Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01763.t1 | XP_003593454.1 | 96.7 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 4.10E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01763.t1 | Q53FA7 | 40.6 | 310 | 177 | 5 | 1 | 304 | 1 | 309 | 6.4e-57 | 222.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01763.t1 | G7ILE5 | 96.7 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 3.0e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06555 | MS.gene01763 | PPI |
| MS.gene013451 | MS.gene01763 | PPI |
| MS.gene06797 | MS.gene01763 | PPI |
| MS.gene049424 | MS.gene01763 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01763.t1 | MTR_4g050760 | 96.721 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 0.0 | 600 |
| MS.gene01763.t1 | MTR_2g012380 | 96.721 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 0.0 | 600 |
| MS.gene01763.t1 | MTR_2g012420 | 92.459 | 305 | 23 | 0 | 1 | 305 | 1 | 305 | 0.0 | 570 |
| MS.gene01763.t1 | MTR_2g012380 | 96.154 | 260 | 10 | 0 | 1 | 260 | 1 | 260 | 0.0 | 509 |
| MS.gene01763.t1 | MTR_4g050710 | 95.111 | 225 | 11 | 0 | 81 | 305 | 4 | 228 | 8.06e-155 | 434 |
| MS.gene01763.t1 | MTR_2g012420 | 95.111 | 225 | 11 | 0 | 81 | 305 | 10 | 234 | 2.57e-154 | 433 |
| MS.gene01763.t1 | MTR_2g012420 | 97.110 | 173 | 5 | 0 | 133 | 305 | 1 | 173 | 2.41e-119 | 342 |
| MS.gene01763.t1 | MTR_4g029500 | 32.899 | 307 | 200 | 4 | 1 | 305 | 52 | 354 | 9.64e-37 | 135 |
| MS.gene01763.t1 | MTR_2g012390 | 87.302 | 63 | 8 | 0 | 82 | 144 | 5 | 67 | 1.43e-30 | 111 |
| MS.gene01763.t1 | MTR_3g093620 | 31.271 | 291 | 192 | 3 | 19 | 306 | 33 | 318 | 8.13e-25 | 103 |
| MS.gene01763.t1 | MTR_4g086400 | 31.222 | 221 | 140 | 6 | 26 | 239 | 175 | 390 | 2.31e-22 | 97.8 |
| MS.gene01763.t1 | MTR_4g086400 | 31.222 | 221 | 140 | 6 | 26 | 239 | 315 | 530 | 4.12e-22 | 97.4 |
| MS.gene01763.t1 | MTR_8g064610 | 30.421 | 309 | 169 | 12 | 1 | 296 | 76 | 351 | 5.81e-22 | 95.9 |
| MS.gene01763.t1 | MTR_4g032995 | 28.254 | 315 | 186 | 12 | 10 | 305 | 16 | 309 | 6.43e-21 | 92.0 |
| MS.gene01763.t1 | MTR_4g086410 | 29.464 | 224 | 140 | 6 | 26 | 239 | 315 | 530 | 1.28e-20 | 93.2 |
| MS.gene01763.t1 | MTR_4g036310 | 33.188 | 229 | 137 | 9 | 10 | 225 | 16 | 241 | 3.59e-20 | 89.7 |
| MS.gene01763.t1 | MTR_4g033205 | 27.937 | 315 | 187 | 12 | 10 | 305 | 16 | 309 | 1.01e-19 | 88.6 |
| MS.gene01763.t1 | MTR_7g055743 | 26.403 | 303 | 199 | 9 | 14 | 305 | 60 | 349 | 5.15e-18 | 84.3 |
| MS.gene01763.t1 | MTR_8g035880 | 32.727 | 220 | 127 | 6 | 10 | 217 | 13 | 223 | 1.25e-17 | 82.8 |
| MS.gene01763.t1 | MTR_8g035630 | 32.727 | 220 | 127 | 6 | 10 | 217 | 13 | 223 | 1.88e-17 | 82.4 |
| MS.gene01763.t1 | MTR_2g078520 | 29.060 | 234 | 143 | 6 | 2 | 223 | 27 | 249 | 2.49e-15 | 76.3 |
| MS.gene01763.t1 | MTR_6g012170 | 30.992 | 242 | 136 | 9 | 13 | 237 | 24 | 251 | 6.70e-15 | 74.7 |
| MS.gene01763.t1 | MTR_6g012160 | 30.769 | 234 | 132 | 8 | 20 | 237 | 32 | 251 | 2.54e-13 | 70.1 |
| MS.gene01763.t1 | MTR_7g034395 | 28.947 | 304 | 155 | 12 | 23 | 305 | 32 | 295 | 6.54e-13 | 68.9 |
| MS.gene01763.t1 | MTR_4g036260 | 25.843 | 267 | 172 | 9 | 50 | 305 | 37 | 288 | 7.10e-13 | 68.6 |
| MS.gene01763.t1 | MTR_8g095220 | 24.926 | 337 | 189 | 11 | 1 | 278 | 54 | 385 | 6.76e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01763.t1 | AT4G21580 | 73.770 | 305 | 80 | 0 | 1 | 305 | 1 | 305 | 2.90e-164 | 461 |
| MS.gene01763.t1 | AT4G21580 | 72.131 | 305 | 79 | 1 | 1 | 305 | 1 | 299 | 8.31e-158 | 444 |
| MS.gene01763.t1 | AT4G21580 | 72.059 | 272 | 76 | 0 | 34 | 305 | 1 | 272 | 4.28e-142 | 403 |
| MS.gene01763.t1 | AT5G61510 | 31.270 | 307 | 203 | 4 | 1 | 304 | 84 | 385 | 2.50e-34 | 130 |
| MS.gene01763.t1 | AT5G61510 | 30.952 | 294 | 195 | 4 | 14 | 304 | 40 | 328 | 5.06e-31 | 120 |
| MS.gene01763.t1 | AT3G56460 | 28.344 | 314 | 200 | 7 | 7 | 305 | 15 | 318 | 1.49e-23 | 99.8 |
| MS.gene01763.t1 | AT1G23740 | 31.447 | 318 | 170 | 13 | 1 | 303 | 78 | 362 | 2.83e-23 | 99.4 |
| MS.gene01763.t1 | AT1G49670 | 30.876 | 217 | 138 | 6 | 28 | 239 | 317 | 526 | 3.72e-21 | 94.7 |
| MS.gene01763.t1 | AT4G13010 | 28.896 | 308 | 193 | 9 | 10 | 305 | 16 | 309 | 1.86e-19 | 87.8 |
| MS.gene01763.t1 | AT1G49670 | 28.692 | 237 | 140 | 6 | 28 | 239 | 317 | 549 | 1.91e-19 | 89.7 |
| MS.gene01763.t1 | AT3G15090 | 27.273 | 330 | 196 | 13 | 2 | 304 | 33 | 345 | 2.29e-15 | 76.6 |
| MS.gene01763.t1 | AT5G63620 | 25.369 | 339 | 185 | 12 | 1 | 278 | 56 | 387 | 5.01e-14 | 72.8 |
| MS.gene01763.t1 | AT5G63620 | 25.074 | 339 | 186 | 12 | 1 | 278 | 56 | 387 | 1.07e-13 | 72.0 |
Find 83 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGATCTACGTGCTTTATT+TGG | 0.236190 | 2.3:+71673825 | MS.gene01763:CDS |
| ATGAGTACTTCATTGTCTTT+AGG | 0.244727 | 2.3:-71672158 | None:intergenic |
| ACCTTTCCTTCTGCAATTGC+AGG | 0.276088 | 2.3:-71680649 | None:intergenic |
| AATCATACAACTTACCAATA+AGG | 0.288330 | 2.3:-71673037 | None:intergenic |
| TATGACAAGTCGGCTATCTA+AGG | 0.294122 | 2.3:+71673008 | MS.gene01763:CDS |
| GAAGCTGGCTCACCGGCTTA+TGG | 0.331771 | 2.3:+71680706 | MS.gene01763:CDS |
| GAACGGTATCGGCACTGTTA+AGG | 0.335381 | 2.3:-71672199 | None:intergenic |
| TTCATCAATTCTCAGGTTCA+TGG | 0.344560 | 2.3:+71673230 | MS.gene01763:intron |
| TGATGTTATTCTTGATTGTA+TGG | 0.350274 | 2.3:+71673713 | MS.gene01763:CDS |
| TCTTGAAGTTGTAGAACTTC+AGG | 0.359966 | 2.3:-71672119 | None:intergenic |
| AACGGTATCGGCACTGTTAA+GGG | 0.374677 | 2.3:-71672198 | None:intergenic |
| TATCCAGGTCTTGAATGTTC+TGG | 0.375437 | 2.3:+71672263 | MS.gene01763:CDS |
| ATCAAGATTTCTTTGATAGT+AGG | 0.380590 | 2.3:-71673742 | None:intergenic |
| AACGTTTCCAACTGGAAAAT+CGG | 0.390954 | 2.3:+71672308 | MS.gene01763:CDS |
| ACTTCATTGTCTTTAGGTTG+AGG | 0.404599 | 2.3:-71672152 | None:intergenic |
| AGAGAAATCCCGGGTGGAAC+CGG | 0.412584 | 2.3:-71672931 | None:intergenic |
| CAGGTATGTGCTCTTCTAGC+TGG | 0.420815 | 2.3:+71672862 | MS.gene01763:intron |
| TTGGTATAAACGTTTCCAAC+TGG | 0.432549 | 2.3:+71672300 | MS.gene01763:CDS |
| CTTCATTGTCTTTAGGTTGA+GGG | 0.442897 | 2.3:-71672151 | None:intergenic |
| CTGAAGTAGAGAAGAATGTT+TGG | 0.443029 | 2.3:+71680626 | MS.gene01763:CDS |
| GCCTTTCCTTTGAACGGTAT+CGG | 0.446179 | 2.3:-71672210 | None:intergenic |
| TCATTCCCTCTTTCTGAAGC+TGG | 0.449900 | 2.3:+71680691 | MS.gene01763:CDS |
| GGGCTTGCACCTTGAGGGAT+AGG | 0.452215 | 2.3:-71672239 | None:intergenic |
| ATGGAAAGCAGTCAGCATAT+TGG | 0.471076 | 2.3:+71680725 | MS.gene01763:CDS |
| TTACAAAACAGAGGACTTTG+TGG | 0.473910 | 2.3:+71673517 | MS.gene01763:CDS |
| AGAACATTCAAGACCTGGAT+AGG | 0.477853 | 2.3:-71672261 | None:intergenic |
| TGCATCCTTCAGAGAAATCC+CGG | 0.479401 | 2.3:-71672941 | None:intergenic |
| CAACTGGAAAATCGGTGATC+AGG | 0.480863 | 2.3:+71672316 | MS.gene01763:CDS |
| GCAAGGGTAAAGGAAGAAAC+TGG | 0.482737 | 2.3:+71673539 | MS.gene01763:CDS |
| GGACTTTGTGGCAAGGGTAA+AGG | 0.486871 | 2.3:+71673529 | MS.gene01763:CDS |
| GATAGGGGCTTGCACCTTGA+GGG | 0.487874 | 2.3:-71672244 | None:intergenic |
| TCAAGAGTATTTGTTACTGC+AGG | 0.488629 | 2.3:+71673305 | MS.gene01763:CDS |
| CATGGAGGTTCAAGTGGAAT+CGG | 0.496039 | 2.3:+71673248 | MS.gene01763:CDS |
| ATCGGCACTGTTAAGGGCAG+TGG | 0.498747 | 2.3:-71672192 | None:intergenic |
| ATGACAAGTCGGCTATCTAA+GGG | 0.502507 | 2.3:+71673009 | MS.gene01763:CDS |
| GTAAAAGCCTTTCCTTTGAA+CGG | 0.516093 | 2.3:-71672216 | None:intergenic |
| TCCACCCGGGATTTCTCTGA+AGG | 0.519437 | 2.3:+71672936 | MS.gene01763:CDS |
| GCCTGCAATTGCAGAAGGAA+AGG | 0.519570 | 2.3:+71680648 | MS.gene01763:CDS |
| GAACATTCAAGACCTGGATA+GGG | 0.521615 | 2.3:-71672260 | None:intergenic |
| GGGAATGATTTGTAAACCAC+AGG | 0.522474 | 2.3:-71680676 | None:intergenic |
| CACTGTTAAGGGCAGTGGCA+TGG | 0.523420 | 2.3:-71672187 | None:intergenic |
| GGCAAGCGTCTCACTGTACA+AGG | 0.526294 | 2.3:+71673846 | MS.gene01763:CDS |
| CAAGGTGCAAGCCCCTATCC+AGG | 0.528336 | 2.3:+71672248 | MS.gene01763:CDS |
| TGAAGTTCTACAACTTCAAG+AGG | 0.532066 | 2.3:+71672121 | MS.gene01763:CDS |
| GATGTTATTCTTGATTGTAT+GGG | 0.533185 | 2.3:+71673714 | MS.gene01763:CDS |
| CAGGTTCATGGAGGTTCAAG+TGG | 0.534759 | 2.3:+71673242 | MS.gene01763:intron |
| GGCTTGCACCTTGAGGGATA+GGG | 0.540973 | 2.3:-71672238 | None:intergenic |
| GGATAGGGGCTTGCACCTTG+AGG | 0.546687 | 2.3:-71672245 | None:intergenic |
| GGTGAGCCAGCTTCAGAAAG+AGG | 0.548970 | 2.3:-71680697 | None:intergenic |
| TCTGGAACTATTGAATCCGT+TGG | 0.554523 | 2.3:+71672281 | MS.gene01763:CDS |
| GCTGACTGCTTTCCATAAGC+CGG | 0.555663 | 2.3:-71680718 | None:intergenic |
| TGTGCTCTTCTAGCTGGAGG+TGG | 0.560275 | 2.3:+71672868 | MS.gene01763:CDS |
| TCTTTCTGAAGCTGGCTCAC+CGG | 0.561313 | 2.3:+71680699 | MS.gene01763:CDS |
| AAGGAAGAAACTGGCGGACA+AGG | 0.566694 | 2.3:+71673548 | MS.gene01763:CDS |
| GTTTGGCCTGCAATTGCAGA+AGG | 0.566773 | 2.3:+71680643 | MS.gene01763:CDS |
| GCCGATACCGTTCAAAGGAA+AGG | 0.568367 | 2.3:+71672209 | MS.gene01763:CDS |
| AACAGAGGACTTTGTGGCAA+GGG | 0.571801 | 2.3:+71673523 | MS.gene01763:CDS |
| TGGAAAGATATTGCTTGTTG+TGG | 0.579900 | 2.3:+71680745 | MS.gene01763:CDS |
| GTTGGAAACGTTTATACCAA+CGG | 0.581226 | 2.3:-71672297 | None:intergenic |
| GTATGTGCTCTTCTAGCTGG+AGG | 0.586099 | 2.3:+71672865 | MS.gene01763:CDS |
| TGTAGAACTTCAGGTCCACC+TGG | 0.592318 | 2.3:-71672110 | None:intergenic |
| GTGAGCCAGCTTCAGAAAGA+GGG | 0.601513 | 2.3:-71680696 | None:intergenic |
| AACATTCAAGACCTGGATAG+GGG | 0.603099 | 2.3:-71672259 | None:intergenic |
| AAGAGTATTGGAGCTGATGT+TGG | 0.603468 | 2.3:+71673488 | MS.gene01763:CDS |
| TAACAAATACTCTTGATCCT+CGG | 0.609699 | 2.3:-71673298 | None:intergenic |
| GTTCCAGAACATTCAAGACC+TGG | 0.611446 | 2.3:-71672266 | None:intergenic |
| AGAAGGAAAGGTTAAGCCTG+TGG | 0.612996 | 2.3:+71680660 | MS.gene01763:CDS |
| ACAGTGCCGATACCGTTCAA+AGG | 0.616788 | 2.3:+71672204 | MS.gene01763:CDS |
| TTTATTATCGGCTTTCAAGG+GGG | 0.643203 | 2.3:+71673789 | MS.gene01763:CDS |
| CATTGATCAAGTATTTACCA+CGG | 0.644635 | 2.3:-71680776 | None:intergenic |
| GACAAGTCGGCTATCTAAGG+GGG | 0.645721 | 2.3:+71673011 | MS.gene01763:CDS |
| GCATCCTTCAGAGAAATCCC+GGG | 0.646597 | 2.3:-71672940 | None:intergenic |
| ATCAATTCTCAGGTTCATGG+AGG | 0.649634 | 2.3:+71673233 | MS.gene01763:intron |
| AAACAGAGGACTTTGTGGCA+AGG | 0.650379 | 2.3:+71673522 | MS.gene01763:CDS |
| GCAGTTGTAATTACAACACC+AGG | 0.653000 | 2.3:+71672092 | MS.gene01763:CDS |
| TGACAAGTCGGCTATCTAAG+GGG | 0.684380 | 2.3:+71673010 | MS.gene01763:CDS |
| TCCTTCAGAGAAATCCCGGG+TGG | 0.700414 | 2.3:-71672937 | None:intergenic |
| CTGAGGTTGCATGTACTGTG+TGG | 0.713501 | 2.3:+71672974 | MS.gene01763:CDS |
| TGGTATCAATTACAAAACAG+AGG | 0.714141 | 2.3:+71673508 | MS.gene01763:CDS |
| ATTCAGATAGCTAAGTACCG+AGG | 0.723680 | 2.3:+71673281 | MS.gene01763:CDS |
| GTTGTAATTACAACACCAGG+TGG | 0.740223 | 2.3:+71672095 | MS.gene01763:CDS |
| AGGGTAAAGGAAGAAACTGG+CGG | 0.742355 | 2.3:+71673542 | MS.gene01763:CDS |
| TTGTTGTGGCATGAAAACCG+TGG | 0.837034 | 2.3:+71680759 | MS.gene01763:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 71672086 | 71680792 | 71672086 | ID=MS.gene01763 |
| chr2.3 | mRNA | 71672086 | 71680792 | 71672086 | ID=MS.gene01763.t1;Parent=MS.gene01763 |
| chr2.3 | exon | 71672086 | 71672337 | 71672086 | ID=MS.gene01763.t1.exon1;Parent=MS.gene01763.t1 |
| chr2.3 | CDS | 71672086 | 71672337 | 71672086 | ID=cds.MS.gene01763.t1;Parent=MS.gene01763.t1 |
| chr2.3 | exon | 71672865 | 71673044 | 71672865 | ID=MS.gene01763.t1.exon2;Parent=MS.gene01763.t1 |
| chr2.3 | CDS | 71672865 | 71673044 | 71672865 | ID=cds.MS.gene01763.t1;Parent=MS.gene01763.t1 |
| chr2.3 | exon | 71673245 | 71673326 | 71673245 | ID=MS.gene01763.t1.exon3;Parent=MS.gene01763.t1 |
| chr2.3 | CDS | 71673245 | 71673326 | 71673245 | ID=cds.MS.gene01763.t1;Parent=MS.gene01763.t1 |
| chr2.3 | exon | 71673462 | 71673569 | 71673462 | ID=MS.gene01763.t1.exon4;Parent=MS.gene01763.t1 |
| chr2.3 | CDS | 71673462 | 71673569 | 71673462 | ID=cds.MS.gene01763.t1;Parent=MS.gene01763.t1 |
| chr2.3 | exon | 71673709 | 71673867 | 71673709 | ID=MS.gene01763.t1.exon5;Parent=MS.gene01763.t1 |
| chr2.3 | CDS | 71673709 | 71673867 | 71673709 | ID=cds.MS.gene01763.t1;Parent=MS.gene01763.t1 |
| chr2.3 | exon | 71680578 | 71680792 | 71680578 | ID=MS.gene01763.t1.exon6;Parent=MS.gene01763.t1 |
| chr2.3 | CDS | 71680578 | 71680792 | 71680578 | ID=cds.MS.gene01763.t1;Parent=MS.gene01763.t1 |
| Gene Sequence |
| Protein sequence |