AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014991

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014991.t1 MTR_3g104810 99.427 349 1 1 1 349 1 348 0.0 715
MS.gene014991.t1 MTR_8g019480 66.372 339 104 3 16 349 16 349 1.62e-158 448
MS.gene014991.t1 MTR_6g015860 40.663 332 169 4 21 349 5 311 3.39e-85 260
MS.gene014991.t1 MTR_7g015870 40.303 330 165 5 21 345 9 311 4.70e-81 250
MS.gene014991.t1 MTR_7g015870 40.673 327 162 5 27 348 19 318 9.34e-81 249
MS.gene014991.t1 MTR_2g032610 37.576 330 175 8 21 344 17 321 2.04e-69 220
MS.gene014991.t1 MTR_1g097890 24.642 349 197 10 6 348 20 308 1.80e-22 96.3
MS.gene014991.t1 MTR_8g092080 24.510 306 173 8 43 348 62 309 5.35e-18 84.0
MS.gene014991.t1 MTR_8g092080 25.806 217 134 6 30 239 128 324 1.06e-11 65.5
MS.gene014991.t1 MTR_7g068340 27.778 216 125 6 35 242 187 379 7.29e-17 81.3
MS.gene014991.t1 MTR_7g068340 21.951 287 173 5 57 343 120 355 1.30e-12 68.6
MS.gene014991.t1 MTR_5g073040 25.000 304 170 7 46 338 52 308 1.56e-16 79.7
MS.gene014991.t1 MTR_1g012030 23.077 299 188 5 46 343 152 409 1.65e-16 80.5
MS.gene014991.t1 MTR_8g098240 24.765 319 192 8 25 341 312 584 8.28e-16 79.0
MS.gene014991.t1 MTR_3g098460 24.629 337 209 10 10 342 183 478 1.21e-15 78.2
MS.gene014991.t1 MTR_3g098460 29.767 215 113 8 132 346 207 383 2.30e-11 65.1
MS.gene014991.t1 MTR_3g107510 22.297 296 188 5 49 343 138 392 2.17e-15 77.0
MS.gene014991.t1 MTR_4g114320 23.510 302 187 8 49 348 139 398 6.85e-15 75.5
MS.gene014991.t1 MTR_5g009500 23.492 315 201 6 42 341 46 335 2.61e-14 73.6
MS.gene014991.t1 MTR_4g012850 23.377 308 199 7 37 342 18 290 3.21e-14 72.8
MS.gene014991.t1 MTR_8g027975 24.606 317 197 8 42 341 59 350 3.49e-14 73.2
MS.gene014991.t1 MTR_4g016730 28.061 196 106 5 35 228 196 358 1.29e-13 71.6
MS.gene014991.t1 MTR_6g034515 23.077 286 167 9 45 322 79 319 2.12e-13 70.9
MS.gene014991.t1 MTR_5g055410 28.000 200 118 6 49 238 135 318 2.46e-13 70.5
MS.gene014991.t1 MTR_7g084400 28.293 205 118 5 28 223 299 483 9.52e-13 69.3
MS.gene014991.t1 MTR_2g436930 27.807 187 125 4 48 227 53 236 1.22e-12 67.4
MS.gene014991.t1 MTR_2g436930 27.807 187 125 4 48 227 143 326 1.69e-12 67.8
MS.gene014991.t1 MTR_4g088545 23.292 322 208 11 37 349 14 305 1.77e-12 67.8
MS.gene014991.t1 MTR_7g109135 30.570 193 105 7 49 231 40 213 3.18e-12 65.9
MS.gene014991.t1 MTR_8g096050 27.041 196 122 6 33 223 321 500 3.87e-12 67.4
MS.gene014991.t1 MTR_8g096050 28.936 235 125 8 114 346 211 405 1.12e-11 66.2
MS.gene014991.t1 MTR_7g109135 30.570 193 105 7 49 231 61 234 7.86e-12 64.7
MS.gene014991.t1 MTR_4g057850 24.585 301 175 10 44 333 33 292 9.55e-12 65.5
MS.gene014991.t1 MTR_7g109135 25.215 349 197 14 12 342 2 304 1.29e-11 65.1
MS.gene014991.t1 MTR_7g109135 30.570 193 105 7 49 231 139 312 1.29e-11 65.1
MS.gene014991.t1 MTR_2g102010 24.415 299 184 8 48 342 32 292 2.26e-11 64.3
MS.gene014991.t1 MTR_8g076760 25.949 316 189 14 47 349 28 311 2.27e-11 64.3
MS.gene014991.t1 MTR_6g034740 67.347 49 12 1 185 233 106 150 2.82e-11 61.6
MS.gene014991.t1 MTR_3g104600 23.105 277 177 6 73 341 78 326 7.79e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014991.t1 AT5G26200 67.463 335 96 3 15 349 21 342 1.45e-161 455
MS.gene014991.t1 AT1G72820 63.953 344 114 3 9 349 7 343 5.28e-155 439
MS.gene014991.t1 AT1G72820 63.953 344 114 3 9 349 7 343 5.28e-155 439
MS.gene014991.t1 AT5G15640 42.025 326 163 6 21 343 16 318 1.92e-80 248
MS.gene014991.t1 AT5G15640 41.846 325 162 7 22 343 11 311 1.28e-77 241
MS.gene014991.t1 AT1G34065 26.059 307 165 10 43 347 85 331 5.14e-19 87.0
MS.gene014991.t1 AT1G34065 26.059 307 165 10 43 347 92 338 7.46e-19 86.7
MS.gene014991.t1 AT4G11440 25.150 334 207 9 11 341 307 600 1.33e-18 87.4
MS.gene014991.t1 AT4G11440 25.150 334 207 9 11 341 307 600 1.33e-18 87.4
MS.gene014991.t1 AT4G39460 23.718 312 168 7 43 348 68 315 8.58e-18 83.6
MS.gene014991.t1 AT4G39460 23.718 312 168 7 43 348 68 315 8.58e-18 83.6
MS.gene014991.t1 AT4G39460 23.718 312 168 7 43 348 68 315 8.58e-18 83.6
MS.gene014991.t1 AT2G30160 26.453 344 211 9 2 341 13 318 3.06e-17 82.0
MS.gene014991.t1 AT2G30160 31.122 196 114 7 37 224 138 320 1.47e-13 71.2
MS.gene014991.t1 AT1G07030 24.419 344 211 7 2 341 15 313 1.15e-15 77.4
MS.gene014991.t1 AT4G32400 22.034 295 190 6 49 343 130 384 3.03e-15 76.6
MS.gene014991.t1 AT2G37890 24.820 278 175 5 73 349 93 337 1.27e-14 74.3
MS.gene014991.t1 AT2G37890 27.461 193 120 7 40 227 157 334 2.52e-12 67.4
MS.gene014991.t1 AT3G51870 21.254 287 175 5 57 343 124 359 4.29e-14 73.2
MS.gene014991.t1 AT3G51870 26.531 196 119 3 35 228 191 363 1.24e-13 71.6
MS.gene014991.t1 AT5G61810 22.823 333 212 9 10 342 43 330 2.74e-13 70.5
MS.gene014991.t1 AT4G26180 23.607 305 192 7 46 341 34 306 2.92e-13 70.1
MS.gene014991.t1 AT5G61810 22.823 333 212 9 10 342 186 473 1.26e-12 68.9
MS.gene014991.t1 AT5G66380 24.841 314 197 10 45 347 22 307 1.65e-12 67.8
MS.gene014991.t1 AT3G20240 27.473 182 112 4 41 219 169 333 3.43e-12 67.0
MS.gene014991.t1 AT3G20240 23.602 322 183 11 18 320 38 315 4.36e-12 67.0
MS.gene014991.t1 AT1G14560 22.727 308 196 9 46 341 40 317 3.58e-12 67.0
MS.gene014991.t1 AT2G33820 22.840 324 207 11 37 349 20 311 6.64e-12 65.9
MS.gene014991.t1 AT4G26180 24.028 283 174 7 46 319 34 284 1.61e-11 64.7
MS.gene014991.t1 AT5G42130 22.807 285 170 7 47 324 132 373 4.32e-11 64.3
MS.gene014991.t1 AT1G25380 23.432 303 188 9 49 342 37 304 5.54e-11 63.5
MS.gene014991.t1 AT1G25380 23.432 303 188 9 49 342 37 304 5.54e-11 63.5

Find 74 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTAATAGGGAACAAAATT+TGG 0.199353 3.2:-86548915 MS.gene014991:CDS
TAAGACTAGGTTGCAGGTTT+TGG 0.217713 3.2:-86548777 MS.gene014991:CDS
GTATGGTTCATAGGTTTATT+TGG 0.230404 3.2:-86548958 MS.gene014991:CDS
TTGGTTCATGCTTGGGTAAT+AGG 0.248201 3.2:-86548928 MS.gene014991:CDS
ACTGTTTGCACAAAAGTTAA+AGG 0.263128 3.2:+86548728 None:intergenic
TCAAAACAACCATTGGATAA+AGG 0.275303 3.2:+86549476 None:intergenic
TGTGCAAACAGTTAGGAATT+TGG 0.278611 3.2:-86548717 MS.gene014991:CDS
AGGTTTATTTGGAGTAGTTT+TGG 0.311496 3.2:-86548947 MS.gene014991:CDS
TTGGTGGACTTCTTATAGTA+TGG 0.314590 3.2:-86548975 MS.gene014991:CDS
AGCTGAAACACCGGAGAATA+AGG 0.314599 3.2:+86549501 None:intergenic
CAAAACAACCATTGGATAAA+GGG 0.315548 3.2:+86549477 None:intergenic
CTTCTTATAGTATGGTTCAT+AGG 0.318903 3.2:-86548967 MS.gene014991:CDS
TACAATTAAGACTAGGTTGC+AGG 0.330047 3.2:-86548783 MS.gene014991:CDS
AGGGAACAAAATTTGGATAA+TGG 0.330715 3.2:-86548908 MS.gene014991:CDS
TGTTGTTAGTCAAAGACTTA+TGG 0.351347 3.2:-86549167 MS.gene014991:CDS
CTATGTCCGCCCAATTGGTT+TGG 0.361945 3.2:-86549201 MS.gene014991:CDS
TTCTGCTATGTCCGCCCAAT+TGG 0.372927 3.2:-86549206 MS.gene014991:CDS
TTTGCTTGTTACAGAGGATT+GGG 0.374040 3.2:-86548677 MS.gene014991:CDS
TGGTTCATGCTTGGGTAATA+GGG 0.384193 3.2:-86548927 MS.gene014991:CDS
AGGAAAATTCTTTGTGCTGA+TGG 0.385544 3.2:-86549061 MS.gene014991:CDS
CAATTGGTGTCCAAACCAAT+TGG 0.388456 3.2:+86549191 None:intergenic
GTTTGCTTGTTACAGAGGAT+TGG 0.397342 3.2:-86548678 MS.gene014991:CDS
ATGCACCTTCTAATGCTGTT+TGG 0.400660 3.2:-86548994 MS.gene014991:CDS
AACTCTGAGAATTATAGAAA+TGG 0.418052 3.2:-86549097 MS.gene014991:CDS
AAGATGAATCAACATCTTGT+TGG 0.430897 3.2:+86549596 None:intergenic
CTTTGACTAACAACATCAAT+TGG 0.440871 3.2:+86549175 None:intergenic
ACATACCAGCTGAAATTGAT+TGG 0.441612 3.2:-86549564 MS.gene014991:CDS
GCTGTTGCTAGTGCTGCTGC+TGG 0.443255 3.2:-86549235 MS.gene014991:CDS
GTTAGGAATTTGGTGAATGA+AGG 0.452742 3.2:-86548707 MS.gene014991:CDS
GCCTCATTCTAAGGCAGTGG+TGG 0.452956 3.2:-86548870 MS.gene014991:CDS
GTCCACCAAACAGCATTAGA+AGG 0.458897 3.2:+86548989 None:intergenic
GTTCAAGGTAGTTGTAATAG+TGG 0.461965 3.2:-86549145 MS.gene014991:CDS
TGCTGTCATATAAAGTGCTC+TGG 0.466852 3.2:+86549327 None:intergenic
TTCAGCTGCCCTTTATCCAA+TGG 0.466887 3.2:-86549485 MS.gene014991:CDS
AAGGCAGTGGTGGGTGTACA+AGG 0.474379 3.2:-86548860 MS.gene014991:CDS
TAGGCCTCATTCTAAGGCAG+TGG 0.479281 3.2:-86548873 MS.gene014991:CDS
CACCTTCTAATGCTGTTTGG+TGG 0.483134 3.2:-86548991 MS.gene014991:CDS
CTTGGCGCCGCCTTATTCTC+CGG 0.485783 3.2:-86549511 MS.gene014991:CDS
TGTGCTATTATGCGTTATGA+AGG 0.486817 3.2:-86549403 MS.gene014991:CDS
CTAGTCTTAATTGTATCAAA+AGG 0.488173 3.2:+86548791 None:intergenic
ATTGAATCAATCTTGCCTCT+TGG 0.494327 3.2:+86548580 None:intergenic
AATTGGTGTCCAAACCAATT+GGG 0.502602 3.2:+86549192 None:intergenic
AGTCAAAGACTTATGGTTCA+AGG 0.505556 3.2:-86549160 MS.gene014991:CDS
TTGAGTGCTGTTGTGGCAAG+TGG 0.508696 3.2:-86548836 MS.gene014991:CDS
AGGAATTTGGTGAATGAAGG+TGG 0.511506 3.2:-86548704 MS.gene014991:CDS
GTCATATAAAGTGCTCTGGC+AGG 0.513136 3.2:+86549331 None:intergenic
ATAAAGGGCAGCTGAAACAC+CGG 0.518749 3.2:+86549492 None:intergenic
AGATGAATCAACATCTTGTT+GGG 0.518873 3.2:+86549597 None:intergenic
AATCCTCTATAAAACCCTCT+TGG 0.529595 3.2:+86549037 None:intergenic
GGTTTGTTTGCTTGTTACAG+AGG 0.533025 3.2:-86548683 MS.gene014991:CDS
TGAGTGCTGTTGTGGCAAGT+GGG 0.534055 3.2:-86548835 MS.gene014991:CDS
AAGGTAGTTGTAATAGTGGA+GGG 0.547096 3.2:-86549141 MS.gene014991:CDS
CAAGGTAGTTGTAATAGTGG+AGG 0.549976 3.2:-86549142 MS.gene014991:CDS
AATTTGGATAATGGATGTGT+TGG 0.552571 3.2:-86548899 MS.gene014991:CDS
CAGAGGATTGGGACCAAGGT+GGG 0.556536 3.2:-86548666 MS.gene014991:CDS
GTTACAGAGGATTGGGACCA+AGG 0.556847 3.2:-86548670 MS.gene014991:CDS
CCCACCACTGCCTTAGAATG+AGG 0.558030 3.2:+86548869 None:intergenic
CTCATAAGTAGTAATCATAG+TGG 0.558867 3.2:+86548622 None:intergenic
ATGTGCCAATCAATTTCAGC+TGG 0.568665 3.2:+86549559 None:intergenic
CGGAGAATAAGGCGGCGCCA+AGG 0.570255 3.2:+86549512 None:intergenic
CCTCATTCTAAGGCAGTGGT+GGG 0.572114 3.2:-86548869 MS.gene014991:CDS
ATACAGAGGAGAATGGAAGA+AGG 0.573232 3.2:-86548754 MS.gene014991:CDS
ACAAGGTTTGAGTGCTGTTG+TGG 0.577827 3.2:-86548843 MS.gene014991:CDS
GAGTGCTGTTGTGGCAAGTG+GGG 0.587452 3.2:-86548834 MS.gene014991:CDS
CTTTGTGCTGATGGACCAAG+AGG 0.612590 3.2:-86549052 MS.gene014991:CDS
GAAGTTACTAAGAGTAACGT+TGG 0.622290 3.2:-86549301 MS.gene014991:CDS
AGTGTGAAGAAGAAACCTGT+TGG 0.650074 3.2:+86549446 None:intergenic
ACAGAGGATTGGGACCAAGG+TGG 0.663047 3.2:-86548667 MS.gene014991:CDS
CAGAGGAGAATGGAAGAAGG+AGG 0.668782 3.2:-86548751 MS.gene014991:CDS
TTTGTGCTGATGGACCAAGA+GGG 0.670437 3.2:-86549051 MS.gene014991:CDS
TGGTGTCCAAACCAATTGGG+CGG 0.673381 3.2:+86549195 None:intergenic
TGAAACGCATGTCTACCAAG+AGG 0.682694 3.2:-86548595 MS.gene014991:CDS
ATAGACATTGAAACCCACCT+TGG 0.687722 3.2:+86548653 None:intergenic
TGAAACACCGGAGAATAAGG+CGG 0.706606 3.2:+86549504 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTAAGTTTTTCTTCCT+TGG - chr3.2:86548670-86548689 MS.gene014991:CDS 25.0%
!! AACTCTGAGAATTATAGAAA+TGG - chr3.2:86549102-86549121 MS.gene014991:CDS 25.0%
!! AGAGGTTTTTATAAAGGTTT+TGG - chr3.2:86548823-86548842 MS.gene014991:CDS 25.0%
!! CTTTTGATACAATTAAGACT+AGG - chr3.2:86549409-86549428 MS.gene014991:CDS 25.0%
!!! CTAGTCTTAATTGTATCAAA+AGG + chr3.2:86549411-86549430 None:intergenic 25.0%
!!! GGTTTTAGAGGTTTTTATAA+AGG - chr3.2:86548817-86548836 MS.gene014991:CDS 25.0%
AAGATGAATCAACATCTTGT+TGG + chr3.2:86548606-86548625 None:intergenic 30.0%
ACTGTTTGCACAAAAGTTAA+AGG + chr3.2:86549474-86549493 None:intergenic 30.0%
AGATGAATCAACATCTTGTT+GGG + chr3.2:86548605-86548624 None:intergenic 30.0%
AGGGAACAAAATTTGGATAA+TGG - chr3.2:86549291-86549310 MS.gene014991:CDS 30.0%
CAAAACAACCATTGGATAAA+GGG + chr3.2:86548725-86548744 None:intergenic 30.0%
CTCATAAGTAGTAATCATAG+TGG + chr3.2:86549580-86549599 None:intergenic 30.0%
CTTCTTATAGTATGGTTCAT+AGG - chr3.2:86549232-86549251 MS.gene014991:CDS 30.0%
CTTTGACTAACAACATCAAT+TGG + chr3.2:86549027-86549046 None:intergenic 30.0%
GTATGGTTCATAGGTTTATT+TGG - chr3.2:86549241-86549260 MS.gene014991:CDS 30.0%
TCAAAACAACCATTGGATAA+AGG + chr3.2:86548726-86548745 None:intergenic 30.0%
TGTTGTTAGTCAAAGACTTA+TGG - chr3.2:86549032-86549051 MS.gene014991:CDS 30.0%
! TAACTTTTGTGCAAACAGTT+AGG - chr3.2:86549475-86549494 MS.gene014991:CDS 30.0%
!! AATTTGGATAATGGATGTGT+TGG - chr3.2:86549300-86549319 MS.gene014991:CDS 30.0%
!! AGGTTTATTTGGAGTAGTTT+TGG - chr3.2:86549252-86549271 MS.gene014991:CDS 30.0%
!! AGGTTTTGGTACTTCTTTAA+TGG - chr3.2:86548837-86548856 MS.gene014991:CDS 30.0%
!! GGTTTTGGTACTTCTTTAAT+GGG - chr3.2:86548838-86548857 MS.gene014991:CDS 30.0%
!!! ATAATGGATGTGTTGGTTTT+AGG - chr3.2:86549307-86549326 MS.gene014991:CDS 30.0%
!!! GAAATGGTTTTGATGTGTTT+AGG - chr3.2:86549118-86549137 MS.gene014991:CDS 30.0%
AATCCTCTATAAAACCCTCT+TGG + chr3.2:86549165-86549184 None:intergenic 35.0%
ACATACCAGCTGAAATTGAT+TGG - chr3.2:86548635-86548654 MS.gene014991:CDS 35.0%
AGGAAAATTCTTTGTGCTGA+TGG - chr3.2:86549138-86549157 MS.gene014991:CDS 35.0%
AGTCAAAGACTTATGGTTCA+AGG - chr3.2:86549039-86549058 MS.gene014991:CDS 35.0%
GAAGTTACTAAGAGTAACGT+TGG - chr3.2:86548898-86548917 MS.gene014991:CDS 35.0%
GGGTAATAGGGAACAAAATT+TGG - chr3.2:86549284-86549303 MS.gene014991:CDS 35.0%
GTTCAAGGTAGTTGTAATAG+TGG - chr3.2:86549054-86549073 MS.gene014991:CDS 35.0%
TACAATTAAGACTAGGTTGC+AGG - chr3.2:86549416-86549435 MS.gene014991:CDS 35.0%
TGTGCAAACAGTTAGGAATT+TGG - chr3.2:86549482-86549501 MS.gene014991:CDS 35.0%
! AAGGTAGTTGTAATAGTGGA+GGG - chr3.2:86549058-86549077 MS.gene014991:CDS 35.0%
! AATTGGTGTCCAAACCAATT+GGG + chr3.2:86549010-86549029 None:intergenic 35.0%
! CGAGTTTTCAAAACAACCAT+TGG + chr3.2:86548733-86548752 None:intergenic 35.0%
! GTTAGGAATTTGGTGAATGA+AGG - chr3.2:86549492-86549511 MS.gene014991:CDS 35.0%
! TGTGCTATTATGCGTTATGA+AGG - chr3.2:86548796-86548815 MS.gene014991:CDS 35.0%
! TTTGCTTGTTACAGAGGATT+GGG - chr3.2:86549522-86549541 MS.gene014991:CDS 35.0%
!! AGAGGGTTTTATAGAGGATT+TGG - chr3.2:86549165-86549184 MS.gene014991:CDS 35.0%
!! ATGCGTTATGAAGGTTTTAG+AGG - chr3.2:86548805-86548824 MS.gene014991:CDS 35.0%
!! GAGGGTTTTATAGAGGATTT+GGG - chr3.2:86549166-86549185 MS.gene014991:CDS 35.0%
!! GGTACTGCTTTTGTTGAATT+GGG - chr3.2:86548919-86548938 MS.gene014991:CDS 35.0%
!! TGGTACTGCTTTTGTTGAAT+TGG - chr3.2:86548918-86548937 MS.gene014991:CDS 35.0%
!! TTGGTGGACTTCTTATAGTA+TGG - chr3.2:86549224-86549243 MS.gene014991:CDS 35.0%
!!! AGTAGTTTTGGTTCATGCTT+GGG - chr3.2:86549264-86549283 MS.gene014991:CDS 35.0%
AGTGTGAAGAAGAAACCTGT+TGG + chr3.2:86548756-86548775 None:intergenic 40.0%
ATACAGAGGAGAATGGAAGA+AGG - chr3.2:86549445-86549464 MS.gene014991:CDS 40.0%
ATAGACATTGAAACCCACCT+TGG + chr3.2:86549549-86549568 None:intergenic 40.0%
ATGCACCTTCTAATGCTGTT+TGG - chr3.2:86549205-86549224 MS.gene014991:CDS 40.0%
ATGTGCCAATCAATTTCAGC+TGG + chr3.2:86548643-86548662 None:intergenic 40.0%
CAAGGTAGTTGTAATAGTGG+AGG - chr3.2:86549057-86549076 MS.gene014991:CDS 40.0%
TGGTTCATGCTTGGGTAATA+GGG - chr3.2:86549272-86549291 MS.gene014991:CDS 40.0%
TTGGTTCATGCTTGGGTAAT+AGG - chr3.2:86549271-86549290 MS.gene014991:CDS 40.0%
! AGGAATTTGGTGAATGAAGG+TGG - chr3.2:86549495-86549514 MS.gene014991:CDS 40.0%
! CAATTGGTGTCCAAACCAAT+TGG + chr3.2:86549011-86549030 None:intergenic 40.0%
! GGTTTGTTTGCTTGTTACAG+AGG - chr3.2:86549516-86549535 MS.gene014991:CDS 40.0%
! GTTTGCTTGTTACAGAGGAT+TGG - chr3.2:86549521-86549540 MS.gene014991:CDS 40.0%
! TAAGACTAGGTTGCAGGTTT+TGG - chr3.2:86549422-86549441 MS.gene014991:CDS 40.0%
! TGCTGTCATATAAAGTGCTC+TGG + chr3.2:86548875-86548894 None:intergenic 40.0%
!! GTTTTGGATACAGAGGAGAA+TGG - chr3.2:86549438-86549457 MS.gene014991:CDS 40.0%
!!! GAGTAGTTTTGGTTCATGCT+TGG - chr3.2:86549263-86549282 MS.gene014991:CDS 40.0%
!!! TGGTTTTAGGCCTCATTCTA+AGG - chr3.2:86549320-86549339 MS.gene014991:CDS 40.0%
!!! TGTTTTGAAAACTCGCCAAC+AGG - chr3.2:86548738-86548757 MS.gene014991:CDS 40.0%
AGCTGAAACACCGGAGAATA+AGG + chr3.2:86548701-86548720 None:intergenic 45.0%
ATAAAGGGCAGCTGAAACAC+CGG + chr3.2:86548710-86548729 None:intergenic 45.0%
GTCCACCAAACAGCATTAGA+AGG + chr3.2:86549213-86549232 None:intergenic 45.0%
TGAAACACCGGAGAATAAGG+CGG + chr3.2:86548698-86548717 None:intergenic 45.0%
TGAAACGCATGTCTACCAAG+AGG - chr3.2:86549604-86549623 MS.gene014991:CDS 45.0%
TTCAGCTGCCCTTTATCCAA+TGG - chr3.2:86548714-86548733 MS.gene014991:CDS 45.0%
! ACAAGGTTTGAGTGCTGTTG+TGG - chr3.2:86549356-86549375 MS.gene014991:CDS 45.0%
! CACCTTCTAATGCTGTTTGG+TGG - chr3.2:86549208-86549227 MS.gene014991:CDS 45.0%
! GTCATATAAAGTGCTCTGGC+AGG + chr3.2:86548871-86548890 None:intergenic 45.0%
! TTTGTGCTGATGGACCAAGA+GGG - chr3.2:86549148-86549167 MS.gene014991:CDS 45.0%
!! GGACCAAGAGGGTTTTATAG+AGG - chr3.2:86549159-86549178 MS.gene014991:CDS 45.0%
!!! GTTGCAGGTTTTGGATACAG+AGG - chr3.2:86549431-86549450 MS.gene014991:CDS 45.0%
CAGAGGAGAATGGAAGAAGG+AGG - chr3.2:86549448-86549467 MS.gene014991:CDS 50.0%
CTATGTCCGCCCAATTGGTT+TGG - chr3.2:86548998-86549017 MS.gene014991:CDS 50.0%
GTTACAGAGGATTGGGACCA+AGG - chr3.2:86549529-86549548 MS.gene014991:CDS 50.0%
TGGTGTCCAAACCAATTGGG+CGG + chr3.2:86549007-86549026 None:intergenic 50.0%
TTCTGCTATGTCCGCCCAAT+TGG - chr3.2:86548993-86549012 MS.gene014991:CDS 50.0%
! CTTTGTGCTGATGGACCAAG+AGG - chr3.2:86549147-86549166 MS.gene014991:CDS 50.0%
! TGAGTGCTGTTGTGGCAAGT+GGG - chr3.2:86549364-86549383 MS.gene014991:CDS 50.0%
! TTGAGTGCTGTTGTGGCAAG+TGG - chr3.2:86549363-86549382 MS.gene014991:CDS 50.0%
!! CCTCATTCTAAGGCAGTGGT+GGG - chr3.2:86549330-86549349 MS.gene014991:CDS 50.0%
!! TAGGCCTCATTCTAAGGCAG+TGG - chr3.2:86549326-86549345 MS.gene014991:CDS 50.0%
ACAGAGGATTGGGACCAAGG+TGG - chr3.2:86549532-86549551 MS.gene014991:CDS 55.0%
CAGAGGATTGGGACCAAGGT+GGG - chr3.2:86549533-86549552 MS.gene014991:CDS 55.0%
CCCACCACTGCCTTAGAATG+AGG + chr3.2:86549333-86549352 None:intergenic 55.0%
! GAGTGCTGTTGTGGCAAGTG+GGG - chr3.2:86549365-86549384 MS.gene014991:CDS 55.0%
!! AAGGCAGTGGTGGGTGTACA+AGG - chr3.2:86549339-86549358 MS.gene014991:CDS 55.0%
!! GCCTCATTCTAAGGCAGTGG+TGG - chr3.2:86549329-86549348 MS.gene014991:CDS 55.0%
! CTTGGCGCCGCCTTATTCTC+CGG - chr3.2:86548688-86548707 MS.gene014991:CDS 60.0%
! GCTGTTGCTAGTGCTGCTGC+TGG - chr3.2:86548964-86548983 MS.gene014991:CDS 60.0%
CGGAGAATAAGGCGGCGCCA+AGG + chr3.2:86548690-86548709 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 86548586 86549635 86548586 ID=MS.gene014991
chr3.2 mRNA 86548586 86549635 86548586 ID=MS.gene014991.t1;Parent=MS.gene014991
chr3.2 exon 86548586 86549635 86548586 ID=MS.gene014991.t1.exon1;Parent=MS.gene014991.t1
chr3.2 CDS 86548586 86549635 86548586 ID=cds.MS.gene014991.t1;Parent=MS.gene014991.t1
Gene Sequence

>MS.gene014991

ATGAGTTTAAGAACAACCCAACAAGATGTTGATTCATCTTCAGAAATTCACATACCAGCTGAAATTGATTGGCACATGCTTGATAAATCTAAGTTTTTCTTCCTTGGCGCCGCCTTATTCTCCGGTGTTTCAGCTGCCCTTTATCCAATGGTTGTTTTGAAAACTCGCCAACAGGTTTCTTCTTCACACTATTCTTGTATCAACATGTCATGTGCTATTATGCGTTATGAAGGTTTTAGAGGTTTTTATAAAGGTTTTGGTACTTCTTTAATGGGTACTATTCCTGCCAGAGCACTTTATATGACAGCACTTGAAGTTACTAAGAGTAACGTTGGTACTGCTTTTGTTGAATTGGGTTTTTCTGATAATACTGCTACTGCTGTTGCTAGTGCTGCTGCTGGTGTTGCTTCTGCTATGTCCGCCCAATTGGTTTGGACACCAATTGATGTTGTTAGTCAAAGACTTATGGTTCAAGGTAGTTGTAATAGTGGAGGGAAGAGTATTTTGTCTAATCTTAACTCTGAGAATTATAGAAATGGTTTTGATGTGTTTAGGAAAATTCTTTGTGCTGATGGACCAAGAGGGTTTTATAGAGGATTTGGGATTTCAATTTTGACTTATGCACCTTCTAATGCTGTTTGGTGGACTTCTTATAGTATGGTTCATAGGTTTATTTGGAGTAGTTTTGGTTCATGCTTGGGTAATAGGGAACAAAATTTGGATAATGGATGTGTTGGTTTTAGGCCTCATTCTAAGGCAGTGGTGGGTGTACAAGGTTTGAGTGCTGTTGTGGCAAGTGGGGTTTCTGCAATTGTGACAATGCCTTTTGATACAATTAAGACTAGGTTGCAGGTTTTGGATACAGAGGAGAATGGAAGAAGGAGGCCTTTAACTTTTGTGCAAACAGTTAGGAATTTGGTGAATGAAGGTGGTTTGTTTGCTTGTTACAGAGGATTGGGACCAAGGTGGGTTTCAATGTCTATGTCTGCTACCACTATGATTACTACTTATGAGTTTTTGAAACGCATGTCTACCAAGAGGCAAGATTGA
Protein sequence

>MS.gene014991.t1

MSLRTTQQDVDSSSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSSHYSCINMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMTALEVTKSNVGTAFVELGFSDNTATAVASAAAGVASAMSAQLVWTPIDVVSQRLMVQGSCNSGGKSILSNLNSENYRNGFDVFRKILCADGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWSSFGSCLGNREQNLDNGCVGFRPHSKAVVGVQGLSAVVASGVSAIVTMPFDTIKTRLQVLDTEENGRRRPLTFVQTVRNLVNEGGLFACYRGLGPRWVSMSMSATTMITTYEFLKRMSTKRQD