Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017787.t1 | XP_003625040.2 | 93.8 | 275 | 17 | 0 | 14 | 288 | 95 | 369 | 2.20E-145 | 525 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017787.t1 | Q4V3D9 | 65.7 | 277 | 93 | 2 | 14 | 288 | 98 | 374 | 1.4e-100 | 367.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017787.t1 | G7KRN9 | 93.8 | 275 | 17 | 0 | 14 | 288 | 95 | 369 | 1.6e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017787 | MS.gene61630 | PPI |
| MS.gene059296 | MS.gene017787 | PPI |
| MS.gene66625 | MS.gene017787 | PPI |
| MS.gene017787 | MS.gene35719 | PPI |
| MS.gene017787 | MS.gene061292 | PPI |
| MS.gene017787 | MS.gene034366 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017787.t1 | MTR_7g090300 | 93.818 | 275 | 17 | 0 | 14 | 288 | 95 | 369 | 0.0 | 535 |
| MS.gene017787.t1 | MTR_7g490350 | 87.636 | 275 | 34 | 0 | 14 | 288 | 95 | 369 | 1.76e-180 | 502 |
| MS.gene017787.t1 | MTR_7g490330 | 70.909 | 275 | 42 | 1 | 14 | 288 | 89 | 325 | 1.16e-135 | 387 |
| MS.gene017787.t1 | MTR_5g091980 | 70.909 | 275 | 39 | 2 | 14 | 288 | 90 | 323 | 6.11e-134 | 382 |
| MS.gene017787.t1 | MTR_2g087780 | 55.056 | 267 | 117 | 2 | 24 | 288 | 130 | 395 | 4.22e-98 | 293 |
| MS.gene017787.t1 | MTR_4g050190 | 50.680 | 294 | 134 | 5 | 3 | 288 | 101 | 391 | 4.12e-94 | 283 |
| MS.gene017787.t1 | MTR_2g099030 | 48.519 | 270 | 137 | 2 | 15 | 283 | 133 | 401 | 1.42e-84 | 259 |
| MS.gene017787.t1 | MTR_7g090310 | 46.763 | 278 | 142 | 4 | 16 | 287 | 108 | 385 | 2.53e-84 | 258 |
| MS.gene017787.t1 | MTR_7g090320 | 45.683 | 278 | 145 | 4 | 16 | 287 | 109 | 386 | 2.11e-83 | 256 |
| MS.gene017787.t1 | MTR_4g112670 | 37.786 | 262 | 141 | 3 | 25 | 286 | 95 | 334 | 5.39e-55 | 181 |
| MS.gene017787.t1 | MTR_4g112650 | 37.308 | 260 | 137 | 4 | 25 | 282 | 94 | 329 | 1.14e-52 | 175 |
| MS.gene017787.t1 | MTR_2g058450 | 38.722 | 266 | 138 | 3 | 24 | 288 | 95 | 336 | 2.03e-51 | 172 |
| MS.gene017787.t1 | MTR_4g112630 | 35.206 | 267 | 136 | 2 | 24 | 287 | 93 | 325 | 5.15e-51 | 171 |
| MS.gene017787.t1 | MTR_2g058410 | 34.252 | 254 | 142 | 3 | 33 | 285 | 1 | 230 | 5.58e-41 | 142 |
| MS.gene017787.t1 | MTR_8g074270 | 36.078 | 255 | 151 | 8 | 30 | 283 | 118 | 361 | 3.31e-37 | 135 |
| MS.gene017787.t1 | MTR_4g112620 | 29.123 | 285 | 139 | 4 | 5 | 287 | 77 | 300 | 3.06e-36 | 131 |
| MS.gene017787.t1 | MTR_8g074170 | 39.153 | 189 | 112 | 3 | 30 | 218 | 118 | 303 | 5.43e-35 | 130 |
| MS.gene017787.t1 | MTR_0003s0530 | 34.804 | 204 | 111 | 3 | 77 | 280 | 2 | 183 | 1.10e-33 | 122 |
| MS.gene017787.t1 | MTR_8g074210 | 32.184 | 261 | 153 | 8 | 30 | 283 | 118 | 361 | 2.62e-32 | 122 |
| MS.gene017787.t1 | MTR_2g042370 | 30.556 | 252 | 166 | 5 | 40 | 288 | 112 | 357 | 4.10e-27 | 108 |
| MS.gene017787.t1 | MTR_2g042430 | 29.675 | 246 | 167 | 4 | 40 | 284 | 124 | 364 | 9.85e-27 | 107 |
| MS.gene017787.t1 | MTR_2g042420 | 28.800 | 250 | 172 | 4 | 40 | 288 | 105 | 349 | 8.27e-26 | 105 |
| MS.gene017787.t1 | MTR_1g075865 | 41.509 | 106 | 61 | 1 | 81 | 186 | 7 | 111 | 3.57e-23 | 92.8 |
| MS.gene017787.t1 | MTR_4g112840 | 46.667 | 90 | 48 | 0 | 110 | 199 | 63 | 152 | 3.24e-22 | 91.3 |
| MS.gene017787.t1 | MTR_8g074320 | 37.692 | 130 | 76 | 3 | 30 | 156 | 95 | 222 | 4.53e-18 | 81.3 |
| MS.gene017787.t1 | MTR_2g058430 | 43.038 | 79 | 45 | 0 | 24 | 102 | 52 | 130 | 2.44e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017787.t1 | AT3G57030 | 65.704 | 277 | 93 | 2 | 14 | 288 | 98 | 374 | 8.26e-130 | 374 |
| MS.gene017787.t1 | AT1G08470 | 53.901 | 282 | 122 | 3 | 14 | 288 | 109 | 389 | 4.98e-98 | 293 |
| MS.gene017787.t1 | AT2G41300 | 52.174 | 276 | 127 | 3 | 12 | 285 | 118 | 390 | 2.84e-93 | 281 |
| MS.gene017787.t1 | AT5G22020 | 52.060 | 267 | 121 | 3 | 26 | 288 | 132 | 395 | 6.67e-93 | 280 |
| MS.gene017787.t1 | AT5G22020 | 52.060 | 267 | 121 | 3 | 26 | 288 | 132 | 395 | 6.67e-93 | 280 |
| MS.gene017787.t1 | AT5G22020 | 52.060 | 267 | 121 | 3 | 26 | 288 | 132 | 395 | 6.67e-93 | 280 |
| MS.gene017787.t1 | AT3G57010 | 47.552 | 286 | 142 | 5 | 3 | 285 | 87 | 367 | 9.24e-83 | 254 |
| MS.gene017787.t1 | AT2G41290 | 49.825 | 285 | 132 | 6 | 14 | 288 | 93 | 376 | 1.59e-82 | 253 |
| MS.gene017787.t1 | AT3G57020 | 47.203 | 286 | 143 | 5 | 3 | 285 | 86 | 366 | 4.99e-82 | 252 |
| MS.gene017787.t1 | AT3G57020 | 48.837 | 258 | 129 | 3 | 31 | 285 | 95 | 352 | 1.51e-78 | 242 |
| MS.gene017787.t1 | AT3G59530 | 45.560 | 259 | 128 | 3 | 26 | 283 | 146 | 392 | 3.86e-77 | 240 |
| MS.gene017787.t1 | AT3G59530 | 45.560 | 259 | 128 | 3 | 26 | 283 | 146 | 392 | 3.86e-77 | 240 |
| MS.gene017787.t1 | AT3G59530 | 45.560 | 259 | 128 | 3 | 26 | 283 | 146 | 392 | 3.86e-77 | 240 |
| MS.gene017787.t1 | AT1G74020 | 38.023 | 263 | 129 | 5 | 29 | 288 | 96 | 327 | 2.55e-50 | 169 |
| MS.gene017787.t1 | AT1G74010 | 37.643 | 263 | 130 | 5 | 29 | 288 | 94 | 325 | 1.95e-49 | 166 |
| MS.gene017787.t1 | AT1G74000 | 36.226 | 265 | 131 | 6 | 29 | 288 | 98 | 329 | 1.53e-45 | 156 |
| MS.gene017787.t1 | AT3G51440 | 38.596 | 171 | 99 | 4 | 30 | 199 | 113 | 278 | 8.45e-29 | 113 |
| MS.gene017787.t1 | AT3G51430 | 33.945 | 218 | 128 | 7 | 30 | 237 | 113 | 324 | 8.48e-28 | 110 |
| MS.gene017787.t1 | AT3G51430 | 33.333 | 219 | 130 | 5 | 30 | 237 | 113 | 326 | 1.91e-27 | 109 |
| MS.gene017787.t1 | AT3G51420 | 32.877 | 219 | 131 | 5 | 30 | 237 | 113 | 326 | 3.09e-27 | 109 |
| MS.gene017787.t1 | AT3G51450 | 34.314 | 204 | 118 | 6 | 30 | 232 | 113 | 301 | 6.41e-26 | 105 |
Find 73 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTCAGAAGGGCAGTTT+TGG | 0.258450 | 7.3:-18778625 | MS.gene017787:CDS |
| CAAAGATGGTTCATTTCTTC+TGG | 0.289224 | 7.3:-18778756 | MS.gene017787:CDS |
| ATTCTGAGGCTTTGGCTTCA+TGG | 0.293429 | 7.3:-18778710 | MS.gene017787:CDS |
| TCTTCCCTTCACAATCTTCC+AGG | 0.315508 | 7.3:+18778432 | None:intergenic |
| GAAGACATCCACTTCGTAAA+AGG | 0.316670 | 7.3:+18778578 | None:intergenic |
| TAGCCGAAACCTCGATTTGC+AGG | 0.335341 | 7.3:-18778733 | MS.gene017787:CDS |
| AGTGGTGAAGTTACCTTCTC+TGG | 0.362490 | 7.3:+18779600 | None:intergenic |
| TTTGCAGGATTCTGAGGCTT+TGG | 0.376258 | 7.3:-18778718 | MS.gene017787:CDS |
| TGAATTTCTCCTTATATTGT+CGG | 0.380918 | 7.3:+18778640 | None:intergenic |
| GAAGCCGTTGCAAGCGTTGT+TGG | 0.400226 | 7.3:-18778513 | MS.gene017787:CDS |
| CTTTCACTTCACCAATGACT+TGG | 0.405228 | 7.3:-18779675 | MS.gene017787:CDS |
| AGTGGATGTCTTCTAATCTC+TGG | 0.412498 | 7.3:-18778568 | MS.gene017787:CDS |
| CTCAACGTCGTAGGACCTGC+AGG | 0.415420 | 7.3:-18779740 | MS.gene017787:CDS |
| CTTATATTGTCGGCAAAACC+TGG | 0.416007 | 7.3:+18778650 | None:intergenic |
| AATCCTGCAAATCGAGGTTT+CGG | 0.418573 | 7.3:+18778730 | None:intergenic |
| TTGCTTAAAGCAACACCATT+GGG | 0.429285 | 7.3:+18778776 | None:intergenic |
| CCGGAGTTGGAGTATATTTG+TGG | 0.436645 | 7.3:-18779830 | MS.gene017787:CDS |
| TTCACTGATGTCCAAGTCAT+TGG | 0.437367 | 7.3:+18779664 | None:intergenic |
| GTATCGACTTGGCCAACATT+AGG | 0.446245 | 7.3:+18778686 | None:intergenic |
| TACTCCAACTCCGGTGCGAA+TGG | 0.448701 | 7.3:+18779839 | None:intergenic |
| GCTATAAAGCTGAGTGATGA+AGG | 0.452061 | 7.3:-18778470 | MS.gene017787:CDS |
| TGGCTTCATGGACCTAATGT+TGG | 0.454561 | 7.3:-18778698 | MS.gene017787:CDS |
| GGTGTTGCTTTAAGCAAAGA+TGG | 0.456261 | 7.3:-18778770 | MS.gene017787:CDS |
| TATATTTCTGATGCCTACCT+TGG | 0.457019 | 7.3:-18779764 | MS.gene017787:CDS |
| CCTCGATTTGCAGGATTCTG+AGG | 0.468038 | 7.3:-18778724 | MS.gene017787:CDS |
| GCGTCCATTCGCACCGGAGT+TGG | 0.475804 | 7.3:-18779843 | MS.gene017787:CDS |
| AAGAGAAAGATGGAAAACTT+TGG | 0.476666 | 7.3:-18778385 | MS.gene017787:CDS |
| AGGGGAAATATTAGAAAGCC+TGG | 0.482098 | 7.3:-18778450 | MS.gene017787:CDS |
| CAAGCTCAGTTTACCAGAGA+AGG | 0.490093 | 7.3:-18779613 | MS.gene017787:intron |
| AAACTATAAACACCAATGTA+AGG | 0.492649 | 7.3:+18778344 | None:intergenic |
| GTCCTACGACGTTGAGGCCA+AGG | 0.495996 | 7.3:+18779747 | None:intergenic |
| CAAGTCATTGGTGAAGTGAA+AGG | 0.503899 | 7.3:+18779676 | None:intergenic |
| TGACTGAAATTCTGCCTGGT+AGG | 0.509398 | 7.3:-18780009 | MS.gene017787:intron |
| GAAGTAAAGGTCTTATTAAG+TGG | 0.510585 | 7.3:-18778809 | MS.gene017787:CDS |
| GTGGATGTCTTCTAATCTCT+GGG | 0.517275 | 7.3:-18778567 | MS.gene017787:CDS |
| CGGAGTTGGAGTATATTTGT+GGG | 0.518755 | 7.3:-18779829 | MS.gene017787:CDS |
| TTTGCTTAAAGCAACACCAT+TGG | 0.519201 | 7.3:+18778775 | None:intergenic |
| TATATTTGTGGGAGGCCACT+AGG | 0.529369 | 7.3:-18779818 | MS.gene017787:CDS |
| AGTGAAGTGGAAGAGAAAGA+TGG | 0.540337 | 7.3:-18778395 | MS.gene017787:CDS |
| AGCTTTATAGCTGCAGCATG+AGG | 0.541139 | 7.3:+18778482 | None:intergenic |
| TAAGTCGACTAAAGAAGTAA+AGG | 0.548933 | 7.3:-18778822 | MS.gene017787:CDS |
| GAAAGATGGAAAACTTTGGA+TGG | 0.549433 | 7.3:-18778381 | MS.gene017787:CDS |
| ATTGAAGTTCATCAGTGAAG+TGG | 0.549801 | 7.3:-18778408 | MS.gene017787:CDS |
| AAGTCATTGGTGAAGTGAAA+GGG | 0.553850 | 7.3:+18779677 | None:intergenic |
| ACTCTCAGTGGAGACAAGAC+TGG | 0.559193 | 7.3:-18778863 | MS.gene017787:CDS |
| TTATCAAACTTTAGTCCTAG+TGG | 0.560456 | 7.3:+18779803 | None:intergenic |
| TCAACGTCGTAGGACCTGCA+GGG | 0.563338 | 7.3:-18779739 | MS.gene017787:CDS |
| CATTGGTGAAGTGAAAGGGC+TGG | 0.572810 | 7.3:+18779681 | None:intergenic |
| GCTTTGACTGAAATTCTGCC+TGG | 0.573929 | 7.3:-18780013 | MS.gene017787:CDS |
| TCATGCAAGCAAAACCTACC+AGG | 0.576463 | 7.3:+18779995 | None:intergenic |
| CTATAAAGCTGAGTGATGAA+GGG | 0.586876 | 7.3:-18778469 | MS.gene017787:CDS |
| GAACAGCAAAAGTATCGACT+TGG | 0.589428 | 7.3:+18778675 | None:intergenic |
| CCACAAATATACTCCAACTC+CGG | 0.590022 | 7.3:+18779830 | None:intergenic |
| TCAGGTAGCAACTGAAGCTG+AGG | 0.591033 | 7.3:-18779705 | MS.gene017787:CDS |
| GTCGCCAACAACGCTTGCAA+CGG | 0.597981 | 7.3:+18778509 | None:intergenic |
| CAACGTCGTAGGACCTGCAG+GGG | 0.602016 | 7.3:-18779738 | MS.gene017787:CDS |
| AATATAAGGAGAAATTCAGA+AGG | 0.602446 | 7.3:-18778635 | MS.gene017787:CDS |
| GAAAGCCTGGAAGATTGTGA+AGG | 0.604737 | 7.3:-18778437 | MS.gene017787:CDS |
| AGCTTCAGTTGCTACCTGAG+TGG | 0.606041 | 7.3:+18779709 | None:intergenic |
| CTGTGTGCGTCCATTCGCAC+CGG | 0.607037 | 7.3:-18779849 | MS.gene017787:CDS |
| TATAAAGCTGAGTGATGAAG+GGG | 0.611274 | 7.3:-18778468 | MS.gene017787:CDS |
| CATATGCTTGTAACTCTCAG+TGG | 0.627616 | 7.3:-18778875 | MS.gene017787:CDS |
| CTGCAGGTCCTACGACGTTG+AGG | 0.627691 | 7.3:+18779741 | None:intergenic |
| CCTCAGAATCCTGCAAATCG+AGG | 0.632523 | 7.3:+18778724 | None:intergenic |
| TCAGTGTTAATGCCTTACAT+TGG | 0.635695 | 7.3:-18778356 | MS.gene017787:CDS |
| TACCTTGGCCTCAACGTCGT+AGG | 0.642314 | 7.3:-18779749 | MS.gene017787:CDS |
| AAAGCCTGGAAGATTGTGAA+GGG | 0.647318 | 7.3:-18778436 | MS.gene017787:CDS |
| CAGGTAGCAACTGAAGCTGA+GGG | 0.648267 | 7.3:-18779704 | MS.gene017787:CDS |
| AGTTGGAGTATATTTGTGGG+AGG | 0.653488 | 7.3:-18779826 | MS.gene017787:CDS |
| TACGACGTTGAGGCCAAGGT+AGG | 0.668648 | 7.3:+18779751 | None:intergenic |
| TCAGTGGAGACAAGACTGGA+CGG | 0.686980 | 7.3:-18778859 | MS.gene017787:CDS |
| ATATAAGGAGAAATTCAGAA+GGG | 0.701748 | 7.3:-18778634 | MS.gene017787:CDS |
| AACGTCGTAGGACCTGCAGG+GGG | 0.727874 | 7.3:-18779737 | MS.gene017787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAATAATCAGTTATA+TGG | + | chr7.3:18778411-18778430 | None:intergenic | 15.0% |
| !! | TATTCTTAACATAAATCAAT+AGG | + | chr7.3:18779179-18779198 | None:intergenic | 15.0% |
| !! | AAAGTTAACAAATCTTTAGT+TGG | + | chr7.3:18779038-18779057 | None:intergenic | 20.0% |
| !! | AAGTTAACAAATCTTTAGTT+GGG | + | chr7.3:18779037-18779056 | None:intergenic | 20.0% |
| !! | AGTGTTAACTTAAAAACTAT+AGG | + | chr7.3:18779149-18779168 | None:intergenic | 20.0% |
| !! | CTAAAGTTTGATAAGAAAAA+TGG | - | chr7.3:18778574-18778593 | MS.gene017787:CDS | 20.0% |
| !! | GATTGAAGAAAATAATATCA+AGG | - | chr7.3:18779308-18779327 | MS.gene017787:intron | 20.0% |
| !! | GTGTTAACTTAAAAACTATA+GGG | + | chr7.3:18779148-18779167 | None:intergenic | 20.0% |
| !! | TCAGAATTGTTTAAATGAAA+AGG | + | chr7.3:18778890-18778909 | None:intergenic | 20.0% |
| !! | TGTTAACTTAAAAACTATAG+GGG | + | chr7.3:18779147-18779166 | None:intergenic | 20.0% |
| !! | TTCACATTTGTAACATTAAA+TGG | + | chr7.3:18778949-18778968 | None:intergenic | 20.0% |
| !!! | ACAAGATTGCTTTATTTTTA+CGG | + | chr7.3:18779062-18779081 | None:intergenic | 20.0% |
| !!! | AGAAATTTTGATCTATATGT+TGG | - | chr7.3:18779450-18779469 | MS.gene017787:intron | 20.0% |
| ! | AAACTATAAACACCAATGTA+AGG | + | chr7.3:18780027-18780046 | None:intergenic | 25.0% |
| ! | AATATAAGGAGAAATTCAGA+AGG | - | chr7.3:18779733-18779752 | MS.gene017787:CDS | 25.0% |
| ! | ATAGACAAATATTATCATGC+TGG | + | chr7.3:18779387-18779406 | None:intergenic | 25.0% |
| ! | ATATAAGGAGAAATTCAGAA+GGG | - | chr7.3:18779734-18779753 | MS.gene017787:CDS | 25.0% |
| ! | GTTAACTTAAAAACTATAGG+GGG | + | chr7.3:18779146-18779165 | None:intergenic | 25.0% |
| ! | GTTCATACTCAATAATAATG+TGG | + | chr7.3:18778841-18778860 | None:intergenic | 25.0% |
| ! | TGAATTTCTCCTTATATTGT+CGG | + | chr7.3:18779731-18779750 | None:intergenic | 25.0% |
| !!! | ACATTAAATGGATTGAATGT+TGG | + | chr7.3:18778937-18778956 | None:intergenic | 25.0% |
| AAGAGAAAGATGGAAAACTT+TGG | - | chr7.3:18779983-18780002 | MS.gene017787:intron | 30.0% | |
| ATGGTTAACTATGTTGTATG+AGG | - | chr7.3:18779226-18779245 | MS.gene017787:intron | 30.0% | |
| CATAGTTAACCATTCCAAAA+CGG | + | chr7.3:18779219-18779238 | None:intergenic | 30.0% | |
| GAAAACTGTGCAATTATCTT+AGG | - | chr7.3:18779330-18779349 | MS.gene017787:intron | 30.0% | |
| TAAGTCGACTAAAGAAGTAA+AGG | - | chr7.3:18779546-18779565 | MS.gene017787:intron | 30.0% | |
| TATGAGTTAGAGTAATGTCA+TGG | + | chr7.3:18778439-18778458 | None:intergenic | 30.0% | |
| TGGTTAACTATGTTGTATGA+GGG | - | chr7.3:18779227-18779246 | MS.gene017787:intron | 30.0% | |
| TTATCAAACTTTAGTCCTAG+TGG | + | chr7.3:18778568-18778587 | None:intergenic | 30.0% | |
| TTTCTATAATCAACTCTGTC+TGG | - | chr7.3:18778804-18778823 | MS.gene017787:CDS | 30.0% | |
| ! | AAAAATCTCCTTTTACGAAG+TGG | - | chr7.3:18779782-18779801 | MS.gene017787:CDS | 30.0% |
| !! | GAAGTAAAGGTCTTATTAAG+TGG | - | chr7.3:18779559-18779578 | MS.gene017787:intron | 30.0% |
| !! | TTTGATTTGACTTGAACAAG+TGG | + | chr7.3:18779274-18779293 | None:intergenic | 30.0% |
| !!! | CTTCGTAAAAGGAGATTTTT+TGG | + | chr7.3:18779782-18779801 | None:intergenic | 30.0% |
| AAGTCATTGGTGAAGTGAAA+GGG | + | chr7.3:18778694-18778713 | None:intergenic | 35.0% | |
| AGAAAATAGCCGTTGTTTAG+TGG | + | chr7.3:18778789-18778808 | None:intergenic | 35.0% | |
| ATTGAAGTTCATCAGTGAAG+TGG | - | chr7.3:18779960-18779979 | MS.gene017787:intron | 35.0% | |
| CAAAGATGGTTCATTTCTTC+TGG | - | chr7.3:18779612-18779631 | MS.gene017787:intron | 35.0% | |
| CAACACCATTGGGAAAAAAA+AGG | + | chr7.3:18779585-18779604 | None:intergenic | 35.0% | |
| CTATAAAGCTGAGTGATGAA+GGG | - | chr7.3:18779899-18779918 | MS.gene017787:intron | 35.0% | |
| CTCTAACTCATAGCTACATT+AGG | - | chr7.3:18778447-18778466 | MS.gene017787:CDS | 35.0% | |
| GAAAGATGGAAAACTTTGGA+TGG | - | chr7.3:18779987-18780006 | MS.gene017787:intron | 35.0% | |
| GTAACTTCACCACTAAACAA+CGG | - | chr7.3:18778777-18778796 | MS.gene017787:CDS | 35.0% | |
| TATAAAGCTGAGTGATGAAG+GGG | - | chr7.3:18779900-18779919 | MS.gene017787:intron | 35.0% | |
| TCAGTGTTAATGCCTTACAT+TGG | - | chr7.3:18780012-18780031 | MS.gene017787:CDS | 35.0% | |
| TTGCTTAAAGCAACACCATT+GGG | + | chr7.3:18779595-18779614 | None:intergenic | 35.0% | |
| TTTGCTTAAAGCAACACCAT+TGG | + | chr7.3:18779596-18779615 | None:intergenic | 35.0% | |
| ! | AAATTCAGAAGGGCAGTTTT+GGG | - | chr7.3:18779744-18779763 | MS.gene017787:CDS | 35.0% |
| ! | AGTGCAATTTTCTCTATACG+TGG | + | chr7.3:18779088-18779107 | None:intergenic | 35.0% |
| ! | ATTCCGTTGTATGATTTGCA+AGG | - | chr7.3:18778491-18778510 | MS.gene017787:CDS | 35.0% |
| ! | TATATTTCTGATGCCTACCT+TGG | - | chr7.3:18778604-18778623 | MS.gene017787:CDS | 35.0% |
| ! | TTATCCTGATTTAGCCGTTT+TGG | - | chr7.3:18779202-18779221 | MS.gene017787:intron | 35.0% |
| !! | GTGTTGTTTCAAGAAATCGT+AGG | + | chr7.3:18779118-18779137 | None:intergenic | 35.0% |
| !!! | AATGCTGTTTTACTCGAAAG+TGG | - | chr7.3:18778968-18778987 | MS.gene017787:intron | 35.0% |
| AAAGCCTGGAAGATTGTGAA+GGG | - | chr7.3:18779932-18779951 | MS.gene017787:intron | 40.0% | |
| AATCCTGCAAATCGAGGTTT+CGG | + | chr7.3:18779641-18779660 | None:intergenic | 40.0% | |
| AGGGGAAATATTAGAAAGCC+TGG | - | chr7.3:18779918-18779937 | MS.gene017787:intron | 40.0% | |
| AGTGAAGTGGAAGAGAAAGA+TGG | - | chr7.3:18779973-18779992 | MS.gene017787:intron | 40.0% | |
| AGTGGATGTCTTCTAATCTC+TGG | - | chr7.3:18779800-18779819 | MS.gene017787:CDS | 40.0% | |
| AGTTGGAGTATATTTGTGGG+AGG | - | chr7.3:18778542-18778561 | MS.gene017787:CDS | 40.0% | |
| CAAGTCATTGGTGAAGTGAA+AGG | + | chr7.3:18778695-18778714 | None:intergenic | 40.0% | |
| CATATGCTTGTAACTCTCAG+TGG | - | chr7.3:18779493-18779512 | MS.gene017787:intron | 40.0% | |
| CATTCCAAAACGGCTAAATC+AGG | + | chr7.3:18779209-18779228 | None:intergenic | 40.0% | |
| CCACAAATATACTCCAACTC+CGG | + | chr7.3:18778541-18778560 | None:intergenic | 40.0% | |
| CGACCTTGCAAATCATACAA+CGG | + | chr7.3:18778497-18778516 | None:intergenic | 40.0% | |
| CGGAGTTGGAGTATATTTGT+GGG | - | chr7.3:18778539-18778558 | MS.gene017787:CDS | 40.0% | |
| CTTATATTGTCGGCAAAACC+TGG | + | chr7.3:18779721-18779740 | None:intergenic | 40.0% | |
| CTTTCACTTCACCAATGACT+TGG | - | chr7.3:18778693-18778712 | MS.gene017787:CDS | 40.0% | |
| GAAGACATCCACTTCGTAAA+AGG | + | chr7.3:18779793-18779812 | None:intergenic | 40.0% | |
| GCTATAAAGCTGAGTGATGA+AGG | - | chr7.3:18779898-18779917 | MS.gene017787:intron | 40.0% | |
| GTGGATGTCTTCTAATCTCT+GGG | - | chr7.3:18779801-18779820 | MS.gene017787:CDS | 40.0% | |
| TTCACTGATGTCCAAGTCAT+TGG | + | chr7.3:18778707-18778726 | None:intergenic | 40.0% | |
| ! | CAGGTTTTGCCGACAATATA+AGG | - | chr7.3:18779719-18779738 | MS.gene017787:CDS | 40.0% |
| ! | CGTTGTATGATTTGCAAGGT+CGG | - | chr7.3:18778495-18778514 | MS.gene017787:CDS | 40.0% |
| ! | GAAATTCAGAAGGGCAGTTT+TGG | - | chr7.3:18779743-18779762 | MS.gene017787:CDS | 40.0% |
| !! | GAACAGCAAAAGTATCGACT+TGG | + | chr7.3:18779696-18779715 | None:intergenic | 40.0% |
| !! | GGTGTTGCTTTAAGCAAAGA+TGG | - | chr7.3:18779598-18779617 | MS.gene017787:intron | 40.0% |
| !!! | AGTGGCCTTTTTTTTCCCAA+TGG | - | chr7.3:18779577-18779596 | MS.gene017787:intron | 40.0% |
| !!! | CTGATTTAGCCGTTTTGGAA+TGG | - | chr7.3:18779207-18779226 | MS.gene017787:intron | 40.0% |
| !!! | GATACTTTTGCTGTTCTTCC+AGG | - | chr7.3:18779700-18779719 | MS.gene017787:CDS | 40.0% |
| AGTGGTGAAGTTACCTTCTC+TGG | + | chr7.3:18778771-18778790 | None:intergenic | 45.0% | |
| CAAGCTCAGTTTACCAGAGA+AGG | - | chr7.3:18778755-18778774 | MS.gene017787:CDS | 45.0% | |
| CCCAGTCAACAAATGTTCGT+CGG | + | chr7.3:18779005-18779024 | None:intergenic | 45.0% | |
| CCGGAGTTGGAGTATATTTG+TGG | - | chr7.3:18778538-18778557 | MS.gene017787:CDS | 45.0% | |
| GAAAGCCTGGAAGATTGTGA+AGG | - | chr7.3:18779931-18779950 | MS.gene017787:intron | 45.0% | |
| GCTTTGACTGAAATTCTGCC+TGG | - | chr7.3:18778355-18778374 | MS.gene017787:CDS | 45.0% | |
| TATATTTGTGGGAGGCCACT+AGG | - | chr7.3:18778550-18778569 | MS.gene017787:CDS | 45.0% | |
| TCATGCAAGCAAAACCTACC+AGG | + | chr7.3:18778376-18778395 | None:intergenic | 45.0% | |
| TCTTCCCTTCACAATCTTCC+AGG | + | chr7.3:18779939-18779958 | None:intergenic | 45.0% | |
| TGACTGAAATTCTGCCTGGT+AGG | - | chr7.3:18778359-18778378 | MS.gene017787:CDS | 45.0% | |
| TGCTTGCATGATGTGCAGAA+AGG | - | chr7.3:18778385-18778404 | MS.gene017787:CDS | 45.0% | |
| TGGCTTCATGGACCTAATGT+TGG | - | chr7.3:18779670-18779689 | MS.gene017787:CDS | 45.0% | |
| ! | ACCGACGAACATTTGTTGAC+TGG | - | chr7.3:18779001-18779020 | MS.gene017787:intron | 45.0% |
| ! | AGCTTTATAGCTGCAGCATG+AGG | + | chr7.3:18779889-18779908 | None:intergenic | 45.0% |
| ! | CCGACGAACATTTGTTGACT+GGG | - | chr7.3:18779002-18779021 | MS.gene017787:intron | 45.0% |
| !! | ATTCTGAGGCTTTGGCTTCA+TGG | - | chr7.3:18779658-18779677 | MS.gene017787:CDS | 45.0% |
| !! | GTATCGACTTGGCCAACATT+AGG | + | chr7.3:18779685-18779704 | None:intergenic | 45.0% |
| !! | TTTGCAGGATTCTGAGGCTT+TGG | - | chr7.3:18779650-18779669 | MS.gene017787:CDS | 45.0% |
| !!! | TGTTGGTCACTTTTGTCTGC+AGG | - | chr7.3:18779467-18779486 | MS.gene017787:intron | 45.0% |
| ACTCTCAGTGGAGACAAGAC+TGG | - | chr7.3:18779505-18779524 | MS.gene017787:intron | 50.0% | |
| AGCTTCAGTTGCTACCTGAG+TGG | + | chr7.3:18778662-18778681 | None:intergenic | 50.0% | |
| CAGGTAGCAACTGAAGCTGA+GGG | - | chr7.3:18778664-18778683 | MS.gene017787:CDS | 50.0% | |
| CATTGGTGAAGTGAAAGGGC+TGG | + | chr7.3:18778690-18778709 | None:intergenic | 50.0% | |
| CCTCAGAATCCTGCAAATCG+AGG | + | chr7.3:18779647-18779666 | None:intergenic | 50.0% | |
| TCAGGTAGCAACTGAAGCTG+AGG | - | chr7.3:18778663-18778682 | MS.gene017787:CDS | 50.0% | |
| TCAGTGGAGACAAGACTGGA+CGG | - | chr7.3:18779509-18779528 | MS.gene017787:intron | 50.0% | |
| ! | CCTCGATTTGCAGGATTCTG+AGG | - | chr7.3:18779644-18779663 | MS.gene017787:CDS | 50.0% |
| ! | TAGCCGAAACCTCGATTTGC+AGG | - | chr7.3:18779635-18779654 | MS.gene017787:CDS | 50.0% |
| GTCGCCAACAACGCTTGCAA+CGG | + | chr7.3:18779862-18779881 | None:intergenic | 55.0% | |
| TACCTTGGCCTCAACGTCGT+AGG | - | chr7.3:18778619-18778638 | MS.gene017787:CDS | 55.0% | |
| TACGACGTTGAGGCCAAGGT+AGG | + | chr7.3:18778620-18778639 | None:intergenic | 55.0% | |
| TACTCCAACTCCGGTGCGAA+TGG | + | chr7.3:18778532-18778551 | None:intergenic | 55.0% | |
| TCAACGTCGTAGGACCTGCA+GGG | - | chr7.3:18778629-18778648 | MS.gene017787:CDS | 55.0% | |
| ! | GAAGCCGTTGCAAGCGTTGT+TGG | - | chr7.3:18779855-18779874 | MS.gene017787:CDS | 55.0% |
| AACGTCGTAGGACCTGCAGG+GGG | - | chr7.3:18778631-18778650 | MS.gene017787:CDS | 60.0% | |
| CAACGTCGTAGGACCTGCAG+GGG | - | chr7.3:18778630-18778649 | MS.gene017787:CDS | 60.0% | |
| CTCAACGTCGTAGGACCTGC+AGG | - | chr7.3:18778628-18778647 | MS.gene017787:CDS | 60.0% | |
| CTGCAGGTCCTACGACGTTG+AGG | + | chr7.3:18778630-18778649 | None:intergenic | 60.0% | |
| CTGTGTGCGTCCATTCGCAC+CGG | - | chr7.3:18778519-18778538 | MS.gene017787:CDS | 60.0% | |
| GTCCTACGACGTTGAGGCCA+AGG | + | chr7.3:18778624-18778643 | None:intergenic | 60.0% | |
| CGTAGGACCTGCAGGGGGTT+TGG | - | chr7.3:18778636-18778655 | MS.gene017787:CDS | 65.0% | |
| GCGTCCATTCGCACCGGAGT+TGG | - | chr7.3:18778525-18778544 | MS.gene017787:CDS | 65.0% | |
| TGAGTGGCCAAACCCCCTGC+AGG | + | chr7.3:18778646-18778665 | None:intergenic | 65.0% | |
| TGCAGGGGGTTTGGCCACTC+AGG | - | chr7.3:18778645-18778664 | MS.gene017787:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 18778340 | 18780050 | 18778340 | ID=MS.gene017787 |
| chr7.3 | mRNA | 18778340 | 18780050 | 18778340 | ID=MS.gene017787.t1;Parent=MS.gene017787 |
| chr7.3 | exon | 18780010 | 18780050 | 18780010 | ID=MS.gene017787.t1.exon1;Parent=MS.gene017787.t1 |
| chr7.3 | CDS | 18780010 | 18780050 | 18780010 | ID=cds.MS.gene017787.t1;Parent=MS.gene017787.t1 |
| chr7.3 | exon | 18779614 | 18779877 | 18779614 | ID=MS.gene017787.t1.exon2;Parent=MS.gene017787.t1 |
| chr7.3 | CDS | 18779614 | 18779877 | 18779614 | ID=cds.MS.gene017787.t1;Parent=MS.gene017787.t1 |
| chr7.3 | exon | 18778340 | 18778901 | 18778340 | ID=MS.gene017787.t1.exon3;Parent=MS.gene017787.t1 |
| chr7.3 | CDS | 18778340 | 18778901 | 18778340 | ID=cds.MS.gene017787.t1;Parent=MS.gene017787.t1 |
| Gene Sequence |
| Protein sequence |
