AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018284


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018284.t1 MTR_6g015860 95.666 323 10 1 1 319 1 323 0.0 623
MS.gene018284.t1 MTR_7g015870 79.208 303 63 0 8 310 16 318 0.0 503
MS.gene018284.t1 MTR_7g015870 79.070 301 63 0 5 305 9 309 2.77e-180 501
MS.gene018284.t1 MTR_2g032610 47.508 301 153 3 5 302 17 315 1.65e-100 298
MS.gene018284.t1 MTR_8g019480 46.847 333 147 7 5 311 21 349 2.40e-92 279
MS.gene018284.t1 MTR_3g104810 41.867 332 165 4 5 311 20 348 5.54e-81 249
MS.gene018284.t1 MTR_5g073040 28.522 291 181 7 2 286 25 294 6.56e-29 113
MS.gene018284.t1 MTR_5g073040 23.980 196 140 5 15 206 129 319 1.28e-11 65.1
MS.gene018284.t1 MTR_1g097890 30.822 292 160 11 21 308 53 306 2.27e-28 112
MS.gene018284.t1 MTR_6g034515 25.979 281 173 7 30 300 80 335 2.37e-25 104
MS.gene018284.t1 MTR_6g034515 26.437 174 113 4 31 198 174 338 6.97e-12 65.9
MS.gene018284.t1 MTR_8g098240 28.125 288 177 7 21 303 322 584 1.35e-24 104
MS.gene018284.t1 MTR_8g098240 29.444 180 114 5 17 194 412 580 1.50e-13 71.6
MS.gene018284.t1 MTR_3g107510 29.966 297 176 10 21 311 128 398 3.10e-24 102
MS.gene018284.t1 MTR_8g092080 30.293 307 173 11 5 308 39 307 5.26e-23 97.4
MS.gene018284.t1 MTR_1g012030 27.491 291 183 9 21 305 141 409 1.25e-20 92.0
MS.gene018284.t1 MTR_1g012030 26.776 183 125 4 21 201 235 410 5.44e-13 69.7
MS.gene018284.t1 MTR_4g114320 25.926 297 186 11 21 310 129 398 4.26e-20 90.1
MS.gene018284.t1 MTR_4g012850 25.084 299 197 12 21 311 18 297 1.46e-19 87.4
MS.gene018284.t1 MTR_7g109135 29.101 189 115 4 33 212 40 218 4.59e-17 79.0
MS.gene018284.t1 MTR_7g109135 29.101 189 115 4 33 212 61 239 6.27e-17 79.0
MS.gene018284.t1 MTR_2g102010 24.315 292 195 8 21 304 19 292 1.28e-16 79.3
MS.gene018284.t1 MTR_7g109135 29.101 189 115 4 33 212 139 317 1.78e-16 79.0
MS.gene018284.t1 MTR_7g109135 23.529 306 205 11 13 305 16 305 2.15e-15 75.9
MS.gene018284.t1 MTR_5g009500 25.974 308 196 8 18 303 38 335 2.15e-16 79.0
MS.gene018284.t1 MTR_8g027975 23.794 311 205 6 18 305 51 352 3.08e-16 79.0
MS.gene018284.t1 MTR_3g025800 24.837 306 180 9 31 304 42 329 3.35e-16 78.6
MS.gene018284.t1 MTR_2g436930 22.559 297 192 7 33 300 31 318 6.07e-16 77.8
MS.gene018284.t1 MTR_2g436930 25.118 211 136 5 109 304 4 207 5.35e-11 63.2
MS.gene018284.t1 MTR_4g088545 24.878 205 136 5 107 303 1 195 6.36e-16 76.3
MS.gene018284.t1 MTR_3g098460 24.590 305 208 7 4 304 192 478 8.99e-16 78.2
MS.gene018284.t1 MTR_4g088545 24.878 205 136 5 107 303 1 195 1.05e-15 76.3
MS.gene018284.t1 MTR_4g088545 27.957 186 114 7 21 194 14 191 7.75e-11 62.0
MS.gene018284.t1 MTR_1g095780 23.826 298 190 8 19 312 526 790 1.50e-15 77.8
MS.gene018284.t1 MTR_4g057850 26.710 307 184 14 21 305 24 311 1.60e-15 76.3
MS.gene018284.t1 MTR_5g055410 25.263 285 190 8 33 308 37 307 1.82e-15 76.6
MS.gene018284.t1 MTR_5g055410 29.353 201 112 7 33 220 135 318 3.88e-15 75.5
MS.gene018284.t1 MTR_7g066690 25.253 297 189 9 29 312 29 305 6.18e-15 74.3
MS.gene018284.t1 MTR_7g064980 22.709 251 176 3 60 305 76 313 9.07e-15 74.3
MS.gene018284.t1 MTR_7g064980 29.448 163 104 7 17 175 133 288 6.97e-12 65.5
MS.gene018284.t1 MTR_1g087840 27.624 181 124 2 33 210 136 312 2.24e-14 72.8
MS.gene018284.t1 MTR_1g087840 23.958 288 184 11 33 305 35 302 1.79e-13 70.1
MS.gene018284.t1 MTR_7g109135 27.976 168 105 3 51 212 153 310 2.35e-14 72.8
MS.gene018284.t1 MTR_7g109135 23.934 305 198 9 13 305 16 298 1.95e-13 70.1
MS.gene018284.t1 MTR_7g084400 30.102 196 119 6 115 308 214 393 3.00e-14 73.6
MS.gene018284.t1 MTR_7g084400 28.409 176 108 5 31 201 323 485 2.72e-13 70.5
MS.gene018284.t1 MTR_7g084400 22.896 297 195 10 17 304 212 483 6.91e-13 69.3
MS.gene018284.t1 MTR_7g084400 30.102 196 119 6 115 308 208 387 3.72e-14 73.2
MS.gene018284.t1 MTR_4g018750 23.529 289 190 7 29 305 27 296 4.92e-14 71.6
MS.gene018284.t1 MTR_8g066975 26.056 284 179 9 32 300 23 290 7.29e-14 71.2
MS.gene018284.t1 MTR_8g066975 28.723 188 118 5 17 194 108 289 8.10e-12 65.1
MS.gene018284.t1 MTR_8g096050 26.857 175 121 4 29 201 333 502 1.15e-13 71.6
MS.gene018284.t1 MTR_8g096050 22.654 309 209 9 4 304 214 500 1.19e-13 71.6
MS.gene018284.t1 MTR_8g096050 28.095 210 127 7 115 318 228 419 1.32e-11 65.5
MS.gene018284.t1 MTR_1g090330 22.526 293 183 11 32 305 29 296 1.16e-13 70.9
MS.gene018284.t1 MTR_4g119770 20.946 296 200 5 33 300 30 319 1.49e-13 70.9
MS.gene018284.t1 MTR_4g119770 25.571 219 137 5 101 304 1 208 2.39e-11 64.3
MS.gene018284.t1 MTR_4g119770 26.000 200 136 3 7 194 119 318 8.18e-11 62.4
MS.gene018284.t1 MTR_8g076760 24.739 287 196 8 31 306 28 305 2.04e-13 70.1
MS.gene018284.t1 MTR_7g068340 25.000 288 178 10 33 311 103 361 3.12e-13 70.1
MS.gene018284.t1 MTR_5g030530 25.352 284 181 11 32 300 23 290 2.05e-12 67.0
MS.gene018284.t1 MTR_4g088545 24.823 282 175 11 21 283 14 277 3.18e-12 66.6
MS.gene018284.t1 MTR_1g088995 26.042 192 108 2 128 308 43 211 8.77e-12 64.3
MS.gene018284.t1 MTR_4g005330 26.347 167 115 4 28 194 122 280 9.81e-12 65.1
MS.gene018284.t1 MTR_4g005330 26.347 167 115 4 28 194 188 346 1.02e-11 65.5
MS.gene018284.t1 MTR_4g119770 25.571 219 137 5 101 304 1 208 1.09e-11 64.3
MS.gene018284.t1 MTR_1g088995 26.042 192 108 2 128 308 43 211 1.19e-11 65.1
MS.gene018284.t1 MTR_4g016730 25.882 255 150 10 62 311 140 360 2.99e-11 63.9
MS.gene018284.t1 MTR_6g091800 25.000 196 121 4 128 309 29 212 7.51e-11 62.0
MS.gene018284.t1 MTR_3g104500 25.521 192 125 5 17 201 141 321 7.70e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018284.t1 AT5G15640 75.974 308 72 2 5 310 16 323 3.10e-173 483
MS.gene018284.t1 AT5G15640 75.570 307 72 3 6 310 11 316 1.00e-168 471
MS.gene018284.t1 AT1G72820 46.505 329 150 6 5 311 19 343 3.00e-94 283
MS.gene018284.t1 AT1G72820 46.505 329 150 6 5 311 19 343 3.00e-94 283
MS.gene018284.t1 AT5G26200 44.272 323 157 6 5 311 27 342 1.15e-88 269
MS.gene018284.t1 AT1G07030 29.795 292 174 7 4 286 27 296 2.77e-31 120
MS.gene018284.t1 AT2G30160 29.066 289 171 7 29 305 54 320 2.21e-27 109
MS.gene018284.t1 AT2G30160 24.194 186 134 4 21 201 138 321 9.32e-11 62.4
MS.gene018284.t1 AT1G34065 30.375 293 164 11 22 311 78 333 2.99e-26 106
MS.gene018284.t1 AT1G34065 30.375 293 164 11 22 311 85 340 3.42e-26 106
MS.gene018284.t1 AT4G39460 29.097 299 172 10 13 308 52 313 9.37e-24 99.8
MS.gene018284.t1 AT4G39460 29.097 299 172 10 13 308 52 313 9.37e-24 99.8
MS.gene018284.t1 AT4G39460 29.097 299 172 10 13 308 52 313 9.37e-24 99.8
MS.gene018284.t1 AT5G42130 27.052 329 192 10 8 317 111 410 1.57e-23 100
MS.gene018284.t1 AT2G37890 27.273 253 163 7 60 305 93 331 1.37e-21 94.0
MS.gene018284.t1 AT2G37890 27.027 185 125 5 21 201 154 332 8.86e-13 68.6
MS.gene018284.t1 AT4G11440 25.163 306 207 7 1 303 314 600 2.26e-21 95.1
MS.gene018284.t1 AT4G11440 25.163 306 207 7 1 303 314 600 2.26e-21 95.1
MS.gene018284.t1 AT3G53940 25.490 255 169 5 60 307 121 361 3.03e-18 84.7
MS.gene018284.t1 AT3G53940 30.061 163 103 6 17 175 179 334 1.05e-13 71.6
MS.gene018284.t1 AT1G79900 24.068 295 188 11 32 319 31 296 4.39e-18 83.2
MS.gene018284.t1 AT4G01100 24.615 325 208 8 3 303 30 341 6.04e-18 83.6
MS.gene018284.t1 AT4G01100 26.531 196 131 5 120 310 45 232 9.68e-11 62.4
MS.gene018284.t1 AT4G32400 25.676 296 194 8 21 313 120 392 8.22e-18 83.6
MS.gene018284.t1 AT4G01100 24.579 297 191 6 30 303 5 291 9.78e-18 82.4
MS.gene018284.t1 AT5G51050 25.325 308 199 9 4 304 210 493 1.43e-17 83.6
MS.gene018284.t1 AT5G51050 28.718 195 117 6 115 305 224 400 2.57e-11 64.7
MS.gene018284.t1 AT2G35800 24.068 295 194 6 19 312 546 811 4.87e-17 82.4
MS.gene018284.t1 AT2G26360 23.891 293 190 7 17 304 110 374 5.87e-17 81.3
MS.gene018284.t1 AT5G01340 27.305 282 172 10 21 288 19 281 8.70e-17 79.7
MS.gene018284.t1 AT3G55640 25.914 301 194 10 21 309 44 327 2.27e-16 79.0
MS.gene018284.t1 AT3G55640 25.914 301 194 10 21 309 44 327 2.27e-16 79.0
MS.gene018284.t1 AT5G46800 27.148 291 176 10 32 303 23 296 2.36e-16 78.6
MS.gene018284.t1 AT5G46800 31.937 191 102 5 134 307 24 203 1.55e-14 73.2
MS.gene018284.t1 AT5G46800 25.258 194 120 5 17 194 108 292 4.90e-12 65.9
MS.gene018284.t1 AT5G46800 27.148 291 176 10 32 303 23 296 2.36e-16 78.6
MS.gene018284.t1 AT5G46800 31.937 191 102 5 134 307 24 203 1.55e-14 73.2
MS.gene018284.t1 AT5G46800 25.258 194 120 5 17 194 108 292 4.90e-12 65.9
MS.gene018284.t1 AT5G46800 27.148 291 176 10 32 303 23 296 2.36e-16 78.6
MS.gene018284.t1 AT5G46800 31.937 191 102 5 134 307 24 203 1.55e-14 73.2
MS.gene018284.t1 AT5G46800 25.258 194 120 5 17 194 108 292 4.90e-12 65.9
MS.gene018284.t1 AT1G14140 24.221 289 184 9 32 305 31 299 3.30e-16 78.2
MS.gene018284.t1 AT3G54110 24.739 287 187 6 29 304 27 295 4.46e-16 77.8
MS.gene018284.t1 AT4G01100 24.633 341 202 11 3 303 30 355 4.57e-16 78.6
MS.gene018284.t1 AT2G47490 25.874 286 180 9 33 305 33 299 1.48e-15 76.3
MS.gene018284.t1 AT2G47490 25.000 192 125 4 29 211 129 310 6.22e-13 68.9
MS.gene018284.t1 AT5G66380 27.055 292 190 10 30 309 23 303 4.63e-15 75.1
MS.gene018284.t1 AT5G07320 22.939 279 189 8 33 309 225 479 9.50e-15 75.1
MS.gene018284.t1 AT3G51870 27.181 298 175 12 33 319 107 373 1.17e-14 74.3
MS.gene018284.t1 AT5G61810 25.614 285 174 9 33 309 81 335 2.15e-14 73.2
MS.gene018284.t1 AT1G74240 24.540 326 188 11 15 303 29 333 5.46e-14 72.4
MS.gene018284.t1 AT5G61810 25.614 285 174 9 33 309 224 478 5.51e-14 72.8
MS.gene018284.t1 AT3G20240 25.628 199 136 5 3 201 153 339 7.00e-14 72.0
MS.gene018284.t1 AT3G20240 25.468 267 167 9 31 282 66 315 6.01e-11 63.2
MS.gene018284.t1 AT2G33820 26.396 197 119 5 119 303 19 201 1.48e-13 70.1
MS.gene018284.t1 AT2G33820 26.396 197 119 5 119 303 19 201 1.68e-13 70.5
MS.gene018284.t1 AT2G33820 23.333 300 201 9 21 305 20 305 3.59e-11 63.5
MS.gene018284.t1 AT1G74240 24.590 305 177 10 31 303 2 285 1.74e-13 70.5
MS.gene018284.t1 AT5G56450 30.366 191 111 8 21 201 147 325 4.93e-13 69.3
MS.gene018284.t1 AT4G26180 21.724 290 189 6 18 288 21 291 5.03e-13 68.9
MS.gene018284.t1 AT4G26180 28.643 199 115 6 120 304 24 209 1.81e-12 67.0
MS.gene018284.t1 AT1G25380 29.843 191 119 5 28 210 132 315 5.34e-13 69.3
MS.gene018284.t1 AT1G25380 22.807 285 192 7 33 305 37 305 8.82e-13 68.6
MS.gene018284.t1 AT1G25380 29.843 191 119 5 28 210 132 315 5.34e-13 69.3
MS.gene018284.t1 AT1G25380 22.807 285 192 7 33 305 37 305 8.82e-13 68.6
MS.gene018284.t1 AT4G03115 25.743 202 112 4 118 308 39 213 5.40e-13 67.8
MS.gene018284.t1 AT4G26180 21.429 322 212 7 18 317 21 323 5.66e-13 68.9
MS.gene018284.t1 AT4G03115 25.743 202 112 4 118 308 39 213 7.26e-13 67.4
MS.gene018284.t1 AT4G03115 25.743 202 112 4 118 308 39 213 2.06e-12 67.4
MS.gene018284.t1 AT4G03115 25.743 202 112 4 118 308 71 245 2.17e-12 67.4
MS.gene018284.t1 AT5G58970 23.311 296 182 11 33 309 32 301 4.71e-12 66.2
MS.gene018284.t1 AT5G48970 22.697 304 188 8 33 301 38 329 5.11e-12 66.2
MS.gene018284.t1 AT5G48970 22.222 270 167 8 58 301 6 258 1.85e-11 63.9
MS.gene018284.t1 AT5G01500 25.168 298 181 11 33 319 135 401 2.67e-11 64.3
MS.gene018284.t1 AT3G21390 22.297 296 196 7 33 300 35 324 4.98e-11 63.2
MS.gene018284.t1 AT3G21390 22.297 296 196 7 33 300 57 346 6.35e-11 63.2

Find 85 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGTCCCAGTTGATTTC+GGG 0.221048 6.2:+10695670 None:intergenic
GGGATTCGTGGTTTGTATAA+AGG 0.270189 6.2:-10693976 MS.gene018284:CDS
GTAGTTTCAGATAGTTTAAA+TGG 0.289394 6.2:+10693859 None:intergenic
ATACCTGTCCCAGTTGATTT+CGG 0.289930 6.2:+10695669 None:intergenic
AGGAGTACCTTTCTCAGATT+TGG 0.289958 6.2:+10691969 None:intergenic
ACCCTTGCACCATCAACTTT+TGG 0.312637 6.2:+10692781 None:intergenic
ATGGGGTACTTCAATGATAT+TGG 0.313800 6.2:-10691294 MS.gene018284:CDS
GCTTGAACTAAAACAATCTT+TGG 0.320206 6.2:+10691940 None:intergenic
GCTCAAGTCAACGCTTCTTA+TGG 0.333157 6.2:-10692614 MS.gene018284:CDS
TCAGATTAGCCAAAAGTTGA+TGG 0.349779 6.2:-10692790 MS.gene018284:intron
TGGCTGCTCCCGAAATCAAC+TGG 0.354331 6.2:-10695678 MS.gene018284:CDS
GGATTCGTGGTTTGTATAAA+GGG 0.366398 6.2:-10693975 MS.gene018284:CDS
TACAATCAAGACTCGGTTAC+AGG 0.372914 6.2:-10691863 MS.gene018284:intron
GCTGACATGCTGACAAATCT+TGG 0.376196 6.2:+10691317 None:intergenic
TGATAAGGTCTGAGGGAATC+CGG 0.376535 6.2:-10692710 MS.gene018284:CDS
AATTATCGTACCACGTCAAT+TGG 0.383684 6.2:+10693769 None:intergenic
CGTGGTTTGTATAAAGGGTT+TGG 0.386999 6.2:-10693970 MS.gene018284:CDS
AAAGGTGTATATAGAGGATT+AGG 0.398284 6.2:-10691341 MS.gene018284:CDS
GTGAGAAATATGATTCTTGC+AGG 0.402651 6.2:+10693925 None:intergenic
ATTCACCATCTAGCGCTGTT+TGG 0.406563 6.2:-10692650 MS.gene018284:CDS
ATGCAGTTCTCTCCGCAGTA+TGG 0.411965 6.2:+10694031 None:intergenic
CACCATCTAGCGCTGTTTGG+TGG 0.425293 6.2:-10692647 MS.gene018284:CDS
AAATTCTATGTTGTCGGAGC+TGG 0.429056 6.2:-10694126 MS.gene018284:CDS
GATAAGGTCTGAGGGAATCC+GGG 0.449548 6.2:-10692709 MS.gene018284:CDS
CTCAAAACAGATGGGATTCG+TGG 0.451071 6.2:-10693988 MS.gene018284:CDS
ATGTTGCTCGTAAGTTGATA+AGG 0.453641 6.2:-10692725 MS.gene018284:CDS
AATCATATTTCTCACTGCCT+TGG 0.456899 6.2:-10693917 MS.gene018284:CDS
AAAACAAAATTCTATGTTGT+CGG 0.460378 6.2:-10694132 MS.gene018284:CDS
GCCCACCAAACAGCGCTAGA+TGG 0.463527 6.2:+10692645 None:intergenic
CTAGTCTTCACAACAGAGAC+AGG 0.467783 6.2:+10694072 None:intergenic
TCGGGCCATGCCCAATATAG+TGG 0.472114 6.2:-10692756 MS.gene018284:CDS
AATTGATCAGTGAGGATGGT+TGG 0.475537 6.2:-10691364 MS.gene018284:CDS
GTTGATGGTGCAAGGGTACT+CGG 0.479899 6.2:-10692775 MS.gene018284:CDS
AAATGGTTCAAGCATCTTGA+AGG 0.482454 6.2:+10693876 None:intergenic
TGCAGGAATTGCTCCGGTGA+CGG 0.488746 6.2:+10693942 None:intergenic
CTCCCGAAATCAACTGGGAC+AGG 0.489215 6.2:-10695672 MS.gene018284:intron
GGTTGGAAAGGTGTATATAG+AGG 0.505069 6.2:-10691347 MS.gene018284:CDS
AAAACAATCTTTGGCAGACT+AGG 0.506129 6.2:+10691949 None:intergenic
GATTTGTCAGCATGTCAGCA+TGG 0.509157 6.2:-10691313 MS.gene018284:CDS
GCTGTTTGGTGGGCAAGTTA+CGG 0.509649 6.2:-10692636 MS.gene018284:CDS
CTGTCTCTGTTGTGAAGACT+AGG 0.510659 6.2:-10694071 MS.gene018284:CDS
CTTGAAGGAAGCCACCTTTG+TGG 0.511948 6.2:+10693891 None:intergenic
GGGTTTGGCACTGCCGTCAC+CGG 0.512242 6.2:-10693955 MS.gene018284:CDS
ACCATCTAGCGCTGTTTGGT+GGG 0.512623 6.2:-10692646 MS.gene018284:CDS
GCCATAGCAAATGGCATTGG+TGG 0.513738 6.2:-10693829 MS.gene018284:CDS
ACACAGGCTGCCATAGCAAA+TGG 0.522193 6.2:-10693838 MS.gene018284:CDS
ATTTGTCAGCATGTCAGCAT+GGG 0.524386 6.2:-10691312 MS.gene018284:CDS
GGCTGCTCCCGAAATCAACT+GGG 0.527795 6.2:-10695677 MS.gene018284:CDS
AAAGGATTGCTCAAAACAGA+TGG 0.530572 6.2:-10693997 MS.gene018284:CDS
AGCCAAAAGTTGATGGTGCA+AGG 0.530699 6.2:-10692783 MS.gene018284:CDS
GATGATACCAAATCTGAGAA+AGG 0.530915 6.2:-10691976 MS.gene018284:CDS
GATTCTTGCAGGAATTGCTC+CGG 0.539577 6.2:+10693936 None:intergenic
GCCACCAATGCCATTTGCTA+TGG 0.544678 6.2:+10693828 None:intergenic
CGAGTCTTGATTGTATCCAA+TGG 0.544870 6.2:+10691871 None:intergenic
GCACCACAGGTGATGGGACA+TGG 0.548711 6.2:-10691419 MS.gene018284:intron
CGGGCCATGCCCAATATAGT+GGG 0.550933 6.2:-10692755 MS.gene018284:CDS
TTGATGGTGCAAGGGTACTC+GGG 0.558010 6.2:-10692774 MS.gene018284:CDS
TGTTGTGAAGACTAGGATGC+AGG 0.567417 6.2:-10694064 MS.gene018284:CDS
AGCCACCTTTGTGGTCTCCA+AGG 0.578075 6.2:+10693900 None:intergenic
ATCATGCATTACAACTCCAT+TGG 0.591643 6.2:-10691887 MS.gene018284:CDS
CAAGTCAACGCTTCTTATGG+AGG 0.592490 6.2:-10692611 MS.gene018284:intron
GCCAAAAGTTGATGGTGCAA+GGG 0.597627 6.2:-10692782 MS.gene018284:CDS
TCGTAAGTTGATAAGGTCTG+AGG 0.600329 6.2:-10692718 MS.gene018284:CDS
ATCAGTGAGGATGGTTGGAA+AGG 0.600695 6.2:-10691359 MS.gene018284:CDS
AAAGAATTGATCAGTGAGGA+TGG 0.605272 6.2:-10691368 MS.gene018284:CDS
CGTAAGTTGATAAGGTCTGA+GGG 0.606397 6.2:-10692717 MS.gene018284:CDS
GCTGCCATAGCAAATGGCAT+TGG 0.608170 6.2:-10693832 MS.gene018284:CDS
AAGGATTGCTCAAAACAGAT+GGG 0.614571 6.2:-10693996 MS.gene018284:CDS
ATAAGGTCTGAGGGAATCCG+GGG 0.614856 6.2:-10692708 MS.gene018284:CDS
GCAAAAGATGAAGAAGCAGC+TGG 0.622332 6.2:-10690800 MS.gene018284:CDS
TAAACTATCTGAAACTACAC+AGG 0.624945 6.2:-10693854 MS.gene018284:CDS
CAAACCCTCGGTATAACCCC+CGG 0.627668 6.2:+10692691 None:intergenic
TGGTTTGCACCACAGGTGAT+GGG 0.635744 6.2:-10691425 MS.gene018284:intron
CACTGCCTTGGAGACCACAA+AGG 0.636138 6.2:-10693905 MS.gene018284:CDS
TGCCTTGGAGACCACAAAGG+TGG 0.640000 6.2:-10693902 MS.gene018284:CDS
GGCCATGCCCAATATAGTGG+GGG 0.640509 6.2:-10692753 MS.gene018284:CDS
CATTGGATACAATCAAGACT+CGG 0.643386 6.2:-10691870 MS.gene018284:CDS
GGGCCATGCCCAATATAGTG+GGG 0.654063 6.2:-10692754 MS.gene018284:CDS
TGTTAAAGAATTGATCAGTG+AGG 0.667195 6.2:-10691372 MS.gene018284:CDS
TAACAGATAGACCAAACCCT+CGG 0.686669 6.2:+10692679 None:intergenic
TTTGTCAGCATGTCAGCATG+GGG 0.695351 6.2:-10691311 MS.gene018284:CDS
TAGTCTTCACAACAGAGACA+GGG 0.706024 6.2:+10694073 None:intergenic
TGTGTTTGTTCCAATTGACG+TGG 0.709166 6.2:-10693779 MS.gene018284:intron
TAAGGTCTGAGGGAATCCGG+GGG 0.742890 6.2:-10692707 MS.gene018284:CDS
GGTTGCTTCAAACCATACTG+CGG 0.743023 6.2:-10694043 MS.gene018284:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTAAAATAAATTCAAT+AGG + chr6.2:10691214-10691233 None:intergenic 10.0%
!! ATTTCTTGATTTATATTATT+TGG - chr6.2:10695503-10695522 MS.gene018284:intron 10.0%
!! TAATAATATCTGTTTAATAA+TGG - chr6.2:10691041-10691060 MS.gene018284:intron 10.0%
!!! TCAAATATTCTTTTTTTAAA+TGG + chr6.2:10693448-10693467 None:intergenic 10.0%
!!! TTTTATAATACAGAAAATTA+CGG + chr6.2:10692114-10692133 None:intergenic 10.0%
!!! TTTTTTTTTTTTGAAGAAAT+TGG - chr6.2:10695414-10695433 MS.gene018284:intron 10.0%
!! AATATGACATTAAATTCATA+TGG + chr6.2:10693557-10693576 None:intergenic 15.0%
!! ACAAGCAAAAAAAATATAAT+TGG + chr6.2:10694986-10695005 None:intergenic 15.0%
!! CAAGCAAAAAAAATATAATT+GGG + chr6.2:10694985-10695004 None:intergenic 15.0%
!! GTTTAATAATGGTTATTATA+AGG - chr6.2:10691052-10691071 MS.gene018284:intron 15.0%
!! TAACAATACATTAAAAACAA+GGG + chr6.2:10692029-10692048 None:intergenic 15.0%
!! TAATAGTTAATTGAAACAAT+AGG - chr6.2:10693477-10693496 MS.gene018284:intron 15.0%
!! TCAATTAACTATTATTATGA+AGG + chr6.2:10693471-10693490 None:intergenic 15.0%
!! TTAACAATACATTAAAAACA+AGG + chr6.2:10692030-10692049 None:intergenic 15.0%
!!! AAGTTCTATCTTTTTAAAAT+GGG - chr6.2:10694897-10694916 MS.gene018284:intron 15.0%
!!! GTAAAAAAGAAATTTTGAAA+TGG - chr6.2:10694330-10694349 MS.gene018284:intron 15.0%
!!! TTTGAAAGTGTAAAAAAAAA+TGG - chr6.2:10692737-10692756 MS.gene018284:CDS 15.0%
!!! TTTTACTAATAATGATGATT+TGG - chr6.2:10694651-10694670 MS.gene018284:intron 15.0%
!! AAAAAAAATATGAGTCAAGT+TGG + chr6.2:10695012-10695031 None:intergenic 20.0%
!! AAAAAATATGTAGTGATTAG+TGG - chr6.2:10691018-10691037 MS.gene018284:intron 20.0%
!! AAAACAAAATTCTATGTTGT+CGG - chr6.2:10692328-10692347 MS.gene018284:intron 20.0%
!! AAAGTTATAACATTTGGATA+AGG + chr6.2:10693609-10693628 None:intergenic 20.0%
!! AATAATGTCCTTAATATTGA+TGG + chr6.2:10694436-10694455 None:intergenic 20.0%
!! AATATAGAAACTAAAGGAAA+AGG + chr6.2:10693921-10693940 None:intergenic 20.0%
!! GAATAATCAATTATATGATC+TGG + chr6.2:10694215-10694234 None:intergenic 20.0%
!! GTAATGAAATGAATAAGTTT+AGG - chr6.2:10693881-10693900 MS.gene018284:CDS 20.0%
!! GTTAGGGAAAATAATTAAAT+TGG - chr6.2:10693057-10693076 MS.gene018284:intron 20.0%
!! TAAAAATGAGTCAACATATA+TGG + chr6.2:10690993-10691012 None:intergenic 20.0%
!! TATAATCACCAAATTTATAC+CGG + chr6.2:10694876-10694895 None:intergenic 20.0%
!! TCAAGTTTGAATCAAAATAA+GGG + chr6.2:10693009-10693028 None:intergenic 20.0%
!! TGATACAATATAGAAACTAA+AGG + chr6.2:10693927-10693946 None:intergenic 20.0%
!! TTGAAGAAAGTTATAACATT+TGG + chr6.2:10693615-10693634 None:intergenic 20.0%
!! TTGTATGATACTTATACATA+AGG - chr6.2:10692782-10692801 MS.gene018284:CDS 20.0%
!!! AAAAAGAAATTTTGAAATGG+TGG - chr6.2:10694333-10694352 MS.gene018284:intron 20.0%
!!! AACAGAAAATATTGATGATA+TGG + chr6.2:10691907-10691926 None:intergenic 20.0%
!!! ATTTCTTTTTTACTCTTGAT+AGG + chr6.2:10694323-10694342 None:intergenic 20.0%
!!! ATTTTACTATTTTGAGAATG+TGG - chr6.2:10691223-10691242 MS.gene018284:intron 20.0%
!!! CAAGTTCTATCTTTTTAAAA+TGG - chr6.2:10694896-10694915 MS.gene018284:intron 20.0%
!!! GTTCTTAAAACATTGATTTT+GGG - chr6.2:10691467-10691486 MS.gene018284:intron 20.0%
!!! TCAAAATTGTATCAGATTTT+AGG + chr6.2:10694180-10694199 None:intergenic 20.0%
!!! TTATAACATTGATTTTGAGT+AGG - chr6.2:10691849-10691868 MS.gene018284:intron 20.0%
!!! TTTCTTTTTTACTCTTGATA+GGG + chr6.2:10694322-10694341 None:intergenic 20.0%
! AAGTGAACTTAATAACGTAA+AGG + chr6.2:10692287-10692306 None:intergenic 25.0%
! ACACTTTCAAAGTGTAATAA+AGG + chr6.2:10692728-10692747 None:intergenic 25.0%
! ATAATCACCAAATTTATACC+GGG + chr6.2:10694875-10694894 None:intergenic 25.0%
! ATACAACGAAATCAGATATA+TGG + chr6.2:10694136-10694155 None:intergenic 25.0%
! ATGAAATCGAAAATGAAGAA+AGG + chr6.2:10690827-10690846 None:intergenic 25.0%
! ATTCGTATATGTTGAAATCA+TGG - chr6.2:10692208-10692227 MS.gene018284:intron 25.0%
! CAAGATTTATTCAAGATTCT+AGG - chr6.2:10691157-10691176 MS.gene018284:intron 25.0%
! CTCAAGTTTGAATCAAAATA+AGG + chr6.2:10693010-10693029 None:intergenic 25.0%
! CTTATACATAAGGAATATTG+TGG - chr6.2:10692792-10692811 MS.gene018284:intron 25.0%
! GTAGTTTCAGATAGTTTAAA+TGG + chr6.2:10692604-10692623 None:intergenic 25.0%
! GTTTACTTTCAAACACTATT+TGG - chr6.2:10692981-10693000 MS.gene018284:intron 25.0%
! TACAACGAAATCAGATATAT+GGG + chr6.2:10694135-10694154 None:intergenic 25.0%
! TCTATTACAATTGTGATTTG+TGG - chr6.2:10691510-10691529 MS.gene018284:intron 25.0%
! TGGTATTGTTTCAATTGATT+AGG - chr6.2:10695680-10695699 MS.gene018284:CDS 25.0%
! TTATCAATCAGAAAATCAAC+AGG + chr6.2:10693360-10693379 None:intergenic 25.0%
! TTTCTAACTATGTCAGATAT+TGG - chr6.2:10692884-10692903 MS.gene018284:intron 25.0%
! TTTGGAAATCTATGCTATAA+TGG + chr6.2:10694108-10694127 None:intergenic 25.0%
!! CTATTACAATTGTGATTTGT+GGG - chr6.2:10691511-10691530 MS.gene018284:intron 25.0%
!! TATTGTATTTCTGCACAATT+AGG - chr6.2:10694406-10694425 MS.gene018284:intron 25.0%
!! TGATACCTATTTTCTATGTT+GGG - chr6.2:10694703-10694722 MS.gene018284:intron 25.0%
!! TTGATACCTATTTTCTATGT+TGG - chr6.2:10694702-10694721 MS.gene018284:intron 25.0%
!! TTTGGTCTGTATCAATATTT+TGG - chr6.2:10695521-10695540 MS.gene018284:intron 25.0%
!!! ATTTTGGTATTAAACGAATC+TGG - chr6.2:10695537-10695556 MS.gene018284:intron 25.0%
!!! CTTGTTTTCTTATTCATATC+TGG - chr6.2:10695381-10695400 MS.gene018284:intron 25.0%
!!! GGTTCTTAAAACATTGATTT+TGG - chr6.2:10691466-10691485 MS.gene018284:intron 25.0%
!!! GTTTTAAAAATCAAGCCAAA+TGG - chr6.2:10691314-10691333 MS.gene018284:CDS 25.0%
!!! TATATACGGTTTGGTTATTT+CGG - chr6.2:10691734-10691753 MS.gene018284:intron 25.0%
!!! TGACTCATATTTTTTTTGAC+TGG - chr6.2:10695015-10695034 MS.gene018284:intron 25.0%
!!! TTTTGATTCAAACTTGAGTT+TGG - chr6.2:10693012-10693031 MS.gene018284:intron 25.0%
AAAAATCAAGCCAAATGGTA+CGG - chr6.2:10691319-10691338 MS.gene018284:CDS 30.0%
AAGGATTGGATTAAATTGCT+TGG - chr6.2:10694242-10694261 MS.gene018284:intron 30.0%
AATATAACAAACAGCCAACA+AGG + chr6.2:10694632-10694651 None:intergenic 30.0%
AATGGAGTACAAAGTTATAC+AGG + chr6.2:10694090-10694109 None:intergenic 30.0%
AATTGATTATTCAGCCTCAA+AGG - chr6.2:10694223-10694242 MS.gene018284:intron 30.0%
AGGCATAAATGAACATCATA+AGG + chr6.2:10693340-10693359 None:intergenic 30.0%
ATCAATTATATGATCTGGCA+AGG + chr6.2:10694210-10694229 None:intergenic 30.0%
CAATTTAATCCAATCCTTTG+AGG + chr6.2:10694240-10694259 None:intergenic 30.0%
GCTTGAACTAAAACAATCTT+TGG + chr6.2:10694523-10694542 None:intergenic 30.0%
TAATCACCAAATTTATACCG+GGG + chr6.2:10694874-10694893 None:intergenic 30.0%
TCTGAAAATCATTCAGGTAA+AGG + chr6.2:10693655-10693674 None:intergenic 30.0%
TGTTAAAGAATTGATCAGTG+AGG - chr6.2:10695088-10695107 MS.gene018284:intron 30.0%
TGTTAAAGTGACAACTGTAA+TGG - chr6.2:10694674-10694693 MS.gene018284:intron 30.0%
! AAAAAAAATGGACTCGTTGA+TGG - chr6.2:10692749-10692768 MS.gene018284:CDS 30.0%
! AAAGGTGTATATAGAGGATT+AGG - chr6.2:10695119-10695138 MS.gene018284:intron 30.0%
! ACATTATTCACTGATTGCTT+TGG - chr6.2:10694448-10694467 MS.gene018284:intron 30.0%
! ACTATTTTCCACCATAATTG+CGG + chr6.2:10691278-10691297 None:intergenic 30.0%
! ATCCTTCTGTTTGATAGTTA+GGG - chr6.2:10693041-10693060 MS.gene018284:intron 30.0%
! TAAACTATCTGAAACTACAC+AGG - chr6.2:10692606-10692625 MS.gene018284:intron 30.0%
! TATCCTTCTGTTTGATAGTT+AGG - chr6.2:10693040-10693059 MS.gene018284:intron 30.0%
! TCTCAGTCCTTCAAAATTTT+CGG + chr6.2:10693111-10693130 None:intergenic 30.0%
!! GATAAACGAAAGTATTGTTC+AGG + chr6.2:10695578-10695597 None:intergenic 30.0%
!! TCTGTTTGATAATGACGTAA+TGG - chr6.2:10691921-10691940 MS.gene018284:CDS 30.0%
!!! GTTCACTTTTTTGTTTCTGT+AGG - chr6.2:10692299-10692318 MS.gene018284:intron 30.0%
!!! TTATTTTGACAGTGCAATGT+GGG - chr6.2:10692842-10692861 MS.gene018284:intron 30.0%
AAAACAATCTTTGGCAGACT+AGG + chr6.2:10694514-10694533 None:intergenic 35.0%
AAAGAATTGATCAGTGAGGA+TGG - chr6.2:10695092-10695111 MS.gene018284:intron 35.0%
AAAGGATTGCTCAAAACAGA+TGG - chr6.2:10692463-10692482 MS.gene018284:intron 35.0%
AAATGGTTCAAGCATCTTGA+AGG + chr6.2:10692587-10692606 None:intergenic 35.0%
AACATCTAAACCATTGCAGT+TGG + chr6.2:10694729-10694748 None:intergenic 35.0%
AACCAAACCGTATATAGTGA+CGG + chr6.2:10691366-10691385 None:intergenic 35.0%
AAGGATTGCTCAAAACAGAT+GGG - chr6.2:10692464-10692483 MS.gene018284:intron 35.0%
AATCATATTTCTCACTGCCT+TGG - chr6.2:10692543-10692562 MS.gene018284:intron 35.0%
AATTATCGTACCACGTCAAT+TGG + chr6.2:10692694-10692713 None:intergenic 35.0%
ACAGGTATTCATAACCTTGT+TGG - chr6.2:10694615-10694634 MS.gene018284:intron 35.0%
ACATGAATTTGTAGGAACTG+AGG - chr6.2:10694267-10694286 MS.gene018284:intron 35.0%
ACTATTTGCCACCATAATTG+CGG + chr6.2:10691636-10691655 None:intergenic 35.0%
ATCATGCATTACAACTCCAT+TGG - chr6.2:10694573-10694592 MS.gene018284:intron 35.0%
ATCTAAACCCCCACTATATT+GGG + chr6.2:10693717-10693736 None:intergenic 35.0%
ATGCATATCTATTGCAACTG+TGG - chr6.2:10691881-10691900 MS.gene018284:CDS 35.0%
ATGTTCAATCAAATCATCCG+TGG - chr6.2:10692050-10692069 MS.gene018284:intron 35.0%
ATTATTCAGCCTCAAAGGAT+TGG - chr6.2:10694228-10694247 MS.gene018284:intron 35.0%
ATTCCGTCTATTTAACTGCT+AGG - chr6.2:10693982-10694001 MS.gene018284:CDS 35.0%
CACCTTATGTCTGCAAATAA+AGG + chr6.2:10693154-10693173 None:intergenic 35.0%
CATTGGATACAATCAAGACT+CGG - chr6.2:10694590-10694609 MS.gene018284:intron 35.0%
GATGAACAGTACAGTTCAAT+TGG - chr6.2:10691692-10691711 MS.gene018284:intron 35.0%
GATGATACCAAATCTGAGAA+AGG - chr6.2:10694484-10694503 MS.gene018284:intron 35.0%
GCTTGGATACATGAATTTGT+AGG - chr6.2:10694259-10694278 MS.gene018284:intron 35.0%
GGCTAATCTGAAAATCATTC+AGG + chr6.2:10693661-10693680 None:intergenic 35.0%
GTGAGAAATATGATTCTTGC+AGG + chr6.2:10692538-10692557 None:intergenic 35.0%
TAACCACAATCGCAATCAAA+AGG - chr6.2:10692150-10692169 MS.gene018284:intron 35.0%
TAGGCGAACCATCAATATTA+AGG - chr6.2:10694425-10694444 MS.gene018284:intron 35.0%
TCTGATTTCGTTGTATTCCA+TGG - chr6.2:10694140-10694159 MS.gene018284:CDS 35.0%
TGAGTAAAATCTCATGCTCT+AGG - chr6.2:10695336-10695355 MS.gene018284:intron 35.0%
TGATTCAAACTTGAGTTTGG+CGG - chr6.2:10693015-10693034 MS.gene018284:intron 35.0%
TGTCTTGGTTGCTTCTTTAA+GGG - chr6.2:10693212-10693231 MS.gene018284:intron 35.0%
TTCCCTAACTATCAAACAGA+AGG + chr6.2:10693046-10693065 None:intergenic 35.0%
TTGTCTTGGTTGCTTCTTTA+AGG - chr6.2:10693211-10693230 MS.gene018284:intron 35.0%
! ACTGCATTTTCTGTTGTGAA+AGG - chr6.2:10692445-10692464 MS.gene018284:intron 35.0%
! ATCAGATATATGGGCTACTT+TGG + chr6.2:10694126-10694145 None:intergenic 35.0%
! ATGGGGTACTTCAATGATAT+TGG - chr6.2:10695166-10695185 MS.gene018284:intron 35.0%
! CTTTATTTGCAGACATAAGG+TGG - chr6.2:10693152-10693171 MS.gene018284:intron 35.0%
! GATGCATCCGAAAATTTTGA+AGG - chr6.2:10693101-10693120 MS.gene018284:intron 35.0%
! GGATTCGTGGTTTGTATAAA+GGG - chr6.2:10692485-10692504 MS.gene018284:intron 35.0%
! GTCCTTTATTTGCAGACATA+AGG - chr6.2:10693149-10693168 MS.gene018284:intron 35.0%
! TATGCCTACAATCTGATTTG+CGG + chr6.2:10694059-10694078 None:intergenic 35.0%
! TCAAAATTTTCGGATGCATC+AGG + chr6.2:10693101-10693120 None:intergenic 35.0%
! TCAGATTAGCCAAAAGTTGA+TGG - chr6.2:10693670-10693689 MS.gene018284:intron 35.0%
!! ATGTTGCTCGTAAGTTGATA+AGG - chr6.2:10693735-10693754 MS.gene018284:intron 35.0%
!! TATATACGGTTTGGTTATCG+TGG - chr6.2:10691370-10691389 MS.gene018284:CDS 35.0%
!! TGCTGGATTGATGTTTTGTT+CGG - chr6.2:10691823-10691842 MS.gene018284:intron 35.0%
!! TGTGGTTCTAAATTGTGTTG+TGG - chr6.2:10691241-10691260 MS.gene018284:intron 35.0%
!!! ATTGTTTTAGTTCAAGCAGC+AGG - chr6.2:10694526-10694545 MS.gene018284:intron 35.0%
!!! GTTATTTTGACAGTGCAATG+TGG - chr6.2:10692841-10692860 MS.gene018284:intron 35.0%
!!! TTGTTTTAGTTCAAGCAGCA+GGG - chr6.2:10694527-10694546 MS.gene018284:intron 35.0%
AAATTCTATGTTGTCGGAGC+TGG - chr6.2:10692334-10692353 MS.gene018284:intron 40.0%
AACCAAACCGTATATAGCGA+CGG + chr6.2:10691730-10691749 None:intergenic 40.0%
AACCGTCACTATATACGGTT+TGG - chr6.2:10691361-10691380 MS.gene018284:CDS 40.0%
AATTGATCAGTGAGGATGGT+TGG - chr6.2:10695096-10695115 MS.gene018284:intron 40.0%
ACCAATTGAACCGTACCATT+TGG + chr6.2:10691332-10691351 None:intergenic 40.0%
ATTTGTCAGCATGTCAGCAT+GGG - chr6.2:10695148-10695167 MS.gene018284:intron 40.0%
CAACACACACATGCTACAAA+TGG + chr6.2:10694024-10694043 None:intergenic 40.0%
CAGCCTAGCAGTTAAATAGA+CGG + chr6.2:10693988-10694007 None:intergenic 40.0%
CAGTAAATCATGTGTTACCC+CGG - chr6.2:10694854-10694873 MS.gene018284:intron 40.0%
CATCTAAACCCCCACTATAT+TGG + chr6.2:10693718-10693737 None:intergenic 40.0%
CGAGTCTTGATTGTATCCAA+TGG + chr6.2:10694592-10694611 None:intergenic 40.0%
CTGTGAACCGTCACTATATA+CGG - chr6.2:10691356-10691375 MS.gene018284:CDS 40.0%
GTGTTACCCCGGTATAAATT+TGG - chr6.2:10694865-10694884 MS.gene018284:intron 40.0%
GTTGGCCCAACATAGAAAAT+AGG + chr6.2:10694711-10694730 None:intergenic 40.0%
TAACAGATAGACCAAACCCT+CGG + chr6.2:10693784-10693803 None:intergenic 40.0%
TAGTCTTCACAACAGAGACA+GGG + chr6.2:10692390-10692409 None:intergenic 40.0%
TATCTCTGTGACCGCAATTA+TGG - chr6.2:10691264-10691283 MS.gene018284:intron 40.0%
TATTTAACTGCTAGGCTGGT+AGG - chr6.2:10693990-10694009 MS.gene018284:CDS 40.0%
TGTGTTTGTTCCAATTGACG+TGG - chr6.2:10692681-10692700 MS.gene018284:CDS 40.0%
TGTTGAACCGTCGCTATATA+CGG - chr6.2:10691720-10691739 MS.gene018284:intron 40.0%
TTCGTTGTATTCCATGGACA+TGG - chr6.2:10694146-10694165 MS.gene018284:intron 40.0%
! ATACCTGTCCCAGTTGATTT+CGG + chr6.2:10690794-10690813 None:intergenic 40.0%
! ATGCCTACAATCTGATTTGC+GGG + chr6.2:10694058-10694077 None:intergenic 40.0%
! CGTGGTTTGTATAAAGGGTT+TGG - chr6.2:10692490-10692509 MS.gene018284:intron 40.0%
! CTTCTTCATCTTTTGCGCAT+AGG + chr6.2:10695656-10695675 None:intergenic 40.0%
! GGGATTCGTGGTTTGTATAA+AGG - chr6.2:10692484-10692503 MS.gene018284:intron 40.0%
! GGTTGGAAAGGTGTATATAG+AGG - chr6.2:10695113-10695132 MS.gene018284:intron 40.0%
! GTTTTCAGTCTACGTTGTCT+TGG - chr6.2:10693197-10693216 MS.gene018284:intron 40.0%
! TACAATCAAGACTCGGTTAC+AGG - chr6.2:10694597-10694616 MS.gene018284:intron 40.0%
! TTTTTCCCTGTCTTTCATCG+TGG - chr6.2:10693304-10693323 MS.gene018284:intron 40.0%
!! AGGAGTACCTTTCTCAGATT+TGG + chr6.2:10694494-10694513 None:intergenic 40.0%
!! CAACCTTTTGATTGCGATTG+TGG + chr6.2:10692156-10692175 None:intergenic 40.0%
!! CGCTGGATTGATGTTTTGTT+CGG - chr6.2:10691445-10691464 MS.gene018284:intron 40.0%
!! CGTAAGTTGATAAGGTCTGA+GGG - chr6.2:10693743-10693762 MS.gene018284:intron 40.0%
!! TCGTAAGTTGATAAGGTCTG+AGG - chr6.2:10693742-10693761 MS.gene018284:intron 40.0%
!!! ACTCTTTTCAGGTGTTACTG+TGG - chr6.2:10692357-10692376 MS.gene018284:intron 40.0%
!!! TGTTTTAGTTCAAGCAGCAG+GGG - chr6.2:10694528-10694547 MS.gene018284:intron 40.0%
AACCGTCGCTATATACGGTT+TGG - chr6.2:10691725-10691744 MS.gene018284:intron 45.0%
ACTTGCCACGATGAAAGACA+GGG + chr6.2:10693312-10693331 None:intergenic 45.0%
ATCAGTGAGGATGGTTGGAA+AGG - chr6.2:10695101-10695120 MS.gene018284:intron 45.0%
ATTCACCATCTAGCGCTGTT+TGG - chr6.2:10693810-10693829 MS.gene018284:CDS 45.0%
CAAGTCAACGCTTCTTATGG+AGG - chr6.2:10693849-10693868 MS.gene018284:CDS 45.0%
CATGCAGAGAAAGAGAGAGA+AGG + chr6.2:10694788-10694807 None:intergenic 45.0%
CCAAGAAGAAACCACAATCG+AGG + chr6.2:10691762-10691781 None:intergenic 45.0%
CCTCGATTGTGGTTTCTTCT+TGG - chr6.2:10691759-10691778 MS.gene018284:intron 45.0%
CGTCTATTTAACTGCTAGGC+TGG - chr6.2:10693986-10694005 MS.gene018284:CDS 45.0%
CGTGGAAGCTAGATCTTGAT+GGG - chr6.2:10692068-10692087 MS.gene018284:intron 45.0%
CTCAAAACAGATGGGATTCG+TGG - chr6.2:10692472-10692491 MS.gene018284:intron 45.0%
CTGTCTCTGTTGTGAAGACT+AGG - chr6.2:10692389-10692408 MS.gene018284:intron 45.0%
CTTCTTATGGAGGTGAGACA+TGG - chr6.2:10693859-10693878 MS.gene018284:CDS 45.0%
GATCTCTGTAGCCGCAATTA+TGG - chr6.2:10691622-10691641 MS.gene018284:intron 45.0%
GATTCTTGCAGGAATTGCTC+CGG + chr6.2:10692527-10692546 None:intergenic 45.0%
GATTTGTCAGCATGTCAGCA+TGG - chr6.2:10695147-10695166 MS.gene018284:intron 45.0%
GCAAAAGATGAAGAAGCAGC+TGG - chr6.2:10695660-10695679 MS.gene018284:intron 45.0%
GCCAAATGGTACGGTTCAAT+TGG - chr6.2:10691328-10691347 MS.gene018284:CDS 45.0%
GCTCAAGTCAACGCTTCTTA+TGG - chr6.2:10693846-10693865 MS.gene018284:CDS 45.0%
GCTGACATGCTGACAAATCT+TGG + chr6.2:10695146-10695165 None:intergenic 45.0%
GGTTGCTTCAAACCATACTG+CGG - chr6.2:10692417-10692436 MS.gene018284:intron 45.0%
GTGGAAGCTAGATCTTGATG+GGG - chr6.2:10692069-10692088 MS.gene018284:intron 45.0%
TACTTGCCACGATGAAAGAC+AGG + chr6.2:10693313-10693332 None:intergenic 45.0%
TGATAAGGTCTGAGGGAATC+CGG - chr6.2:10693750-10693769 MS.gene018284:intron 45.0%
TGTTGTGAAGACTAGGATGC+AGG - chr6.2:10692396-10692415 MS.gene018284:intron 45.0%
TTATTTCGGCTCCTCGATTG+TGG - chr6.2:10691748-10691767 MS.gene018284:intron 45.0%
TTTGTCAGCATGTCAGCATG+GGG - chr6.2:10695149-10695168 MS.gene018284:intron 45.0%
! ACCCTTGCACCATCAACTTT+TGG + chr6.2:10693682-10693701 None:intergenic 45.0%
! AGGCAGTTTTTCCATGTCCA+TGG + chr6.2:10694160-10694179 None:intergenic 45.0%
! CCATCAAGATCTAGCTTCCA+CGG + chr6.2:10692070-10692089 None:intergenic 45.0%
! CTAGTCTTCACAACAGAGAC+AGG + chr6.2:10692391-10692410 None:intergenic 45.0%
! TACCTGTCCCAGTTGATTTC+GGG + chr6.2:10690793-10690812 None:intergenic 45.0%
! TGCCTACAATCTGATTTGCG+GGG + chr6.2:10694057-10694076 None:intergenic 45.0%
!! AGCCAAAAGTTGATGGTGCA+AGG - chr6.2:10693677-10693696 MS.gene018284:intron 45.0%
!! GCCAAAAGTTGATGGTGCAA+GGG - chr6.2:10693678-10693697 MS.gene018284:intron 45.0%
!!! GTTTTAGTTCAAGCAGCAGG+GGG - chr6.2:10694529-10694548 MS.gene018284:intron 45.0%
!!! TTTTGACTGGTTTGCACCAC+AGG - chr6.2:10695028-10695047 MS.gene018284:intron 45.0%
AACCCCCACTATATTGGGCA+TGG + chr6.2:10693712-10693731 None:intergenic 50.0%
ACACAGGCTGCCATAGCAAA+TGG - chr6.2:10692622-10692641 MS.gene018284:CDS 50.0%
ACAGTCGAATTGTGCCACGT+AGG - chr6.2:10691797-10691816 MS.gene018284:intron 50.0%
ACCATCTAGCGCTGTTTGGT+GGG - chr6.2:10693814-10693833 MS.gene018284:CDS 50.0%
AGCCCCGCAAATCAGATTGT+AGG - chr6.2:10694052-10694071 MS.gene018284:CDS 50.0%
ATAAGGTCTGAGGGAATCCG+GGG - chr6.2:10693752-10693771 MS.gene018284:intron 50.0%
ATGCAGTTCTCTCCGCAGTA+TGG + chr6.2:10692432-10692451 None:intergenic 50.0%
CCGTGGAAGCTAGATCTTGA+TGG - chr6.2:10692067-10692086 MS.gene018284:intron 50.0%
CTATGTTGGGCCAACTGCAA+TGG - chr6.2:10694716-10694735 MS.gene018284:intron 50.0%
CTCTGTAGCCGCAATTATGG+TGG - chr6.2:10691625-10691644 MS.gene018284:intron 50.0%
CTCTGTGACCGCAATTATGG+TGG - chr6.2:10691267-10691286 MS.gene018284:intron 50.0%
CTTGAAGGAAGCCACCTTTG+TGG + chr6.2:10692572-10692591 None:intergenic 50.0%
GATAAGGTCTGAGGGAATCC+GGG - chr6.2:10693751-10693770 MS.gene018284:intron 50.0%
GCTGCCATAGCAAATGGCAT+TGG - chr6.2:10692628-10692647 MS.gene018284:CDS 50.0%
TCAATCCAGCAAGACCTACG+TGG + chr6.2:10691814-10691833 None:intergenic 50.0%
TCAATCCAGCGAAACCTACG+TGG + chr6.2:10691436-10691455 None:intergenic 50.0%
TTTCCATGTCCCATCACCTG+TGG + chr6.2:10695047-10695066 None:intergenic 50.0%
! GCCACCAATGCCATTTGCTA+TGG + chr6.2:10692635-10692654 None:intergenic 50.0%
! GCCATAGCAAATGGCATTGG+TGG - chr6.2:10692631-10692650 MS.gene018284:CDS 50.0%
! GCTGTTTGGTGGGCAAGTTA+CGG - chr6.2:10693824-10693843 MS.gene018284:CDS 50.0%
! TCTGATTTGCGGGGCTACAT+AGG + chr6.2:10694048-10694067 None:intergenic 50.0%
! TGGTTTGCACCACAGGTGAT+GGG - chr6.2:10695035-10695054 MS.gene018284:intron 50.0%
!! GTTGATGGTGCAAGGGTACT+CGG - chr6.2:10693685-10693704 MS.gene018284:intron 50.0%
!! TTGATGGTGCAAGGGTACTC+GGG - chr6.2:10693686-10693705 MS.gene018284:intron 50.0%
ACAGTCGAATCGTGCCACGT+AGG - chr6.2:10691419-10691438 MS.gene018284:intron 55.0%
AGCCACCTTTGTGGTCTCCA+AGG + chr6.2:10692563-10692582 None:intergenic 55.0%
CAAACCCTCGGTATAACCCC+CGG + chr6.2:10693772-10693791 None:intergenic 55.0%
CACCATCTAGCGCTGTTTGG+TGG - chr6.2:10693813-10693832 MS.gene018284:CDS 55.0%
CACTGCCTTGGAGACCACAA+AGG - chr6.2:10692555-10692574 MS.gene018284:intron 55.0%
CGGGCCATGCCCAATATAGT+GGG - chr6.2:10693705-10693724 MS.gene018284:intron 55.0%
CTCCCGAAATCAACTGGGAC+AGG - chr6.2:10690788-10690807 MS.gene018284:CDS 55.0%
GAATCCGGGGGTTATACCGA+GGG - chr6.2:10693765-10693784 MS.gene018284:intron 55.0%
GGCCATGCCCAATATAGTGG+GGG - chr6.2:10693707-10693726 MS.gene018284:intron 55.0%
GGCTGCTCCCGAAATCAACT+GGG - chr6.2:10690783-10690802 MS.gene018284:CDS 55.0%
GGGCCATGCCCAATATAGTG+GGG - chr6.2:10693706-10693725 MS.gene018284:intron 55.0%
TAAGGTCTGAGGGAATCCGG+GGG - chr6.2:10693753-10693772 MS.gene018284:intron 55.0%
TCGGGCCATGCCCAATATAG+TGG - chr6.2:10693704-10693723 MS.gene018284:intron 55.0%
TGCAGGAATTGCTCCGGTGA+CGG + chr6.2:10692521-10692540 None:intergenic 55.0%
TGCCTTGGAGACCACAAAGG+TGG - chr6.2:10692558-10692577 MS.gene018284:intron 55.0%
TGGCTGCTCCCGAAATCAAC+TGG - chr6.2:10690782-10690801 MS.gene018284:CDS 55.0%
TTGTGCCACGTAGGTCTTGC+TGG - chr6.2:10691806-10691825 MS.gene018284:intron 55.0%
! CTGGTTTGCACCACAGGTGA+TGG - chr6.2:10695034-10695053 MS.gene018284:intron 55.0%
! GTCGGAGCTGGACTCTTTTC+AGG - chr6.2:10692346-10692365 MS.gene018284:intron 55.0%
!! GCAGCAGGGGGTATTATTGC+TGG - chr6.2:10694541-10694560 MS.gene018284:intron 55.0%
CGGGGGTTATACCGAGGGTT+TGG - chr6.2:10693770-10693789 MS.gene018284:intron 60.0%
GCCCACCAAACAGCGCTAGA+TGG + chr6.2:10693818-10693837 None:intergenic 60.0%
GGAATCCGGGGGTTATACCG+AGG - chr6.2:10693764-10693783 MS.gene018284:intron 60.0%
TCGTGCCACGTAGGTTTCGC+TGG - chr6.2:10691428-10691447 MS.gene018284:intron 60.0%
!! GCACCACAGGTGATGGGACA+TGG - chr6.2:10695041-10695060 MS.gene018284:intron 60.0%
GGGTTTGGCACTGCCGTCAC+CGG - chr6.2:10692505-10692524 MS.gene018284:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 10690781 10695701 10690781 ID=MS.gene018284
chr6.2 mRNA 10690781 10695701 10690781 ID=MS.gene018284.t1;Parent=MS.gene018284
chr6.2 exon 10695673 10695701 10695673 ID=MS.gene018284.t1.exon1;Parent=MS.gene018284.t1
chr6.2 CDS 10695673 10695701 10695673 ID=cds.MS.gene018284.t1;Parent=MS.gene018284.t1
chr6.2 exon 10693780 10694161 10693780 ID=MS.gene018284.t1.exon2;Parent=MS.gene018284.t1
chr6.2 CDS 10693780 10694161 10693780 ID=cds.MS.gene018284.t1;Parent=MS.gene018284.t1
chr6.2 exon 10692612 10692808 10692612 ID=MS.gene018284.t1.exon3;Parent=MS.gene018284.t1
chr6.2 CDS 10692612 10692808 10692612 ID=cds.MS.gene018284.t1;Parent=MS.gene018284.t1
chr6.2 exon 10691864 10692008 10691864 ID=MS.gene018284.t1.exon4;Parent=MS.gene018284.t1
chr6.2 CDS 10691864 10692008 10691864 ID=cds.MS.gene018284.t1;Parent=MS.gene018284.t1
chr6.2 exon 10691279 10691432 10691279 ID=MS.gene018284.t1.exon5;Parent=MS.gene018284.t1
chr6.2 CDS 10691279 10691432 10691279 ID=cds.MS.gene018284.t1;Parent=MS.gene018284.t1
chr6.2 exon 10690781 10690833 10690781 ID=MS.gene018284.t1.exon6;Parent=MS.gene018284.t1
chr6.2 CDS 10690781 10690833 10690781 ID=cds.MS.gene018284.t1;Parent=MS.gene018284.t1
Gene Sequence

>MS.gene018284

ATGGCTGCTCCCGAAATCAACTGGGACAGGTATAACGCTACTTCCTTTCTTCATTTTCGATTTCATTCTTCATTTAATTTTTCAATCTTTTTCTTAATTCGTAATTCTATTTTCGTTTTCTCTTTTCTTTACTTCTATATTAGATTACGCTTTTCTGAATGTGTCAAAGAAATCGAACAAAAATTACAATAAATAACTAGAAATATCAACCATATATGTTGACTCATTTTTACTGAAAAAAAATATGTAGTGATTAGTGGTAATAATATCTGTTTAATAATGGTTATTATAAGGTGAAAATGTAGTAGTAGTAATTAGTAATAATAATTGTTGATTTTTTTTTGTTTGTTGCTGAATAAGAAGATATATATTTTTTCAAGATTTATTCAAGATTCTAGGTTGAAGTTGAATGCTACTAGCTTCTTGTATACCTATTGAATTTATTTTACTATTTTGAGAATGTGGTTCTAAATTGTGTTGTGGTATCTCTGTGACCGCAATTATGGTGGAAAATAGTGAAAATTTTAAGTGATGTTTTAAAAATCAAGCCAAATGGTACGGTTCAATTGGTTGAACTGTGAACCGTCACTATATACGGTTTGGTTATCGTGGTTTCTTCTCAGTTCAAACAGTTTGAAACAGTCGAATCGTGCCACGTAGGTTTCGCTGGATTGATGTTTTGTTCGGTTCTTAAAACATTGATTTTGGGTAAGTATGTGCTAGTGCATATCTATTACAATTGTGATTTGTGGGTATATATTCTGTGATTTTTTCTGCTTGATAATGATTGAATTGTAACTGCAACGCGATTGAAGTAGTTAAGATTGATTGAAGTAGTTAAGATCTCTGTAGCCGCAATTATGGTGGCAAATAGTGAAAATTTTAAGTTTAAGCAACGTTTTAAAAATTGAGATGAACAGTACAGTTCAATTGGTTGAATGTTGAACCGTCGCTATATACGGTTTGGTTATTTCGGCTCCTCGATTGTGGTTTCTTCTTGGTTCAAACAGTTTGAAACAGTCGAATTGTGCCACGTAGGTCTTGCTGGATTGATGTTTTGTTCGGTTTTTATAACATTGATTTTGAGTAGGTATGCGCAGATGCATATCTATTGCAACTGTGGCCATATCATCAATATTTTCTGTTTGATAATGACGTAATGGCAACTGCGATCATAATCACAATTTAAAAGATTGATTGAAGTAGTTAAGATTTTTGTGTTTATGTCTATAATTATAGATGCTTCCCTTGTTTTTAATGTATTGTTAAATGTTCAATCAAATCATCCGTGGAAGCTAGATCTTGATGGGGATTGTAACTAATAATTTTTCCGTAATTTTCTGTATTATAAAAGATAATGATGTAACTGTAACCACAATCGCAATCAAAAGGTTGATTGAAATAGTTAAGATTGAAAATAATGAAGTATTCGTATATGTTGAAATCATGGTTTTTCTTAATATTTTTTTATAGCGCTTATAATGAAGTTAGCATTGTGAAGCTCCTTTACGTTATTAAGTTCACTTTTTTGTTTCTGTAGGCTAGATAAAACAAAATTCTATGTTGTCGGAGCTGGACTCTTTTCAGGTGTTACTGTGGCACTATACCCTGTCTCTGTTGTGAAGACTAGGATGCAGGTTGCTTCAAACCATACTGCGGAGAGAACTGCATTTTCTGTTGTGAAAGGATTGCTCAAAACAGATGGGATTCGTGGTTTGTATAAAGGGTTTGGCACTGCCGTCACCGGAGCAATTCCTGCAAGAATCATATTTCTCACTGCCTTGGAGACCACAAAGGTGGCTTCCTTCAAGATGCTTGAACCATTTAAACTATCTGAAACTACACAGGCTGCCATAGCAAATGGCATTGGTGGCATGACATCGTCGATCTGTGCACAAGCTGTGTTTGTTCCAATTGACGTGGTACGATAATTTGTTCTGACTGCCTTTATTACACTTTGAAAGTGTAAAAAAAAATGGACTCGTTGATGGTTGTGTACTTTTGTATGATACTTATACATAAGGAATATTGTGGTACATTTTAGTCATGCTGTTAATTTAGTTATTTTGACAGTGCAATGTGGGAAACAATCTTGTAAGTTTGTTTCTAACTATGTCAGATATTGGAATTTGAAATATATTAACTGATACTTTTTCACGTGTGCTGTGATTCAATTTGACTTTAGCTGCAAAACTTGTATGTTTACTTTCAAACACTATTTGGCACCCTTATTTTGATTCAAACTTGAGTTTGGCGGTTTATCCTTCTGTTTGATAGTTAGGGAAAATAATTAAATTGGTATGTTTAGTTCAATAAGCCTGATGCATCCGAAAATTTTGAAGGACTGAGAGCAATGATGTACGTTGATGTCCTTTATTTGCAGACATAAGGTGGTATTCTGTTTTAACAAGCAAGCGTTTTCAGTCTACGTTGTCTTGGTTGCTTCTTTAAGGGCAAGAGTTATACATGCTCAAATGAGATGAGAGAAAAAAAATACTCTTATCAGTATGTTTATTCTTTTTGTTTTTCCCTGTCTTTCATCGTGGCAAGTAAATTCCTTATGATGTTCATTTATGCCTGTTGATTTTCTGATTGATAAAATATATGTATTTTTCTTTTCAAAATATCAGATAATTGTATTTTTTCTGAAGCTCTCTTGCAATGCCATTTAAAAAAAGAATATTTGACCTTCATAATAATAGTTAATTGAAACAATAGGATTAAAAGTCTCAACTGATATAGAGTTTTGTATTTTGCATCACATCATAAAACTCCATATGAATTTAATGTCATATTATTCTTAGTTTCTCTTCTCTCATCTTCTACCTTATCCAAATGTTATAACTTTCTTCAATTCTTATATGCTTATTACCTTTACCTGAATGATTTTCAGATTAGCCAAAAGTTGATGGTGCAAGGGTACTCGGGCCATGCCCAATATAGTGGGGGTTTAGATGTTGCTCGTAAGTTGATAAGGTCTGAGGGAATCCGGGGGTTATACCGAGGGTTTGGTCTATCTGTTATGACTTATTCACCATCTAGCGCTGTTTGGTGGGCAAGTTACGGCTCAAGTCAACGCTTCTTATGGAGGTGAGACATGGTAATGAAATGAATAAGTTTAGGTTACTTTTATGTTACCTTTTCCTTTAGTTTCTATATTGTATCAGTTATCAAATGATTATAAAAGCAATGTCTACAGAGATTCCGTCTATTTAACTGCTAGGCTGGTAGGTTATTATGCCATTTGTAGCATGTGTGTGTTGACCTATGTAGCCCCGCAAATCAGATTGTAGGCATATCTGATGTCCTGTATAACTTTGTACTCCATTATAGCATAGATTTCCAAAGTAGCCCATATATCTGATTTCGTTGTATTCCATGGACATGGAAAAACTGCCTAAAATCTGATACAATTTTGAAGTTTAGCCTTGCCAGATCATATAATTGATTATTCAGCCTCAAAGGATTGGATTAAATTGCTTGGATACATGAATTTGTAGGAACTGAGGAAAGTTGAAAAAAGAAATTGACTGAGAAACCCTATCAAGAGTAAAAAAGAAATTTTGAAATGGTGGATTTATCATTAACTGAGTAATAAAATTTCAGTAGATCAGATGCATACTAATATTGTATTTCTGCACAATTAGGCGAACCATCAATATTAAGGACATTATTCACTGATTGCTTTGGCAGATTCTTAGAAGATGATACCAAATCTGAGAAAGGTACTCCTAGTCTGCCAAAGATTGTTTTAGTTCAAGCAGCAGGGGGTATTATTGCTGGTGCTACTGCATCATGCATTACAACTCCATTGGATACAATCAAGACTCGGTTACAGGTATTCATAACCTTGTTGGCTGTTTGTTATATTTTTACTAATAATGATGATTTGGTGTTAAAGTGACAACTGTAATGGTTTATTTGATACCTATTTTCTATGTTGGGCCAACTGCAATGGTTTAGATGTTTTTCTTTCTTTTGTATATCCCTGTAGACAATTGTTTCCTTCTCTCTCTTTCTCTGCATGTTCTTCTATTATCTTTTAGTAGTTTTAGATACTATGAACGCAAAGACAGTAAATCATGTGTTACCCCGGTATAAATTTGGTGATTATACAAGTTCTATCTTTTTAAAATGGGAAGAGTTTGAAGTAATTTACTACTAATATTATGTAGTTCTGTAATTTTATTTTACTCTTAATCCCAATTATATTTTTTTTGCTTGTCAACCAACTTGACTCATATTTTTTTTGACTGGTTTGCACCACAGGTGATGGGACATGGAAAGAAAAGCTCTGTTAAACAAGTTGTTAAAGAATTGATCAGTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGATTTGTCAGCATGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAGTAAGAATTCTTTCTTGTTCTCTGATTAGATACTGTCTGTGTTCATAAGCTTGTTTGCTTATTATTGTCTAGTGCATTCAAATTTTCAAATAAATACTTATTTAAAATTTAGTTTTCAACTTAATGAATATTTGAGTAAAATCTCATGCTCTAGGTCAGATACTCTCTGTTTATAATCTTGTTTTCTTATTCATATCTGGTGCATTCAAATTTTTTTTTTTTGAAGAAATTGGTGCATTCAAATATTGAAATAATTATTTAACTTGAAATAGTTCAAATAATAATTGATTTAGTTAATTATTTCTTGATTTATATTATTTGGTCTGTATCAATATTTTGGTATTAAACGAATCTGGCACACTTTGAATCATCCTGAACAATACTTTCGTTTATCTATGTGAATATTTTTAACTTATTTTTAATTGTTCTTCGTCTATTCACTCAGAGCGCCTATGCGCAAAAGATGAAGAAGCAGCTGGTATTGTTTCAATTGATTAG

Protein sequence

>MS.gene018284.t1

MAAPEINWDRLDKTKFYVVGAGLFSGVTVALYPVSVVKTRMQVASNHTAERTAFSVVKGLLKTDGIRGLYKGFGTAVTGAIPARIIFLTALETTKVASFKMLEPFKLSETTQAAIANGIGGMTSSICAQAVFVPIDVISQKLMVQGYSGHAQYSGGLDVARKLIRSEGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFLWRFLEDDTKSEKGTPSLPKIVLVQAAGGIIAGATASCITTPLDTIKTRLQVMGHGKKSSVKQVVKELISEDGWKGVYRGLGPRFVSMSAWGTSMILAYEYLKRLCAKDEEAAGIVSID