Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01744.t1 | XP_013462471.1 | 94.6 | 411 | 22 | 0 | 1 | 411 | 1 | 411 | 1.20E-224 | 788.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01744.t1 | Q9M0Y6 | 62.2 | 400 | 137 | 2 | 11 | 409 | 8 | 394 | 4.1e-138 | 492.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01744.t1 | A0A072V4C7 | 94.6 | 411 | 22 | 0 | 1 | 411 | 1 | 411 | 8.3e-225 | 788.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028282 | MS.gene01744 | PPI |
| MS.gene01744 | MS.gene35178 | PPI |
| MS.gene36509 | MS.gene01744 | PPI |
| MS.gene023190 | MS.gene01744 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01744.t1 | MTR_2g011680 | 94.647 | 411 | 22 | 0 | 1 | 411 | 1 | 411 | 0.0 | 811 |
| MS.gene01744.t1 | MTR_2g012510 | 33.842 | 393 | 208 | 16 | 44 | 405 | 86 | 457 | 1.20e-40 | 150 |
| MS.gene01744.t1 | MTR_8g464260 | 32.493 | 357 | 198 | 15 | 45 | 375 | 2 | 341 | 2.58e-39 | 145 |
| MS.gene01744.t1 | MTR_4g090525 | 28.928 | 401 | 224 | 15 | 37 | 405 | 70 | 441 | 1.62e-25 | 108 |
| MS.gene01744.t1 | MTR_4g094672 | 29.963 | 267 | 144 | 9 | 105 | 357 | 2 | 239 | 6.55e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01744.t1 | AT4G05090 | 62.250 | 400 | 137 | 2 | 11 | 409 | 8 | 394 | 1.24e-173 | 491 |
| MS.gene01744.t1 | AT4G05090 | 56.500 | 400 | 128 | 3 | 11 | 409 | 8 | 362 | 3.61e-153 | 437 |
| MS.gene01744.t1 | AT5G54390 | 35.279 | 377 | 194 | 16 | 52 | 402 | 9 | 361 | 4.90e-45 | 160 |
| MS.gene01744.t1 | AT5G63980 | 33.515 | 367 | 205 | 12 | 49 | 405 | 3 | 340 | 7.10e-43 | 154 |
| MS.gene01744.t1 | AT5G63990 | 32.884 | 371 | 205 | 14 | 49 | 408 | 3 | 340 | 2.15e-42 | 152 |
| MS.gene01744.t1 | AT5G64000 | 32.345 | 371 | 206 | 11 | 49 | 408 | 3 | 339 | 1.04e-41 | 150 |
| MS.gene01744.t1 | AT5G09290 | 31.099 | 373 | 200 | 13 | 49 | 408 | 3 | 331 | 1.52e-38 | 142 |
| MS.gene01744.t1 | AT5G63990 | 33.125 | 320 | 174 | 13 | 49 | 357 | 3 | 293 | 1.52e-35 | 133 |
| MS.gene01744.t1 | AT5G64000 | 31.173 | 324 | 180 | 10 | 96 | 408 | 5 | 296 | 1.23e-30 | 119 |
Find 110 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCAACCAAATTGTTATTT+TGG | 0.203955 | 2.4:+72155701 | MS.gene01744:CDS |
| GTCCACACACCAGCTGATTT+GGG | 0.241577 | 2.4:-72155552 | None:intergenic |
| ATGCTGCCAAAATAACAATT+TGG | 0.274202 | 2.4:-72155707 | None:intergenic |
| GGTCCACACACCAGCTGATT+TGG | 0.282185 | 2.4:-72155553 | None:intergenic |
| TGCTTGCAGTTTATGTGTTC+AGG | 0.293226 | 2.4:+72150791 | MS.gene01744:CDS |
| AGAGATTGTAATTGGTGTTA+TGG | 0.297902 | 2.4:+72155389 | MS.gene01744:CDS |
| GATCAAAGCCGGCCACATAT+TGG | 0.305709 | 2.4:+72151995 | MS.gene01744:CDS |
| GATTCCCATGATTGACTATC+TGG | 0.306948 | 2.4:-72155627 | None:intergenic |
| ATCATCATAATTCCTGATTC+AGG | 0.332419 | 2.4:-72155483 | None:intergenic |
| TTCCCTGTCCTCTTCCATCT+TGG | 0.333690 | 2.4:-72155454 | None:intergenic |
| GACAAGTCTTCTTGCCAATT+GGG | 0.335171 | 2.4:-72155417 | None:intergenic |
| TGTGGCAGACTTTGGTGTTC+AGG | 0.351262 | 2.4:+72151312 | MS.gene01744:CDS |
| GTTGAAGGAGAGATTGTAAT+TGG | 0.352089 | 2.4:+72155381 | MS.gene01744:CDS |
| GTTCAGGCTCTCATAAGTTT+AGG | 0.363263 | 2.4:+72151328 | MS.gene01744:CDS |
| GAGATTGTAATTGGTGTTAT+GGG | 0.367377 | 2.4:+72155390 | MS.gene01744:CDS |
| AGACAAGTCTTCTTGCCAAT+TGG | 0.375334 | 2.4:-72155418 | None:intergenic |
| TCGGCCACCAATGGGATAGA+AGG | 0.389586 | 2.4:-72151823 | None:intergenic |
| TGGTTGCTCCCTACATCATT+TGG | 0.394740 | 2.4:-72155687 | None:intergenic |
| ATCAAAGCCGGCCACATATT+GGG | 0.397697 | 2.4:+72151996 | MS.gene01744:CDS |
| AATCCACGTGTGCCATCAAT+TGG | 0.405595 | 2.4:-72154808 | None:intergenic |
| CGGAGGATCATATTCCCTTC+AGG | 0.409595 | 2.4:+72158133 | MS.gene01744:CDS |
| AGGGAAGCTCTTCCTGAATC+AGG | 0.418183 | 2.4:+72155471 | MS.gene01744:CDS |
| ATTATGATGATTGCTCATAA+AGG | 0.420141 | 2.4:+72155495 | MS.gene01744:CDS |
| GCATTAAATATAGAAGATAA+TGG | 0.431371 | 2.4:-72155654 | None:intergenic |
| TGCCGCCGCCGTCAGAAAAT+CGG | 0.433921 | 2.4:-72150561 | None:intergenic |
| GGTTTGGCTCTCATGGTTGA+AGG | 0.441562 | 2.4:+72155366 | MS.gene01744:CDS |
| TTCTATCCCATTGGTGGCCG+AGG | 0.445885 | 2.4:+72151825 | MS.gene01744:CDS |
| TTTCTGACGGCGGCGGCACT+CGG | 0.448923 | 2.4:+72150566 | MS.gene01744:CDS |
| CCAAAGTCTGCCACAGTCAC+TGG | 0.451305 | 2.4:-72151304 | None:intergenic |
| CTTGCGGTCAAGAAACTTAG+TGG | 0.452261 | 2.4:+72151861 | MS.gene01744:CDS |
| GGACCAGATGTGTTGTTGAT+AGG | 0.452319 | 2.4:+72155571 | MS.gene01744:CDS |
| CCAGTGACTGTGGCAGACTT+TGG | 0.453128 | 2.4:+72151304 | MS.gene01744:CDS |
| GTTGTTCCCTTCTATCCCAT+TGG | 0.458469 | 2.4:+72151816 | MS.gene01744:CDS |
| AAGTATTTGATGGTGGCATC+AGG | 0.465834 | 2.4:+72156669 | MS.gene01744:CDS |
| GTCCTCTTCCATCTTGGCAG+AGG | 0.466661 | 2.4:-72155448 | None:intergenic |
| ATAGGTGGGTTTGGCTCTCA+TGG | 0.470703 | 2.4:+72155359 | MS.gene01744:intron |
| TAGTTTATGCAAGTATTTGA+TGG | 0.470854 | 2.4:+72156659 | MS.gene01744:intron |
| TCATCTTTATTCTCCACTGA+TGG | 0.471262 | 2.4:+72151253 | MS.gene01744:CDS |
| CAGGTGCTTGATCCAATTGA+TGG | 0.473698 | 2.4:+72154796 | MS.gene01744:intron |
| GAACCTTACGTTGAAGCGTC+GGG | 0.482739 | 2.4:-72150605 | None:intergenic |
| ATGATTGCTCATAAAGGCTA+TGG | 0.493868 | 2.4:+72155501 | MS.gene01744:CDS |
| GAATCCTCCTCGGCCACCAA+TGG | 0.495135 | 2.4:-72151832 | None:intergenic |
| AAACCTATCAACAACACATC+TGG | 0.496603 | 2.4:-72155574 | None:intergenic |
| CTCATAAAGGCTATGGAACA+TGG | 0.499190 | 2.4:+72155508 | MS.gene01744:CDS |
| GTACTCAAAGCAATTGATAG+AGG | 0.500417 | 2.4:+72151949 | MS.gene01744:CDS |
| CTGCCAAGATGGAAGAGGAC+AGG | 0.501643 | 2.4:+72155451 | MS.gene01744:CDS |
| ACAAGCAATCCAAATGATGT+AGG | 0.502991 | 2.4:+72155678 | MS.gene01744:CDS |
| GTTCCCTTCTATCCCATTGG+TGG | 0.505293 | 2.4:+72151819 | MS.gene01744:CDS |
| GTGTTATGGGCTGCCCCAAT+TGG | 0.507718 | 2.4:+72155403 | MS.gene01744:CDS |
| CTGAAGGGAATATGATCCTC+CGG | 0.507728 | 2.4:-72158132 | None:intergenic |
| GTATTCCAGATAGTCAATCA+TGG | 0.509269 | 2.4:+72155622 | MS.gene01744:CDS |
| AATCCTCCTCGGCCACCAAT+GGG | 0.509660 | 2.4:-72151831 | None:intergenic |
| TTTATTCTCCACTGATGGGA+AGG | 0.518807 | 2.4:+72151258 | MS.gene01744:CDS |
| CTGCTGAAGCTAGCTCCACT+TGG | 0.521128 | 2.4:+72151905 | MS.gene01744:CDS |
| ACGCAGAGCTCCGATGGCAT+TGG | 0.523733 | 2.4:+72150501 | None:intergenic |
| AGCTCCGATGGCATTGGCGA+TGG | 0.525036 | 2.4:+72150507 | None:intergenic |
| AGGAGGATTCTGCTTTCTTG+CGG | 0.529637 | 2.4:+72151845 | MS.gene01744:CDS |
| CAGGCTTGGGACCATGCTGT+TGG | 0.529955 | 2.4:+72156811 | MS.gene01744:intron |
| ATCAGGTAACTGACTGGGAA+GGG | 0.532894 | 2.4:+72158077 | MS.gene01744:intron |
| TTCAAGAACCTTCCCATCAG+TGG | 0.533433 | 2.4:-72151266 | None:intergenic |
| CATCTTTATTCTCCACTGAT+GGG | 0.546711 | 2.4:+72151254 | MS.gene01744:CDS |
| CATTCATGAGGCAGGTGGAA+AGG | 0.553260 | 2.4:+72156843 | MS.gene01744:CDS |
| TTGCTTCGGAAATGGAAGGT+TGG | 0.554636 | 2.4:-72150718 | None:intergenic |
| GGGAATATGATCCTCCGGCT+AGG | 0.556143 | 2.4:-72158127 | None:intergenic |
| TATTCCAGATAGTCAATCAT+GGG | 0.557933 | 2.4:+72155623 | MS.gene01744:CDS |
| AATTTGATCAGGTAACTGAC+TGG | 0.558262 | 2.4:+72158071 | MS.gene01744:intron |
| TAATATGCCCACCCAATATG+TGG | 0.559681 | 2.4:-72152007 | None:intergenic |
| AATAGCAACCCCAAATCAGC+TGG | 0.559980 | 2.4:+72155543 | MS.gene01744:CDS |
| TCCACACACCAGCTGATTTG+GGG | 0.562347 | 2.4:-72155551 | None:intergenic |
| ACACCCGACGCTTCAACGTA+AGG | 0.564089 | 2.4:+72150602 | MS.gene01744:CDS |
| TACTCAAAGCAATTGATAGA+GGG | 0.567364 | 2.4:+72151950 | MS.gene01744:CDS |
| AAAAGAGACGACTACTATCA+AGG | 0.569178 | 2.4:+72156719 | MS.gene01744:CDS |
| AGCAGTGTGAACAACATCAA+TGG | 0.573505 | 2.4:-72150772 | None:intergenic |
| CAAGCAATCCAAATGATGTA+GGG | 0.573943 | 2.4:+72155679 | MS.gene01744:CDS |
| ATATCCATCGCCAATGCCAT+CGG | 0.574061 | 2.4:-72150511 | None:intergenic |
| ATCCTCTGCCAAGATGGAAG+AGG | 0.582112 | 2.4:+72155446 | MS.gene01744:CDS |
| TGCCAAGATGGAAGAGGACA+GGG | 0.587008 | 2.4:+72155452 | MS.gene01744:CDS |
| ATGATATGCATTCATGAGGC+AGG | 0.589800 | 2.4:+72156835 | MS.gene01744:CDS |
| AGAACCTTACGTTGAAGCGT+CGG | 0.590075 | 2.4:-72150606 | None:intergenic |
| ATGCCCACCCAATATGTGGC+CGG | 0.590199 | 2.4:-72152003 | None:intergenic |
| ACAAGTCTTCTTGCCAATTG+GGG | 0.592329 | 2.4:-72155416 | None:intergenic |
| TATCCCATTGGTGGCCGAGG+AGG | 0.593835 | 2.4:+72151828 | MS.gene01744:CDS |
| ACCCCAAATCAGCTGGTGTG+TGG | 0.594473 | 2.4:+72155550 | MS.gene01744:CDS |
| CGGCCACCAATGGGATAGAA+GGG | 0.596026 | 2.4:-72151822 | None:intergenic |
| TTGCGGTCAAGAAACTTAGT+GGG | 0.597895 | 2.4:+72151862 | MS.gene01744:CDS |
| TTTATGCAAGTATTTGATGG+TGG | 0.599958 | 2.4:+72156662 | MS.gene01744:CDS |
| GGTGGCGTCCTTGTTACTAA+CGG | 0.601548 | 2.4:+72158154 | MS.gene01744:CDS |
| GTAACAAGGACGCCACCTGA+AGG | 0.602966 | 2.4:-72158148 | None:intergenic |
| GATCCAATTGATGGCACACG+TGG | 0.605621 | 2.4:+72154805 | MS.gene01744:CDS |
| AGATAACAAAGCGTTATATG+TGG | 0.605754 | 2.4:+72154837 | MS.gene01744:CDS |
| GATCAGGTAACTGACTGGGA+AGG | 0.607305 | 2.4:+72158076 | MS.gene01744:intron |
| TTGCCGCAGATCAACCTAGC+CGG | 0.608919 | 2.4:+72158113 | MS.gene01744:CDS |
| TAACAAGGACGCCACCTGAA+GGG | 0.611253 | 2.4:-72158147 | None:intergenic |
| GTAAATTGCCGTTAGTAACA+AGG | 0.612669 | 2.4:-72158162 | None:intergenic |
| TGCATATCATGCCAACAGCA+TGG | 0.616442 | 2.4:-72156822 | None:intergenic |
| ATTTGATCAGGTAACTGACT+GGG | 0.622347 | 2.4:+72158072 | MS.gene01744:intron |
| CAAGAAAGCAGAATCCTCCT+CGG | 0.629801 | 2.4:-72151842 | None:intergenic |
| TGTTGTTGATAGGTTTGACA+TGG | 0.638659 | 2.4:+72155581 | MS.gene01744:CDS |
| TGATCAGACTCCAGTGACTG+TGG | 0.643293 | 2.4:+72151294 | MS.gene01744:CDS |
| CTCAAAGCAATTGATAGAGG+GGG | 0.649113 | 2.4:+72151952 | MS.gene01744:CDS |
| AGGATCATATTCCCTTCAGG+TGG | 0.653889 | 2.4:+72158136 | MS.gene01744:CDS |
| ATATGCATTCATGAGGCAGG+TGG | 0.655145 | 2.4:+72156838 | MS.gene01744:CDS |
| CGGTGGAGAGATGAGAAGAA+CGG | 0.656261 | 2.4:-72150537 | None:intergenic |
| CCGCAGATCAACCTAGCCGG+AGG | 0.666782 | 2.4:+72158116 | MS.gene01744:CDS |
| ACTCAAAGCAATTGATAGAG+GGG | 0.668266 | 2.4:+72151951 | MS.gene01744:CDS |
| GCCGCCGTCAGAAAATCGGA+CGG | 0.685895 | 2.4:-72150557 | None:intergenic |
| GCCGTCAGAAAATCGGACGG+TGG | 0.690905 | 2.4:-72150554 | None:intergenic |
| TGGAGAGATGAGAAGAACGG+AGG | 0.713156 | 2.4:-72150534 | None:intergenic |
| TGGCATGATATGCATTCATG+AGG | 0.720942 | 2.4:+72156831 | MS.gene01744:CDS |
| CCTCCGGCTAGGTTGATCTG+CGG | 0.736035 | 2.4:-72158116 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 72150514 | 72158228 | 72150514 | ID=MS.gene01744 |
| chr2.4 | mRNA | 72150514 | 72158228 | 72150514 | ID=MS.gene01744.t1;Parent=MS.gene01744 |
| chr2.4 | exon | 72150514 | 72150623 | 72150514 | ID=MS.gene01744.t1.exon1;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72150514 | 72150623 | 72150514 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72150716 | 72150812 | 72150716 | ID=MS.gene01744.t1.exon2;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72150716 | 72150812 | 72150716 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72151247 | 72151349 | 72151247 | ID=MS.gene01744.t1.exon3;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72151247 | 72151349 | 72151247 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72151806 | 72152017 | 72151806 | ID=MS.gene01744.t1.exon4;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72151806 | 72152017 | 72151806 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72154799 | 72154858 | 72154799 | ID=MS.gene01744.t1.exon5;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72154799 | 72154858 | 72154799 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72155363 | 72155739 | 72155363 | ID=MS.gene01744.t1.exon6;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72155363 | 72155739 | 72155363 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72156662 | 72156740 | 72156662 | ID=MS.gene01744.t1.exon7;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72156662 | 72156740 | 72156662 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72156814 | 72156864 | 72156814 | ID=MS.gene01744.t1.exon8;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72156814 | 72156864 | 72156814 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| chr2.4 | exon | 72158082 | 72158228 | 72158082 | ID=MS.gene01744.t1.exon9;Parent=MS.gene01744.t1 |
| chr2.4 | CDS | 72158082 | 72158228 | 72158082 | ID=cds.MS.gene01744.t1;Parent=MS.gene01744.t1 |
| Gene Sequence |
| Protein sequence |