AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018362

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018362.t1 MTR_4g128930 87.766 376 12 2 1 343 1 375 0.0 624
MS.gene018362.t1 MTR_3g105710 47.863 351 90 11 20 342 4 289 4.76e-88 266
MS.gene018362.t1 MTR_1g013450 44.633 354 123 9 20 342 4 315 3.27e-87 265
MS.gene018362.t1 MTR_7g018170 64.835 91 32 0 20 110 24 114 2.60e-39 143
MS.gene018362.t1 MTR_3g034680 79.487 78 16 0 67 144 12 89 4.81e-38 131
MS.gene018362.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 1.19e-20 90.5
MS.gene018362.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 1.27e-20 88.6
MS.gene018362.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 6.91e-19 87.4
MS.gene018362.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 7.93e-19 85.9
MS.gene018362.t1 MTR_7g108150 28.049 164 99 3 22 185 20 164 4.28e-17 81.6
MS.gene018362.t1 MTR_7g108150 35.417 96 49 1 212 307 287 369 7.46e-12 66.2
MS.gene018362.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.03e-16 79.0
MS.gene018362.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.05e-16 79.0
MS.gene018362.t1 MTR_3g117320 32.331 133 73 2 22 137 5 137 2.03e-16 77.8
MS.gene018362.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 2.53e-16 76.6
MS.gene018362.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 2.64e-16 76.6
MS.gene018362.t1 MTR_4g071200 40.860 93 45 1 22 104 5 97 3.91e-16 77.0
MS.gene018362.t1 MTR_3g082630 38.889 90 54 1 21 110 4 92 3.49e-15 76.3
MS.gene018362.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 4.70e-15 74.3
MS.gene018362.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 5.20e-15 73.9
MS.gene018362.t1 MTR_2g073370 38.043 92 48 1 22 104 5 96 2.00e-14 73.2
MS.gene018362.t1 MTR_3g113070 36.170 94 49 1 22 104 5 98 7.92e-14 70.5
MS.gene018362.t1 MTR_8g104190 54.795 73 31 1 237 309 331 401 1.99e-13 71.2
MS.gene018362.t1 MTR_2g088900 39.024 82 50 0 21 102 100 181 5.99e-13 70.1
MS.gene018362.t1 MTR_7g083540 40.541 74 44 0 22 95 5 78 5.79e-12 66.6
MS.gene018362.t1 MTR_5g072780 39.640 111 60 2 201 308 110 216 8.90e-12 64.3
MS.gene018362.t1 MTR_1g110870 48.052 77 29 2 232 308 359 424 1.63e-11 65.5
MS.gene018362.t1 MTR_2g096080 43.548 62 32 1 254 312 140 201 3.71e-11 63.2
MS.gene018362.t1 MTR_1g109350 34.146 82 54 0 20 101 3 84 5.53e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018362.t1 AT5G57660 47.120 382 136 10 1 343 1 355 4.62e-100 299
MS.gene018362.t1 AT5G24930 44.909 383 128 12 20 343 4 362 9.52e-92 278
MS.gene018362.t1 AT2G24790 51.316 304 99 10 20 310 6 273 2.13e-88 268
MS.gene018362.t1 AT3G02380 37.363 364 158 10 20 343 14 347 2.39e-70 223
MS.gene018362.t1 AT5G15840 36.800 375 181 11 13 343 11 373 1.61e-69 222
MS.gene018362.t1 AT5G15850 39.189 370 166 9 13 343 6 355 4.98e-69 220
MS.gene018362.t1 AT2G24790 47.556 225 81 8 20 243 6 194 4.83e-56 182
MS.gene018362.t1 AT5G15840 35.294 221 131 7 13 222 11 230 6.68e-39 139
MS.gene018362.t1 AT1G49130 26.543 324 187 9 19 313 18 319 8.08e-20 89.0
MS.gene018362.t1 AT1G49130 26.019 319 186 8 19 309 25 321 8.90e-20 89.0
MS.gene018362.t1 AT2G33500 44.944 89 49 0 22 110 12 100 1.76e-18 86.3
MS.gene018362.t1 AT2G33500 44.944 89 49 0 22 110 12 100 1.80e-18 86.3
MS.gene018362.t1 AT3G21880 26.462 359 187 14 16 307 4 352 9.44e-18 83.6
MS.gene018362.t1 AT3G21880 26.462 359 187 14 16 307 4 352 9.44e-18 83.6
MS.gene018362.t1 AT3G21880 26.062 353 185 13 22 307 5 348 1.70e-17 82.8
MS.gene018362.t1 AT1G28050 43.820 89 50 0 22 110 9 97 1.90e-17 83.2
MS.gene018362.t1 AT1G75540 36.434 129 68 2 22 136 5 133 8.28e-17 80.5
MS.gene018362.t1 AT2G21320 40.449 89 45 1 21 101 4 92 1.21e-16 77.0
MS.gene018362.t1 AT2G47890 38.462 91 54 1 20 110 11 99 2.91e-16 77.4
MS.gene018362.t1 AT2G47890 38.462 91 54 1 20 110 11 99 3.35e-16 78.6
MS.gene018362.t1 AT2G47890 38.462 91 54 1 20 110 11 99 3.47e-16 79.0
MS.gene018362.t1 AT4G38960 43.210 81 38 1 21 93 4 84 3.74e-16 75.9
MS.gene018362.t1 AT4G38960 43.210 81 38 1 21 93 4 84 3.74e-16 75.9
MS.gene018362.t1 AT1G06040 40.217 92 46 1 22 104 5 96 4.05e-16 77.4
MS.gene018362.t1 AT1G06040 40.217 92 46 1 22 104 5 96 7.52e-16 75.1
MS.gene018362.t1 AT4G15250 33.544 158 90 5 22 175 5 151 7.87e-16 77.8
MS.gene018362.t1 AT5G48250 39.130 92 54 1 21 110 4 95 1.12e-15 77.8
MS.gene018362.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene018362.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene018362.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene018362.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene018362.t1 AT2G31380 36.036 111 57 2 22 123 5 110 4.93e-15 73.9
MS.gene018362.t1 AT1G78600 38.043 92 48 1 22 104 5 96 1.41e-14 73.6
MS.gene018362.t1 AT1G78600 35.238 105 59 1 22 117 5 109 1.59e-14 73.9
MS.gene018362.t1 AT1G73870 52.000 75 31 2 239 311 319 390 1.21e-13 71.6
MS.gene018362.t1 AT1G68190 36.585 82 52 0 20 101 41 122 1.61e-12 68.2
MS.gene018362.t1 AT1G68190 36.585 82 52 0 20 101 12 93 1.74e-12 68.2
MS.gene018362.t1 AT1G68190 36.585 82 52 0 20 101 12 93 1.74e-12 68.2
MS.gene018362.t1 AT4G39070 32.500 120 71 1 22 131 5 124 8.00e-12 64.7
MS.gene018362.t1 AT1G68520 67.391 46 15 0 266 311 357 402 1.53e-11 65.5
MS.gene018362.t1 AT4G10240 28.767 146 82 3 22 149 5 146 2.81e-11 61.6
MS.gene018362.t1 AT1G25440 51.389 72 30 2 242 308 332 403 5.46e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCGGAATCGATGGTTTC+AGG 0.197771 8.2:-5504066 MS.gene018362:CDS
GCGAACCGGCCTTTAATTCT+AGG 0.209256 8.2:+5503886 None:intergenic
TCAGAGATATCATACAATTT+TGG 0.229801 8.2:-5504087 MS.gene018362:CDS
TTGAGTTTGGATCCGAAATT+AGG 0.238048 8.2:+5504507 None:intergenic
ATCTTGAGTTTCATTGAGTT+TGG 0.285458 8.2:+5504494 None:intergenic
GTCCACATCCGAGTCAATTT+CGG 0.307960 8.2:+5503855 None:intergenic
TGCTGCAGTTAATATTGTTC+TGG 0.321062 8.2:+5504403 None:intergenic
AGAGATGTTCTTCTCTGATA+TGG 0.330404 8.2:-5504460 MS.gene018362:CDS
GAAACCCGGCCTAGAATTAA+AGG 0.334745 8.2:-5503895 MS.gene018362:CDS
CTTCCCGCCACGAGCGCGTC+TGG 0.340581 8.2:-5504806 MS.gene018362:CDS
TGCTGCAGCAGCGGCGGTGG+AGG 0.348757 8.2:+5504614 None:intergenic
CTGATTCCGAATCCTAATTT+CGG 0.371287 8.2:-5504519 MS.gene018362:CDS
TTTCGGTTCGTTTAGCGAAC+CGG 0.407227 8.2:+5503872 None:intergenic
GGAGTAGGTTTAGTTTGAAC+AGG 0.409524 8.2:+5504357 None:intergenic
GGCTGCTGCAGCAGCGGCGG+TGG 0.410930 8.2:+5504611 None:intergenic
CGCGGCTGCTGCAGCAGCGG+CGG 0.413463 8.2:+5504608 None:intergenic
GAGTTTGTTAGCAGAGTGAA+TGG 0.415127 8.2:+5504830 None:intergenic
AGGAACAACGCTATCGTTCA+TGG 0.416132 8.2:+5504377 None:intergenic
GTTCCTACTGACGACGGTTA+CGG 0.428387 8.2:-5504570 MS.gene018362:CDS
GATCGGAATCGATGGTTTCA+GGG 0.428883 8.2:-5504065 MS.gene018362:CDS
AGTTCCTTCATCTATGCTAA+TGG 0.433285 8.2:-5503803 MS.gene018362:CDS
TCTGACACCGTGTTTGCATC+TGG 0.435148 8.2:+5504105 None:intergenic
TTGCTCCTTGCACCACCCCT+TGG 0.448969 8.2:+5504028 None:intergenic
GAGTAATCAAAATCAAGAAA+TGG 0.454052 8.2:+5504435 None:intergenic
TTGGATCCGAAATTAGGATT+CGG 0.457793 8.2:+5504513 None:intergenic
GCTTTGCACGTGACGGAAGC+TGG 0.472622 8.2:+5504759 None:intergenic
AAAGTGGGAACGACGCCGTA+TGG 0.475583 8.2:+5503775 None:intergenic
AACCGAAATTGACTCGGATG+TGG 0.481901 8.2:-5503857 MS.gene018362:CDS
AGACGCGGCTGCTGCAGCAG+CGG 0.489035 8.2:+5504605 None:intergenic
CCGGCCTTTAATTCTAGGCC+GGG 0.498099 8.2:+5503891 None:intergenic
ACCGGCCTTTAATTCTAGGC+CGG 0.502804 8.2:+5503890 None:intergenic
GGAACTGCGAGAGGATCAGC+AGG 0.506955 8.2:+5503820 None:intergenic
AGCAACACAATTATGTGGAA+TGG 0.513777 8.2:-5504010 MS.gene018362:CDS
GAGTCAAAGAAAGGCTCGAC+GGG 0.517190 8.2:+5504657 None:intergenic
TTGCAAGAATCACATAGCTT+AGG 0.521043 8.2:+5504918 None:intergenic
CATAAGATGGGTATTGAAAG+AGG 0.525020 8.2:-5504978 None:intergenic
CATCCAGACGCGCTCGTGGC+GGG 0.525795 8.2:+5504803 None:intergenic
ATGCTAATGGACTGTCCATA+CGG 0.541142 8.2:-5503790 MS.gene018362:CDS
GAGCGAGTGGATTGGCGGAG+TGG 0.557021 8.2:+5504697 None:intergenic
TGCGTCAGCTTTGCACGTGA+CGG 0.560515 8.2:+5504752 None:intergenic
TTATGAGGTACAGAGAGAAG+AGG 0.563746 8.2:-5503972 MS.gene018362:CDS
TGACCGTAACCGTCGTCAGT+AGG 0.571111 8.2:+5504567 None:intergenic
TGGATTGGCGGAGTGGATGT+CGG 0.572687 8.2:+5504704 None:intergenic
AGTAACCAAGGGGTGGTGCA+AGG 0.573333 8.2:-5504033 MS.gene018362:CDS
ATCGGAATCGATGGTTTCAG+GGG 0.573412 8.2:-5504064 MS.gene018362:CDS
TTTGTTAGCAGAGTGAATGG+TGG 0.574357 8.2:+5504833 None:intergenic
CAAGAATCACATAGCTTAGG+TGG 0.574456 8.2:+5504921 None:intergenic
GATTCAGCGGAGTCAAAGAA+AGG 0.575805 8.2:+5504648 None:intergenic
GTGACGACGAGCGAGTGGAT+TGG 0.575999 8.2:+5504689 None:intergenic
TTATGATTCATCATCCGCGC+TGG 0.581963 8.2:+5504336 None:intergenic
CAGTCCATTAGCATAGATGA+AGG 0.582055 8.2:+5503799 None:intergenic
TGGAATGGATCGTGAAGCGA+GGG 0.592479 8.2:-5503995 MS.gene018362:CDS
ACGACGAGCGAGTGGATTGG+CGG 0.592706 8.2:+5504692 None:intergenic
CAAGGAGCAACACAATTATG+TGG 0.592806 8.2:-5504015 MS.gene018362:CDS
ATGATGAATCATAACTCAGA+AGG 0.596503 8.2:-5504327 MS.gene018362:intron
GATCAGCAGGGTTATAGAGA+CGG 0.597767 8.2:+5503833 None:intergenic
CGTTCGTGACGACGAGCGAG+TGG 0.599256 8.2:+5504684 None:intergenic
ATCGTGAAGCGAGGGTTATG+AGG 0.603818 8.2:-5503987 MS.gene018362:CDS
ACATCCAGACGCGCTCGTGG+CGG 0.606168 8.2:+5504802 None:intergenic
TTCATCATCCGCGCTGGAGT+AGG 0.609886 8.2:+5504342 None:intergenic
CCCGGCCTAGAATTAAAGGC+CGG 0.612766 8.2:-5503891 MS.gene018362:CDS
GGGGTGTGAATAGTAACCAA+GGG 0.630822 8.2:-5504044 MS.gene018362:CDS
GGATTTGACGACGGATTCAG+CGG 0.633353 8.2:+5504635 None:intergenic
GTGGAATGGATCGTGAAGCG+AGG 0.634097 8.2:-5503996 MS.gene018362:CDS
GGAGTCAAAGAAAGGCTCGA+CGG 0.644574 8.2:+5504656 None:intergenic
CACACATCCAGACGCGCTCG+TGG 0.646583 8.2:+5504799 None:intergenic
GAAAAGCTTATGCAGAAACC+CGG 0.650052 8.2:-5503909 MS.gene018362:CDS
AGTGGTGCCAGATGCAAACA+CGG 0.653433 8.2:-5504112 MS.gene018362:CDS
ATAGATGAAGGAACTGCGAG+AGG 0.656412 8.2:+5503811 None:intergenic
TAAACGAACCGAAATTGACT+CGG 0.658214 8.2:-5503863 MS.gene018362:CDS
TTCGTTGTTCCTACTGACGA+CGG 0.659626 8.2:-5504576 MS.gene018362:CDS
GGCGGTGGAGGATTTGACGA+CGG 0.677124 8.2:+5504626 None:intergenic
ATAGAAATGCAGAATCAGAA+CGG 0.678407 8.2:+5504871 None:intergenic
TGTGAATAGTAACCAAGGGG+TGG 0.689533 8.2:-5504040 MS.gene018362:CDS
TCGGAATCGATGGTTTCAGG+GGG 0.701775 8.2:-5504063 MS.gene018362:CDS
ATGATGCTGAAGCAGCTGCG+TGG 0.709512 8.2:-5504542 MS.gene018362:CDS
AACAACGAAATTGAAAGACG+CGG 0.720436 8.2:+5504590 None:intergenic
GGGTGTGAATAGTAACCAAG+GGG 0.734808 8.2:-5504043 MS.gene018362:CDS
AAGATGGGTATTGAAAGAGG+AGG 0.750089 8.2:-5504975 MS.gene018362:CDS
AAACTAAACCTACTCCAGCG+CGG 0.776053 8.2:-5504350 MS.gene018362:CDS
GAACTGCGAGAGGATCAGCA+GGG 0.795439 8.2:+5503821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTACTTACGCTA+TGG + chr8.2:5504508-5504527 None:intergenic 20.0%
! GAGTAATCAAAATCAAGAAA+TGG + chr8.2:5504311-5504330 None:intergenic 25.0%
!! GATATCATACAATTTTGGAT+CGG - chr8.2:5504661-5504680 MS.gene018362:CDS 25.0%
!! TCAGAGATATCATACAATTT+TGG - chr8.2:5504656-5504675 MS.gene018362:CDS 25.0%
ATAGAAATGCAGAATCAGAA+CGG + chr8.2:5503875-5503894 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG + chr8.2:5504252-5504271 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG - chr8.2:5504416-5504435 MS.gene018362:CDS 30.0%
! GAATAGTCTTCTCGAATTTT+CGG + chr8.2:5504802-5504821 None:intergenic 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG - chr8.2:5504583-5504602 MS.gene018362:CDS 30.0%
AACAACGAAATTGAAAGACG+CGG + chr8.2:5504156-5504175 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG - chr8.2:5504283-5504302 MS.gene018362:intron 35.0%
AGCAACACAATTATGTGGAA+TGG - chr8.2:5504733-5504752 MS.gene018362:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG - chr8.2:5504940-5504959 MS.gene018362:CDS 35.0%
ATTACTTACGCTATGGCTAA+TGG + chr8.2:5504501-5504520 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG - chr8.2:5504224-5504243 MS.gene018362:intron 35.0%
TAAACGAACCGAAATTGACT+CGG - chr8.2:5504880-5504899 MS.gene018362:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG + chr8.2:5504343-5504362 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG + chr8.2:5504239-5504258 None:intergenic 35.0%
TTGCAAGAATCACATAGCTT+AGG + chr8.2:5503828-5503847 None:intergenic 35.0%
TTGGATCCGAAATTAGGATT+CGG + chr8.2:5504233-5504252 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG + chr8.2:5504480-5504499 None:intergenic 35.0%
CAAGAATCACATAGCTTAGG+TGG + chr8.2:5503825-5503844 None:intergenic 40.0%
CAAGGAGCAACACAATTATG+TGG - chr8.2:5504728-5504747 MS.gene018362:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG + chr8.2:5504947-5504966 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG + chr8.2:5504491-5504510 None:intergenic 40.0%
GAAAAGCTTATGCAGAAACC+CGG - chr8.2:5504834-5504853 MS.gene018362:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG - chr8.2:5504771-5504790 MS.gene018362:CDS 40.0%
TTTGTTAGCAGAGTGAATGG+TGG + chr8.2:5503913-5503932 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG - chr8.2:5504670-5504689 MS.gene018362:CDS 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG - chr8.2:5503789-5503808 MS.gene018362:CDS 40.0%
!! ATGCTAATGGACTGTCCATA+CGG - chr8.2:5504953-5504972 MS.gene018362:CDS 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG + chr8.2:5503916-5503935 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG + chr8.2:5504389-5504408 None:intergenic 40.0%
AAACTAAACCTACTCCAGCG+CGG - chr8.2:5504393-5504412 MS.gene018362:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG + chr8.2:5504369-5504388 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG + chr8.2:5504935-5504954 None:intergenic 45.0%
ATCAGAACGGCAAAAAAGCG+CGG + chr8.2:5503862-5503881 None:intergenic 45.0%
ATCGGAATCGATGGTTTCAG+GGG - chr8.2:5504679-5504698 MS.gene018362:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG - chr8.2:5504613-5504632 MS.gene018362:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG - chr8.2:5504848-5504867 MS.gene018362:CDS 45.0%
GATCAGCAGGGTTATAGAGA+CGG + chr8.2:5504913-5504932 None:intergenic 45.0%
GATCGGAATCGATGGTTTCA+GGG - chr8.2:5504678-5504697 MS.gene018362:CDS 45.0%
GATTCAGCGGAGTCAAAGAA+AGG + chr8.2:5504098-5504117 None:intergenic 45.0%
GGGGTGTGAATAGTAACCAA+GGG - chr8.2:5504699-5504718 MS.gene018362:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG - chr8.2:5504700-5504719 MS.gene018362:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG + chr8.2:5504891-5504910 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG - chr8.2:5504608-5504627 MS.gene018362:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG - chr8.2:5504703-5504722 MS.gene018362:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG + chr8.2:5504410-5504429 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG - chr8.2:5504167-5504186 MS.gene018362:intron 45.0%
! TAAAGAGTTTTCGAAGCGGC+TGG - chr8.2:5503793-5503812 MS.gene018362:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG + chr8.2:5504874-5504893 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG - chr8.2:5504886-5504905 MS.gene018362:CDS 45.0%
!! TTAATTAATTAATAATGATT+TGG - chr8.2:5504568-5504587 MS.gene018362:CDS 5.0%
ACCGGCCTTTAATTCTAGGC+CGG + chr8.2:5504856-5504875 None:intergenic 50.0%
ATCGTGAAGCGAGGGTTATG+AGG - chr8.2:5504756-5504775 MS.gene018362:CDS 50.0%
GAGTCAAAGAAAGGCTCGAC+GGG + chr8.2:5504089-5504108 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG + chr8.2:5504860-5504879 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG + chr8.2:5504090-5504109 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG - chr8.2:5504677-5504696 MS.gene018362:CDS 50.0%
GTTCCTACTGACGACGGTTA+CGG - chr8.2:5504173-5504192 MS.gene018362:intron 50.0%
TCGGAATCGATGGTTTCAGG+GGG - chr8.2:5504680-5504699 MS.gene018362:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG + chr8.2:5504641-5504660 None:intergenic 50.0%
TGGAATGGATCGTGAAGCGA+GGG - chr8.2:5504748-5504767 MS.gene018362:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG - chr8.2:5504631-5504650 MS.gene018362:CDS 50.0%
! GGATTTGACGACGGATTCAG+CGG + chr8.2:5504111-5504130 None:intergenic 50.0%
! GGGGGTGTGAATAGTAACCA+AGG - chr8.2:5504698-5504717 MS.gene018362:CDS 50.0%
AAAGTGGGAACGACGCCGTA+TGG + chr8.2:5504971-5504990 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG - chr8.2:5504710-5504729 MS.gene018362:CDS 55.0%
ATGATGCTGAAGCAGCTGCG+TGG - chr8.2:5504201-5504220 MS.gene018362:intron 55.0%
CCCGGCCTAGAATTAAAGGC+CGG - chr8.2:5504852-5504871 MS.gene018362:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG + chr8.2:5504855-5504874 None:intergenic 55.0%
GAACTGCGAGAGGATCAGCA+GGG + chr8.2:5504925-5504944 None:intergenic 55.0%
GTGGAATGGATCGTGAAGCG+AGG - chr8.2:5504747-5504766 MS.gene018362:CDS 55.0%
TGACCGTAACCGTCGTCAGT+AGG + chr8.2:5504179-5504198 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG + chr8.2:5503994-5504013 None:intergenic 55.0%
TTCATCATCCGCGCTGGAGT+AGG + chr8.2:5504404-5504423 None:intergenic 55.0%
! AGAACGGCAAAAAAGCGCGG+CGG + chr8.2:5503859-5503878 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG + chr8.2:5504042-5504061 None:intergenic 55.0%
GGAACTGCGAGAGGATCAGC+AGG + chr8.2:5504926-5504945 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG + chr8.2:5504120-5504139 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG + chr8.2:5504057-5504076 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG + chr8.2:5504718-5504737 None:intergenic 60.0%
! GAACGGCAAAAAAGCGCGGC+GGG + chr8.2:5503858-5503877 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG + chr8.2:5503987-5504006 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG + chr8.2:5504054-5504073 None:intergenic 60.0%
ACATCCAGACGCGCTCGTGG+CGG + chr8.2:5503944-5503963 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG + chr8.2:5503947-5503966 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG + chr8.2:5504062-5504081 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG + chr8.2:5504049-5504068 None:intergenic 65.0%
AGACGCGGCTGCTGCAGCAG+CGG + chr8.2:5504141-5504160 None:intergenic 70.0%
CATCCAGACGCGCTCGTGGC+GGG + chr8.2:5503943-5503962 None:intergenic 70.0%
CTTCCCGCCACGAGCGCGTC+TGG - chr8.2:5503937-5503956 MS.gene018362:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG + chr8.2:5504132-5504151 None:intergenic 75.0%
! CGCGGCTGCTGCAGCAGCGG+CGG + chr8.2:5504138-5504157 None:intergenic 80.0%
! GGCTGCTGCAGCAGCGGCGG+TGG + chr8.2:5504135-5504154 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 5503771 5504994 5503771 ID=MS.gene018362
chr8.2 mRNA 5503771 5504994 5503771 ID=MS.gene018362.t1;Parent=MS.gene018362
chr8.2 exon 5504328 5504994 5504328 ID=MS.gene018362.t1.exon1;Parent=MS.gene018362.t1
chr8.2 CDS 5504328 5504994 5504328 ID=cds.MS.gene018362.t1;Parent=MS.gene018362.t1
chr8.2 exon 5503771 5504135 5503771 ID=MS.gene018362.t1.exon2;Parent=MS.gene018362.t1
chr8.2 CDS 5503771 5504135 5503771 ID=cds.MS.gene018362.t1;Parent=MS.gene018362.t1
Gene Sequence

>MS.gene018362

ATGGGTATTGAAAGAGGAGGACTAAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCATTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCAGCTGCTCTATGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCACTCGCTCGTCGTCACGAACGTGTTCCCGTCGAGCCTTTCTTTGACTCCGCTGAATCCGTCGTCAAATCCTCCACCGCCGCTGCTGCAGCAGCCGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTGATTCCGAATCCTAATTTCGGATCCAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTCTTCTCTGATATGGATCCATTTCTTGATTTTGATTACTCAAACAATTTCCAGAACAATATTAACTGCAGCAACGCCATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCAGCGCGGATGATGAATCATAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTAAGTAATTAATTAATGATTTGATTAATTAAGTAATAAGTGTCATTAGAAGTTAATTAATTAATTAATAATGATTTGGTTTGTTATTAGCAGGTTTCGTCATCTTCACTTGACGTAGGAGTGGTGCCAGATGCAAACACGGTGTCAGAGATATCATACAATTTTGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAACCAAGGGGTGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTATGCTTCTCGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCGCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACTTTTTAG
Protein sequence

>MS.gene018362.t1

MGIERGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNINCSNAMNDSVVPVQTKPTPARMMNHNSEGVVPDANTVSEISYNFGSESMVSGGVNSNQGVVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPSSMLMDCPYGVVPTF