2 9 103 134 234 7.34e-19 85.5
MS.gene017439.t1 MTR_4g082040 40.196 102 53 2 9 103 105 205 9.54e-19 85.1
MS.gene017439.t1 MTR_5g016510 40.196 102 53 2 9 103 5 105 1.23e-18 84.0
MS.gene017439.t1 MTR_5g049190 31.414 191 108 6 4 187 14 188 1.52e-18 82.4
MS.gene017439.t1 MTR_4g094982 40.196 102 53 2 9 103 5 105 1.57e-18 82.8
MS.gene017439.t1 MTR_3g110028 38.095 105 57 2 7 104 83 186 3.55e-18 84.3
MS.gene017439.t1 MTR_7g061330 40.952 105 54 2 7 104 111 214 6.06e-18 83.2
MS.gene017439.t1 MTR_7g461410 40.952 105 54 2 7 104 111 214 6.06e-18 83.2
MS.gene017439.t1 MTR_4g128190 39.623 106 43 2 5 102 9 101 8.32e-18 80.5
MS.gene017439.t1 MTR_7g037260 40.187 107 56 2 9 108 145 250 1.06e-17 81.6
MS.gene017439.t1 MTR_7g061330 40.952 105 54 2 7 104 75 178 1.23e-17 82.4
MS.gene017439.t1 MTR_3g077650 32.500 160 97 4 1 151 173 330 3.20e-17 80.9
MS.gene017439.t1 MTR_3g089045 37.008 127 67 3 2 121 9 129 3.83e-17 79.3
MS.gene017439.t1 MTR_4g105660 38.596 114 60 3 2 107 173 284 5.09e-17 80.1
MS.gene017439.t1 MTR_5g070020 33.540 161 89 5 2 151 115 268 6.13e-17 79.7
MS.gene017439.t1 MTR_1g057980 39.252 107 57 2 2 101 73 178 8.63e-17 78.6
MS.gene017439.t1 MTR_3g101290 37.864 103 56 2 9 104 37 138 9.96e-17 77.0
MS.gene017439.t1 MTR_7g086960 41.176 102 52 2 9 103 89 189 2.00e-16 78.2
MS.gene017439.t1 MTR_4g088015 33.333 150 76 3 3 129 215 363 2.12e-16 78.6
MS.gene017439.t1 MTR_8g006470 40.179 112 57 3 4 107 7 116 2.12e-16 77.4
MS.gene017439.t1 MTR_3g463400 37.615 109 60 2 7 108 131 238 2.36e-16 78.6
MS.gene017439.t1 MTR_2g096380 48.052 77 33 1 39 108 19 95 3.46e-16 75.5
MS.gene017439.t1 MTR_7g111290 53.030 66 24 1 39 97 2 67 4.35e-16 77.0
MS.gene017439.t1 MTR_6g074860 37.624 101 55 2 9 102 4 103 5.64e-16 75.5
MS.gene017439.t1 MTR_1g085880 41.121 107 54 2 5 102 9 115 1.05e-15 73.6
MS.gene017439.t1 MTR_6g027360 40.404 99 51 2 7 98 76 173 1.09e-15 75.5
MS.gene017439.t1 MTR_6g027340 40.206 97 50 2 9 98 16 111 1.20e-15 73.9
MS.gene017439.t1 MTR_6g015455 39.623 106 48 3 9 103 5 105 1.24e-15 76.6
MS.gene017439.t1 MTR_4g063100 48.611 72 30 1 39 103 10 81 1.67e-15 73.9
MS.gene017439.t1 MTR_1g085770 41.121 107 54 2 5 102 9 115 2.33e-15 74.7
MS.gene017439.t1 MTR_7g061550 41.667 96 47 2 12 98 10 105 2.47e-15 75.1
MS.gene017439.t1 MTR_6g027370 39.216 102 54 2 9 103 99 199 3.08e-15 74.7
MS.gene017439.t1 MTR_7g451170 37.383 107 59 2 9 108 191 296 3.48e-15 74.7
MS.gene017439.t1 MTR_4g029540 30.168 179 102 6 7 174 10 176 5.12e-15 73.6
MS.gene017439.t1 MTR_7g035350 39.000 100 53 2 9 101 225 323 3.13e-14 72.0
MS.gene017439.t1 MTR_5g082910 36.893 103 49 3 9 100 19 116 2.50e-13 68.6
MS.gene017439.t1 MTR_7g037130 36.364 110 60 3 9 111 145 251 5.33e-13 68.2
MS.gene017439.t1 MTR_5g010650 29.379 177 105 6 7 171 108 276 7.42e-13 68.2
MS.gene017439.t1 MTR_7g450950 28.873 142 92 3 9 143 157 296 2.31e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017439.t1 AT1G66370 48.261 230 77 8 2 209 3 212 3.54e-53 172
MS.gene017439.t1 AT1G56650 59.155 142 48 2 5 136 6 147 9.43e-44 149
MS.gene017439.t1 AT1G66390 45.909 220 94 5 5 211 6 213 2.80e-43 147
MS.gene017439.t1 AT1G66380 71.560 109 24 1 5 106 6 114 4.59e-43 143
MS.gene017439.t1 AT3G13540 55.046 109 42 1 4 105 20 128 3.26e-37 132
MS.gene017439.t1 AT3G23250 36.029 272 140 11 3 252 8 267 4.30e-35 127
MS.gene017439.t1 AT5G14750 40.606 165 85 4 8 164 17 176 5.23e-35 124
MS.gene017439.t1 AT5G16770 57.009 107 39 1 6 105 11 117 5.81e-35 128
MS.gene017439.t1 AT5G16770 57.009 107 39 1 6 105 11 117 5.81e-35 128
MS.gene017439.t1 AT5G16770 55.963 109 41 1 4 105 9 117 7.17e-35 128
MS.gene017439.t1 AT5G16770 55.963 109 41 1 4 105 9 117 7.17e-35 128
MS.gene017439.t1 AT3G27920 53.333 105 42 1 8 105 15 119 1.85e-34 124
MS.gene017439.t1 AT5G40330 52.294 109 45 1 3 104 8 116 2.75e-34 123
MS.gene017439.t1 AT1G22640 51.786 112 47 1 3 107 8 119 4.49e-34 124
MS.gene017439.t1 AT5G60890 53.211 109 44 1 3 104 8 116 5.90e-34 124
MS.gene017439.t1 AT4G09460 43.662 142 73 1 9 143 14 155 8.76e-34 122
MS.gene017439.t1 AT3G02940 55.046 109 42 1 4 105 9 117 1.17e-33 124
MS.gene017439.t1 AT3G02940 55.046 109 42 1 4 105 9 117 1.59e-33 124
MS.gene017439.t1 AT3G02940 55.046 109 42 1 4 105 9 117 1.59e-33 124
MS.gene017439.t1 AT4G17785 53.153 111 45 1 2 105 8 118 1.79e-33 124
MS.gene017439.t1 AT4G38620 55.660 106 40 1 9 107 14 119 1.92e-33 123
MS.gene017439.t1 AT4G17785 53.153 111 45 1 2 105 8 118 2.08e-33 124
MS.gene017439.t1 AT1G66380 75.949 79 19 0 5 83 6 84 3.88e-33 117
MS.gene017439.t1 AT5G65230 54.206 107 42 1 6 105 11 117 2.02e-32 120
MS.gene017439.t1 AT5G35550 47.899 119 54 2 3 114 10 127 3.69e-32 119
MS.gene017439.t1 AT4G05100 51.351 111 47 1 2 105 8 118 4.53e-32 120
MS.gene017439.t1 AT5G10280 40.476 168 77 2 1 161 6 157 4.63e-32 120
MS.gene017439.t1 AT3G47600 54.630 108 42 1 4 104 9 116 5.04e-32 120
MS.gene017439.t1 AT4G21440 51.818 110 46 1 3 105 8 117 5.68e-32 120
MS.gene017439.t1 AT5G07700 52.778 108 44 1 5 105 10 117 6.20e-32 120
MS.gene017439.t1 AT5G07700 52.778 108 44 1 5 105 10 117 6.20e-32 120
MS.gene017439.t1 AT1G18570 52.294 109 45 1 6 107 12 120 7.25e-32 120
MS.gene017439.t1 AT3G30210 31.061 264 152 7 6 258 26 270 7.92e-32 118
MS.gene017439.t1 AT1G08810 47.656 128 58 2 4 124 9 134 8.38e-32 118
MS.gene017439.t1 AT5G61420 50.926 108 46 1 5 105 10 117 9.57e-32 120
MS.gene017439.t1 AT3G48920 45.161 124 61 1 1 117 12 135 1.02e-31 117
MS.gene017439.t1 AT5G07690 50.909 110 47 1 5 107 10 119 1.23e-31 119
MS.gene017439.t1 AT2G16720 49.107 112 50 1 3 107 8 119 1.75e-31 117
MS.gene017439.t1 AT5G62470 50.847 118 51 1 3 113 8 125 1.86e-31 119
MS.gene017439.t1 AT1G34670 53.211 109 44 1 4 105 9 117 2.37e-31 119
MS.gene017439.t1 AT3G61250 49.580 119 48 2 4 110 9 127 2.60e-31 117
MS.gene017439.t1 AT3G28910 53.704 108 43 1 4 104 9 116 2.98e-31 118
MS.gene017439.t1 AT1G74650 50.893 112 48 1 7 111 12 123 4.35e-31 117
MS.gene017439.t1 AT4G01680 51.852 108 45 1 4 104 9 116 5.06e-31 115
MS.gene017439.t1 AT1G74080 47.321 112 52 1 3 107 8 119 6.48e-31 117
MS.gene017439.t1 AT1G06180 47.500 120 56 1 3 115 8 127 6.81e-31 115
MS.gene017439.t1 AT5G54230 51.887 106 44 1 7 105 12 117 7.21e-31 117
MS.gene017439.t1 AT4G34990 51.923 104 43 1 9 105 14 117 8.91e-31 115
MS.gene017439.t1 AT5G52600 48.739 119 54 1 2 113 7 125 9.64e-31 114
MS.gene017439.t1 AT4G28110 48.624 109 49 1 4 105 9 117 9.92e-31 115
MS.gene017439.t1 AT2G31180 50.459 109 47 1 3 104 8 116 1.07e-30 115
MS.gene017439.t1 AT1G35515 41.026 156 67 4 3 144 8 152 1.09e-30 114
MS.gene017439.t1 AT4G01680 51.351 111 47 1 4 107 9 119 1.49e-30 116
MS.gene017439.t1 AT3G01140 51.376 109 46 1 4 105 9 117 2.17e-30 116
MS.gene017439.t1 AT1G57560 31.786 280 165 6 4 258 9 287 4.81e-30 114
MS.gene017439.t1 AT3G01140 51.376 109 46 1 4 105 52 160 4.90e-30 116
MS.gene017439.t1 AT1G16490 44.000 125 63 1 4 121 11 135 5.32e-30 114
MS.gene017439.t1 AT5G15310 50.459 109 47 1 4 105 9 117 5.63e-30 114
MS.gene017439.t1 AT5G15310 50.459 109 47 1 4 105 9 117 5.91e-30 114
MS.gene017439.t1 AT5G62470 50.847 118 50 2 3 113 8 124 7.48e-30 115
MS.gene017439.t1 AT5G15310 50.459 109 47 1 4 105 9 117 1.08e-29 112
MS.gene017439.t1 AT5G49330 47.748 111 51 1 3 106 8 118 1.26e-29 114
MS.gene017439.t1 AT1G74430 50.943 106 45 1 6 104 11 116 1.52e-29 112
MS.gene017439.t1 AT3G13890 47.706 109 50 1 4 105 9 117 2.69e-29 113
MS.gene017439.t1 AT5G26660 50.000 108 47 1 4 104 9 116 2.94e-29 113
MS.gene017439.t1 AT5G56110 49.541 109 48 1 3 104 8 116 3.32e-29 112
MS.gene017439.t1 AT1G57560 47.748 111 51 1 4 107 9 119 4.16e-29 111
MS.gene017439.t1 AT5G57620 45.600 125 60 2 4 120 9 133 1.13e-28 111
MS.gene017439.t1 AT5G23000 38.150 173 91 4 4 168 9 173 1.33e-28 111
MS.gene017439.t1 AT3G46130 46.087 115 55 1 1 108 3 117 2.25e-28 108
MS.gene017439.t1 AT1G09540 47.748 111 51 1 4 107 9 119 2.32e-28 111
MS.gene017439.t1 AT2G32460 49.057 106 47 1 5 103 16 121 4.84e-28 112
MS.gene017439.t1 AT2G32460 49.057 106 47 1 5 103 4 109 5.67e-28 111
MS.gene017439.t1 AT5G62320 39.264 163 82 4 6 151 12 174 6.91e-28 107
MS.gene017439.t1 AT3G28470 49.020 102 45 1 4 98 9 110 6.93e-28 108
MS.gene017439.t1 AT2G26960 49.057 106 47 1 4 102 17 122 7.11e-28 110
MS.gene017439.t1 AT3G62610 35.294 187 87 4 3 174 8 175 8.66e-28 109
MS.gene017439.t1 AT1G18710 49.057 106 47 1 6 104 11 116 1.02e-27 107
MS.gene017439.t1 AT5G65790 45.385 130 61 3 4 123 9 138 1.02e-27 109
MS.gene017439.t1 AT5G55020 51.456 103 43 1 7 102 26 128 1.13e-27 111
MS.gene017439.t1 AT4G26930 50.485 103 44 1 7 102 19 121 1.31e-27 109
MS.gene017439.t1 AT5G59780 48.148 108 49 1 8 108 9 116 1.63e-27 106
MS.gene017439.t1 AT1G25340 41.209 182 76 5 8 160 19 198 1.64e-27 107
MS.gene017439.t1 AT3G12720 41.538 130 64 2 4 126 19 143 1.78e-27 107
MS.gene017439.t1 AT1G79180 46.296 108 51 1 4 104 11 118 3.69e-27 106
MS.gene017439.t1 AT2G47460 44.954 109 53 1 3 104 8 116 3.86e-27 108
MS.gene017439.t1 AT4G01680 46.341 123 47 2 4 107 9 131 3.86e-27 107
MS.gene017439.t1 AT4G25560 49.515 103 45 1 8 103 11 113 4.14e-27 106
MS.gene017439.t1 AT4G37780 45.133 113 54 2 4 108 9 121 4.14e-27 106
MS.gene017439.t1 AT1G56160 45.455 110 53 1 4 106 11 120 7.21e-27 105
MS.gene017439.t1 AT3G01530 46.364 110 52 1 2 104 20 129 7.92e-27 103
MS.gene017439.t1 AT3G49690 47.899 119 52 3 4 112 9 127 8.07e-27 106
MS.gene017439.t1 AT5G12870 44.860 107 52 1 5 104 16 122 8.18e-27 105
MS.gene017439.t1 AT3G11440 44.444 108 53 1 3 103 37 144 1.29e-26 107
MS.gene017439.t1 AT3G11440 44.444 108 53 1 3 103 37 144 2.12e-26 107
MS.gene017439.t1 AT3G11440 44.444 108 53 1 3 103 37 144 2.12e-26 107
MS.gene017439.t1 AT3G11440 44.444 108 53 1 3 103 37 144 2.12e-26 107
MS.gene017439.t1 AT3G13890 44.068 118 50 2 4 105 9 126 2.54e-26 105
MS.gene017439.t1 AT3G12820 44.144 111 55 1 4 107 11 121 2.65e-26 103
MS.gene017439.t1 AT3G24310 44.094 127 61 2 4 123 15 138 3.28e-26 103
MS.gene017439.t1 AT4G13480 48.305 118 53 2 8 118 7 123 3.59e-26 103
MS.gene017439.t1 AT2G47190 44.545 110 54 1 2 104 15 124 3.62e-26 103
MS.gene017439.t1 AT5G52260 51.402 107 45 1 4 103 9 115 6.01e-26 102
MS.gene017439.t1 AT5G06100 43.810 105 52 1 6 103 31 135 9.11e-26 105
MS.gene017439.t1 AT5G40350 33.516 182 110 4 7 180 17 195 1.43e-25 100
MS.gene017439.t1 AT5G06100 43.810 105 52 1 6 103 31 135 1.43e-25 105
MS.gene017439.t1 AT5G06100 43.810 105 52 1 6 103 31 135 1.43e-25 105
MS.gene017439.t1 AT5G06100 43.810 105 52 1 6 103 31 135 1.43e-25 105
MS.gene017439.t1 AT5G06100 43.810 105 52 1 6 103 31 135 1.43e-25 105
MS.gene017439.t1 AT1G63910 44.444 108 53 1 4 104 9 116 1.45e-25 103
MS.gene017439.t1 AT1G68320 50.476 105 45 1 7 104 19 123 1.74e-25 102
MS.gene017439.t1 AT3G53200 46.364 110 52 1 1 103 3 112 2.08e-25 100
MS.gene017439.t1 AT4G22680 46.789 109 51 1 4 105 9 117 2.33e-25 101
MS.gene017439.t1 AT1G66230 48.148 108 49 1 4 104 9 116 3.25e-25 101
MS.gene017439.t1 AT3G08500 45.370 108 52 1 4 104 27 134 5.45e-25 101
MS.gene017439.t1 AT5G14340 47.222 108 50 1 4 104 21 128 5.54e-25 100
MS.gene017439.t1 AT1G48000 48.544 103 46 1 7 102 32 134 1.68e-24 98.6
MS.gene017439.t1 AT5G16600 47.222 108 50 1 4 104 9 116 2.11e-24 100
MS.gene017439.t1 AT1G25340 40.110 182 73 6 8 160 19 193 3.16e-24 98.6
MS.gene017439.t1 AT4G12350 45.283 106 51 1 7 105 12 117 4.16e-24 98.6
MS.gene017439.t1 AT3G27810 44.762 105 51 1 7 104 20 124 5.45e-24 96.7
MS.gene017439.t1 AT1G25340 40.110 182 73 6 8 160 19 193 5.86e-24 98.6
MS.gene017439.t1 AT2G36890 47.273 110 50 2 4 105 9 118 6.06e-24 98.2
MS.gene017439.t1 AT2G36890 47.273 110 50 2 4 105 50 159 6.43e-24 99.0
MS.gene017439.t1 AT5G14750 40.299 134 64 5 34 159 12 137 5.76e-23 92.4
MS.gene017439.t1 AT1G69560 35.971 139 77 3 4 135 102 235 1.03e-22 95.5
MS.gene017439.t1 AT1G69560 35.971 139 77 3 4 135 118 251 1.15e-22 95.5
MS.gene017439.t1 AT2G26950 40.517 116 59 2 1 106 10 125 2.48e-22 95.1
MS.gene017439.t1 AT5G11510 42.857 105 52 2 7 104 79 182 1.01e-21 94.7
MS.gene017439.t1 AT5G11510 42.857 105 52 2 7 104 79 182 1.01e-21 94.7
MS.gene017439.t1 AT5G11510 42.857 105 52 2 7 104 79 182 1.01e-21 94.7
MS.gene017439.t1 AT1G66380 69.444 72 15 1 39 103 7 78 1.77e-21 86.7
MS.gene017439.t1 AT5G11510 42.857 105 52 2 7 104 79 182 1.83e-21 94.0
MS.gene017439.t1 AT5G11510 42.857 105 52 2 7 104 79 182 1.95e-21 93.6
MS.gene017439.t1 AT1G79180 34.752 141 52 2 4 104 11 151 6.22e-21 90.5
MS.gene017439.t1 AT3G06490 45.045 111 54 1 1 104 13 123 3.24e-20 88.6
MS.gene017439.t1 AT5G35550 51.220 82 32 2 40 114 50 130 5.33e-20 86.7
MS.gene017439.t1 AT4G18770 41.026 117 53 3 3 108 211 322 2.56e-19 87.0
MS.gene017439.t1 AT1G26780 42.308 104 52 2 7 103 96 198 3.22e-19 85.1
MS.gene017439.t1 AT1G26780 42.308 104 52 2 7 103 96 198 3.36e-19 85.9
MS.gene017439.t1 AT5G49620 44.037 109 54 1 1 102 20 128 3.77e-19 85.1
MS.gene017439.t1 AT3G47600 58.333 72 23 1 40 104 39 110 4.38e-19 85.5
MS.gene017439.t1 AT3G53200 51.948 77 30 1 34 103 3 79 4.69e-19 83.2
MS.gene017439.t1 AT3G09230 42.308 104 52 2 9 105 55 157 6.04e-19 85.5
MS.gene017439.t1 AT4G37260 41.176 102 52 2 9 103 13 113 6.10e-19 84.7
MS.gene017439.t1 AT5G02320 40.000 105 55 2 7 104 125 228 9.04e-19 85.9
MS.gene017439.t1 AT5G02320 40.000 105 55 2 7 104 125 228 9.04e-19 85.9
MS.gene017439.t1 AT5G26660 48.052 77 33 1 35 104 9 85 9.38e-19 84.3
MS.gene017439.t1 AT3G09370 40.385 104 54 2 7 103 128 230 1.46e-18 85.1
MS.gene017439.t1 AT5G02320 40.000 105 55 2 7 104 65 168 1.49e-18 85.1
MS.gene017439.t1 AT4G32730 39.048 105 56 2 7 104 85 188 1.49e-18 85.5
MS.gene017439.t1 AT4G32730 39.048 105 56 2 7 104 85 188 1.49e-18 85.5
MS.gene017439.t1 AT4G32730 39.048 105 56 2 7 104 85 188 1.49e-18 85.5
MS.gene017439.t1 AT4G32730 39.048 105 56 2 7 104 85 188 1.49e-18 85.5
MS.gene017439.t1 AT3G09370 40.385 104 54 2 7 103 133 235 1.55e-18 85.1
MS.gene017439.t1 AT4G32730 39.048 105 56 2 7 104 85 188 1.57e-18 85.1
MS.gene017439.t1 AT3G09370 40.385 104 54 2 7 103 141 243 2.46e-18 84.3
MS.gene017439.t1 AT3G55730 42.157 102 51 2 9 103 56 156 3.27e-18 83.6
MS.gene017439.t1 AT2G23290 41.176 102 52 2 9 103 13 113 5.56e-18 82.0
MS.gene017439.t1 AT2G39880 41.509 106 46 3 9 103 50 150 8.51e-18 82.0
MS.gene017439.t1 AT5G59780 50.000 78 32 1 38 108 18 95 1.01e-17 79.7
MS.gene017439.t1 AT3G46130 50.000 78 32 1 38 108 18 95 1.52e-17 79.7
MS.gene017439.t1 AT2G37630 40.517 116 54 3 12 118 7 116 1.79e-17 81.3
MS.gene017439.t1 AT3G12820 48.611 72 30 1 43 107 2 73 1.94e-17 78.6
MS.gene017439.t1 AT5G17800 34.127 126 72 3 9 127 93 214 2.33e-17 80.5
MS.gene017439.t1 AT4G33450 33.333 135 78 3 3 130 13 142 2.41e-17 79.3
MS.gene017439.t1 AT3G46130 49.351 77 32 1 39 108 9 85 3.48e-17 78.6
MS.gene017439.t1 AT5G67300 41.176 102 52 2 9 103 6 106 4.24e-17 79.7
MS.gene017439.t1 AT3G60460 39.815 108 57 2 3 102 7 114 5.05e-17 79.3
MS.gene017439.t1 AT5G49620 39.024 123 54 1 1 102 20 142 6.58e-17 79.3
MS.gene017439.t1 AT1G17950 37.500 112 56 3 9 107 5 115 7.20e-17 78.2
MS.gene017439.t1 AT5G58850 36.522 115 65 2 5 112 101 214 8.42e-17 79.7
MS.gene017439.t1 AT3G27785 38.889 108 58 2 3 103 183 289 1.66e-16 79.0
MS.gene017439.t1 AT3G50060 34.375 128 68 3 9 121 6 132 2.39e-16 77.4
MS.gene017439.t1 AT1G73410 39.252 107 49 3 9 104 6 107 1.28e-15 74.3
MS.gene017439.t1 AT5G11050 35.135 111 64 2 5 108 101 210 2.00e-15 75.9
MS.gene017439.t1 AT5G40350 30.872 149 92 4 40 180 5 150 2.36e-15 72.0
MS.gene017439.t1 AT3G29020 37.500 104 55 3 9 104 67 168 2.51e-15 74.7
MS.gene017439.t1 AT3G29020 37.500 104 55 3 9 104 65 166 2.67e-15 73.6
MS.gene017439.t1 AT1G73410 39.252 107 49 3 9 104 6 107 3.17e-15 72.8
MS.gene017439.t1 AT5G14750 36.522 115 60 4 53 159 1 110 8.98e-15 70.1
MS.gene017439.t1 AT5G14750 36.522 115 60 4 53 159 1 110 8.98e-15 70.1
MS.gene017439.t1 AT5G39700 37.719 114 62 3 2 108 49 160 1.07e-14 70.9
MS.gene017439.t1 AT5G40360 37.037 108 60 2 2 102 151 257 1.91e-14 72.4
MS.gene017439.t1 AT3G27810 45.833 72 32 1 40 104 4 75 2.13e-14 69.7
MS.gene017439.t1 AT3G23250 33.040 227 108 13 53 252 1 210 3.15e-14 70.5
MS.gene017439.t1 AT1G71030 47.059 68 29 1 45 105 4 71 3.56e-14 69.3
MS.gene017439.t1 AT1G71030 47.059 68 29 1 45 105 18 85 4.29e-14 69.3
MS.gene017439.t1 AT2G25230 36.449 107 60 2 3 102 20 125 4.96e-13 67.0
MS.gene017439.t1 AT1G18960 34.951 103 57 3 9 104 10 109 1.04e-12 67.0
MS.gene017439.t1 AT1G22640 46.774 62 26 1 53 107 1 62 1.11e-12 65.5
MS.gene017439.t1 AT4G00540 36.111 108 58 3 7 104 101 207 1.54e-12 67.0
MS.gene017439.t1 AT4G00540 36.111 108 58 3 7 104 99 205 1.87e-12 67.0
MS.gene017439.t1 AT5G40430 35.514 107 60 3 3 102 48 152 1.16e-11 63.5

Find 58 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCTCTTTATTACAAAA+TGG 0.152251 5.1:-61510549 MS.gene017439:CDS
GAAGAAGAATCAATGAGATT+TGG 0.252949 5.1:+61510783 None:intergenic
CCAATCGGAATCACTGAGTA+TGG 0.260359 5.1:+61510476 None:intergenic
CTAATGATGTGAAGAATTAT+TGG 0.279813 5.1:-61510938 MS.gene017439:CDS
GATTGGGATTTCAATTCCTT+TGG 0.296288 5.1:-61510459 MS.gene017439:CDS
TCTAAGGTTACACAAACTTC+TGG 0.313574 5.1:-61511101 MS.gene017439:CDS
AAGAAGAATCAATGAGATTT+GGG 0.321143 5.1:+61510784 None:intergenic
ATGAAATTGATATGATTCTA+AGG 0.328127 5.1:-61511117 MS.gene017439:CDS
ACAAGTATGGTGAAGGAAAA+TGG 0.332221 5.1:-61511339 MS.gene017439:CDS
GTTTGTGCATCACCAACATT+TGG 0.334779 5.1:+61510657 None:intergenic
GAAAGAAGCAATGAGAAAAT+TGG 0.341266 5.1:-61510573 MS.gene017439:CDS
AAACTTTCTCTGTTGATTGC+GGG 0.342162 5.1:+61511148 None:intergenic
TTGATTGCTGCAAGGCTTCC+GGG 0.348445 5.1:-61510969 MS.gene017439:intron
ATTGGGATTTCAATTCCTTT+GGG 0.360516 5.1:-61510458 MS.gene017439:CDS
CTTGCTCTTTATTACAAAAT+GGG 0.361773 5.1:-61510548 MS.gene017439:CDS
ATTGATTGCTGCAAGGCTTC+CGG 0.362167 5.1:-61510970 MS.gene017439:intron
ATACACATACCTGTTCGTTT+AGG 0.382825 5.1:+61511307 None:intergenic
CTTGAAGCTACTAGTGTTGT+TGG 0.388628 5.1:+61510723 None:intergenic
AAGGCTTGTATTCACAAGTA+TGG 0.409527 5.1:-61511352 MS.gene017439:CDS
ACATATATACAGGTTTGAAT+AGG 0.418111 5.1:-61511213 MS.gene017439:intron
CTAAGGTTACACAAACTTCT+GGG 0.424688 5.1:-61511100 MS.gene017439:CDS
AAGAAGAAAGGTTTGAGAAA+AGG 0.430002 5.1:-61511406 MS.gene017439:CDS
GTAGTCTTGTCACACTCTCT+TGG 0.452231 5.1:+61510684 None:intergenic
TTTGTGCATCACCAACATTT+GGG 0.457944 5.1:+61510658 None:intergenic
CATTTAGTTCCTAAACGAAC+AGG 0.459270 5.1:-61511316 MS.gene017439:intron
TCCCACCATGTCGTAGATGA+TGG 0.474554 5.1:+61510618 None:intergenic
AATCATATCAATTTCATCCT+CGG 0.486195 5.1:+61511123 None:intergenic
CTATGATTCTTCTTCAACCA+TGG 0.496021 5.1:+61510750 None:intergenic
GAAACTTTCTCTGTTGATTG+CGG 0.499376 5.1:+61511147 None:intergenic
GAGATTTGGGAGTGTAGACT+TGG 0.503080 5.1:+61510797 None:intergenic
CATACTCAGTGATTCCGATT+GGG 0.513340 5.1:-61510475 MS.gene017439:CDS
AAAAGGTGCATGGACATATG+AGG 0.529512 5.1:-61511389 MS.gene017439:CDS
CCATACTCAGTGATTCCGAT+TGG 0.544130 5.1:-61510476 MS.gene017439:CDS
AACTTTCTCTGTTGATTGCG+GGG 0.546763 5.1:+61511149 None:intergenic
GTGCATATGGAGAAGAAGAA+AGG 0.547938 5.1:-61511418 None:intergenic
AAAGGAATTGAAATCCCAAT+CGG 0.557492 5.1:+61510461 None:intergenic
GTGGGAGAGTTTGTTGAACA+TGG 0.564424 5.1:-61510601 MS.gene017439:CDS
TTGGGATTTCAATTCCTTTG+GGG 0.564675 5.1:-61510457 MS.gene017439:CDS
CCCACCATGTCGTAGATGAT+GGG 0.576749 5.1:+61510619 None:intergenic
TGTATTCACAAGTATGGTGA+AGG 0.587200 5.1:-61511346 MS.gene017439:CDS
CTTCTTCAAGTCATTCACCA+TGG 0.595797 5.1:-61510767 MS.gene017439:CDS
CAATCGGAATCACTGAGTAT+GGG 0.599036 5.1:+61510477 None:intergenic
AAGGTTTGAGAAAAGGTGCA+TGG 0.600200 5.1:-61511399 MS.gene017439:CDS
TGAGGAAGATAATCTACTCA+AGG 0.602062 5.1:-61511371 MS.gene017439:CDS
AAGACTACACTCCCAAATGT+TGG 0.603113 5.1:-61510669 MS.gene017439:CDS
ACATCATTAGCTGTCCTACC+CGG 0.608474 5.1:+61510951 None:intergenic
GTCGGAAAAGTTGTAGATTG+CGG 0.613773 5.1:-61511189 MS.gene017439:CDS
TTGCTGCAAGGCTTCCGGGT+AGG 0.615403 5.1:-61510965 MS.gene017439:intron
ATACAGGTTTGAATAGGTGT+CGG 0.617013 5.1:-61511207 MS.gene017439:intron
ACAACACTAGTAGCTTCAAG+TGG 0.627477 5.1:-61510720 MS.gene017439:CDS
TAAGGTTACACAAACTTCTG+GGG 0.633315 5.1:-61511099 MS.gene017439:CDS
ACCCATCATCTACGACATGG+TGG 0.641622 5.1:-61510620 MS.gene017439:CDS
GGTGATGCACAAACATGTGT+TGG 0.643933 5.1:-61510648 MS.gene017439:CDS
CCCATCATCTACGACATGGT+GGG 0.645185 5.1:-61510619 MS.gene017439:CDS
CAACTAATTAAAGACCCCAA+AGG 0.667420 5.1:+61510443 None:intergenic
GGAAAAGTTGTAGATTGCGG+TGG 0.681672 5.1:-61511186 MS.gene017439:CDS
ATGACCCATCATCTACGACA+TGG 0.683452 5.1:-61510623 MS.gene017439:CDS
CAACAGAGAAAGTTTCGCCG+AGG 0.708057 5.1:-61511140 MS.gene017439:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATATATTTAAGCA+TGG + chr5.1:61510602-61510621 None:intergenic 10.0%
!!! AAAATTTGTTACATATATAC+AGG - chr5.1:61510635-61510654 MS.gene017439:CDS 15.0%
!! ATACATATATTATACTCTCT+AGG + chr5.1:61510848-61510867 None:intergenic 20.0%
!! ATGAAATTGATATGATTCTA+AGG - chr5.1:61510741-61510760 MS.gene017439:CDS 20.0%
!!! CTATCAAGTTAATTTTGTTT+TGG - chr5.1:61510792-61510811 MS.gene017439:CDS 20.0%
! AAGAAGAATCAATGAGATTT+GGG + chr5.1:61511077-61511096 None:intergenic 25.0%
! AATCATATCAATTTCATCCT+CGG + chr5.1:61510738-61510757 None:intergenic 25.0%
! ACATATATACAGGTTTGAAT+AGG - chr5.1:61510645-61510664 MS.gene017439:CDS 25.0%
! CTAATGATGTGAAGAATTAT+TGG - chr5.1:61510920-61510939 MS.gene017439:CDS 25.0%
! CTTGCTCTTTATTACAAAAT+GGG - chr5.1:61511310-61511329 MS.gene017439:intron 25.0%
! TCTTGCTCTTTATTACAAAA+TGG - chr5.1:61511309-61511328 MS.gene017439:intron 25.0%
! TGTATCTATGTATGTATAGA+TGG - chr5.1:61510863-61510882 MS.gene017439:CDS 25.0%
!! CTATCAAGTTAAACTTCTTT+TGG - chr5.1:61510819-61510838 MS.gene017439:CDS 25.0%
!! TCTTCATTTTCTTCTTTTCT+TGG + chr5.1:61510973-61510992 None:intergenic 25.0%
!!! CAAAAGAAGTTTAACTTGAT+AGG + chr5.1:61510821-61510840 None:intergenic 25.0%
!!! CACTTTAGAATTTTCAAATG+TGG - chr5.1:61511338-61511357 MS.gene017439:CDS 25.0%
!!! GTGGAGGAATTTTTTAATAA+TGG - chr5.1:61511357-61511376 MS.gene017439:CDS 25.0%
!!! TTTAGAATTTTCAAATGTGG+AGG - chr5.1:61511341-61511360 MS.gene017439:CDS 25.0%
AAAGGAATTGAAATCCCAAT+CGG + chr5.1:61511400-61511419 None:intergenic 30.0%
AAGAAGAAAGGTTTGAGAAA+AGG - chr5.1:61510452-61510471 MS.gene017439:CDS 30.0%
ATTGGGATTTCAATTCCTTT+GGG - chr5.1:61511400-61511419 MS.gene017439:CDS 30.0%
GAAAGAAGCAATGAGAAAAT+TGG - chr5.1:61511285-61511304 MS.gene017439:intron 30.0%
GAAGAAGAATCAATGAGATT+TGG + chr5.1:61511078-61511097 None:intergenic 30.0%
AAGGCTTGTATTCACAAGTA+TGG - chr5.1:61510506-61510525 MS.gene017439:CDS 35.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5.1:61510519-61510538 MS.gene017439:CDS 35.0%
ATACACATACCTGTTCGTTT+AGG + chr5.1:61510554-61510573 None:intergenic 35.0%
ATACAGGTTTGAATAGGTGT+CGG - chr5.1:61510651-61510670 MS.gene017439:CDS 35.0%
CTAAGGTTACACAAACTTCT+GGG - chr5.1:61510758-61510777 MS.gene017439:CDS 35.0%
CTATGATTCTTCTTCAACCA+TGG + chr5.1:61511111-61511130 None:intergenic 35.0%
GATTGGGATTTCAATTCCTT+TGG - chr5.1:61511399-61511418 MS.gene017439:CDS 35.0%
TAAGGTTACACAAACTTCTG+GGG - chr5.1:61510759-61510778 MS.gene017439:CDS 35.0%
TGAGGAAGATAATCTACTCA+AGG - chr5.1:61510487-61510506 MS.gene017439:CDS 35.0%
TGTATTCACAAGTATGGTGA+AGG - chr5.1:61510512-61510531 MS.gene017439:CDS 35.0%
TTGGGATTTCAATTCCTTTG+GGG - chr5.1:61511401-61511420 MS.gene017439:CDS 35.0%
TTTGTGCATCACCAACATTT+GGG + chr5.1:61511203-61511222 None:intergenic 35.0%
! AAACTTTCTCTGTTGATTGC+GGG + chr5.1:61510713-61510732 None:intergenic 35.0%
! CATTTAGTTCCTAAACGAAC+AGG - chr5.1:61510542-61510561 MS.gene017439:CDS 35.0%
! GAAACTTTCTCTGTTGATTG+CGG + chr5.1:61510714-61510733 None:intergenic 35.0%
! TCTAAGGTTACACAAACTTC+TGG - chr5.1:61510757-61510776 MS.gene017439:CDS 35.0%
AAGACTACACTCCCAAATGT+TGG - chr5.1:61511189-61511208 MS.gene017439:CDS 40.0%
ACAACACTAGTAGCTTCAAG+TGG - chr5.1:61511138-61511157 MS.gene017439:CDS 40.0%
CAATCGGAATCACTGAGTAT+GGG + chr5.1:61511384-61511403 None:intergenic 40.0%
CATACTCAGTGATTCCGATT+GGG - chr5.1:61511383-61511402 MS.gene017439:CDS 40.0%
CTTCTTCAAGTCATTCACCA+TGG - chr5.1:61511091-61511110 MS.gene017439:intron 40.0%
CTTGAAGCTACTAGTGTTGT+TGG + chr5.1:61511138-61511157 None:intergenic 40.0%
GTAGACTTGGAAAAAGTTCG+AGG + chr5.1:61511051-61511070 None:intergenic 40.0%
GTCGGAAAAGTTGTAGATTG+CGG - chr5.1:61510669-61510688 MS.gene017439:CDS 40.0%
GTTTGTGCATCACCAACATT+TGG + chr5.1:61511204-61511223 None:intergenic 40.0%
! AAAAGGTGCATGGACATATG+AGG - chr5.1:61510469-61510488 MS.gene017439:CDS 40.0%
! AACTTTCTCTGTTGATTGCG+GGG + chr5.1:61510712-61510731 None:intergenic 40.0%
! AAGGTTTGAGAAAAGGTGCA+TGG - chr5.1:61510459-61510478 MS.gene017439:CDS 40.0%
ACATCATTAGCTGTCCTACC+CGG + chr5.1:61510910-61510929 None:intergenic 45.0%
ATGACCCATCATCTACGACA+TGG - chr5.1:61511235-61511254 MS.gene017439:intron 45.0%
ATTGATTGCTGCAAGGCTTC+CGG - chr5.1:61510888-61510907 MS.gene017439:CDS 45.0%
CCAATCGGAATCACTGAGTA+TGG + chr5.1:61511385-61511404 None:intergenic 45.0%
CCATACTCAGTGATTCCGAT+TGG - chr5.1:61511382-61511401 MS.gene017439:CDS 45.0%
GGAAAAGTTGTAGATTGCGG+TGG - chr5.1:61510672-61510691 MS.gene017439:CDS 45.0%
GGTGATGCACAAACATGTGT+TGG - chr5.1:61511210-61511229 MS.gene017439:intron 45.0%
TTGGAAAAAGTTCGAGGTCG+AGG + chr5.1:61511045-61511064 None:intergenic 45.0%
! GAGATTTGGGAGTGTAGACT+TGG + chr5.1:61511064-61511083 None:intergenic 45.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5.1:61510881-61510900 MS.gene017439:CDS 45.0%
!! GTAGTCTTGTCACACTCTCT+TGG + chr5.1:61511177-61511196 None:intergenic 45.0%
!! GTGGGAGAGTTTGTTGAACA+TGG - chr5.1:61511257-61511276 MS.gene017439:intron 45.0%
ACCCATCATCTACGACATGG+TGG - chr5.1:61511238-61511257 MS.gene017439:intron 50.0%
CAACAGAGAAAGTTTCGCCG+AGG - chr5.1:61510718-61510737 MS.gene017439:CDS 50.0%
CCCACCATGTCGTAGATGAT+GGG + chr5.1:61511242-61511261 None:intergenic 50.0%
CCCATCATCTACGACATGGT+GGG - chr5.1:61511239-61511258 MS.gene017439:intron 50.0%
TCCCACCATGTCGTAGATGA+TGG + chr5.1:61511243-61511262 None:intergenic 50.0%
TTGATTGCTGCAAGGCTTCC+GGG - chr5.1:61510889-61510908 MS.gene017439:CDS 50.0%
TTGCTGCAAGGCTTCCGGGT+AGG - chr5.1:61510893-61510912 MS.gene017439:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 61510446 61511434 61510446 ID=MS.gene017439
chr5.1 mRNA 61510446 61511434 61510446 ID=MS.gene017439.t1;Parent=MS.gene017439
chr5.1 exon 61511317 61511434 61511317 ID=MS.gene017439.t1.exon1;Parent=MS.gene017439.t1
chr5.1 CDS 61511317 61511434 61511317 ID=cds.MS.gene017439.t1;Parent=MS.gene017439.t1
chr5.1 exon 61511094 61511223 61511094 ID=MS.gene017439.t1.exon2;Parent=MS.gene017439.t1
chr5.1 CDS 61511094 61511223 61511094 ID=cds.MS.gene017439.t1;Parent=MS.gene017439.t1
chr5.1 exon 61510446 61510977 61510446 ID=MS.gene017439.t1.exon3;Parent=MS.gene017439.t1
chr5.1 CDS 61510446 61510977 61510446 ID=cds.MS.gene017439.t1;Parent=MS.gene017439.t1
Gene Sequence

>MS.gene017439

ATGGAGAAGAAGAAAGGTTTGAGAAAAGGTGCATGGACATATGAGGAAGATAATCTACTCAAGGCTTGTATTCACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTAAACGAACAGGTATGTGTATTTAGCTAGAAGTAACTCATGAGAAACCATGCTTAAATATATTATATAATATATAGTTTGTCAAAATTTGTTACATATATACAGGTTTGAATAGGTGTCGGAAAAGTTGTAGATTGCGGTGGTTGAATTATTTAAACCCCGCAATCAACAGAGAAAGTTTCGCCGAGGATGAAATTGATATGATTCTAAGGTTACACAAACTTCTGGGGAACAAGTAAGCTATCAAGTTAATTTTGTTTTGGTTACCTATCAAGTTAAACTTCTTTTGGTTACCTAGAGAGTATAATATATGTATCTATGTATGTATAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAATGATGTGAAGAATTATTGGCACACAAATCTGCGCAAAAAAGTGATTCCAAGAAAAGAAGAAAATGAAGAAAAAGAGAAATCTAAAGAAAGCATGATCAAATCTCATGAAGTTATCAAGCCTCGACCTCGAACTTTTTCCAAGTCTACACTCCCAAATCTCATTGATTCTTCTTCAAGTCATTCACCATGGTTGAAGAAGAATCATAGTTTTCCAACAACACTAGTAGCTTCAAGTGGAGATGTTAATATTCCAAGAGAGTGTGACAAGACTACACTCCCAAATGTTGGTGATGCACAAACATGTGTTGGCAATGACCCATCATCTACGACATGGTGGGAGAGTTTGTTGAACATGGATGAAGAAAGAAGCAATGAGAAAATTGGTTCTTGCTCTTTATTACAAAATGGGAATTTCACTTTAGAATTTTCAAATGTGGAGGAATTTTTTAATAATGGTCCCATACTCAGTGATTCCGATTGGGATTTCAATTCCTTTGGGGTCTTTAATTAG
Protein sequence

>MS.gene017439.t1

MEKKKGLRKGAWTYEEDNLLKACIHKYGEGKWHLVPKRTGLNRCRKSCRLRWLNYLNPAINRESFAEDEIDMILRLHKLLGNKLPGRTANDVKNYWHTNLRKKVIPRKEENEEKEKSKESMIKSHEVIKPRPRTFSKSTLPNLIDSSSSHSPWLKKNHSFPTTLVASSGDVNIPRECDKTTLPNVGDAQTCVGNDPSSTTWWESLLNMDEERSNEKIGSCSLLQNGNFTLEFSNVEEFFNNGPILSDSDWDFNSFGVFN