Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017129.t1 | XP_024639717.1 | 92.3 | 311 | 24 | 0 | 1 | 311 | 1 | 311 | 1.40E-33 | 153.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017129.t1 | G7K3D2 | 92.3 | 311 | 24 | 0 | 1 | 311 | 35 | 345 | 1.0e-33 | 153.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017129.t1 | MTR_5g091710 | 98.071 | 311 | 6 | 0 | 1 | 311 | 35 | 345 | 0.0 | 585 |
| MS.gene017129.t1 | MTR_5g008430 | 31.667 | 300 | 123 | 9 | 12 | 311 | 3 | 220 | 5.84e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017129.t1 | AT1G06530 | 40.226 | 266 | 150 | 2 | 22 | 287 | 37 | 293 | 1.19e-43 | 152 |
| MS.gene017129.t1 | AT3G58840 | 35.312 | 320 | 187 | 7 | 1 | 307 | 1 | 313 | 5.00e-33 | 124 |
| MS.gene017129.t1 | AT3G58840 | 35.312 | 320 | 187 | 7 | 1 | 307 | 1 | 313 | 5.00e-33 | 124 |
Find 99 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAGGAATAAGAGGATT+AGG | 0.207628 | 5.3:+73774914 | MS.gene017129:CDS |
| CTCGAGGAAGTTGGGGAGTC+TGG | 0.244504 | 5.3:+73775141 | MS.gene017129:CDS |
| TAGAAACAAGGTTGAGGAAT+TGG | 0.300679 | 5.3:+73774993 | MS.gene017129:CDS |
| TGAGGCGAGGGTGAAGGATT+TGG | 0.304418 | 5.3:+73774855 | MS.gene017129:CDS |
| GGAGAGGAATAAGAGGATTA+GGG | 0.313017 | 5.3:+73774915 | MS.gene017129:CDS |
| TTCAATTGCTCGAGGAAGTT+GGG | 0.338623 | 5.3:+73775133 | MS.gene017129:CDS |
| GTTGAATGAGAAACTGAGTT+TGG | 0.366048 | 5.3:+73775056 | MS.gene017129:CDS |
| GGAGAAGGAGGGTAGGGTTG+AGG | 0.378962 | 5.3:+73774786 | MS.gene017129:CDS |
| GGAGGGTAGGGTTGAGGTGT+TGG | 0.380355 | 5.3:+73774792 | MS.gene017129:CDS |
| GGAGATGAAGAAGGAGGCTG+AGG | 0.381045 | 5.3:+73774744 | MS.gene017129:CDS |
| GAAGGAGGCTGAGGGTTTGA+AGG | 0.382401 | 5.3:+73774753 | MS.gene017129:CDS |
| GAATAAGAGGATTAGGGTTG+AGG | 0.391880 | 5.3:+73774921 | MS.gene017129:CDS |
| AGAAAGATGAGGCAGGGGAT+TGG | 0.392543 | 5.3:+73775034 | MS.gene017129:CDS |
| ATTGTCGGTAGAGAGATAAA+TGG | 0.393839 | 5.3:+73775201 | MS.gene017129:CDS |
| TTTGAAGGAGAAGGAGGGTA+GGG | 0.399746 | 5.3:+73774780 | MS.gene017129:CDS |
| AATTGGTGTTCTTGAGATGA+AGG | 0.410301 | 5.3:+73774885 | MS.gene017129:CDS |
| GATGGAAGAACTGAGGAGTA+AGG | 0.423173 | 5.3:+73774561 | MS.gene017129:CDS |
| AGCAATAACCTCAGCCGCCT+TGG | 0.423197 | 5.3:-73774647 | None:intergenic |
| AGATTGAGGAGAGGAATAAG+AGG | 0.425346 | 5.3:+73774908 | MS.gene017129:CDS |
| AAGGATTTGGAGAAGAGAAT+TGG | 0.427858 | 5.3:+73774868 | MS.gene017129:CDS |
| GAGTAAGGGTGAGGAGATGA+GGG | 0.430659 | 5.3:+73774576 | MS.gene017129:CDS |
| GGAGAAGGAGAGAGATGAAT+TGG | 0.435084 | 5.3:+73774489 | MS.gene017129:CDS |
| TCTTGAGATGAAGGAGATTG+AGG | 0.436304 | 5.3:+73774894 | MS.gene017129:CDS |
| GTTCAATTGCTCGAGGAAGT+TGG | 0.436709 | 5.3:+73775132 | MS.gene017129:CDS |
| GAGAAGGATAGGGAAATTGA+TGG | 0.440189 | 5.3:+73774967 | MS.gene017129:CDS |
| TGAGGTGTTGGTGAAGGAAG+TGG | 0.440979 | 5.3:+73774804 | MS.gene017129:CDS |
| GGAGTAAGGGTGAGGAGATG+AGG | 0.442860 | 5.3:+73774575 | MS.gene017129:CDS |
| ATACGATTGGTGAGAAGGAT+AGG | 0.449768 | 5.3:+73774956 | MS.gene017129:CDS |
| CCGATTGTAGCTGCGGGAGC+AGG | 0.465022 | 5.3:+73775261 | MS.gene017129:CDS |
| GGAGGCTGAGGGTTTGAAGG+AGG | 0.465983 | 5.3:+73774756 | MS.gene017129:CDS |
| GGAGAATGAGGCGAGGGTGA+AGG | 0.468279 | 5.3:+73774849 | MS.gene017129:CDS |
| CGGCTGAGGTTATTGCTGCT+AGG | 0.470057 | 5.3:+73774653 | MS.gene017129:CDS |
| TTGTCGGTAGAGAGATAAAT+GGG | 0.471665 | 5.3:+73775202 | MS.gene017129:CDS |
| TAGGGTTGAGGTGTTGGTGA+AGG | 0.473133 | 5.3:+73774798 | MS.gene017129:CDS |
| GGCTGAGGTTATTGCTGCTA+GGG | 0.474814 | 5.3:+73774654 | MS.gene017129:CDS |
| GAAGATCTCGGCGTTGGAGA+AGG | 0.483102 | 5.3:+73774474 | MS.gene017129:CDS |
| AGGTTTGAAGAAGGTGAAAG+TGG | 0.483153 | 5.3:+73774828 | MS.gene017129:CDS |
| CAAGAAGTTGACGCTGGAGA+TGG | 0.485347 | 5.3:+73774543 | MS.gene017129:CDS |
| GATGCAGCATGATATGATTA+CGG | 0.487739 | 5.3:+73774705 | MS.gene017129:CDS |
| GGTTGAGAAGTCGCAAGATT+CGG | 0.492629 | 5.3:+73774624 | MS.gene017129:CDS |
| TAAGAGGATTAGGGTTGAGG+AGG | 0.493002 | 5.3:+73774924 | MS.gene017129:CDS |
| AGAACTGAGGAGTAAGGGTG+AGG | 0.500630 | 5.3:+73774567 | MS.gene017129:CDS |
| AGATTCGGCCAAGGCGGCTG+AGG | 0.505642 | 5.3:+73774639 | MS.gene017129:CDS |
| CAGTGGCCGATTGTAGCTGC+GGG | 0.508678 | 5.3:+73775255 | MS.gene017129:CDS |
| GAATCTGAGGAGAAAGCAAA+GGG | 0.509947 | 5.3:+73775093 | MS.gene017129:CDS |
| TGATTACGGATATGAGTGCT+GGG | 0.510378 | 5.3:+73774719 | MS.gene017129:CDS |
| TTAGGGTTGAGGAGGAACTG+AGG | 0.512287 | 5.3:+73774932 | MS.gene017129:CDS |
| TGCTGGGGAGGAGATGAAGA+AGG | 0.512356 | 5.3:+73774735 | MS.gene017129:CDS |
| CCTGCTCCCGCAGCTACAAT+CGG | 0.513335 | 5.3:-73775261 | None:intergenic |
| GAAGGTGAAAGTGGAGAATG+AGG | 0.515616 | 5.3:+73774837 | MS.gene017129:CDS |
| TGGGATACATGGTGAAGAGA+AGG | 0.524269 | 5.3:+73775221 | MS.gene017129:CDS |
| ATGGAAGAACTGAGGAGTAA+GGG | 0.525619 | 5.3:+73774562 | MS.gene017129:CDS |
| ATGATTACGGATATGAGTGC+TGG | 0.527596 | 5.3:+73774718 | MS.gene017129:CDS |
| GCAAGAGAATAACGAGAAGA+AGG | 0.527814 | 5.3:+73774513 | MS.gene017129:CDS |
| GGAAGTGGAAGGTTTGAAGA+AGG | 0.530047 | 5.3:+73774819 | MS.gene017129:CDS |
| TAGGGTTGAGGAGGAACTGA+GGG | 0.534680 | 5.3:+73774933 | MS.gene017129:CDS |
| GAGGGATACGATTGGTGAGA+AGG | 0.535354 | 5.3:+73774951 | MS.gene017129:CDS |
| GCTGAGAAGAAAGATGAGGC+AGG | 0.537405 | 5.3:+73775027 | MS.gene017129:CDS |
| TACGATTGGTGAGAAGGATA+GGG | 0.539661 | 5.3:+73774957 | MS.gene017129:CDS |
| TCGAGGAAGTTGGGGAGTCT+GGG | 0.540080 | 5.3:+73775142 | MS.gene017129:CDS |
| GAAAGTGGAGAATGAGGCGA+GGG | 0.548054 | 5.3:+73774843 | MS.gene017129:CDS |
| TGATCAGTATGAGGATCAAT+CGG | 0.548497 | 5.3:+73774447 | MS.gene017129:CDS |
| GTTGAGGAATTGGAGAAGGT+TGG | 0.550217 | 5.3:+73775003 | MS.gene017129:CDS |
| AGATGAAGGAGATTGAGGAG+AGG | 0.557636 | 5.3:+73774899 | MS.gene017129:CDS |
| CAAGGTTGAGGAATTGGAGA+AGG | 0.559701 | 5.3:+73774999 | MS.gene017129:CDS |
| GGTTATTGCTGCTAGGGCGG+CGG | 0.561674 | 5.3:+73774660 | MS.gene017129:CDS |
| GCGGATGACGGTGTTTCAAA+CGG | 0.563812 | 5.3:+73774415 | MS.gene017129:CDS |
| AGAATCTGAGGAGAAAGCAA+AGG | 0.564574 | 5.3:+73775092 | MS.gene017129:CDS |
| GAAGGCACTTAGAGAATCTG+AGG | 0.564898 | 5.3:+73775080 | MS.gene017129:CDS |
| GGTGACGAAGATCTCGGCGT+TGG | 0.567432 | 5.3:+73774468 | MS.gene017129:CDS |
| TCTATGTGTACTGCGCCAAA+CGG | 0.569971 | 5.3:+73775319 | MS.gene017129:CDS |
| TCAATTGCTCGAGGAAGTTG+GGG | 0.578973 | 5.3:+73775134 | MS.gene017129:CDS |
| GCAGTGGCCGATTGTAGCTG+CGG | 0.579823 | 5.3:+73775254 | MS.gene017129:CDS |
| CTGAGAAGAAAGATGAGGCA+GGG | 0.581312 | 5.3:+73775028 | MS.gene017129:CDS |
| TGAGAAGAAAGATGAGGCAG+GGG | 0.584420 | 5.3:+73775029 | MS.gene017129:CDS |
| TGAAAGTGGAGAATGAGGCG+AGG | 0.586115 | 5.3:+73774842 | MS.gene017129:CDS |
| TGAGAAACTGAGTTTGGAGA+AGG | 0.588145 | 5.3:+73775062 | MS.gene017129:CDS |
| TACGGATATGAGTGCTGGGG+AGG | 0.589635 | 5.3:+73774723 | MS.gene017129:CDS |
| GAATTAACAATGGCGGATGA+CGG | 0.590070 | 5.3:+73774403 | None:intergenic |
| GAGATGAAGAAGGAGGCTGA+GGG | 0.596052 | 5.3:+73774745 | MS.gene017129:CDS |
| AGAGAGATAAATGGGATACA+TGG | 0.603290 | 5.3:+73775210 | MS.gene017129:CDS |
| TCAATCGGTGACGAAGATCT+CGG | 0.608769 | 5.3:+73774462 | MS.gene017129:CDS |
| TGTTGTTGATGATCAGTATG+AGG | 0.610760 | 5.3:+73774438 | MS.gene017129:CDS |
| GGAAATCAAGAAGTTGACGC+TGG | 0.614782 | 5.3:+73774537 | MS.gene017129:CDS |
| ATCTTGAGACGCAGATTGCG+AGG | 0.614915 | 5.3:+73774683 | MS.gene017129:CDS |
| ACAAATTGTTCAATTGCTCG+AGG | 0.616567 | 5.3:+73775125 | MS.gene017129:CDS |
| GAGGAACTGAGGGATACGAT+TGG | 0.618110 | 5.3:+73774943 | MS.gene017129:CDS |
| AGCTGCGGGAGCAGGAACTA+CGG | 0.624120 | 5.3:+73775269 | MS.gene017129:CDS |
| AGAGAATAACGAGAAGAAGG+AGG | 0.646661 | 5.3:+73774516 | MS.gene017129:CDS |
| TGGTGCTGAGAAGAAAGATG+AGG | 0.648321 | 5.3:+73775023 | MS.gene017129:CDS |
| GTCGCAAGATTCGGCCAAGG+CGG | 0.649998 | 5.3:+73774633 | MS.gene017129:CDS |
| CGCTGGAGATGGAAGAACTG+AGG | 0.651850 | 5.3:+73774554 | MS.gene017129:CDS |
| GAAGTCGCAAGATTCGGCCA+AGG | 0.661169 | 5.3:+73774630 | MS.gene017129:CDS |
| ATGTGTACTGCGCCAAACGG+AGG | 0.670381 | 5.3:+73775322 | MS.gene017129:CDS |
| TGAGGTTATTGCTGCTAGGG+CGG | 0.671369 | 5.3:+73774657 | MS.gene017129:CDS |
| GATTGAAGAGATGCGTGATG+TGG | 0.691213 | 5.3:+73774603 | MS.gene017129:CDS |
| TGGGGAGGAGATGAAGAAGG+AGG | 0.692227 | 5.3:+73774738 | MS.gene017129:CDS |
| GTGTTGGTGAAGGAAGTGGA+AGG | 0.705939 | 5.3:+73774808 | MS.gene017129:CDS |
| GATTACGGATATGAGTGCTG+GGG | 0.731149 | 5.3:+73774720 | MS.gene017129:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATGGTTTTAGAAACA+AGG | + | chr5.3:73774981-73775000 | MS.gene017129:CDS | 25.0% |
| AAGGATTTGGAGAAGAGAAT+TGG | + | chr5.3:73774868-73774887 | MS.gene017129:CDS | 35.0% | |
| ACAAATTGTTCAATTGCTCG+AGG | + | chr5.3:73775125-73775144 | MS.gene017129:CDS | 35.0% | |
| AGAGAGATAAATGGGATACA+TGG | + | chr5.3:73775210-73775229 | MS.gene017129:CDS | 35.0% | |
| ATTGTCGGTAGAGAGATAAA+TGG | + | chr5.3:73775201-73775220 | MS.gene017129:CDS | 35.0% | |
| GAAAAAGTTGCTGAGATTGT+CGG | + | chr5.3:73775186-73775205 | MS.gene017129:CDS | 35.0% | |
| GATGCAGCATGATATGATTA+CGG | + | chr5.3:73774705-73774724 | MS.gene017129:CDS | 35.0% | |
| GTTGAATGAGAAACTGAGTT+TGG | + | chr5.3:73775056-73775075 | MS.gene017129:CDS | 35.0% | |
| TAGAAACAAGGTTGAGGAAT+TGG | + | chr5.3:73774993-73775012 | MS.gene017129:CDS | 35.0% | |
| TGATCAGTATGAGGATCAAT+CGG | + | chr5.3:73774447-73774466 | MS.gene017129:CDS | 35.0% | |
| TTGTCGGTAGAGAGATAAAT+GGG | + | chr5.3:73775202-73775221 | MS.gene017129:CDS | 35.0% | |
| ! | AATTGGTGTTCTTGAGATGA+AGG | + | chr5.3:73774885-73774904 | MS.gene017129:CDS | 35.0% |
| !! | TGTTGTTGATGATCAGTATG+AGG | + | chr5.3:73774438-73774457 | MS.gene017129:CDS | 35.0% |
| !!! | AGAAGGATTTTAAGTTGCAG+TGG | + | chr5.3:73775238-73775257 | MS.gene017129:CDS | 35.0% |
| !!! | TGGTTTTAGAAACAAGGTTG+AGG | + | chr5.3:73774987-73775006 | MS.gene017129:CDS | 35.0% |
| AGAATCTGAGGAGAAAGCAA+AGG | + | chr5.3:73775092-73775111 | MS.gene017129:CDS | 40.0% | |
| AGAGAATAACGAGAAGAAGG+AGG | + | chr5.3:73774516-73774535 | MS.gene017129:CDS | 40.0% | |
| AGATTGAGGAGAGGAATAAG+AGG | + | chr5.3:73774908-73774927 | MS.gene017129:CDS | 40.0% | |
| AGGAGAGGAATAAGAGGATT+AGG | + | chr5.3:73774914-73774933 | MS.gene017129:CDS | 40.0% | |
| AGGTTTGAAGAAGGTGAAAG+TGG | + | chr5.3:73774828-73774847 | MS.gene017129:CDS | 40.0% | |
| ATACGATTGGTGAGAAGGAT+AGG | + | chr5.3:73774956-73774975 | MS.gene017129:CDS | 40.0% | |
| ATGATTACGGATATGAGTGC+TGG | + | chr5.3:73774718-73774737 | MS.gene017129:CDS | 40.0% | |
| ATGGAAGAACTGAGGAGTAA+GGG | + | chr5.3:73774562-73774581 | MS.gene017129:CDS | 40.0% | |
| GAATAAGAGGATTAGGGTTG+AGG | + | chr5.3:73774921-73774940 | MS.gene017129:CDS | 40.0% | |
| GAATCTGAGGAGAAAGCAAA+GGG | + | chr5.3:73775093-73775112 | MS.gene017129:CDS | 40.0% | |
| GAGAAGGATAGGGAAATTGA+TGG | + | chr5.3:73774967-73774986 | MS.gene017129:CDS | 40.0% | |
| GCAAGAGAATAACGAGAAGA+AGG | + | chr5.3:73774513-73774532 | MS.gene017129:CDS | 40.0% | |
| GGAGAGGAATAAGAGGATTA+GGG | + | chr5.3:73774915-73774934 | MS.gene017129:CDS | 40.0% | |
| TACGATTGGTGAGAAGGATA+GGG | + | chr5.3:73774957-73774976 | MS.gene017129:CDS | 40.0% | |
| TCTTGAGATGAAGGAGATTG+AGG | + | chr5.3:73774894-73774913 | MS.gene017129:CDS | 40.0% | |
| TGAGAAACTGAGTTTGGAGA+AGG | + | chr5.3:73775062-73775081 | MS.gene017129:CDS | 40.0% | |
| TGATTACGGATATGAGTGCT+GGG | + | chr5.3:73774719-73774738 | MS.gene017129:CDS | 40.0% | |
| TTCAATTGCTCGAGGAAGTT+GGG | + | chr5.3:73775133-73775152 | MS.gene017129:CDS | 40.0% | |
| AGATGAAGGAGATTGAGGAG+AGG | + | chr5.3:73774899-73774918 | MS.gene017129:CDS | 45.0% | |
| CAAGGTTGAGGAATTGGAGA+AGG | + | chr5.3:73774999-73775018 | MS.gene017129:CDS | 45.0% | |
| CTGAGAAGAAAGATGAGGCA+GGG | + | chr5.3:73775028-73775047 | MS.gene017129:CDS | 45.0% | |
| GAAGGTGAAAGTGGAGAATG+AGG | + | chr5.3:73774837-73774856 | MS.gene017129:CDS | 45.0% | |
| GATGGAAGAACTGAGGAGTA+AGG | + | chr5.3:73774561-73774580 | MS.gene017129:CDS | 45.0% | |
| GATTGAAGAGATGCGTGATG+TGG | + | chr5.3:73774603-73774622 | MS.gene017129:CDS | 45.0% | |
| GGAAATCAAGAAGTTGACGC+TGG | + | chr5.3:73774537-73774556 | MS.gene017129:CDS | 45.0% | |
| GGAAGTGGAAGGTTTGAAGA+AGG | + | chr5.3:73774819-73774838 | MS.gene017129:CDS | 45.0% | |
| GGAGAAGGAGAGAGATGAAT+TGG | + | chr5.3:73774489-73774508 | MS.gene017129:CDS | 45.0% | |
| GGTTGAGAAGTCGCAAGATT+CGG | + | chr5.3:73774624-73774643 | MS.gene017129:CDS | 45.0% | |
| GTTCAATTGCTCGAGGAAGT+TGG | + | chr5.3:73775132-73775151 | MS.gene017129:CDS | 45.0% | |
| GTTGAGGAATTGGAGAAGGT+TGG | + | chr5.3:73775003-73775022 | MS.gene017129:CDS | 45.0% | |
| TAAGAGGATTAGGGTTGAGG+AGG | + | chr5.3:73774924-73774943 | MS.gene017129:CDS | 45.0% | |
| TCAATCGGTGACGAAGATCT+CGG | + | chr5.3:73774462-73774481 | MS.gene017129:CDS | 45.0% | |
| TCAATTGCTCGAGGAAGTTG+GGG | + | chr5.3:73775134-73775153 | MS.gene017129:CDS | 45.0% | |
| TCTATGTGTACTGCGCCAAA+CGG | + | chr5.3:73775319-73775338 | MS.gene017129:CDS | 45.0% | |
| TGAGAAGAAAGATGAGGCAG+GGG | + | chr5.3:73775029-73775048 | MS.gene017129:CDS | 45.0% | |
| TGGGATACATGGTGAAGAGA+AGG | + | chr5.3:73775221-73775240 | MS.gene017129:CDS | 45.0% | |
| TTTGAAGGAGAAGGAGGGTA+GGG | + | chr5.3:73774780-73774799 | MS.gene017129:CDS | 45.0% | |
| ! | GATTACGGATATGAGTGCTG+GGG | + | chr5.3:73774720-73774739 | MS.gene017129:CDS | 45.0% |
| ! | GGAACTACGGTAGCAGTTTT+TGG | + | chr5.3:73775282-73775301 | MS.gene017129:CDS | 45.0% |
| ! | TGGTGCTGAGAAGAAAGATG+AGG | + | chr5.3:73775023-73775042 | MS.gene017129:CDS | 45.0% |
| !! | GAAGGCACTTAGAGAATCTG+AGG | + | chr5.3:73775080-73775099 | MS.gene017129:CDS | 45.0% |
| !! | GGGTTTGAAGGAGGTTTTGA+AGG | + | chr5.3:73774765-73774784 | MS.gene017129:CDS | 45.0% |
| !! | TTTTGAAGGAGAAGGAGGGT+AGG | + | chr5.3:73774779-73774798 | MS.gene017129:CDS | 45.0% |
| !!! | GAAGGAGGTTTTGAAGGAGA+AGG | + | chr5.3:73774771-73774790 | MS.gene017129:CDS | 45.0% |
| !!! | GAGGTTTTGAAGGAGAAGGA+GGG | + | chr5.3:73774775-73774794 | MS.gene017129:CDS | 45.0% |
| AGAAAGATGAGGCAGGGGAT+TGG | + | chr5.3:73775034-73775053 | MS.gene017129:CDS | 50.0% | |
| AGAACTGAGGAGTAAGGGTG+AGG | + | chr5.3:73774567-73774586 | MS.gene017129:CDS | 50.0% | |
| ATCTTGAGACGCAGATTGCG+AGG | + | chr5.3:73774683-73774702 | MS.gene017129:CDS | 50.0% | |
| CAAGAAGTTGACGCTGGAGA+TGG | + | chr5.3:73774543-73774562 | MS.gene017129:CDS | 50.0% | |
| GAAAGTGGAGAATGAGGCGA+GGG | + | chr5.3:73774843-73774862 | MS.gene017129:CDS | 50.0% | |
| GAGATGAAGAAGGAGGCTGA+GGG | + | chr5.3:73774745-73774764 | MS.gene017129:CDS | 50.0% | |
| GAGGAACTGAGGGATACGAT+TGG | + | chr5.3:73774943-73774962 | MS.gene017129:CDS | 50.0% | |
| GAGGGATACGATTGGTGAGA+AGG | + | chr5.3:73774951-73774970 | MS.gene017129:CDS | 50.0% | |
| GAGTAAGGGTGAGGAGATGA+GGG | + | chr5.3:73774576-73774595 | MS.gene017129:CDS | 50.0% | |
| GCTGAGAAGAAAGATGAGGC+AGG | + | chr5.3:73775027-73775046 | MS.gene017129:CDS | 50.0% | |
| GGCTGAGGTTATTGCTGCTA+GGG | + | chr5.3:73774654-73774673 | MS.gene017129:CDS | 50.0% | |
| TAGGGTTGAGGAGGAACTGA+GGG | + | chr5.3:73774933-73774952 | MS.gene017129:CDS | 50.0% | |
| TGAAAGTGGAGAATGAGGCG+AGG | + | chr5.3:73774842-73774861 | MS.gene017129:CDS | 50.0% | |
| TGAGGTTATTGCTGCTAGGG+CGG | + | chr5.3:73774657-73774676 | MS.gene017129:CDS | 50.0% | |
| TTAGGGTTGAGGAGGAACTG+AGG | + | chr5.3:73774932-73774951 | MS.gene017129:CDS | 50.0% | |
| ! | GCGGATGACGGTGTTTCAAA+CGG | + | chr5.3:73774415-73774434 | MS.gene017129:CDS | 50.0% |
| ! | GTGTTGGTGAAGGAAGTGGA+AGG | + | chr5.3:73774808-73774827 | MS.gene017129:CDS | 50.0% |
| !! | TAGGGTTGAGGTGTTGGTGA+AGG | + | chr5.3:73774798-73774817 | MS.gene017129:CDS | 50.0% |
| !! | TGAGGTGTTGGTGAAGGAAG+TGG | + | chr5.3:73774804-73774823 | MS.gene017129:CDS | 50.0% |
| !!! | GGAGGTTTTGAAGGAGAAGG+AGG | + | chr5.3:73774774-73774793 | MS.gene017129:CDS | 50.0% |
| AGCAATAACCTCAGCCGCCT+TGG | - | chr5.3:73774650-73774669 | None:intergenic | 55.0% | |
| ATGTGTACTGCGCCAAACGG+AGG | + | chr5.3:73775322-73775341 | MS.gene017129:CDS | 55.0% | |
| CGCTGGAGATGGAAGAACTG+AGG | + | chr5.3:73774554-73774573 | MS.gene017129:CDS | 55.0% | |
| CGGCTGAGGTTATTGCTGCT+AGG | + | chr5.3:73774653-73774672 | MS.gene017129:CDS | 55.0% | |
| GAAGGAGGCTGAGGGTTTGA+AGG | + | chr5.3:73774753-73774772 | MS.gene017129:CDS | 55.0% | |
| GAAGTCGCAAGATTCGGCCA+AGG | + | chr5.3:73774630-73774649 | MS.gene017129:CDS | 55.0% | |
| GGAGATGAAGAAGGAGGCTG+AGG | + | chr5.3:73774744-73774763 | MS.gene017129:CDS | 55.0% | |
| GGAGTAAGGGTGAGGAGATG+AGG | + | chr5.3:73774575-73774594 | MS.gene017129:CDS | 55.0% | |
| TCGAGGAAGTTGGGGAGTCT+GGG | + | chr5.3:73775142-73775161 | MS.gene017129:CDS | 55.0% | |
| TGAGGCGAGGGTGAAGGATT+TGG | + | chr5.3:73774855-73774874 | MS.gene017129:CDS | 55.0% | |
| TGCTGGGGAGGAGATGAAGA+AGG | + | chr5.3:73774735-73774754 | MS.gene017129:CDS | 55.0% | |
| TGGGGAGGAGATGAAGAAGG+AGG | + | chr5.3:73774738-73774757 | MS.gene017129:CDS | 55.0% | |
| ! | GAAGATCTCGGCGTTGGAGA+AGG | + | chr5.3:73774474-73774493 | MS.gene017129:CDS | 55.0% |
| !! | TACGGATATGAGTGCTGGGG+AGG | + | chr5.3:73774723-73774742 | MS.gene017129:CDS | 55.0% |
| AGCTGCGGGAGCAGGAACTA+CGG | + | chr5.3:73775269-73775288 | MS.gene017129:CDS | 60.0% | |
| CAGTGGCCGATTGTAGCTGC+GGG | + | chr5.3:73775255-73775274 | MS.gene017129:CDS | 60.0% | |
| CCTGCTCCCGCAGCTACAAT+CGG | - | chr5.3:73775264-73775283 | None:intergenic | 60.0% | |
| CTCGAGGAAGTTGGGGAGTC+TGG | + | chr5.3:73775141-73775160 | MS.gene017129:CDS | 60.0% | |
| GCAGTGGCCGATTGTAGCTG+CGG | + | chr5.3:73775254-73775273 | MS.gene017129:CDS | 60.0% | |
| GGAGAAGGAGGGTAGGGTTG+AGG | + | chr5.3:73774786-73774805 | MS.gene017129:CDS | 60.0% | |
| GGAGAATGAGGCGAGGGTGA+AGG | + | chr5.3:73774849-73774868 | MS.gene017129:CDS | 60.0% | |
| GGAGGCTGAGGGTTTGAAGG+AGG | + | chr5.3:73774756-73774775 | MS.gene017129:CDS | 60.0% | |
| GGAGGGTAGGGTTGAGGTGT+TGG | + | chr5.3:73774792-73774811 | MS.gene017129:CDS | 60.0% | |
| GGTGACGAAGATCTCGGCGT+TGG | + | chr5.3:73774468-73774487 | MS.gene017129:CDS | 60.0% | |
| GGTTATTGCTGCTAGGGCGG+CGG | + | chr5.3:73774660-73774679 | MS.gene017129:CDS | 60.0% | |
| GTCGCAAGATTCGGCCAAGG+CGG | + | chr5.3:73774633-73774652 | MS.gene017129:CDS | 60.0% | |
| AGATTCGGCCAAGGCGGCTG+AGG | + | chr5.3:73774639-73774658 | MS.gene017129:CDS | 65.0% | |
| CCGATTGTAGCTGCGGGAGC+AGG | + | chr5.3:73775261-73775280 | MS.gene017129:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73774412 | 73775347 | 73774412 | ID=MS.gene017129 |
| chr5.3 | mRNA | 73774412 | 73775347 | 73774412 | ID=MS.gene017129.t1;Parent=MS.gene017129 |
| chr5.3 | exon | 73774412 | 73775347 | 73774412 | ID=MS.gene017129.t1.exon1;Parent=MS.gene017129.t1 |
| chr5.3 | CDS | 73774412 | 73775347 | 73774412 | ID=cds.MS.gene017129.t1;Parent=MS.gene017129.t1 |
| Gene Sequence |
| Protein sequence |
