AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017783


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017783.t1 MTR_7g490330 79.819 332 60 2 1 332 1 325 0.0 541
MS.gene017783.t1 MTR_7g090300 71.351 370 67 2 1 332 1 369 0.0 523
MS.gene017783.t1 MTR_7g490350 71.081 370 68 2 1 332 1 369 0.0 522
MS.gene017783.t1 MTR_5g091980 77.711 332 65 2 1 332 1 323 0.0 514
MS.gene017783.t1 MTR_2g087780 50.000 352 125 5 29 332 47 395 1.07e-109 325
MS.gene017783.t1 MTR_4g050190 48.521 338 125 5 41 332 57 391 2.21e-103 309
MS.gene017783.t1 MTR_2g099030 48.765 324 118 4 51 327 79 401 7.34e-100 300
MS.gene017783.t1 MTR_7g090310 41.067 375 166 6 12 331 11 385 4.93e-96 290
MS.gene017783.t1 MTR_7g090320 45.015 331 131 4 52 331 56 386 8.02e-96 290
MS.gene017783.t1 MTR_4g112670 42.525 301 152 3 50 330 35 334 4.86e-79 244
MS.gene017783.t1 MTR_4g112630 42.759 290 154 4 53 331 37 325 1.46e-75 235
MS.gene017783.t1 MTR_4g112650 39.359 343 174 5 3 326 2 329 9.04e-75 234
MS.gene017783.t1 MTR_2g058450 42.140 299 153 5 53 332 39 336 1.00e-68 218
MS.gene017783.t1 MTR_4g112620 37.716 289 139 3 54 331 42 300 5.24e-57 187
MS.gene017783.t1 MTR_2g058410 38.696 230 126 2 115 329 1 230 3.08e-44 152
MS.gene017783.t1 MTR_0003s0530 39.011 182 95 1 159 324 2 183 2.75e-38 135
MS.gene017783.t1 MTR_8g074210 35.776 232 128 4 51 282 75 285 4.47e-37 137
MS.gene017783.t1 MTR_8g074270 37.555 229 122 5 54 282 78 285 8.42e-37 136
MS.gene017783.t1 MTR_8g074170 37.662 231 119 7 54 282 78 285 2.74e-35 132
MS.gene017783.t1 MTR_2g042370 30.242 248 134 5 122 332 112 357 4.23e-26 107
MS.gene017783.t1 MTR_2g042420 26.486 370 211 10 1 332 3 349 4.50e-25 103
MS.gene017783.t1 MTR_1g075865 41.509 106 61 1 163 268 7 111 5.12e-24 95.9
MS.gene017783.t1 MTR_2g042430 27.331 311 166 9 55 328 77 364 1.57e-22 97.1
MS.gene017783.t1 MTR_4g112840 46.667 90 48 0 192 281 63 152 4.26e-22 91.7
MS.gene017783.t1 MTR_8g074320 40.310 129 72 3 112 237 95 221 7.97e-19 84.3
MS.gene017783.t1 MTR_2g058430 42.268 97 54 1 106 200 52 148 1.65e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017783.t1 AT3G57030 55.376 372 121 3 6 332 3 374 4.54e-144 412
MS.gene017783.t1 AT1G08470 49.408 338 121 5 41 332 56 389 3.46e-105 313
MS.gene017783.t1 AT5G22020 47.801 341 130 4 37 332 58 395 1.16e-103 310
MS.gene017783.t1 AT5G22020 47.801 341 130 4 37 332 58 395 1.16e-103 310
MS.gene017783.t1 AT5G22020 47.801 341 130 4 37 332 58 395 1.16e-103 310
MS.gene017783.t1 AT3G57020 43.697 357 155 6 14 329 15 366 1.48e-92 280
MS.gene017783.t1 AT3G57010 42.935 368 165 5 3 329 4 367 9.95e-92 278
MS.gene017783.t1 AT2G41290 46.131 336 132 6 45 332 42 376 2.24e-91 278
MS.gene017783.t1 AT3G59530 45.122 328 121 5 49 329 79 394 4.83e-90 275
MS.gene017783.t1 AT3G59530 45.122 328 121 5 49 329 79 394 4.83e-90 275
MS.gene017783.t1 AT3G59530 45.122 328 121 5 49 329 79 394 4.83e-90 275
MS.gene017783.t1 AT2G41300 46.452 310 123 3 60 329 84 390 1.29e-87 268
MS.gene017783.t1 AT3G57020 42.297 357 146 6 14 329 15 352 6.87e-86 263
MS.gene017783.t1 AT1G74020 42.662 293 151 6 54 332 38 327 2.40e-69 220
MS.gene017783.t1 AT1G74010 42.568 296 152 7 51 332 34 325 2.04e-67 214
MS.gene017783.t1 AT1G74000 40.476 294 158 6 53 332 39 329 2.32e-63 204
MS.gene017783.t1 AT3G51440 34.413 247 142 6 41 286 56 283 1.12e-30 119
MS.gene017783.t1 AT3G51430 32.271 251 150 6 37 286 52 283 1.84e-28 113
MS.gene017783.t1 AT3G51450 33.047 233 136 7 55 286 70 283 4.44e-28 112
MS.gene017783.t1 AT3G51430 31.325 249 151 6 37 284 52 281 7.22e-28 112
MS.gene017783.t1 AT3G51420 31.818 242 145 6 41 281 56 278 3.74e-27 110

Find 87 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCACTGATGTTCTTCA+TGG 0.198711 7.3:+18841730 None:intergenic
GAAATTCAAATGGGCAGTTT+TGG 0.232638 7.3:-18841832 MS.gene017783:CDS
TATATTGGTGTTTATAGTTT+AGG 0.238782 7.3:-18841662 MS.gene017783:CDS
CTCAATGTAGTGGGACCTAC+TGG 0.241265 7.3:-18842828 MS.gene017783:CDS
AATATTCTTGTACTTCTTAG+TGG 0.314755 7.3:-18842082 MS.gene017783:CDS
AGGGAAAATATTAGAAATCT+TGG 0.328667 7.3:-18841771 MS.gene017783:CDS
TTGCTTAAAGCAACACCATT+AGG 0.331103 7.3:+18841983 None:intergenic
GTATTGACTTTGCCAGCTTT+TGG 0.331769 7.3:+18841893 None:intergenic
GCGGGAGGCCACTAGGACTA+AGG 0.337333 7.3:-18842899 MS.gene017783:CDS
TATTAGAAATCTTGGGAGAT+TGG 0.345041 7.3:-18841763 MS.gene017783:CDS
AAACTATAAACACCAATATA+AGG 0.351153 7.3:+18841665 None:intergenic
ACTGCAGAATTCTTCGGCTT+TGG 0.352687 7.3:-18841925 MS.gene017783:CDS
TTGCTGTCACGAGTTCTAAT+AGG 0.352873 7.3:-18844308 MS.gene017783:intron
CTTCTTAGTGGAGACGCAAC+TGG 0.372850 7.3:-18842070 MS.gene017783:CDS
ACTCTCCGGTCCGACGGCTT+TGG 0.383656 7.3:+18844425 None:intergenic
CAGAGTTGGAGCGTATTTGC+GGG 0.405990 7.3:-18842917 MS.gene017783:CDS
AAGAGAGAAATGGAAAACTT+TGG 0.411409 7.3:-18841706 MS.gene017783:CDS
TCAATGTAGTGGGACCTACT+GGG 0.421424 7.3:-18842827 MS.gene017783:CDS
ATTCTTCGGCTTTGGTTTCG+TGG 0.425675 7.3:-18841917 MS.gene017783:CDS
CTTTCACTTCACCAATGACT+TGG 0.432489 7.3:-18842763 MS.gene017783:CDS
CTTATATTGTCGGGAAAACC+TGG 0.434775 7.3:+18841857 None:intergenic
TGAATTTCTCCTTATATTGT+CGG 0.438415 7.3:+18841847 None:intergenic
CCTCGAACTGCAGAATTCTT+CGG 0.438961 7.3:-18841931 MS.gene017783:CDS
CCGCAAATACGCTCCAACTC+TGG 0.450493 7.3:+18842918 None:intergenic
GAATTTCTCCTTATATTGTC+GGG 0.456126 7.3:+18841848 None:intergenic
GGTGTTGCTTTAAGCAAAGA+TGG 0.456261 7.3:-18841977 MS.gene017783:CDS
TTCACTGATATCCAAGTCAT+TGG 0.463204 7.3:+18842752 None:intergenic
AGTGAAGTGGAAGAGAGAAA+TGG 0.469053 7.3:-18841716 MS.gene017783:CDS
GGGAAAATATTAGAAATCTT+GGG 0.469300 7.3:-18841770 MS.gene017783:CDS
CCAGAGTTGGAGCGTATTTG+CGG 0.472672 7.3:-18842918 MS.gene017783:CDS
CGTATTTGCGGGAGGCCACT+AGG 0.472800 7.3:-18842906 MS.gene017783:CDS
GCATGAGAAGAGTGCTAGAA+AGG 0.478094 7.3:+18844542 None:intergenic
AATATAAGGAGAAATTCAAA+TGG 0.478511 7.3:-18841842 MS.gene017783:CDS
TGGTTTCGTGGACCAAAAGC+TGG 0.480246 7.3:-18841905 MS.gene017783:CDS
CCGAAGAATTCTGCAGTTCG+AGG 0.480808 7.3:+18841931 None:intergenic
TTTGATCCAGCAATGTGAAC+AGG 0.486477 7.3:+18844483 None:intergenic
CCATCCGCCACGCCGGTGTA+CGG 0.487653 7.3:+18844375 None:intergenic
TACTACATTGAGGATGTCCT+TGG 0.488098 7.3:+18844566 None:intergenic
GCTATAAAGCTGAGTGGTGA+AGG 0.488363 7.3:-18841791 MS.gene017783:CDS
CAAGTCATTGGTGAAGTGAA+AGG 0.495058 7.3:+18842764 None:intergenic
CCGTACACCGGCGTGGCGGA+TGG 0.496328 7.3:-18844375 MS.gene017783:CDS
GCGGCCATTCGCACCAGAGT+TGG 0.498504 7.3:-18842931 MS.gene017783:CDS
TCAGTGGAAATGCCTTATAT+TGG 0.502261 7.3:-18841677 MS.gene017783:CDS
TATATTGCTGATGCTTACCT+TGG 0.502524 7.3:-18842852 MS.gene017783:CDS
CGCTCCAACTCTGGTGCGAA+TGG 0.504089 7.3:+18842927 None:intergenic
AAAACTTTGGATTGCATCAG+TGG 0.505405 7.3:-18841693 MS.gene017783:CDS
AGCTTCTATTGCTAGTTGAG+TGG 0.511069 7.3:+18842797 None:intergenic
AAGTGGGAGGGGAAGGAACG+TGG 0.523034 7.3:-18844342 MS.gene017783:CDS
CAATGTAGTGGGACCTACTG+GGG 0.524671 7.3:-18842826 MS.gene017783:CDS
GAAGTGAAGGTCTTGTTAAG+AGG 0.528733 7.3:-18842016 MS.gene017783:CDS
AAGTCATTGGTGAAGTGAAA+GGG 0.530724 7.3:+18842765 None:intergenic
TGTTCACATTGCTGGATCAA+AGG 0.537126 7.3:-18844481 MS.gene017783:CDS
TACCTTGGCCTCAATGTAGT+GGG 0.537777 7.3:-18842837 MS.gene017783:CDS
GTCCGACGGCTTTGGTGACG+TGG 0.539978 7.3:+18844433 None:intergenic
TTCTTAGTGGAGACGCAACT+GGG 0.559170 7.3:-18842069 MS.gene017783:CDS
TTATCAAACCTTAGTCCTAG+TGG 0.561618 7.3:+18842891 None:intergenic
CAATGTGAACAGGTGAAAAG+AGG 0.562529 7.3:+18844493 None:intergenic
CGTCACCAAAGCCGTCGGAC+CGG 0.562729 7.3:-18844430 MS.gene017783:CDS
GTCCCACTACATTGAGGCCA+AGG 0.562852 7.3:+18842835 None:intergenic
GGGAGGGGAAGGAACGTGGT+TGG 0.562863 7.3:-18844338 MS.gene017783:CDS
CATGGTGAGGGTCCGTACAC+CGG 0.564118 7.3:-18844387 MS.gene017783:CDS
CATGAAGAACATCAGTGAAG+TGG 0.569248 7.3:-18841729 MS.gene017783:CDS
GAAATCTTGGGAGATTGGCA+AGG 0.571629 7.3:-18841758 MS.gene017783:CDS
TAAGTCAACAAAAGAAGTGA+AGG 0.571883 7.3:-18842029 MS.gene017783:CDS
TTATCGAAAACAAGACTCTC+CGG 0.573402 7.3:+18844411 None:intergenic
ATATAAGGAGAAATTCAAAT+GGG 0.580818 7.3:-18841841 MS.gene017783:CDS
ACACCGGCGTGGCGGATGGT+CGG 0.585681 7.3:-18844371 MS.gene017783:CDS
CAAGCACAGTCTATCAGAGA+AGG 0.594605 7.3:-18842701 MS.gene017783:intron
TTTCAAGGTCGAGGTGTGTG+CGG 0.594863 7.3:-18842950 MS.gene017783:intron
TTACCTTGGCCTCAATGTAG+TGG 0.599466 7.3:-18842838 MS.gene017783:CDS
AATGTAGTGGGACCTACTGG+GGG 0.601063 7.3:-18842825 MS.gene017783:CDS
AAATCTTGGGAGATTGGCAA+GGG 0.602246 7.3:-18841757 MS.gene017783:CDS
CTAGAAAGGTTACTACATTG+AGG 0.603481 7.3:+18844556 None:intergenic
AATCCGACCATCCGCCACGC+CGG 0.605536 7.3:+18844368 None:intergenic
CAACTAGCAATAGAAGCTGA+AGG 0.619883 7.3:-18842792 MS.gene017783:CDS
AACAAGACTCTCCGGTCCGA+CGG 0.620082 7.3:+18844419 None:intergenic
CAGTAGGTCCCACTACATTG+AGG 0.626504 7.3:+18842829 None:intergenic
CTATAAAGCTGAGTGGTGAA+GGG 0.627218 7.3:-18841790 MS.gene017783:CDS
CGTGGAGTATCTGAGCAGCA+TGG 0.630959 7.3:+18844451 None:intergenic
AGTTGGAGCGTATTTGCGGG+AGG 0.631308 7.3:-18842914 MS.gene017783:CDS
TATCATAAACATGAACTCCA+AGG 0.639632 7.3:-18844583 None:intergenic
CTCCACGTCACCAAAGCCGT+CGG 0.656986 7.3:-18844435 MS.gene017783:CDS
TTGGATATCAGTGAAGATGA+AGG 0.668380 7.3:-18842744 MS.gene017783:CDS
GGGTCCGTACACCGGCGTGG+CGG 0.673340 7.3:-18844379 MS.gene017783:CDS
TGAGGGTCCGTACACCGGCG+TGG 0.683753 7.3:-18844382 MS.gene017783:CDS
GGAGTATCTGAGCAGCATGG+AGG 0.725901 7.3:+18844454 None:intergenic
TCAGCAGCTATAAAGCTGAG+TGG 0.731970 7.3:-18841797 MS.gene017783:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAATAACTAAACT+AGG - chr7.3:18842112-18842131 MS.gene017783:intron 10.0%
!! TAGTTTAGTTATTAATTTAA+TGG + chr7.3:18842113-18842132 None:intergenic 10.0%
!!! TTCAACATATATATTTTTAA+GGG - chr7.3:18843689-18843708 MS.gene017783:intron 10.0%
!!! TTTCTTTATTACTATTTTTT+TGG - chr7.3:18841983-18842002 MS.gene017783:CDS 10.0%
!! AATATGATTCTTATAAACAA+TGG - chr7.3:18842296-18842315 MS.gene017783:intron 15.0%
!! AATTTATAAGTTTATGAAGT+AGG - chr7.3:18842400-18842419 MS.gene017783:intron 15.0%
!! ATAGGTATAGATATATTTAA+GGG + chr7.3:18842725-18842744 None:intergenic 15.0%
!! CTTCATAAACTTATAAATTA+AGG + chr7.3:18842399-18842418 None:intergenic 15.0%
!! TGATAAATAATCTCAATTAA+TGG - chr7.3:18843136-18843155 MS.gene017783:intron 15.0%
!! TTATGAAAACGATTTATATA+TGG + chr7.3:18842778-18842797 None:intergenic 15.0%
!!! AACTATAAGCTTAATTTTTA+AGG + chr7.3:18842470-18842489 None:intergenic 15.0%
!!! ACTATAAGCTTAATTTTTAA+GGG + chr7.3:18842469-18842488 None:intergenic 15.0%
!!! CTTCAACATATATATTTTTA+AGG - chr7.3:18843688-18843707 MS.gene017783:intron 15.0%
!!! TACTTTTAATTTAGCTTATT+AGG - chr7.3:18842026-18842045 MS.gene017783:CDS 15.0%
!! AAACTATAAACACCAATATA+AGG + chr7.3:18844566-18844585 None:intergenic 20.0%
!! AAATATAAGTATGAGTTAGA+TGG + chr7.3:18843220-18843239 None:intergenic 20.0%
!! AATAGAGTTAATTGTAGAAA+AGG + chr7.3:18843577-18843596 None:intergenic 20.0%
!! AATATAAGGAGAAATTCAAA+TGG - chr7.3:18844386-18844405 MS.gene017783:CDS 20.0%
!! ATATAAGGAGAAATTCAAAT+GGG - chr7.3:18844387-18844406 MS.gene017783:CDS 20.0%
!! CATAGGTATAGATATATTTA+AGG + chr7.3:18842726-18842745 None:intergenic 20.0%
!! CTAAAAATTTGTATTTCACA+AGG + chr7.3:18843840-18843859 None:intergenic 20.0%
!! CTTAAATTAGTCAATCTAAA+CGG - chr7.3:18842904-18842923 MS.gene017783:CDS 20.0%
!! GAAGAAGTAAATGAAAAAAA+TGG + chr7.3:18843922-18843941 None:intergenic 20.0%
!! GTACTACTAACAATATATAT+TGG - chr7.3:18843774-18843793 MS.gene017783:intron 20.0%
!! GTAGAAGTAAAAACTAAAAA+CGG - chr7.3:18842603-18842622 MS.gene017783:intron 20.0%
!! TACAAAATCCTTCTAATTTA+AGG + chr7.3:18843866-18843885 None:intergenic 20.0%
!! TAGTTATTAATTTAATGGCT+TGG + chr7.3:18842108-18842127 None:intergenic 20.0%
!! TTAAATTAGTCAATCTAAAC+GGG - chr7.3:18842905-18842924 MS.gene017783:CDS 20.0%
!!! ATATTTTTAAGGGTATGATT+GGG - chr7.3:18843699-18843718 MS.gene017783:intron 20.0%
!!! CTATAAGCTTAATTTTTAAG+GGG + chr7.3:18842468-18842487 None:intergenic 20.0%
!!! TATATTGGTGTTTATAGTTT+AGG - chr7.3:18844566-18844585 MS.gene017783:CDS 20.0%
!!! TATATTTTTAAGGGTATGAT+TGG - chr7.3:18843698-18843717 MS.gene017783:intron 20.0%
!!! TCTTTTTATATGGCATATTA+TGG + chr7.3:18844078-18844097 None:intergenic 20.0%
!!! TGAAGTTTTTTCTTAAGAAT+TGG - chr7.3:18842321-18842340 MS.gene017783:intron 20.0%
!!! TGCTTTTAAGTTATTTTCAT+AGG + chr7.3:18842743-18842762 None:intergenic 20.0%
!!! TTTAGTTTCCTTAAATTAGA+AGG - chr7.3:18843855-18843874 MS.gene017783:intron 20.0%
! AATAACTTAAAAGCAGCTTA+TGG - chr7.3:18842748-18842767 MS.gene017783:CDS 25.0%
! AATATTCTTGTACTTCTTAG+TGG - chr7.3:18844146-18844165 MS.gene017783:intron 25.0%
! AGGGAAAATATTAGAAATCT+TGG - chr7.3:18844457-18844476 MS.gene017783:CDS 25.0%
! CATATAAAAAGAATGAGTGA+TGG - chr7.3:18844086-18844105 MS.gene017783:intron 25.0%
! CTAAGGTTTGATAAGAAAAA+TGG - chr7.3:18843346-18843365 MS.gene017783:intron 25.0%
! CTTAAAACAGATAGAAAGTT+AGG + chr7.3:18843042-18843061 None:intergenic 25.0%
! CTTAAATTAGGCAAATTCTA+TGG - chr7.3:18842052-18842071 MS.gene017783:CDS 25.0%
! CTTATTAGGAGACTTAAATT+AGG - chr7.3:18842040-18842059 MS.gene017783:CDS 25.0%
! GGGAAAATATTAGAAATCTT+GGG - chr7.3:18844458-18844477 MS.gene017783:CDS 25.0%
! TAGGTAATAGTAATACCATT+TGG - chr7.3:18841939-18841958 MS.gene017783:CDS 25.0%
! TGAATTTCTCCTTATATTGT+CGG + chr7.3:18844384-18844403 None:intergenic 25.0%
! TGATGGAATGATTTATATGT+TGG - chr7.3:18844103-18844122 MS.gene017783:intron 25.0%
! TTGGATTTGAAGATTTATCT+CGG - chr7.3:18843793-18843812 MS.gene017783:intron 25.0%
! TTTACGAAATATGCATGAAA+AGG - chr7.3:18843644-18843663 MS.gene017783:intron 25.0%
!! AGTTTTTACTTCTACTAGTT+TGG + chr7.3:18842598-18842617 None:intergenic 25.0%
!! CATCACTCATTCTTTTTATA+TGG + chr7.3:18844088-18844107 None:intergenic 25.0%
!! TAAGTAAGTCTTTTAAGCAT+GGG - chr7.3:18842647-18842666 MS.gene017783:intron 25.0%
!!! GATTAGTTGTATGATTTTCA+AGG - chr7.3:18843263-18843282 MS.gene017783:intron 25.0%
!!! GTTTTAAGACATTGATAAAC+TGG - chr7.3:18843054-18843073 MS.gene017783:intron 25.0%
AAACTAAAAACGGTATGACT+TGG - chr7.3:18842613-18842632 MS.gene017783:intron 30.0%
AAGAGAGAAATGGAAAACTT+TGG - chr7.3:18844522-18844541 MS.gene017783:CDS 30.0%
ACCCATACACTCAAAATTAT+GGG + chr7.3:18842082-18842101 None:intergenic 30.0%
AGAGTTAATTGTAGAAAAGG+AGG + chr7.3:18843574-18843593 None:intergenic 30.0%
CATGCATATTTGATATGTTG+GGG - chr7.3:18842511-18842530 MS.gene017783:intron 30.0%
GAATTTCTCCTTATATTGTC+GGG + chr7.3:18844383-18844402 None:intergenic 30.0%
GCATGCATATTTGATATGTT+GGG - chr7.3:18842510-18842529 MS.gene017783:intron 30.0%
TAAGTCAACAAAAGAAGTGA+AGG - chr7.3:18844199-18844218 MS.gene017783:intron 30.0%
TAATTGTAGAAAAGGAGGTA+AGG + chr7.3:18843569-18843588 None:intergenic 30.0%
TACCCATACACTCAAAATTA+TGG + chr7.3:18842083-18842102 None:intergenic 30.0%
TATTAGAAATCTTGGGAGAT+TGG - chr7.3:18844465-18844484 MS.gene017783:CDS 30.0%
TGCATGCATATTTGATATGT+TGG - chr7.3:18842509-18842528 MS.gene017783:intron 30.0%
! AAATTCAAATGGGCAGTTTT+GGG - chr7.3:18844397-18844416 MS.gene017783:CDS 30.0%
! AAGTAAGTCTTTTAAGCATG+GGG - chr7.3:18842648-18842667 MS.gene017783:intron 30.0%
! ATCGTTTTCATAAGCTATTG+TGG - chr7.3:18842785-18842804 MS.gene017783:CDS 30.0%
! CTAAGTAAGTCTTTTAAGCA+TGG - chr7.3:18842646-18842665 MS.gene017783:intron 30.0%
!! ACCCATAATTTTGAGTGTAT+GGG - chr7.3:18842078-18842097 MS.gene017783:CDS 30.0%
!! ATTTTTAAGGGGAACTTCTA+CGG + chr7.3:18842457-18842476 None:intergenic 30.0%
!!! AGTCTTGTTTTCGATAAACA+TGG - chr7.3:18841823-18841842 MS.gene017783:CDS 30.0%
!!! TTAATGGCTATTTTTTTCCG+AGG - chr7.3:18843152-18843171 MS.gene017783:intron 30.0%
AAAACTTTGGATTGCATCAG+TGG - chr7.3:18844535-18844554 MS.gene017783:CDS 35.0%
AAGCATGGGGTCTAAAAAAT+CGG - chr7.3:18842661-18842680 MS.gene017783:intron 35.0%
AAGTCATTGGTGAAGTGAAA+GGG + chr7.3:18843466-18843485 None:intergenic 35.0%
CAACACTAAATACGAAGAAG+TGG + chr7.3:18842563-18842582 None:intergenic 35.0%
CTAGAAAGGTTACTACATTG+AGG + chr7.3:18841675-18841694 None:intergenic 35.0%
TATATTGCTGATGCTTACCT+TGG - chr7.3:18843376-18843395 MS.gene017783:intron 35.0%
TCAGTGGAAATGCCTTATAT+TGG - chr7.3:18844551-18844570 MS.gene017783:CDS 35.0%
TGAAACGTGAAAACACCAAA+TGG + chr7.3:18841957-18841976 None:intergenic 35.0%
TTATCAAACCTTAGTCCTAG+TGG + chr7.3:18843340-18843359 None:intergenic 35.0%
TTATCGAAAACAAGACTCTC+CGG + chr7.3:18841820-18841839 None:intergenic 35.0%
TTCACTGATATCCAAGTCAT+TGG + chr7.3:18843479-18843498 None:intergenic 35.0%
TTGCTTAAAGCAACACCATT+AGG + chr7.3:18844248-18844267 None:intergenic 35.0%
TTGGATATCAGTGAAGATGA+AGG - chr7.3:18843484-18843503 MS.gene017783:intron 35.0%
! AACCTTGTTGTACATATCCT+CGG + chr7.3:18843172-18843191 None:intergenic 35.0%
! AATACTTTTGCTGATCTTCC+AGG - chr7.3:18844353-18844372 MS.gene017783:CDS 35.0%
! AGTTTATGAAGTAGGAGTAC+CGG - chr7.3:18842408-18842427 MS.gene017783:intron 35.0%
! CCTTATTCTAAAAGGCAAGA+GGG - chr7.3:18842929-18842948 MS.gene017783:CDS 35.0%
! CTGAAACCGTTTGAAACTAA+AGG + chr7.3:18842988-18843007 None:intergenic 35.0%
! GAAATTCAAATGGGCAGTTT+TGG - chr7.3:18844396-18844415 MS.gene017783:CDS 35.0%
! GTTTTCGATAAACATGGTGA+GGG - chr7.3:18841829-18841848 MS.gene017783:CDS 35.0%
! TCTCTGCCTTTAGTTTCAAA+CGG - chr7.3:18842979-18842998 MS.gene017783:intron 35.0%
! TGTTTTCGATAAACATGGTG+AGG - chr7.3:18841828-18841847 MS.gene017783:CDS 35.0%
!! CACCCATAATTTTGAGTGTA+TGG - chr7.3:18842077-18842096 MS.gene017783:CDS 35.0%
!! TTGTATGATTTTCAAGGTCG+AGG - chr7.3:18843269-18843288 MS.gene017783:intron 35.0%
!!! CCTCTTGCCTTTTAGAATAA+GGG + chr7.3:18842931-18842950 None:intergenic 35.0%
AAACGGGCCCTTATTCTAAA+AGG - chr7.3:18842921-18842940 MS.gene017783:CDS 40.0%
AAATCTTGGGAGATTGGCAA+GGG - chr7.3:18844471-18844490 MS.gene017783:CDS 40.0%
AAGAAGTGGTCGATGAATTG+AGG + chr7.3:18842549-18842568 None:intergenic 40.0%
AGCTTCTATTGCTAGTTGAG+TGG + chr7.3:18843434-18843453 None:intergenic 40.0%
AGTGAAGTGGAAGAGAGAAA+TGG - chr7.3:18844512-18844531 MS.gene017783:CDS 40.0%
CAACTAGCAATAGAAGCTGA+AGG - chr7.3:18843436-18843455 MS.gene017783:intron 40.0%
CAAGTCATTGGTGAAGTGAA+AGG + chr7.3:18843467-18843486 None:intergenic 40.0%
CAATGTGAACAGGTGAAAAG+AGG + chr7.3:18841738-18841757 None:intergenic 40.0%
CACTTCACTGATGTTCTTCA+TGG + chr7.3:18844501-18844520 None:intergenic 40.0%
CATGAAGAACATCAGTGAAG+TGG - chr7.3:18844499-18844518 MS.gene017783:CDS 40.0%
CATGCAGTTTAACACTTTCG+AGG + chr7.3:18842495-18842514 None:intergenic 40.0%
CTATAAAGCTGAGTGGTGAA+GGG - chr7.3:18844438-18844457 MS.gene017783:CDS 40.0%
CTTATATTGTCGGGAAAACC+TGG + chr7.3:18844374-18844393 None:intergenic 40.0%
CTTTCACTTCACCAATGACT+TGG - chr7.3:18843465-18843484 MS.gene017783:intron 40.0%
TACTACATTGAGGATGTCCT+TGG + chr7.3:18841665-18841684 None:intergenic 40.0%
TAGAGCCTGTTCAAGAGTTT+AGG + chr7.3:18843976-18843995 None:intergenic 40.0%
TGTTCACATTGCTGGATCAA+AGG - chr7.3:18841747-18841766 MS.gene017783:CDS 40.0%
TTCCGAGGATATGTACAACA+AGG - chr7.3:18843167-18843186 MS.gene017783:intron 40.0%
TTTGATCCAGCAATGTGAAC+AGG + chr7.3:18841748-18841767 None:intergenic 40.0%
TTTGTGAATGCAAGCAAGCA+TGG - chr7.3:18843013-18843032 MS.gene017783:intron 40.0%
! AAGGGTATGATTGGGAGATA+AGG - chr7.3:18843707-18843726 MS.gene017783:intron 40.0%
! ACAGGTGAAAAGAGGTTTTG+TGG + chr7.3:18841730-18841749 None:intergenic 40.0%
! CAGGTTTTCCCGACAATATA+AGG - chr7.3:18844372-18844391 MS.gene017783:CDS 40.0%
! CCCTTATTCTAAAAGGCAAG+AGG - chr7.3:18842928-18842947 MS.gene017783:CDS 40.0%
! TTGCTGTCACGAGTTCTAAT+AGG - chr7.3:18841920-18841939 MS.gene017783:CDS 40.0%
! TTTTCACCTGTTCACATTGC+TGG - chr7.3:18841739-18841758 MS.gene017783:CDS 40.0%
!! AACGGTATGACTTGGTTTGT+AGG - chr7.3:18842621-18842640 MS.gene017783:intron 40.0%
!! AGAGGACTTGCTTTTCCTAA+TGG - chr7.3:18844230-18844249 MS.gene017783:intron 40.0%
!! CAGGTGAAAAGAGGTTTTGT+GGG + chr7.3:18841729-18841748 None:intergenic 40.0%
!! GAAGTGAAGGTCTTGTTAAG+AGG - chr7.3:18844212-18844231 MS.gene017783:intron 40.0%
!! GGTGTTGCTTTAAGCAAAGA+TGG - chr7.3:18844251-18844270 MS.gene017783:intron 40.0%
!!! CCCTCTTGCCTTTTAGAATA+AGG + chr7.3:18842932-18842951 None:intergenic 40.0%
!!! GTATTGACTTTGCCAGCTTT+TGG + chr7.3:18844338-18844357 None:intergenic 40.0%
!!! TGTTGGTCACTTTTGTTTGC+AGG - chr7.3:18844120-18844139 MS.gene017783:intron 40.0%
ACGGTACACCTCACAAATTG+AGG + chr7.3:18842438-18842457 None:intergenic 45.0%
ACTGCAGAATTCTTCGGCTT+TGG - chr7.3:18844303-18844322 MS.gene017783:intron 45.0%
AGCCTGTTCAAGAGTTTAGG+AGG + chr7.3:18843973-18843992 None:intergenic 45.0%
CAAGCACAGTCTATCAGAGA+AGG - chr7.3:18843527-18843546 MS.gene017783:intron 45.0%
CCTCACAAATTGAGGTGTAC+CGG + chr7.3:18842430-18842449 None:intergenic 45.0%
CCTCGAACTGCAGAATTCTT+CGG - chr7.3:18844297-18844316 MS.gene017783:intron 45.0%
CCTGTTCAAGAGTTTAGGAG+GGG + chr7.3:18843971-18843990 None:intergenic 45.0%
GAAATCTTGGGAGATTGGCA+AGG - chr7.3:18844470-18844489 MS.gene017783:CDS 45.0%
GCCTGTTCAAGAGTTTAGGA+GGG + chr7.3:18843972-18843991 None:intergenic 45.0%
GCTATAAAGCTGAGTGGTGA+AGG - chr7.3:18844437-18844456 MS.gene017783:CDS 45.0%
TACCTTGGCCTCAATGTAGT+GGG - chr7.3:18843391-18843410 MS.gene017783:intron 45.0%
TCAGCAGCTATAAAGCTGAG+TGG - chr7.3:18844431-18844450 MS.gene017783:CDS 45.0%
TTACCTTGGCCTCAATGTAG+TGG - chr7.3:18843390-18843409 MS.gene017783:intron 45.0%
TTCTTAGTGGAGACGCAACT+GGG - chr7.3:18844159-18844178 MS.gene017783:intron 45.0%
! ATTCTTCGGCTTTGGTTTCG+TGG - chr7.3:18844311-18844330 MS.gene017783:CDS 45.0%
! TCAATGTAGTGGGACCTACT+GGG - chr7.3:18843401-18843420 MS.gene017783:intron 45.0%
!! GAGGTTTTGTGGGTTGAATG+AGG + chr7.3:18841719-18841738 None:intergenic 45.0%
!! GCATGAGAAGAGTGCTAGAA+AGG + chr7.3:18841689-18841708 None:intergenic 45.0%
!!! GGATGGTCGGATTTTGAAGT+GGG - chr7.3:18841870-18841889 MS.gene017783:CDS 45.0%
AGTTTAGGAGGGGAGAGAAG+AGG + chr7.3:18843961-18843980 None:intergenic 50.0%
CAGAGTTGGAGCGTATTTGC+GGG - chr7.3:18843311-18843330 MS.gene017783:intron 50.0%
CAGTAGGTCCCACTACATTG+AGG + chr7.3:18843402-18843421 None:intergenic 50.0%
CCAGAGTTGGAGCGTATTTG+CGG - chr7.3:18843310-18843329 MS.gene017783:intron 50.0%
CCCCTCCTAAACTCTTGAAC+AGG - chr7.3:18843968-18843987 MS.gene017783:intron 50.0%
CCGAAGAATTCTGCAGTTCG+AGG + chr7.3:18844300-18844319 None:intergenic 50.0%
CCGGTACACCTCAATTTGTG+AGG - chr7.3:18842427-18842446 MS.gene017783:intron 50.0%
CTTCTTAGTGGAGACGCAAC+TGG - chr7.3:18844158-18844177 MS.gene017783:intron 50.0%
TGGTTTCGTGGACCAAAAGC+TGG - chr7.3:18844323-18844342 MS.gene017783:CDS 50.0%
TTTCAAGGTCGAGGTGTGTG+CGG - chr7.3:18843278-18843297 MS.gene017783:intron 50.0%
! AATGTAGTGGGACCTACTGG+GGG - chr7.3:18843403-18843422 MS.gene017783:intron 50.0%
! CAATGTAGTGGGACCTACTG+GGG - chr7.3:18843402-18843421 MS.gene017783:intron 50.0%
! CTCAATGTAGTGGGACCTAC+TGG - chr7.3:18843400-18843419 MS.gene017783:intron 50.0%
!! CGGATGGTCGGATTTTGAAG+TGG - chr7.3:18841869-18841888 MS.gene017783:CDS 50.0%
!!! GATTTTGAAGTGGGAGGGGA+AGG - chr7.3:18841879-18841898 MS.gene017783:CDS 50.0%
!!! GGTCGGATTTTGAAGTGGGA+GGG - chr7.3:18841874-18841893 MS.gene017783:CDS 50.0%
!!! GTCGGATTTTGAAGTGGGAG+GGG - chr7.3:18841875-18841894 MS.gene017783:CDS 50.0%
!!! TGGTCGGATTTTGAAGTGGG+AGG - chr7.3:18841873-18841892 MS.gene017783:CDS 50.0%
AACAAGACTCTCCGGTCCGA+CGG + chr7.3:18841812-18841831 None:intergenic 55.0%
AGTTGGAGCGTATTTGCGGG+AGG - chr7.3:18843314-18843333 MS.gene017783:intron 55.0%
CCGCAAATACGCTCCAACTC+TGG + chr7.3:18843313-18843332 None:intergenic 55.0%
GTCCCACTACATTGAGGCCA+AGG + chr7.3:18843396-18843415 None:intergenic 55.0%
TGAGTGGCTAAACCCCCAGT+AGG + chr7.3:18843418-18843437 None:intergenic 55.0%
! CGTGGAGTATCTGAGCAGCA+TGG + chr7.3:18841780-18841799 None:intergenic 55.0%
! GGAGTATCTGAGCAGCATGG+AGG + chr7.3:18841777-18841796 None:intergenic 55.0%
AAGTGGGAGGGGAAGGAACG+TGG - chr7.3:18841886-18841905 MS.gene017783:CDS 60.0%
CATGGTGAGGGTCCGTACAC+CGG - chr7.3:18841841-18841860 MS.gene017783:CDS 60.0%
CGCTCCAACTCTGGTGCGAA+TGG + chr7.3:18843304-18843323 None:intergenic 60.0%
CGTATTTGCGGGAGGCCACT+AGG - chr7.3:18843322-18843341 MS.gene017783:intron 60.0%
CTCCACGTCACCAAAGCCGT+CGG - chr7.3:18841793-18841812 MS.gene017783:CDS 60.0%
AATCCGACCATCCGCCACGC+CGG + chr7.3:18841863-18841882 None:intergenic 65.0%
ACTCTCCGGTCCGACGGCTT+TGG + chr7.3:18841806-18841825 None:intergenic 65.0%
CGTCACCAAAGCCGTCGGAC+CGG - chr7.3:18841798-18841817 MS.gene017783:CDS 65.0%
GCGGCCATTCGCACCAGAGT+TGG - chr7.3:18843297-18843316 MS.gene017783:intron 65.0%
GCGGGAGGCCACTAGGACTA+AGG - chr7.3:18843329-18843348 MS.gene017783:intron 65.0%
GGGAGGGGAAGGAACGTGGT+TGG - chr7.3:18841890-18841909 MS.gene017783:CDS 65.0%
!! GTCCGACGGCTTTGGTGACG+TGG + chr7.3:18841798-18841817 None:intergenic 65.0%
CCATCCGCCACGCCGGTGTA+CGG + chr7.3:18841856-18841875 None:intergenic 70.0%
TGAGGGTCCGTACACCGGCG+TGG - chr7.3:18841846-18841865 MS.gene017783:CDS 70.0%
!! ACACCGGCGTGGCGGATGGT+CGG - chr7.3:18841857-18841876 MS.gene017783:CDS 70.0%
GGGTCCGTACACCGGCGTGG+CGG - chr7.3:18841849-18841868 MS.gene017783:CDS 75.0%
! CCGTACACCGGCGTGGCGGA+TGG - chr7.3:18841853-18841872 MS.gene017783:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 18841655 18844595 18841655 ID=MS.gene017783
chr7.3 mRNA 18841655 18844595 18841655 ID=MS.gene017783.t1;Parent=MS.gene017783
chr7.3 exon 18844309 18844595 18844309 ID=MS.gene017783.t1.exon1;Parent=MS.gene017783.t1
chr7.3 CDS 18844309 18844595 18844309 ID=cds.MS.gene017783.t1;Parent=MS.gene017783.t1
chr7.3 exon 18842702 18842965 18842702 ID=MS.gene017783.t1.exon2;Parent=MS.gene017783.t1
chr7.3 CDS 18842702 18842965 18842702 ID=cds.MS.gene017783.t1;Parent=MS.gene017783.t1
chr7.3 exon 18841655 18842108 18841655 ID=MS.gene017783.t1.exon3;Parent=MS.gene017783.t1
chr7.3 CDS 18841655 18842108 18841655 ID=cds.MS.gene017783.t1;Parent=MS.gene017783.t1
Gene Sequence

>MS.gene017783

ATGAACTCCAAGGACATCCTCAATGTAGTAACCTTTCTAGCACTCTTCTCATGCATCTTCGCCTCATTCAACCCACAAAACCTCTTTTCACCTGTTCACATTGCTGGATCAAAGGACAGCCTCCATGCTGCTCAGATACTCCACGTCACCAAAGCCGTCGGACCGGAGAGTCTTGTTTTCGATAAACATGGTGAGGGTCCGTACACCGGCGTGGCGGATGGTCGGATTTTGAAGTGGGAGGGGAAGGAACGTGGTTGGACTGAATTTGCTGTCACGAGTTCTAATAGGTAATAGTAATACCATTTGGTGTTTTCACGTTTCAAAATTATTTCTTTATTACTATTTTTTTGGTAGCACAATTTATTGTTGTTTACTTTTAATTTAGCTTATTAGGAGACTTAAATTAGGCAAATTCTATGGTACACCCATAATTTTGAGTGTATGGGTACACCAAGCCATTAAATTAATAACTAAACTAGGTTTTTTTTTAAGAAAAATAATTATTTTCTATCATTAACAATTATAATAATTAAATCATATTTATCAAAAGCATCGACGACATAAAATTTACTTTTTTTGAATTTTTATTACTTATAAACAAATAATATTGATTATTTTTTATGAAAAAATATTAAAAATTTAATATGATTCTTATAAACAATGGAATGAAGTTTTTTCTTAAGAATTGGTGTTTTCTAAAATATAAATATTAACAAATAACTATTTATTTCATAAAATGAACCTTAATTTATAAGTTTATGAAGTAGGAGTACCGGTACACCTCAATTTGTGAGGTGTACCGTAGAAGTTCCCCTTAAAAATTAAGCTTATAGTTGTCCTCGAAAGTGTTAAACTGCATGCATATTTGATATGTTGGGGTGAATGTTTAAACCTCAATTCATCGACCACTTCTTCGTATTTAGTGTTGTTAGATTTGTTGCCAAACTAGTAGAAGTAAAAACTAAAAACGGTATGACTTGGTTTGTAGGTGCTAAGTAAGTCTTTTAAGCATGGGGTCTAAAAAATCGGTTTTCGATATAGAAAAGTTTTGTTGCGAAATATATTAACCCTTAAATATATCTATACCTATGAAAATAACTTAAAAGCAGCTTATGGCGCTCCATATATAAATCGTTTTCATAAGCTATTGTGGATCGCTTGTGAAAATAACTTAAAAGCAGCTTATGAAACATGTCATAAGTTGTTTTTCTAAGCTCTCTCATTGCAAGTATTTACGACAAAAGATAAACTTAAATTAGTCAATCTAAACGGGCCCTTATTCTAAAAGGCAAGAGGGATGAGAACAAAAAAGTGAACAATGCAATCTCTGCCTTTAGTTTCAAACGGTTTCAGCATTGTTTGTGAATGCAAGCAAGCATGGAGACCTAACTTTCTATCTGTTTTAAGACATTGATAAACTGGCGAATTTTGCAAGAATGTATCACTTATTAGTTGTTCTAGCTAATATTATAATCAAATAATGATAAATAATCTCAATTAATGGCTATTTTTTTCCGAGGATATGTACAACAAGGTTATATGCTGATTATTTTATTTGAATGCCATCTAACTCATACTTATATTTGCATTTTCTTATGAATTTAATGAGATTAGTTGTATGATTTTCAAGGTCGAGGTGTGTGCGGCCATTCGCACCAGAGTTGGAGCGTATTTGCGGGAGGCCACTAGGACTAAGGTTTGATAAGAAAAATGGAGATCTGTATATTGCTGATGCTTACCTTGGCCTCAATGTAGTGGGACCTACTGGGGGTTTAGCCACTCAACTAGCAATAGAAGCTGAAGGACATCCCTTTCACTTCACCAATGACTTGGATATCAGTGAAGATGAAGGTGTTATTTACTTCACTGATTCAAGCACAGTCTATCAGAGAAGGTAAGCTCAACACTAAACCTTACCTCCTTTTCTACAATTAACTCTATTTGCATTTTGTAGAACAACATTGCTATTGATTGCGAACAATTTATGTTTTTACGAAATATGCATGAAAAGGTGCAAAGTTGTTATTCGTACACTTCAACATATATATTTTTAAGGGTATGATTGGGAGATAAGGATAAATGAATGCTTATAAATAGTAGTATACTTTTTATTTTTCAAGTACTACTAACAATATATATTGGATTTGAAGATTTATCTCGGTAATTCAAAACTCTTCAAAATCCTTGTGAAATACAAATTTTTAGTTTCCTTAAATTAGAAGGATTTTGTATTTTATCGAAAAAAGTAAATCTCTCAAAGTCGTCCATTTTTTTCATTTACTTCTTCTTTTTTCTAAAGTCATCCTCTTCTCTCCCCTCCTAAACTCTTGAACAGGCTCTAAATATATTTAGTATCTCTTTTATAAAGCTAAACATAACATCACACTAAGATAATTTTTGAGAAAGCAATGCAATTAAATCCATAATATGCCATATAAAAAGAATGAGTGATGGAATGATTTATATGTTGGTCACTTTTGTTTGCAGGCAAAATATTCTTGTACTTCTTAGTGGAGACGCAACTGGGCGATTAATGAAATATCATAAGTCAACAAAAGAAGTGAAGGTCTTGTTAAGAGGACTTGCTTTTCCTAATGGTGTTGCTTTAAGCAAAGATGGTTCATTTCTTCTAGTAGCTGAAACCTCGAACTGCAGAATTCTTCGGCTTTGGTTTCGTGGACCAAAAGCTGGCAAAGTCAATACTTTTGCTGATCTTCCAGGTTTTCCCGACAATATAAGGAGAAATTCAAATGGGCAGTTTTGGGTTGCTTTACATTCAGCAGCTATAAAGCTGAGTGGTGAAGGGAAAATATTAGAAATCTTGGGAGATTGGCAAGGGAAGACCATGAAGAACATCAGTGAAGTGGAAGAGAGAAATGGAAAACTTTGGATTGCATCAGTGGAAATGCCTTATATTGGTGTTTATAGTTTAGGATTATAA

Protein sequence

>MS.gene017783.t1

MNSKDILNVVTFLALFSCIFASFNPQNLFSPVHIAGSKDSLHAAQILHVTKAVGPESLVFDKHGEGPYTGVADGRILKWEGKERGWTEFAVTSSNRSRCVRPFAPELERICGRPLGLRFDKKNGDLYIADAYLGLNVVGPTGGLATQLAIEAEGHPFHFTNDLDISEDEGVIYFTDSSTVYQRRQNILVLLSGDATGRLMKYHKSTKEVKVLLRGLAFPNGVALSKDGSFLLVAETSNCRILRLWFRGPKAGKVNTFADLPGFPDNIRRNSNGQFWVALHSAAIKLSGEGKILEILGDWQGKTMKNISEVEERNGKLWIASVEMPYIGVYSLGL