Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42695.t1 | XP_003603186.1 | 99.4 | 349 | 1 | 1 | 1 | 349 | 1 | 348 | 7.60E-193 | 682.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42695.t1 | Q8BGF9 | 32.2 | 332 | 182 | 10 | 22 | 346 | 10 | 305 | 4.0e-33 | 143.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42695.t1 | G7J8D0 | 99.4 | 349 | 1 | 1 | 1 | 349 | 1 | 348 | 5.5e-193 | 682.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009458 | MS.gene42695 | PPI |
| MS.gene42695 | MS.gene48524 | PPI |
| MS.gene42695 | MS.gene53821 | PPI |
| MS.gene42695 | MS.gene56256 | PPI |
| MS.gene83188 | MS.gene42695 | PPI |
| MS.gene42695 | MS.gene018284 | PPI |
| MS.gene42695 | MS.gene63514 | PPI |
| MS.gene42695 | MS.gene021976 | PPI |
| MS.gene51627 | MS.gene42695 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42695.t1 | MTR_3g104810 | 99.427 | 349 | 1 | 1 | 1 | 349 | 1 | 348 | 0.0 | 715 |
| MS.gene42695.t1 | MTR_8g019480 | 66.372 | 339 | 104 | 3 | 16 | 349 | 16 | 349 | 1.62e-158 | 448 |
| MS.gene42695.t1 | MTR_6g015860 | 40.663 | 332 | 169 | 4 | 21 | 349 | 5 | 311 | 3.39e-85 | 260 |
| MS.gene42695.t1 | MTR_7g015870 | 40.303 | 330 | 165 | 5 | 21 | 345 | 9 | 311 | 4.70e-81 | 250 |
| MS.gene42695.t1 | MTR_7g015870 | 40.673 | 327 | 162 | 5 | 27 | 348 | 19 | 318 | 9.34e-81 | 249 |
| MS.gene42695.t1 | MTR_2g032610 | 37.576 | 330 | 175 | 8 | 21 | 344 | 17 | 321 | 2.04e-69 | 220 |
| MS.gene42695.t1 | MTR_1g097890 | 24.642 | 349 | 197 | 10 | 6 | 348 | 20 | 308 | 1.80e-22 | 96.3 |
| MS.gene42695.t1 | MTR_8g092080 | 24.510 | 306 | 173 | 8 | 43 | 348 | 62 | 309 | 5.35e-18 | 84.0 |
| MS.gene42695.t1 | MTR_8g092080 | 25.806 | 217 | 134 | 6 | 30 | 239 | 128 | 324 | 1.06e-11 | 65.5 |
| MS.gene42695.t1 | MTR_7g068340 | 27.778 | 216 | 125 | 6 | 35 | 242 | 187 | 379 | 7.29e-17 | 81.3 |
| MS.gene42695.t1 | MTR_7g068340 | 21.951 | 287 | 173 | 5 | 57 | 343 | 120 | 355 | 1.30e-12 | 68.6 |
| MS.gene42695.t1 | MTR_5g073040 | 25.000 | 304 | 170 | 7 | 46 | 338 | 52 | 308 | 1.56e-16 | 79.7 |
| MS.gene42695.t1 | MTR_1g012030 | 23.077 | 299 | 188 | 5 | 46 | 343 | 152 | 409 | 1.65e-16 | 80.5 |
| MS.gene42695.t1 | MTR_8g098240 | 24.765 | 319 | 192 | 8 | 25 | 341 | 312 | 584 | 8.28e-16 | 79.0 |
| MS.gene42695.t1 | MTR_3g098460 | 24.629 | 337 | 209 | 10 | 10 | 342 | 183 | 478 | 1.21e-15 | 78.2 |
| MS.gene42695.t1 | MTR_3g098460 | 29.767 | 215 | 113 | 8 | 132 | 346 | 207 | 383 | 2.30e-11 | 65.1 |
| MS.gene42695.t1 | MTR_3g107510 | 22.297 | 296 | 188 | 5 | 49 | 343 | 138 | 392 | 2.17e-15 | 77.0 |
| MS.gene42695.t1 | MTR_4g114320 | 23.510 | 302 | 187 | 8 | 49 | 348 | 139 | 398 | 6.85e-15 | 75.5 |
| MS.gene42695.t1 | MTR_5g009500 | 23.492 | 315 | 201 | 6 | 42 | 341 | 46 | 335 | 2.61e-14 | 73.6 |
| MS.gene42695.t1 | MTR_4g012850 | 23.377 | 308 | 199 | 7 | 37 | 342 | 18 | 290 | 3.21e-14 | 72.8 |
| MS.gene42695.t1 | MTR_8g027975 | 24.606 | 317 | 197 | 8 | 42 | 341 | 59 | 350 | 3.49e-14 | 73.2 |
| MS.gene42695.t1 | MTR_4g016730 | 28.061 | 196 | 106 | 5 | 35 | 228 | 196 | 358 | 1.29e-13 | 71.6 |
| MS.gene42695.t1 | MTR_6g034515 | 23.077 | 286 | 167 | 9 | 45 | 322 | 79 | 319 | 2.12e-13 | 70.9 |
| MS.gene42695.t1 | MTR_5g055410 | 28.000 | 200 | 118 | 6 | 49 | 238 | 135 | 318 | 2.46e-13 | 70.5 |
| MS.gene42695.t1 | MTR_7g084400 | 28.293 | 205 | 118 | 5 | 28 | 223 | 299 | 483 | 9.52e-13 | 69.3 |
| MS.gene42695.t1 | MTR_2g436930 | 27.807 | 187 | 125 | 4 | 48 | 227 | 53 | 236 | 1.22e-12 | 67.4 |
| MS.gene42695.t1 | MTR_2g436930 | 27.807 | 187 | 125 | 4 | 48 | 227 | 143 | 326 | 1.69e-12 | 67.8 |
| MS.gene42695.t1 | MTR_4g088545 | 23.292 | 322 | 208 | 11 | 37 | 349 | 14 | 305 | 1.77e-12 | 67.8 |
| MS.gene42695.t1 | MTR_7g109135 | 30.570 | 193 | 105 | 7 | 49 | 231 | 40 | 213 | 3.18e-12 | 65.9 |
| MS.gene42695.t1 | MTR_8g096050 | 27.041 | 196 | 122 | 6 | 33 | 223 | 321 | 500 | 3.87e-12 | 67.4 |
| MS.gene42695.t1 | MTR_8g096050 | 28.936 | 235 | 125 | 8 | 114 | 346 | 211 | 405 | 1.12e-11 | 66.2 |
| MS.gene42695.t1 | MTR_7g109135 | 30.570 | 193 | 105 | 7 | 49 | 231 | 61 | 234 | 7.86e-12 | 64.7 |
| MS.gene42695.t1 | MTR_4g057850 | 24.585 | 301 | 175 | 10 | 44 | 333 | 33 | 292 | 9.55e-12 | 65.5 |
| MS.gene42695.t1 | MTR_7g109135 | 25.215 | 349 | 197 | 14 | 12 | 342 | 2 | 304 | 1.29e-11 | 65.1 |
| MS.gene42695.t1 | MTR_7g109135 | 30.570 | 193 | 105 | 7 | 49 | 231 | 139 | 312 | 1.29e-11 | 65.1 |
| MS.gene42695.t1 | MTR_2g102010 | 24.415 | 299 | 184 | 8 | 48 | 342 | 32 | 292 | 2.26e-11 | 64.3 |
| MS.gene42695.t1 | MTR_8g076760 | 25.949 | 316 | 189 | 14 | 47 | 349 | 28 | 311 | 2.27e-11 | 64.3 |
| MS.gene42695.t1 | MTR_6g034740 | 67.347 | 49 | 12 | 1 | 185 | 233 | 106 | 150 | 2.82e-11 | 61.6 |
| MS.gene42695.t1 | MTR_3g104600 | 23.105 | 277 | 177 | 6 | 73 | 341 | 78 | 326 | 7.79e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42695.t1 | AT5G26200 | 67.463 | 335 | 96 | 3 | 15 | 349 | 21 | 342 | 1.45e-161 | 455 |
| MS.gene42695.t1 | AT1G72820 | 63.953 | 344 | 114 | 3 | 9 | 349 | 7 | 343 | 5.28e-155 | 439 |
| MS.gene42695.t1 | AT1G72820 | 63.953 | 344 | 114 | 3 | 9 | 349 | 7 | 343 | 5.28e-155 | 439 |
| MS.gene42695.t1 | AT5G15640 | 42.025 | 326 | 163 | 6 | 21 | 343 | 16 | 318 | 1.92e-80 | 248 |
| MS.gene42695.t1 | AT5G15640 | 41.846 | 325 | 162 | 7 | 22 | 343 | 11 | 311 | 1.28e-77 | 241 |
| MS.gene42695.t1 | AT1G34065 | 26.059 | 307 | 165 | 10 | 43 | 347 | 85 | 331 | 5.14e-19 | 87.0 |
| MS.gene42695.t1 | AT1G34065 | 26.059 | 307 | 165 | 10 | 43 | 347 | 92 | 338 | 7.46e-19 | 86.7 |
| MS.gene42695.t1 | AT4G11440 | 25.150 | 334 | 207 | 9 | 11 | 341 | 307 | 600 | 1.33e-18 | 87.4 |
| MS.gene42695.t1 | AT4G11440 | 25.150 | 334 | 207 | 9 | 11 | 341 | 307 | 600 | 1.33e-18 | 87.4 |
| MS.gene42695.t1 | AT4G39460 | 23.718 | 312 | 168 | 7 | 43 | 348 | 68 | 315 | 8.58e-18 | 83.6 |
| MS.gene42695.t1 | AT4G39460 | 23.718 | 312 | 168 | 7 | 43 | 348 | 68 | 315 | 8.58e-18 | 83.6 |
| MS.gene42695.t1 | AT4G39460 | 23.718 | 312 | 168 | 7 | 43 | 348 | 68 | 315 | 8.58e-18 | 83.6 |
| MS.gene42695.t1 | AT2G30160 | 26.453 | 344 | 211 | 9 | 2 | 341 | 13 | 318 | 3.06e-17 | 82.0 |
| MS.gene42695.t1 | AT2G30160 | 31.122 | 196 | 114 | 7 | 37 | 224 | 138 | 320 | 1.47e-13 | 71.2 |
| MS.gene42695.t1 | AT1G07030 | 24.419 | 344 | 211 | 7 | 2 | 341 | 15 | 313 | 1.15e-15 | 77.4 |
| MS.gene42695.t1 | AT4G32400 | 22.034 | 295 | 190 | 6 | 49 | 343 | 130 | 384 | 3.03e-15 | 76.6 |
| MS.gene42695.t1 | AT2G37890 | 24.820 | 278 | 175 | 5 | 73 | 349 | 93 | 337 | 1.27e-14 | 74.3 |
| MS.gene42695.t1 | AT2G37890 | 27.461 | 193 | 120 | 7 | 40 | 227 | 157 | 334 | 2.52e-12 | 67.4 |
| MS.gene42695.t1 | AT3G51870 | 21.254 | 287 | 175 | 5 | 57 | 343 | 124 | 359 | 4.29e-14 | 73.2 |
| MS.gene42695.t1 | AT3G51870 | 26.531 | 196 | 119 | 3 | 35 | 228 | 191 | 363 | 1.24e-13 | 71.6 |
| MS.gene42695.t1 | AT5G61810 | 22.823 | 333 | 212 | 9 | 10 | 342 | 43 | 330 | 2.74e-13 | 70.5 |
| MS.gene42695.t1 | AT4G26180 | 23.607 | 305 | 192 | 7 | 46 | 341 | 34 | 306 | 2.92e-13 | 70.1 |
| MS.gene42695.t1 | AT5G61810 | 22.823 | 333 | 212 | 9 | 10 | 342 | 186 | 473 | 1.26e-12 | 68.9 |
| MS.gene42695.t1 | AT5G66380 | 24.841 | 314 | 197 | 10 | 45 | 347 | 22 | 307 | 1.65e-12 | 67.8 |
| MS.gene42695.t1 | AT3G20240 | 27.473 | 182 | 112 | 4 | 41 | 219 | 169 | 333 | 3.43e-12 | 67.0 |
| MS.gene42695.t1 | AT3G20240 | 23.602 | 322 | 183 | 11 | 18 | 320 | 38 | 315 | 4.36e-12 | 67.0 |
| MS.gene42695.t1 | AT1G14560 | 22.727 | 308 | 196 | 9 | 46 | 341 | 40 | 317 | 3.58e-12 | 67.0 |
| MS.gene42695.t1 | AT2G33820 | 22.840 | 324 | 207 | 11 | 37 | 349 | 20 | 311 | 6.64e-12 | 65.9 |
| MS.gene42695.t1 | AT4G26180 | 24.028 | 283 | 174 | 7 | 46 | 319 | 34 | 284 | 1.61e-11 | 64.7 |
| MS.gene42695.t1 | AT5G42130 | 22.807 | 285 | 170 | 7 | 47 | 324 | 132 | 373 | 4.32e-11 | 64.3 |
| MS.gene42695.t1 | AT1G25380 | 23.432 | 303 | 188 | 9 | 49 | 342 | 37 | 304 | 5.54e-11 | 63.5 |
| MS.gene42695.t1 | AT1G25380 | 23.432 | 303 | 188 | 9 | 49 | 342 | 37 | 304 | 5.54e-11 | 63.5 |
Find 72 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTTCATGTTTGGGTAAT+AGG | 0.214325 | 3.3:-86237833 | MS.gene42695:CDS |
| TAAGACTAGGTTGCAGGTTT+TGG | 0.217713 | 3.3:-86237682 | MS.gene42695:CDS |
| GGGTAATAGGGAACAAAATT+TGG | 0.223194 | 3.3:-86237820 | MS.gene42695:CDS |
| GTATGGTTCATAGGTTTATT+TGG | 0.230404 | 3.3:-86237863 | MS.gene42695:CDS |
| ACTGTTTGCACAAAAGTTAA+AGG | 0.263128 | 3.3:+86237633 | None:intergenic |
| TCAAAACAACCATTGGATAA+AGG | 0.275303 | 3.3:+86238381 | None:intergenic |
| TGTGCAAACAGTTAGGAATT+TGG | 0.278611 | 3.3:-86237622 | MS.gene42695:CDS |
| CAAAACAACCATTGGATAAA+GGG | 0.284862 | 3.3:+86238382 | None:intergenic |
| AGGTTTATTTGGAGTAGTTT+TGG | 0.311496 | 3.3:-86237852 | MS.gene42695:CDS |
| TTGGTGGACTTCTTATAGTA+TGG | 0.314590 | 3.3:-86237880 | MS.gene42695:CDS |
| TGCTGAAACACCGGAGAATA+AGG | 0.315853 | 3.3:+86238406 | None:intergenic |
| CTTCTTATAGTATGGTTCAT+AGG | 0.318903 | 3.3:-86237872 | MS.gene42695:CDS |
| TACAATTAAGACTAGGTTGC+AGG | 0.330047 | 3.3:-86237688 | MS.gene42695:CDS |
| AGGGAACAAAATTTGGATAA+TGG | 0.330715 | 3.3:-86237813 | MS.gene42695:CDS |
| TGTTGTTAGTCAAAGACTTA+TGG | 0.351347 | 3.3:-86238072 | MS.gene42695:CDS |
| CTATGTCCGCCCAATTGGTT+TGG | 0.361945 | 3.3:-86238106 | MS.gene42695:CDS |
| TTCTGCTATGTCCGCCCAAT+TGG | 0.372927 | 3.3:-86238111 | MS.gene42695:CDS |
| TGGTTCATGTTTGGGTAATA+GGG | 0.373783 | 3.3:-86237832 | MS.gene42695:CDS |
| TTTGCTTGTTACAGAGGATT+GGG | 0.374040 | 3.3:-86237582 | MS.gene42695:CDS |
| AGGAAAATTCTTTGTGCTGA+TGG | 0.385544 | 3.3:-86237966 | MS.gene42695:CDS |
| CAATTGGTGTCCAAACCAAT+TGG | 0.388456 | 3.3:+86238096 | None:intergenic |
| GTTTGCTTGTTACAGAGGAT+TGG | 0.397342 | 3.3:-86237583 | MS.gene42695:CDS |
| ATGCACCTTCTAATGCTGTT+TGG | 0.400660 | 3.3:-86237899 | MS.gene42695:CDS |
| AACTCTGAGAATTATAGAAA+TGG | 0.418052 | 3.3:-86238002 | MS.gene42695:CDS |
| AAGATGAATCAACATCTTGT+TGG | 0.430897 | 3.3:+86238501 | None:intergenic |
| CTTTGACTAACAACATCAAT+TGG | 0.440871 | 3.3:+86238080 | None:intergenic |
| ACATACCAGCTGAAATTGAT+TGG | 0.441612 | 3.3:-86238469 | MS.gene42695:CDS |
| GCTGTTGCTAGTGCTGCTGC+TGG | 0.443255 | 3.3:-86238140 | MS.gene42695:CDS |
| GTTAGGAATTTGGTGAATGA+AGG | 0.452742 | 3.3:-86237612 | MS.gene42695:CDS |
| GCCTCATTCTAAGGCAGTGG+TGG | 0.452956 | 3.3:-86237775 | MS.gene42695:CDS |
| GTCCACCAAACAGCATTAGA+AGG | 0.458897 | 3.3:+86237894 | None:intergenic |
| GTTCAAGGTAGTTGTAATAG+TGG | 0.461965 | 3.3:-86238050 | MS.gene42695:CDS |
| AAGGCAGTGGTGGGTGTACA+AGG | 0.474379 | 3.3:-86237765 | MS.gene42695:CDS |
| TAGGCCTCATTCTAAGGCAG+TGG | 0.479281 | 3.3:-86237778 | MS.gene42695:CDS |
| CACCTTCTAATGCTGTTTGG+TGG | 0.483134 | 3.3:-86237896 | MS.gene42695:CDS |
| CTTGGCGCCGCCTTATTCTC+CGG | 0.485783 | 3.3:-86238416 | MS.gene42695:CDS |
| TTCAGCAGCCCTTTATCCAA+TGG | 0.485865 | 3.3:-86238390 | MS.gene42695:CDS |
| TGTGCTATTATGCGTTATGA+AGG | 0.486817 | 3.3:-86238308 | MS.gene42695:CDS |
| CTAGTCTTAATTGTATCAAA+AGG | 0.488173 | 3.3:+86237696 | None:intergenic |
| ATAAAGGGCTGCTGAAACAC+CGG | 0.489735 | 3.3:+86238397 | None:intergenic |
| ATTGAATCAATCTTGCCTCT+TGG | 0.494327 | 3.3:+86237485 | None:intergenic |
| AATTGGTGTCCAAACCAATT+GGG | 0.502602 | 3.3:+86238097 | None:intergenic |
| AGTCAAAGACTTATGGTTCA+AGG | 0.505556 | 3.3:-86238065 | MS.gene42695:CDS |
| TTGAGTGCTGTTGTGGCAAG+TGG | 0.508696 | 3.3:-86237741 | MS.gene42695:CDS |
| AGGAATTTGGTGAATGAAGG+TGG | 0.511506 | 3.3:-86237609 | MS.gene42695:CDS |
| GTCATATAAAGTGCTCTAGC+AGG | 0.516323 | 3.3:+86238236 | None:intergenic |
| AGATGAATCAACATCTTGTT+GGG | 0.518873 | 3.3:+86238502 | None:intergenic |
| AATCCTCTATAAAACCCTCT+TGG | 0.529595 | 3.3:+86237942 | None:intergenic |
| GGTTTGTTTGCTTGTTACAG+AGG | 0.533025 | 3.3:-86237588 | MS.gene42695:CDS |
| TGAGTGCTGTTGTGGCAAGT+GGG | 0.534055 | 3.3:-86237740 | MS.gene42695:CDS |
| AAGGTAGTTGTAATAGTGGA+GGG | 0.547096 | 3.3:-86238046 | MS.gene42695:CDS |
| CAAGGTAGTTGTAATAGTGG+AGG | 0.549976 | 3.3:-86238047 | MS.gene42695:CDS |
| AATTTGGATAATGGATGTGT+TGG | 0.552571 | 3.3:-86237804 | MS.gene42695:CDS |
| CAGAGGATTGGGACCAAGGT+GGG | 0.556536 | 3.3:-86237571 | MS.gene42695:CDS |
| GTTACAGAGGATTGGGACCA+AGG | 0.556847 | 3.3:-86237575 | MS.gene42695:CDS |
| CCCACCACTGCCTTAGAATG+AGG | 0.558030 | 3.3:+86237774 | None:intergenic |
| CTCATAAGTAGTAATCATAG+TGG | 0.558867 | 3.3:+86237527 | None:intergenic |
| ATGTGCCAATCAATTTCAGC+TGG | 0.568665 | 3.3:+86238464 | None:intergenic |
| CGGAGAATAAGGCGGCGCCA+AGG | 0.570255 | 3.3:+86238417 | None:intergenic |
| CCTCATTCTAAGGCAGTGGT+GGG | 0.572114 | 3.3:-86237774 | MS.gene42695:CDS |
| ATACAGAGGAGAATGGAAGA+AGG | 0.573232 | 3.3:-86237659 | MS.gene42695:CDS |
| ACAAGGTTTGAGTGCTGTTG+TGG | 0.577827 | 3.3:-86237748 | MS.gene42695:CDS |
| GAGTGCTGTTGTGGCAAGTG+GGG | 0.587452 | 3.3:-86237739 | MS.gene42695:CDS |
| CTTTGTGCTGATGGACCAAG+AGG | 0.612590 | 3.3:-86237957 | MS.gene42695:CDS |
| GAAGTTACAAAGAGTAACGT+TGG | 0.618384 | 3.3:-86238206 | MS.gene42695:CDS |
| ACAGAGGATTGGGACCAAGG+TGG | 0.663047 | 3.3:-86237572 | MS.gene42695:CDS |
| CAGAGGAGAATGGAAGAAGG+AGG | 0.668782 | 3.3:-86237656 | MS.gene42695:CDS |
| TTTGTGCTGATGGACCAAGA+GGG | 0.670437 | 3.3:-86237956 | MS.gene42695:CDS |
| TGGTGTCCAAACCAATTGGG+CGG | 0.673381 | 3.3:+86238100 | None:intergenic |
| TGAAACGCATGTCTACCAAG+AGG | 0.682694 | 3.3:-86237500 | MS.gene42695:CDS |
| ATAGACATTGAAACCCACCT+TGG | 0.687722 | 3.3:+86237558 | None:intergenic |
| TGAAACACCGGAGAATAAGG+CGG | 0.704049 | 3.3:+86238409 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTAAGTTTTTCTTCCT+TGG | - | chr3.3:86237575-86237594 | MS.gene42695:CDS | 25.0% |
| !! | AACTCTGAGAATTATAGAAA+TGG | - | chr3.3:86238007-86238026 | MS.gene42695:CDS | 25.0% |
| !! | AGAGGTTTTTATAAAGGTTT+TGG | - | chr3.3:86237728-86237747 | MS.gene42695:CDS | 25.0% |
| !! | CTTTTGATACAATTAAGACT+AGG | - | chr3.3:86238314-86238333 | MS.gene42695:CDS | 25.0% |
| !!! | CTAGTCTTAATTGTATCAAA+AGG | + | chr3.3:86238316-86238335 | None:intergenic | 25.0% |
| !!! | GGTTTTAGAGGTTTTTATAA+AGG | - | chr3.3:86237722-86237741 | MS.gene42695:CDS | 25.0% |
| AAGATGAATCAACATCTTGT+TGG | + | chr3.3:86237511-86237530 | None:intergenic | 30.0% | |
| ACTGTTTGCACAAAAGTTAA+AGG | + | chr3.3:86238379-86238398 | None:intergenic | 30.0% | |
| AGATGAATCAACATCTTGTT+GGG | + | chr3.3:86237510-86237529 | None:intergenic | 30.0% | |
| AGGGAACAAAATTTGGATAA+TGG | - | chr3.3:86238196-86238215 | MS.gene42695:CDS | 30.0% | |
| CAAAACAACCATTGGATAAA+GGG | + | chr3.3:86237630-86237649 | None:intergenic | 30.0% | |
| CTCATAAGTAGTAATCATAG+TGG | + | chr3.3:86238485-86238504 | None:intergenic | 30.0% | |
| CTTCTTATAGTATGGTTCAT+AGG | - | chr3.3:86238137-86238156 | MS.gene42695:CDS | 30.0% | |
| CTTTGACTAACAACATCAAT+TGG | + | chr3.3:86237932-86237951 | None:intergenic | 30.0% | |
| GTATGGTTCATAGGTTTATT+TGG | - | chr3.3:86238146-86238165 | MS.gene42695:CDS | 30.0% | |
| TCAAAACAACCATTGGATAA+AGG | + | chr3.3:86237631-86237650 | None:intergenic | 30.0% | |
| TGTTGTTAGTCAAAGACTTA+TGG | - | chr3.3:86237937-86237956 | MS.gene42695:CDS | 30.0% | |
| ! | TAACTTTTGTGCAAACAGTT+AGG | - | chr3.3:86238380-86238399 | MS.gene42695:CDS | 30.0% |
| !! | AATTTGGATAATGGATGTGT+TGG | - | chr3.3:86238205-86238224 | MS.gene42695:CDS | 30.0% |
| !! | AGGTTTATTTGGAGTAGTTT+TGG | - | chr3.3:86238157-86238176 | MS.gene42695:CDS | 30.0% |
| !! | AGGTTTTGGTACTTCTTTAA+TGG | - | chr3.3:86237742-86237761 | MS.gene42695:CDS | 30.0% |
| !! | GGTTTTGGTACTTCTTTAAT+GGG | - | chr3.3:86237743-86237762 | MS.gene42695:CDS | 30.0% |
| !!! | AGTAGTTTTGGTTCATGTTT+GGG | - | chr3.3:86238169-86238188 | MS.gene42695:CDS | 30.0% |
| !!! | ATAATGGATGTGTTGGTTTT+AGG | - | chr3.3:86238212-86238231 | MS.gene42695:CDS | 30.0% |
| !!! | GAAATGGTTTTGATGTGTTT+AGG | - | chr3.3:86238023-86238042 | MS.gene42695:CDS | 30.0% |
| AATCCTCTATAAAACCCTCT+TGG | + | chr3.3:86238070-86238089 | None:intergenic | 35.0% | |
| ACATACCAGCTGAAATTGAT+TGG | - | chr3.3:86237540-86237559 | MS.gene42695:CDS | 35.0% | |
| AGGAAAATTCTTTGTGCTGA+TGG | - | chr3.3:86238043-86238062 | MS.gene42695:CDS | 35.0% | |
| AGTCAAAGACTTATGGTTCA+AGG | - | chr3.3:86237944-86237963 | MS.gene42695:CDS | 35.0% | |
| GAAGTTACAAAGAGTAACGT+TGG | - | chr3.3:86237803-86237822 | MS.gene42695:CDS | 35.0% | |
| GGGTAATAGGGAACAAAATT+TGG | - | chr3.3:86238189-86238208 | MS.gene42695:CDS | 35.0% | |
| GTTCAAGGTAGTTGTAATAG+TGG | - | chr3.3:86237959-86237978 | MS.gene42695:CDS | 35.0% | |
| TACAATTAAGACTAGGTTGC+AGG | - | chr3.3:86238321-86238340 | MS.gene42695:CDS | 35.0% | |
| TGGTTCATGTTTGGGTAATA+GGG | - | chr3.3:86238177-86238196 | MS.gene42695:CDS | 35.0% | |
| TGTGCAAACAGTTAGGAATT+TGG | - | chr3.3:86238387-86238406 | MS.gene42695:CDS | 35.0% | |
| TTGGTTCATGTTTGGGTAAT+AGG | - | chr3.3:86238176-86238195 | MS.gene42695:CDS | 35.0% | |
| ! | AAGGTAGTTGTAATAGTGGA+GGG | - | chr3.3:86237963-86237982 | MS.gene42695:CDS | 35.0% |
| ! | AATTGGTGTCCAAACCAATT+GGG | + | chr3.3:86237915-86237934 | None:intergenic | 35.0% |
| ! | CGAGTTTTCAAAACAACCAT+TGG | + | chr3.3:86237638-86237657 | None:intergenic | 35.0% |
| ! | GTTAGGAATTTGGTGAATGA+AGG | - | chr3.3:86238397-86238416 | MS.gene42695:CDS | 35.0% |
| ! | TGTGCTATTATGCGTTATGA+AGG | - | chr3.3:86237701-86237720 | MS.gene42695:CDS | 35.0% |
| ! | TTTGCTTGTTACAGAGGATT+GGG | - | chr3.3:86238427-86238446 | MS.gene42695:CDS | 35.0% |
| !! | AGAGGGTTTTATAGAGGATT+TGG | - | chr3.3:86238070-86238089 | MS.gene42695:CDS | 35.0% |
| !! | ATGCGTTATGAAGGTTTTAG+AGG | - | chr3.3:86237710-86237729 | MS.gene42695:CDS | 35.0% |
| !! | GAGGGTTTTATAGAGGATTT+GGG | - | chr3.3:86238071-86238090 | MS.gene42695:CDS | 35.0% |
| !! | GGTACTGCTTTTGTTGAATT+GGG | - | chr3.3:86237824-86237843 | MS.gene42695:CDS | 35.0% |
| !! | TGGTACTGCTTTTGTTGAAT+TGG | - | chr3.3:86237823-86237842 | MS.gene42695:CDS | 35.0% |
| !! | TTGGTGGACTTCTTATAGTA+TGG | - | chr3.3:86238129-86238148 | MS.gene42695:CDS | 35.0% |
| !!! | GAGTAGTTTTGGTTCATGTT+TGG | - | chr3.3:86238168-86238187 | MS.gene42695:CDS | 35.0% |
| !!! | TGTTTTGAAAACTCGTCAAC+AGG | - | chr3.3:86237643-86237662 | MS.gene42695:CDS | 35.0% |
| ATACAGAGGAGAATGGAAGA+AGG | - | chr3.3:86238350-86238369 | MS.gene42695:CDS | 40.0% | |
| ATAGACATTGAAACCCACCT+TGG | + | chr3.3:86238454-86238473 | None:intergenic | 40.0% | |
| ATGCACCTTCTAATGCTGTT+TGG | - | chr3.3:86238110-86238129 | MS.gene42695:CDS | 40.0% | |
| ATGTGCCAATCAATTTCAGC+TGG | + | chr3.3:86237548-86237567 | None:intergenic | 40.0% | |
| CAAGGTAGTTGTAATAGTGG+AGG | - | chr3.3:86237962-86237981 | MS.gene42695:CDS | 40.0% | |
| ! | AGGAATTTGGTGAATGAAGG+TGG | - | chr3.3:86238400-86238419 | MS.gene42695:CDS | 40.0% |
| ! | CAATTGGTGTCCAAACCAAT+TGG | + | chr3.3:86237916-86237935 | None:intergenic | 40.0% |
| ! | GGTTTGTTTGCTTGTTACAG+AGG | - | chr3.3:86238421-86238440 | MS.gene42695:CDS | 40.0% |
| ! | GTCATATAAAGTGCTCTAGC+AGG | + | chr3.3:86237776-86237795 | None:intergenic | 40.0% |
| ! | GTTTGCTTGTTACAGAGGAT+TGG | - | chr3.3:86238426-86238445 | MS.gene42695:CDS | 40.0% |
| ! | TAAGACTAGGTTGCAGGTTT+TGG | - | chr3.3:86238327-86238346 | MS.gene42695:CDS | 40.0% |
| !! | GTTTTGGATACAGAGGAGAA+TGG | - | chr3.3:86238343-86238362 | MS.gene42695:CDS | 40.0% |
| !!! | TGGTTTTAGGCCTCATTCTA+AGG | - | chr3.3:86238225-86238244 | MS.gene42695:CDS | 40.0% |
| ATAAAGGGCTGCTGAAACAC+CGG | + | chr3.3:86237615-86237634 | None:intergenic | 45.0% | |
| GTCCACCAAACAGCATTAGA+AGG | + | chr3.3:86238118-86238137 | None:intergenic | 45.0% | |
| TGAAACACCGGAGAATAAGG+CGG | + | chr3.3:86237603-86237622 | None:intergenic | 45.0% | |
| TGAAACGCATGTCTACCAAG+AGG | - | chr3.3:86238509-86238528 | MS.gene42695:CDS | 45.0% | |
| TGCTGAAACACCGGAGAATA+AGG | + | chr3.3:86237606-86237625 | None:intergenic | 45.0% | |
| TTCAGCAGCCCTTTATCCAA+TGG | - | chr3.3:86237619-86237638 | MS.gene42695:CDS | 45.0% | |
| ! | ACAAGGTTTGAGTGCTGTTG+TGG | - | chr3.3:86238261-86238280 | MS.gene42695:CDS | 45.0% |
| ! | CACCTTCTAATGCTGTTTGG+TGG | - | chr3.3:86238113-86238132 | MS.gene42695:CDS | 45.0% |
| ! | TTTGTGCTGATGGACCAAGA+GGG | - | chr3.3:86238053-86238072 | MS.gene42695:CDS | 45.0% |
| !! | GGACCAAGAGGGTTTTATAG+AGG | - | chr3.3:86238064-86238083 | MS.gene42695:CDS | 45.0% |
| !!! | GTTGCAGGTTTTGGATACAG+AGG | - | chr3.3:86238336-86238355 | MS.gene42695:CDS | 45.0% |
| CAGAGGAGAATGGAAGAAGG+AGG | - | chr3.3:86238353-86238372 | MS.gene42695:CDS | 50.0% | |
| CTATGTCCGCCCAATTGGTT+TGG | - | chr3.3:86237903-86237922 | MS.gene42695:CDS | 50.0% | |
| GTTACAGAGGATTGGGACCA+AGG | - | chr3.3:86238434-86238453 | MS.gene42695:CDS | 50.0% | |
| TGGTGTCCAAACCAATTGGG+CGG | + | chr3.3:86237912-86237931 | None:intergenic | 50.0% | |
| TTCTGCTATGTCCGCCCAAT+TGG | - | chr3.3:86237898-86237917 | MS.gene42695:CDS | 50.0% | |
| ! | CTTTGTGCTGATGGACCAAG+AGG | - | chr3.3:86238052-86238071 | MS.gene42695:CDS | 50.0% |
| ! | TGAGTGCTGTTGTGGCAAGT+GGG | - | chr3.3:86238269-86238288 | MS.gene42695:CDS | 50.0% |
| ! | TTGAGTGCTGTTGTGGCAAG+TGG | - | chr3.3:86238268-86238287 | MS.gene42695:CDS | 50.0% |
| !! | CCTCATTCTAAGGCAGTGGT+GGG | - | chr3.3:86238235-86238254 | MS.gene42695:CDS | 50.0% |
| !! | TAGGCCTCATTCTAAGGCAG+TGG | - | chr3.3:86238231-86238250 | MS.gene42695:CDS | 50.0% |
| ACAGAGGATTGGGACCAAGG+TGG | - | chr3.3:86238437-86238456 | MS.gene42695:CDS | 55.0% | |
| CAGAGGATTGGGACCAAGGT+GGG | - | chr3.3:86238438-86238457 | MS.gene42695:CDS | 55.0% | |
| CCCACCACTGCCTTAGAATG+AGG | + | chr3.3:86238238-86238257 | None:intergenic | 55.0% | |
| ! | GAGTGCTGTTGTGGCAAGTG+GGG | - | chr3.3:86238270-86238289 | MS.gene42695:CDS | 55.0% |
| !! | AAGGCAGTGGTGGGTGTACA+AGG | - | chr3.3:86238244-86238263 | MS.gene42695:CDS | 55.0% |
| !! | GCCTCATTCTAAGGCAGTGG+TGG | - | chr3.3:86238234-86238253 | MS.gene42695:CDS | 55.0% |
| ! | CTTGGCGCCGCCTTATTCTC+CGG | - | chr3.3:86237593-86237612 | MS.gene42695:CDS | 60.0% |
| ! | GCTGTTGCTAGTGCTGCTGC+TGG | - | chr3.3:86237869-86237888 | MS.gene42695:CDS | 60.0% |
| CGGAGAATAAGGCGGCGCCA+AGG | + | chr3.3:86237595-86237614 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86237491 | 86238540 | 86237491 | ID=MS.gene42695 |
| chr3.3 | mRNA | 86237491 | 86238540 | 86237491 | ID=MS.gene42695.t1;Parent=MS.gene42695 |
| chr3.3 | exon | 86237491 | 86238540 | 86237491 | ID=MS.gene42695.t1.exon1;Parent=MS.gene42695.t1 |
| chr3.3 | CDS | 86237491 | 86238540 | 86237491 | ID=cds.MS.gene42695.t1;Parent=MS.gene42695.t1 |
| Gene Sequence |
| Protein sequence |
