AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018707

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018707.t1 MTR_7g096880 97.948 536 11 0 1 536 1 536 0.0 1086
MS.gene018707.t1 MTR_7g096870 91.011 534 46 1 1 532 1 534 0.0 988
MS.gene018707.t1 MTR_1g069935 86.680 518 67 1 1 516 1 518 0.0 944
MS.gene018707.t1 MTR_1g069930 75.093 538 130 2 1 535 1 537 0.0 852
MS.gene018707.t1 MTR_1g074930 76.075 535 120 3 5 533 4 536 0.0 843
MS.gene018707.t1 MTR_3g082700 75.510 539 126 2 1 533 1 539 0.0 828
MS.gene018707.t1 MTR_1g043220 75.188 532 126 2 5 530 4 535 0.0 821
MS.gene018707.t1 MTR_1g074940 77.626 514 93 4 1 506 1 500 0.0 821
MS.gene018707.t1 MTR_1g043290 75.425 529 124 2 5 527 4 532 0.0 819
MS.gene018707.t1 MTR_1g043200 75.379 528 124 2 5 526 4 531 0.0 815
MS.gene018707.t1 MTR_1g028600 60.971 515 187 3 6 517 3 506 0.0 636
MS.gene018707.t1 MTR_5g068140 58.974 546 194 4 8 532 7 543 0.0 636
MS.gene018707.t1 MTR_4g083960 52.751 527 227 11 6 523 5 518 0.0 524
MS.gene018707.t1 MTR_3g084110 24.215 446 278 15 76 510 76 472 5.51e-17 84.3
MS.gene018707.t1 MTR_7g005910 24.301 465 266 18 87 525 92 496 1.21e-16 83.2
MS.gene018707.t1 MTR_1g116660 22.976 457 283 15 90 530 97 500 7.15e-16 80.9
MS.gene018707.t1 MTR_1g116650 21.739 437 273 14 90 517 140 516 1.17e-14 77.0
MS.gene018707.t1 MTR_7g446340 22.222 459 305 13 75 524 99 514 4.98e-14 75.1
MS.gene018707.t1 MTR_6g007340 22.222 459 305 13 75 524 99 514 4.98e-14 75.1
MS.gene018707.t1 MTR_6g088450 24.670 454 266 15 75 505 102 502 1.92e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018707.t1 AT3G54700 85.687 517 73 1 1 516 1 517 0.0 927
MS.gene018707.t1 AT3G54700 85.687 517 73 1 1 516 1 517 0.0 927
MS.gene018707.t1 AT2G38940 85.078 516 72 1 1 511 1 516 0.0 926
MS.gene018707.t1 AT2G32830 74.627 536 130 1 1 530 1 536 0.0 850
MS.gene018707.t1 AT5G43350 78.295 516 108 1 1 512 1 516 0.0 840
MS.gene018707.t1 AT5G43360 77.115 520 115 1 1 516 1 520 0.0 831
MS.gene018707.t1 AT5G43370 78.101 516 109 1 1 512 1 516 0.0 813
MS.gene018707.t1 AT5G43370 78.101 516 109 1 1 512 1 516 0.0 813
MS.gene018707.t1 AT5G43340 67.954 518 149 2 3 516 4 508 0.0 746
MS.gene018707.t1 AT1G76430 50.287 523 233 10 5 512 3 513 3.90e-177 510
MS.gene018707.t1 AT1G20860 50.566 530 238 11 6 526 3 517 1.94e-173 500
MS.gene018707.t1 AT1G20860 50.566 530 238 11 6 526 55 569 6.63e-173 501
MS.gene018707.t1 AT4G08878 69.748 238 72 0 31 268 13 250 1.69e-118 351
MS.gene018707.t1 AT4G08895 55.944 143 31 1 316 458 23 133 3.48e-47 162
MS.gene018707.t1 AT2G43330 23.077 468 271 19 90 530 93 498 3.16e-12 69.3

Find 149 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAGGGGTTTGGAATTT+TGG 0.077597 7.1:-10933421 MS.gene018707:CDS
CTTGGGCGTGGTTAACATTT+TGG 0.103337 7.1:-10932482 MS.gene018707:CDS
ACCTTCTTCTTTGCAAATTT+CGG 0.147299 7.1:-10932709 MS.gene018707:CDS
CCTTCTTCTTTGCAAATTTC+GGG 0.150570 7.1:-10932708 MS.gene018707:CDS
GGGGCTATGGTTGGTGCATT+TGG 0.177381 7.1:-10932592 MS.gene018707:CDS
ATTGGTTCCGGCCTTTCTTT+TGG 0.221455 7.1:-10933594 MS.gene018707:CDS
AGAGTTGCCATGACAGATTT+TGG 0.232908 7.1:+10933564 None:intergenic
GCAGTGTAACGAGCAGTTTC+TGG 0.260006 7.1:+10933222 None:intergenic
CTCCAACTCTCCATTGGTTC+CGG 0.285347 7.1:+10932381 None:intergenic
GTCTTTGCCATGCAGGGGTT+TGG 0.289260 7.1:-10933429 MS.gene018707:CDS
GGGCTATGGTTGGTGCATTT+GGG 0.293475 7.1:-10932591 MS.gene018707:CDS
AACCTCTTCAAGTGCATTCA+TGG 0.307238 7.1:+10932945 None:intergenic
GCTTTCGTTGGTACACTTAC+AGG 0.308824 7.1:-10933702 MS.gene018707:CDS
TGCATTTGGGTTCTTGTACT+TGG 0.328684 7.1:-10932578 MS.gene018707:CDS
AGCTGGGATGGGCTTCTTTA+CGG 0.342867 7.1:-10933850 MS.gene018707:CDS
TGCTGCAGTCTTTGCCATGC+AGG 0.350042 7.1:-10933436 MS.gene018707:CDS
TGAGGCAAATGGAAAATCTT+TGG 0.360198 7.1:-10932434 MS.gene018707:CDS
CATCCGCATCTGGGAAGCTT+GGG 0.365616 7.1:-10932612 MS.gene018707:CDS
GCTCTATGTAGTACAGTTCC+AGG 0.365684 7.1:-10932892 MS.gene018707:CDS
TGGTGGAGACTACCCGCTTT+CGG 0.368286 7.1:-10933508 MS.gene018707:CDS
TTCCACAAGCAGACTACATT+TGG 0.370224 7.1:-10933308 MS.gene018707:CDS
GAAGAATTCACTGCTTCTCT+TGG 0.373442 7.1:-10932500 MS.gene018707:CDS
ATGTATCAGCTGCTGTCAAC+GGG 0.375859 7.1:-10933728 MS.gene018707:CDS
TTGCACTGAAGATATCCTTC+TGG 0.385824 7.1:+10932992 None:intergenic
TGGCTTGGGTTTGGTATTGG+TGG 0.390538 7.1:-10933525 MS.gene018707:CDS
CATGGAATATCATCCGCATC+TGG 0.393884 7.1:-10932622 MS.gene018707:CDS
ACAACAAAGGTGGTAGCATT+AGG 0.393956 7.1:+10932685 None:intergenic
AAGGTTTAAAATCCAATTGA+TGG 0.395559 7.1:-10932833 MS.gene018707:CDS
AATGGCAAAGGATCAAATTC+AGG 0.397510 7.1:-10933931 MS.gene018707:CDS
AAGGATATCTTCAGTGCAAT+TGG 0.401424 7.1:-10932988 MS.gene018707:CDS
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7.1:+10932821 None:intergenic
CAGGCACCAAGAAAGTAAAA+AGG 0.403508 7.1:+10932455 None:intergenic
GTAATCTGCTCCATTGGTTC+CGG 0.408621 7.1:-10933606 MS.gene018707:CDS
TGGCTGGCTTGGTGATAAGT+TGG 0.412115 7.1:-10933667 MS.gene018707:CDS
GGCTGGCTTGGTGATAAGTT+GGG 0.421208 7.1:-10933666 MS.gene018707:CDS
ATCTGGGAAGCTTGGGGCTA+TGG 0.422747 7.1:-10932605 MS.gene018707:CDS
CATAGTTTCAGCTGCATTCA+AGG 0.430576 7.1:-10933379 MS.gene018707:CDS
TTATGAGTCCAGTGATCATA+TGG 0.434933 7.1:+10932769 None:intergenic
GGCTGCAGCGGATATGTCTA+AGG 0.435369 7.1:-10933175 MS.gene018707:CDS
TTGGATTGTGTCCAAAAGAA+AGG 0.438258 7.1:+10933583 None:intergenic
GCAGGTTACCCTGCAGGTAT+TGG 0.440207 7.1:-10932526 MS.gene018707:CDS
CGGCTGCAATGACTTACTAT+TGG 0.441204 7.1:-10933257 MS.gene018707:CDS
GTAGTACAGTTCCAGGCTAC+TGG 0.442457 7.1:-10932885 MS.gene018707:CDS
ACAATACCACGAAGCCGATT+CGG 0.443506 7.1:+10932740 None:intergenic
TTCACAGCAATCATCATAGC+TGG 0.444289 7.1:-10933867 MS.gene018707:CDS
CGCATATACTACCATGTTGA+TGG 0.445018 7.1:-10933780 MS.gene018707:CDS
CATATCCGCTGCAGCCTGCT+TGG 0.454475 7.1:+10933182 None:intergenic
TACATTGGGTGGCAATGTAC+CGG 0.455366 7.1:+10933746 None:intergenic
TGTGGAACAGTTGAACCAAC+AGG 0.457025 7.1:+10933324 None:intergenic
AAGAATTCACTGCTTCTCTT+GGG 0.457936 7.1:-10932499 MS.gene018707:CDS
GCTGCAGTCTTTGCCATGCA+GGG 0.460059 7.1:-10933435 MS.gene018707:CDS
AAAGAAGAAGCCGGAACCAA+TGG 0.460614 7.1:-10932391 MS.gene018707:CDS
CGACATGGATTACATCTACT+TGG 0.462628 7.1:-10933069 MS.gene018707:CDS
GGGAAGCTTGGGGCTATGGT+TGG 0.471822 7.1:-10932601 MS.gene018707:CDS
TCATCCGCATCTGGGAAGCT+TGG 0.473815 7.1:-10932613 MS.gene018707:CDS
GTCAACGGGGTTGCTTTCGT+TGG 0.476531 7.1:-10933714 MS.gene018707:CDS
GTGGCTCTCATTGACAAGAT+AGG 0.481482 7.1:-10932856 MS.gene018707:CDS
GGCAAAGACTGCAGCAATGA+AGG 0.485618 7.1:+10933443 None:intergenic
GTTGACAGCAGCTGATACAT+TGG 0.487108 7.1:+10933731 None:intergenic
ATATGATCACTGGACTCATA+AGG 0.489144 7.1:-10932767 MS.gene018707:CDS
CTTGTACTTGGCACAGAACA+AGG 0.492231 7.1:-10932566 MS.gene018707:CDS
TACTTGGTACAACAAGTACT+TGG 0.493210 7.1:-10933053 MS.gene018707:CDS
TGGTATGACACTGATGATAA+TGG 0.493897 7.1:-10933628 MS.gene018707:CDS
CAATAGTAAGTCATTGCAGC+CGG 0.496792 7.1:+10933258 None:intergenic
GGATCACCGAATCGGCTTCG+TGG 0.502695 7.1:-10932746 MS.gene018707:CDS
TGAACCACAGCAAGCGGAGA+AGG 0.503812 7.1:-10933130 MS.gene018707:CDS
TGCGGATGATATTCCATGGC+AGG 0.504397 7.1:+10932627 None:intergenic
TTCTTGGTGCCTGAGGCAAA+TGG 0.508113 7.1:-10932445 MS.gene018707:CDS
TTCTTCACACCAATACCTGC+AGG 0.508992 7.1:+10932517 None:intergenic
AAATCTTTGGAGGAGATGTC+AGG 0.510193 7.1:-10932421 MS.gene018707:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.510860 7.1:+10932955 None:intergenic
CACAAGCAGACTACATTTGG+AGG 0.510888 7.1:-10933305 MS.gene018707:CDS
GCGGAGAAGGCAAAATCATA+TGG 0.514417 7.1:-10933117 MS.gene018707:CDS
TTCACTGCTTCTCTTGGGCG+TGG 0.515038 7.1:-10932494 MS.gene018707:CDS
ATATCTTCAGTGCAATTGGT+TGG 0.515374 7.1:-10932984 MS.gene018707:CDS
TTGGGTAGGAAGAAAGTGTA+TGG 0.515516 7.1:-10933648 MS.gene018707:CDS
AACCATGAATGCACTTGAAG+AGG 0.516262 7.1:-10932947 MS.gene018707:CDS
AGATTGCTCCAACTCTCCAT+TGG 0.516518 7.1:+10932375 None:intergenic
TTGCCATTCCATATGATCAC+TGG 0.516816 7.1:-10932777 MS.gene018707:CDS
AAAAGAAAGGCCGGAACCAA+TGG 0.520061 7.1:+10933596 None:intergenic
TCCCTTGTTACCAAGTTGCT+CGG 0.520352 7.1:-10933804 MS.gene018707:CDS
AGGTTTAAAATCCAATTGAT+GGG 0.523949 7.1:-10932832 MS.gene018707:CDS
CAGGTAGAACGGAATCTAGC+AGG 0.525861 7.1:+10932646 None:intergenic
GACAAGAGTAAAGCAGATGC+AGG 0.526182 7.1:-10932544 MS.gene018707:CDS
CTCCAAATGTAGTCTGCTTG+TGG 0.526433 7.1:+10933306 None:intergenic
ATAATGGTAATCTGCTCCAT+TGG 0.531504 7.1:-10933612 MS.gene018707:CDS
GCCACTGTAAACCAGTAGCC+TGG 0.533275 7.1:+10932874 None:intergenic
GCAGATGCAGGTTACCCTGC+AGG 0.533852 7.1:-10932532 MS.gene018707:CDS
GTTGATGGTGCTGCGAAGCC+CGG 0.534866 7.1:-10933765 MS.gene018707:CDS
ATCATATGGCTTGTTGTCAA+AGG 0.535067 7.1:-10933103 MS.gene018707:CDS
TGTGATGGTAGGAGCACTCC+CGG 0.536043 7.1:-10933277 MS.gene018707:CDS
GGACACCAAGCAGGCTGCAG+CGG 0.537285 7.1:-10933187 MS.gene018707:CDS
TTGACAGCAGCTGATACATT+GGG 0.537719 7.1:+10933732 None:intergenic
GGATATGTCTAAGGTTCTGC+AGG 0.537946 7.1:-10933166 MS.gene018707:CDS
CTGCAGTCTTTGCCATGCAG+GGG 0.540874 7.1:-10933434 MS.gene018707:CDS
CTTTCGTTGGTACACTTACA+GGG 0.541506 7.1:-10933701 MS.gene018707:CDS
ACATTATAGTAGCCGAAAGC+GGG 0.542524 7.1:+10933496 None:intergenic
ACTCATAAGGATCACCGAAT+CGG 0.544423 7.1:-10932754 MS.gene018707:CDS
AGATTCCGTTCTACCTGCCA+TGG 0.544647 7.1:-10932640 MS.gene018707:CDS
CTGCAATGACTTACTATTGG+CGG 0.544763 7.1:-10933254 MS.gene018707:CDS
ACATTGGGTGGCAATGTACC+GGG 0.549146 7.1:+10933747 None:intergenic
AGCCGGAACCAATGGAGAGT+TGG 0.550591 7.1:-10932383 MS.gene018707:CDS
GCATTCATGGTTTGTGCAGG+TGG 0.550880 7.1:+10932958 None:intergenic
AGTTGCTAAGGACACCAAGC+AGG 0.552452 7.1:-10933196 MS.gene018707:CDS
GTCCGAGCAACTTGGTAACA+AGG 0.554046 7.1:+10933802 None:intergenic
AATGTATCAGCTGCTGTCAA+CGG 0.554506 7.1:-10933729 MS.gene018707:CDS
CCCGAAATTTGCAAAGAAGA+AGG 0.555344 7.1:+10932708 None:intergenic
ATATTCCATGGCAGGTAGAA+CGG 0.558469 7.1:+10932635 None:intergenic
TGGAGGATAATTGTGATGGT+AGG 0.563401 7.1:-10933288 MS.gene018707:CDS
GGCAAATGGAAAATCTTTGG+AGG 0.563885 7.1:-10932431 MS.gene018707:CDS
AGCAATCATCATAGCTGGGA+TGG 0.564203 7.1:-10933862 MS.gene018707:CDS
CGAAGCTGAACCACAGCAAG+CGG 0.567125 7.1:-10933136 MS.gene018707:CDS
AGCCCCAAGCTTCCCAGATG+CGG 0.578715 7.1:+10932609 None:intergenic
AATAGTAAGTCATTGCAGCC+GGG 0.578730 7.1:+10933259 None:intergenic
ATGGAATATCATCCGCATCT+GGG 0.579157 7.1:-10932621 MS.gene018707:CDS
TTACACTGCTCTAGTTGCTA+AGG 0.580370 7.1:-10933208 MS.gene018707:CDS
CAGTCAAAATCTATTCCAGA+AGG 0.585368 7.1:-10933007 MS.gene018707:CDS
CTCTCATTGACAAGATAGGA+AGG 0.588657 7.1:-10932852 MS.gene018707:CDS
TTTGCCTTCTCCGCTTGCTG+TGG 0.589290 7.1:+10933126 None:intergenic
ATTGTGTCCAAAAGAAAGGC+CGG 0.592471 7.1:+10933587 None:intergenic
AATTTCTGCTGGCACAACAA+AGG 0.595387 7.1:+10932672 None:intergenic
GGTGAAAACAAAGAAGAAGC+CGG 0.596782 7.1:-10932400 MS.gene018707:CDS
GACATTATAGTAGCCGAAAG+CGG 0.598882 7.1:+10933495 None:intergenic
CAAAATTCCAAACCCCTGCA+TGG 0.608713 7.1:+10933422 None:intergenic
GCAATCATCATAGCTGGGAT+GGG 0.611817 7.1:-10933861 MS.gene018707:CDS
CATTTGGAGGATAATTGTGA+TGG 0.611828 7.1:-10933292 MS.gene018707:CDS
ACACAATCCAAAATCTGTCA+TGG 0.612120 7.1:-10933571 MS.gene018707:CDS
CAGATGCGGATGATATTCCA+TGG 0.613085 7.1:+10932623 None:intergenic
TCACAGCAATCATCATAGCT+GGG 0.613106 7.1:-10933866 MS.gene018707:CDS
AGTCCAGTGATCATATGGAA+TGG 0.614289 7.1:+10932774 None:intergenic
ATCCGCATCTGGGAAGCTTG+GGG 0.619152 7.1:-10932611 MS.gene018707:CDS
GTATATGCGTCCGAGCAACT+TGG 0.620992 7.1:+10933794 None:intergenic
AAGGAGTTCATGAGTCGACA+TGG 0.626280 7.1:-10933084 MS.gene018707:CDS
TCGTACGCAGTTGACCCTGT+TGG 0.626608 7.1:-10933339 MS.gene018707:CDS
TTCTGCTGGCACAACAAAGG+TGG 0.627572 7.1:+10932675 None:intergenic
TCCAGGCTACTGGTTTACAG+TGG 0.634566 7.1:-10932875 MS.gene018707:CDS
TCCGAGCAACTTGGTAACAA+GGG 0.641166 7.1:+10933803 None:intergenic
GGCTTGGTGATAAGTTGGGT+AGG 0.643521 7.1:-10933662 MS.gene018707:CDS
GCTTCGCAGCACCATCAACA+TGG 0.643769 7.1:+10933769 None:intergenic
TTGATGTGGCGAAAACGCAA+TGG 0.645511 7.1:-10933896 MS.gene018707:CDS
ACAGCAGCTGATACATTGGG+TGG 0.646579 7.1:+10933735 None:intergenic
AGATTGAAGAGTAATGGCAA+AGG 0.661668 7.1:-10933943 None:intergenic
GTACGATGGTGAATCAAACA+TGG 0.664206 7.1:+10933356 None:intergenic
TATTCTAATAAGAAGACTCG+TGG 0.670227 7.1:-10933468 MS.gene018707:CDS
GGTGCTAAATGCACTTGATG+TGG 0.678447 7.1:-10933910 MS.gene018707:CDS
GTGGAACAGTTGAACCAACA+GGG 0.679599 7.1:+10933325 None:intergenic
ACAGGGTCAACTGCGTACGA+TGG 0.693098 7.1:+10933342 None:intergenic
TCTTCACACCAATACCTGCA+GGG 0.695753 7.1:+10932518 None:intergenic
TGTATCAGCTGCTGTCAACG+GGG 0.711594 7.1:-10933727 MS.gene018707:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGTTTAAAATCCAATTGA+TGG - chr7.1:10933439-10933458 MS.gene018707:CDS 25.0%
!! AGGTTTAAAATCCAATTGAT+GGG - chr7.1:10933440-10933459 MS.gene018707:CDS 25.0%
ACCTTCTTCTTTGCAAATTT+CGG - chr7.1:10933563-10933582 MS.gene018707:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG + chr7.1:10933454-10933473 None:intergenic 30.0%
TATTCTAATAAGAAGACTCG+TGG - chr7.1:10932804-10932823 MS.gene018707:CDS 30.0%
AAGAATTCACTGCTTCTCTT+GGG - chr7.1:10933773-10933792 MS.gene018707:CDS 35.0%
AAGGATATCTTCAGTGCAAT+TGG - chr7.1:10933284-10933303 MS.gene018707:CDS 35.0%
ACACAATCCAAAATCTGTCA+TGG - chr7.1:10932701-10932720 MS.gene018707:CDS 35.0%
ATAATGGTAATCTGCTCCAT+TGG - chr7.1:10932660-10932679 MS.gene018707:CDS 35.0%
ATATCTTCAGTGCAATTGGT+TGG - chr7.1:10933288-10933307 MS.gene018707:CDS 35.0%
ATATGATCACTGGACTCATA+AGG - chr7.1:10933505-10933524 MS.gene018707:CDS 35.0%
CAGTCAAAATCTATTCCAGA+AGG - chr7.1:10933265-10933284 MS.gene018707:CDS 35.0%
CATTTGGAGGATAATTGTGA+TGG - chr7.1:10932980-10932999 MS.gene018707:CDS 35.0%
CCTTCTTCTTTGCAAATTTC+GGG - chr7.1:10933564-10933583 MS.gene018707:CDS 35.0%
TACTTGGTACAACAAGTACT+TGG - chr7.1:10933219-10933238 MS.gene018707:CDS 35.0%
TGAGGCAAATGGAAAATCTT+TGG - chr7.1:10933838-10933857 MS.gene018707:CDS 35.0%
TGGTATGACACTGATGATAA+TGG - chr7.1:10932644-10932663 MS.gene018707:CDS 35.0%
TTATGAGTCCAGTGATCATA+TGG + chr7.1:10933506-10933525 None:intergenic 35.0%
TTGGATTGTGTCCAAAAGAA+AGG + chr7.1:10932692-10932711 None:intergenic 35.0%
! AAAGATTTTCCATTTGCCTC+AGG + chr7.1:10933839-10933858 None:intergenic 35.0%
! GGGATTCCTTTTTACTTTCT+TGG - chr7.1:10933811-10933830 MS.gene018707:CDS 35.0%
!! ATCATATGGCTTGTTGTCAA+AGG - chr7.1:10933169-10933188 MS.gene018707:CDS 35.0%
AACCATGAATGCACTTGAAG+AGG - chr7.1:10933325-10933344 MS.gene018707:CDS 40.0%
AACCTCTTCAAGTGCATTCA+TGG + chr7.1:10933330-10933349 None:intergenic 40.0%
AATAGTAAGTCATTGCAGCC+GGG + chr7.1:10933016-10933035 None:intergenic 40.0%
AATGTATCAGCTGCTGTCAA+CGG - chr7.1:10932543-10932562 MS.gene018707:CDS 40.0%
AATTTCTGCTGGCACAACAA+AGG + chr7.1:10933603-10933622 None:intergenic 40.0%
ACAACAAAGGTGGTAGCATT+AGG + chr7.1:10933590-10933609 None:intergenic 40.0%
ACATTATAGTAGCCGAAAGC+GGG + chr7.1:10932779-10932798 None:intergenic 40.0%
ACTCATAAGGATCACCGAAT+CGG - chr7.1:10933518-10933537 MS.gene018707:CDS 40.0%
AGTCCAGTGATCATATGGAA+TGG + chr7.1:10933501-10933520 None:intergenic 40.0%
ATATTCCATGGCAGGTAGAA+CGG + chr7.1:10933640-10933659 None:intergenic 40.0%
ATGGAATATCATCCGCATCT+GGG - chr7.1:10933651-10933670 MS.gene018707:CDS 40.0%
ATTGTGTCCAAAAGAAAGGC+CGG + chr7.1:10932688-10932707 None:intergenic 40.0%
CAATAGTAAGTCATTGCAGC+CGG + chr7.1:10933017-10933036 None:intergenic 40.0%
CAGGCACCAAGAAAGTAAAA+AGG + chr7.1:10933820-10933839 None:intergenic 40.0%
CATAGTTTCAGCTGCATTCA+AGG - chr7.1:10932893-10932912 MS.gene018707:CDS 40.0%
CCCGAAATTTGCAAAGAAGA+AGG + chr7.1:10933567-10933586 None:intergenic 40.0%
CGCATATACTACCATGTTGA+TGG - chr7.1:10932492-10932511 MS.gene018707:CDS 40.0%
CTAGCAGGAAAAATTTCTGC+TGG + chr7.1:10933614-10933633 None:intergenic 40.0%
CTCTCATTGACAAGATAGGA+AGG - chr7.1:10933420-10933439 MS.gene018707:CDS 40.0%
CTGCAATGACTTACTATTGG+CGG - chr7.1:10933018-10933037 MS.gene018707:CDS 40.0%
CTTTCGTTGGTACACTTACA+GGG - chr7.1:10932571-10932590 MS.gene018707:CDS 40.0%
GAAGAATTCACTGCTTCTCT+TGG - chr7.1:10933772-10933791 MS.gene018707:CDS 40.0%
GACATTATAGTAGCCGAAAG+CGG + chr7.1:10932780-10932799 None:intergenic 40.0%
GGCAAATGGAAAATCTTTGG+AGG - chr7.1:10933841-10933860 MS.gene018707:CDS 40.0%
GGTGAAAACAAAGAAGAAGC+CGG - chr7.1:10933872-10933891 MS.gene018707:CDS 40.0%
GTACGATGGTGAATCAAACA+TGG + chr7.1:10932919-10932938 None:intergenic 40.0%
TACCAAACCCAAGCCAAAAA+CGG + chr7.1:10932743-10932762 None:intergenic 40.0%
TCACAGCAATCATCATAGCT+GGG - chr7.1:10932406-10932425 MS.gene018707:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG - chr7.1:10932984-10933003 MS.gene018707:CDS 40.0%
TTACACTGCTCTAGTTGCTA+AGG - chr7.1:10933064-10933083 MS.gene018707:CDS 40.0%
TTCACAGCAATCATCATAGC+TGG - chr7.1:10932405-10932424 MS.gene018707:CDS 40.0%
TTCCACAAGCAGACTACATT+TGG - chr7.1:10932964-10932983 MS.gene018707:CDS 40.0%
TTGACAGCAGCTGATACATT+GGG + chr7.1:10932543-10932562 None:intergenic 40.0%
TTGCACTGAAGATATCCTTC+TGG + chr7.1:10933283-10933302 None:intergenic 40.0%
TTGCCATTCCATATGATCAC+TGG - chr7.1:10933495-10933514 MS.gene018707:CDS 40.0%
! AAATCTTTGGAGGAGATGTC+AGG - chr7.1:10933851-10933870 MS.gene018707:CDS 40.0%
! AGAGTTGCCATGACAGATTT+TGG + chr7.1:10932711-10932730 None:intergenic 40.0%
! CGACATGGATTACATCTACT+TGG - chr7.1:10933203-10933222 MS.gene018707:CDS 40.0%
! CTCTTTGCTTCTTCCGTTTT+TGG - chr7.1:10932727-10932746 MS.gene018707:CDS 40.0%
! TGCATTTGGGTTCTTGTACT+TGG - chr7.1:10933694-10933713 MS.gene018707:CDS 40.0%
! TTGGGCGTGGTTAACATTTT+GGG - chr7.1:10933791-10933810 MS.gene018707:CDS 40.0%
! TTGGGTAGGAAGAAAGTGTA+TGG - chr7.1:10932624-10932643 MS.gene018707:CDS 40.0%
!! ATGCAGGGGTTTGGAATTTT+GGG - chr7.1:10932852-10932871 MS.gene018707:CDS 40.0%
!!! TTTTACTTTCTTGGTGCCTG+AGG - chr7.1:10933820-10933839 MS.gene018707:CDS 40.0%
!!! TTTTGGCTTGGGTTTGGTAT+TGG - chr7.1:10932744-10932763 MS.gene018707:CDS 40.0%
AAAAGAAAGGCCGGAACCAA+TGG + chr7.1:10932679-10932698 None:intergenic 45.0%
AAAGAAGAAGCCGGAACCAA+TGG - chr7.1:10933881-10933900 MS.gene018707:CDS 45.0%
AAGGAGTTCATGAGTCGACA+TGG - chr7.1:10933188-10933207 MS.gene018707:CDS 45.0%
ACAATACCACGAAGCCGATT+CGG + chr7.1:10933535-10933554 None:intergenic 45.0%
AGATTGCTCCAACTCTCCAT+TGG + chr7.1:10933900-10933919 None:intergenic 45.0%
AGCAATCATCATAGCTGGGA+TGG - chr7.1:10932410-10932429 MS.gene018707:CDS 45.0%
ATGTATCAGCTGCTGTCAAC+GGG - chr7.1:10932544-10932563 MS.gene018707:CDS 45.0%
CAAAATTCCAAACCCCTGCA+TGG + chr7.1:10932853-10932872 None:intergenic 45.0%
CACAAGCAGACTACATTTGG+AGG - chr7.1:10932967-10932986 MS.gene018707:CDS 45.0%
CAGATGCGGATGATATTCCA+TGG + chr7.1:10933652-10933671 None:intergenic 45.0%
CATGGAATATCATCCGCATC+TGG - chr7.1:10933650-10933669 MS.gene018707:CDS 45.0%
CGGCTGCAATGACTTACTAT+TGG - chr7.1:10933015-10933034 MS.gene018707:CDS 45.0%
CTCCAAATGTAGTCTGCTTG+TGG + chr7.1:10932969-10932988 None:intergenic 45.0%
CTTGTACTTGGCACAGAACA+AGG - chr7.1:10933706-10933725 MS.gene018707:CDS 45.0%
GACAAGAGTAAAGCAGATGC+AGG - chr7.1:10933728-10933747 MS.gene018707:CDS 45.0%
GCAATCATCATAGCTGGGAT+GGG - chr7.1:10932411-10932430 MS.gene018707:CDS 45.0%
GCGGAGAAGGCAAAATCATA+TGG - chr7.1:10933155-10933174 MS.gene018707:CDS 45.0%
GCTCTATGTAGTACAGTTCC+AGG - chr7.1:10933380-10933399 MS.gene018707:CDS 45.0%
GCTTTCGTTGGTACACTTAC+AGG - chr7.1:10932570-10932589 MS.gene018707:CDS 45.0%
GGTGCTAAATGCACTTGATG+TGG - chr7.1:10932362-10932381 MS.gene018707:CDS 45.0%
GTGGAACAGTTGAACCAACA+GGG + chr7.1:10932950-10932969 None:intergenic 45.0%
GTGGCTCTCATTGACAAGAT+AGG - chr7.1:10933416-10933435 MS.gene018707:CDS 45.0%
GTTGACAGCAGCTGATACAT+TGG + chr7.1:10932544-10932563 None:intergenic 45.0%
TACATTGGGTGGCAATGTAC+CGG + chr7.1:10932529-10932548 None:intergenic 45.0%
TCCCTTGTTACCAAGTTGCT+CGG - chr7.1:10932468-10932487 MS.gene018707:CDS 45.0%
TCTTCACACCAATACCTGCA+GGG + chr7.1:10933757-10933776 None:intergenic 45.0%
TGTGGAACAGTTGAACCAAC+AGG + chr7.1:10932951-10932970 None:intergenic 45.0%
TTCTTCACACCAATACCTGC+AGG + chr7.1:10933758-10933777 None:intergenic 45.0%
TTGATGTGGCGAAAACGCAA+TGG - chr7.1:10932376-10932395 MS.gene018707:CDS 45.0%
! AGTGCATTCATGGTTTGTGC+AGG + chr7.1:10933320-10933339 None:intergenic 45.0%
! CTTACAGGGCAGCTTTTCTT+TGG - chr7.1:10932585-10932604 MS.gene018707:CDS 45.0%
! CTTGGGCGTGGTTAACATTT+TGG - chr7.1:10933790-10933809 MS.gene018707:CDS 45.0%
! GGATATGTCTAAGGTTCTGC+AGG - chr7.1:10933106-10933125 MS.gene018707:CDS 45.0%
! TCCGAGCAACTTGGTAACAA+GGG + chr7.1:10932472-10932491 None:intergenic 45.0%
!! ATTGGTTCCGGCCTTTCTTT+TGG - chr7.1:10932678-10932697 MS.gene018707:CDS 45.0%
!! CATGCAGGGGTTTGGAATTT+TGG - chr7.1:10932851-10932870 MS.gene018707:CDS 45.0%
!! GTAATCTGCTCCATTGGTTC+CGG - chr7.1:10932666-10932685 MS.gene018707:CDS 45.0%
!!! GCTTCTTCCGTTTTTGGCTT+GGG - chr7.1:10932733-10932752 MS.gene018707:CDS 45.0%
!!! TGCTTCTTCCGTTTTTGGCT+TGG - chr7.1:10932732-10932751 MS.gene018707:CDS 45.0%
!!! TTCCGTTTTTGGCTTGGGTT+TGG - chr7.1:10932738-10932757 MS.gene018707:CDS 45.0%
ACAGCAGCTGATACATTGGG+TGG + chr7.1:10932540-10932559 None:intergenic 50.0%
ACATTGGGTGGCAATGTACC+GGG + chr7.1:10932528-10932547 None:intergenic 50.0%
AGATTCCGTTCTACCTGCCA+TGG - chr7.1:10933632-10933651 MS.gene018707:CDS 50.0%
AGTTGCTAAGGACACCAAGC+AGG - chr7.1:10933076-10933095 MS.gene018707:CDS 50.0%
CAGGTAGAACGGAATCTAGC+AGG + chr7.1:10933629-10933648 None:intergenic 50.0%
GCAGTGTAACGAGCAGTTTC+TGG + chr7.1:10933053-10933072 None:intergenic 50.0%
GGCAAAGACTGCAGCAATGA+AGG + chr7.1:10932832-10932851 None:intergenic 50.0%
GTAGTACAGTTCCAGGCTAC+TGG - chr7.1:10933387-10933406 MS.gene018707:CDS 50.0%
GTATATGCGTCCGAGCAACT+TGG + chr7.1:10932481-10932500 None:intergenic 50.0%
TGCGGATGATATTCCATGGC+AGG + chr7.1:10933648-10933667 None:intergenic 50.0%
TGTATCAGCTGCTGTCAACG+GGG - chr7.1:10932545-10932564 MS.gene018707:CDS 50.0%
TTCTGCTGGCACAACAAAGG+TGG + chr7.1:10933600-10933619 None:intergenic 50.0%
! AGCTGGGATGGGCTTCTTTA+CGG - chr7.1:10932422-10932441 MS.gene018707:CDS 50.0%
! GCATTCATGGTTTGTGCAGG+TGG + chr7.1:10933317-10933336 None:intergenic 50.0%
! GGGCTATGGTTGGTGCATTT+GGG - chr7.1:10933681-10933700 MS.gene018707:CDS 50.0%
! GTCCGAGCAACTTGGTAACA+AGG + chr7.1:10932473-10932492 None:intergenic 50.0%
! TGGCTTGGGTTTGGTATTGG+TGG - chr7.1:10932747-10932766 MS.gene018707:CDS 50.0%
!! CAGCTTTTCTTTGGCTGGCT+TGG - chr7.1:10932594-10932613 MS.gene018707:CDS 50.0%
!! CAGGGGTTTGGAATTTTGGG+AGG - chr7.1:10932855-10932874 MS.gene018707:CDS 50.0%
!! CTCCAACTCTCCATTGGTTC+CGG + chr7.1:10933894-10933913 None:intergenic 50.0%
!! GGCTGGCTTGGTGATAAGTT+GGG - chr7.1:10932606-10932625 MS.gene018707:CDS 50.0%
!! GGCTTGGTGATAAGTTGGGT+AGG - chr7.1:10932610-10932629 MS.gene018707:CDS 50.0%
!! GGGTTTGGAATTTTGGGAGG+TGG - chr7.1:10932858-10932877 MS.gene018707:CDS 50.0%
!! TCCAGGCTACTGGTTTACAG+TGG - chr7.1:10933397-10933416 MS.gene018707:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGT+TGG - chr7.1:10932605-10932624 MS.gene018707:CDS 50.0%
!! TTCTTGGTGCCTGAGGCAAA+TGG - chr7.1:10933827-10933846 MS.gene018707:CDS 50.0%
ACAGGGTCAACTGCGTACGA+TGG + chr7.1:10932933-10932952 None:intergenic 55.0%
AGCCGGAACCAATGGAGAGT+TGG - chr7.1:10933889-10933908 MS.gene018707:CDS 55.0%
ATCCGCATCTGGGAAGCTTG+GGG - chr7.1:10933661-10933680 MS.gene018707:CDS 55.0%
ATCTGGGAAGCTTGGGGCTA+TGG - chr7.1:10933667-10933686 MS.gene018707:CDS 55.0%
CATCCGCATCTGGGAAGCTT+GGG - chr7.1:10933660-10933679 MS.gene018707:CDS 55.0%
CGAAGCTGAACCACAGCAAG+CGG - chr7.1:10933136-10933155 MS.gene018707:CDS 55.0%
CTGCAGTCTTTGCCATGCAG+GGG - chr7.1:10932838-10932857 MS.gene018707:CDS 55.0%
GCAGGTTACCCTGCAGGTAT+TGG - chr7.1:10933746-10933765 MS.gene018707:CDS 55.0%
GCCACTGTAAACCAGTAGCC+TGG + chr7.1:10933401-10933420 None:intergenic 55.0%
GCTGCAGTCTTTGCCATGCA+GGG - chr7.1:10932837-10932856 MS.gene018707:CDS 55.0%
GCTTCGCAGCACCATCAACA+TGG + chr7.1:10932506-10932525 None:intergenic 55.0%
GGCTGCAGCGGATATGTCTA+AGG - chr7.1:10933097-10933116 MS.gene018707:CDS 55.0%
GTCTTTGCCATGCAGGGGTT+TGG - chr7.1:10932843-10932862 MS.gene018707:CDS 55.0%
TCATCCGCATCTGGGAAGCT+TGG - chr7.1:10933659-10933678 MS.gene018707:CDS 55.0%
TCGTACGCAGTTGACCCTGT+TGG - chr7.1:10932933-10932952 MS.gene018707:CDS 55.0%
TGAACCACAGCAAGCGGAGA+AGG - chr7.1:10933142-10933161 MS.gene018707:CDS 55.0%
TGCTGCAGTCTTTGCCATGC+AGG - chr7.1:10932836-10932855 MS.gene018707:CDS 55.0%
TGGTGGAGACTACCCGCTTT+CGG - chr7.1:10932764-10932783 MS.gene018707:CDS 55.0%
TTCACTGCTTCTCTTGGGCG+TGG - chr7.1:10933778-10933797 MS.gene018707:CDS 55.0%
! CAGGGCAGCTTTTCTTTGGC+TGG - chr7.1:10932589-10932608 MS.gene018707:CDS 55.0%
! GGGGCTATGGTTGGTGCATT+TGG - chr7.1:10933680-10933699 MS.gene018707:CDS 55.0%
! GTCAACGGGGTTGCTTTCGT+TGG - chr7.1:10932558-10932577 MS.gene018707:CDS 55.0%
! TTTGCCTTCTCCGCTTGCTG+TGG + chr7.1:10933149-10933168 None:intergenic 55.0%
!! TGTGATGGTAGGAGCACTCC+CGG - chr7.1:10932995-10933014 MS.gene018707:CDS 55.0%
AGCCCCAAGCTTCCCAGATG+CGG + chr7.1:10933666-10933685 None:intergenic 60.0%
CATATCCGCTGCAGCCTGCT+TGG + chr7.1:10933093-10933112 None:intergenic 60.0%
GCAGATGCAGGTTACCCTGC+AGG - chr7.1:10933740-10933759 MS.gene018707:CDS 60.0%
GGGAAGCTTGGGGCTATGGT+TGG - chr7.1:10933671-10933690 MS.gene018707:CDS 60.0%
! GGATCACCGAATCGGCTTCG+TGG - chr7.1:10933526-10933545 MS.gene018707:CDS 60.0%
!! GTTGATGGTGCTGCGAAGCC+CGG - chr7.1:10932507-10932526 MS.gene018707:CDS 60.0%
GGACACCAAGCAGGCTGCAG+CGG - chr7.1:10933085-10933104 MS.gene018707:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 10932342 10933952 10932342 ID=MS.gene018707
chr7.1 mRNA 10932342 10933952 10932342 ID=MS.gene018707.t1;Parent=MS.gene018707
chr7.1 exon 10932342 10933952 10932342 ID=MS.gene018707.t1.exon1;Parent=MS.gene018707.t1
chr7.1 CDS 10932342 10933952 10932342 ID=cds.MS.gene018707.t1;Parent=MS.gene018707.t1
Gene Sequence

>MS.gene018707

ATGGCAAAGGATCAAATTCAGGTGCTAAATGCACTTGATGTGGCGAAAACGCAATGGTATCACTTCACAGCAATCATCATAGCTGGGATGGGCTTCTTTACGGATGCATATGATCTGTTCTGCATATCCCTTGTTACCAAGTTGCTCGGACGCATATACTACCATGTTGATGGTGCTGCGAAGCCCGGTACATTGCCACCCAATGTATCAGCTGCTGTCAACGGGGTTGCTTTCGTTGGTACACTTACAGGGCAGCTTTTCTTTGGCTGGCTTGGTGATAAGTTGGGTAGGAAGAAAGTGTATGGTATGACACTGATGATAATGGTAATCTGCTCCATTGGTTCCGGCCTTTCTTTTGGACACAATCCAAAATCTGTCATGGCAACTCTTTGCTTCTTCCGTTTTTGGCTTGGGTTTGGTATTGGTGGAGACTACCCGCTTTCGGCTACTATAATGTCAGAGTATTCTAATAAGAAGACTCGTGGTGCCTTCATTGCTGCAGTCTTTGCCATGCAGGGGTTTGGAATTTTGGGAGGTGGTATATTTGCAATCATAGTTTCAGCTGCATTCAAGGCCATGTTTGATTCACCATCGTACGCAGTTGACCCTGTTGGTTCAACTGTTCCACAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCGGCTGCAATGACTTACTATTGGCGGATGAAGATGCCAGAAACTGCTCGTTACACTGCTCTAGTTGCTAAGGACACCAAGCAGGCTGCAGCGGATATGTCTAAGGTTCTGCAGGTTGACATCGAAGCTGAACCACAGCAAGCGGAGAAGGCAAAATCATATGGCTTGTTGTCAAAGGAGTTCATGAGTCGACATGGATTACATCTACTTGGTACAACAAGTACTTGGTTCTTGCTTGATATAGCATTTTACAGTCAAAATCTATTCCAGAAGGATATCTTCAGTGCAATTGGTTGGATACCACCTGCACAAACCATGAATGCACTTGAAGAGGTTTACAGAATCGCAAGAGCTCAAACACTTATTGCTCTATGTAGTACAGTTCCAGGCTACTGGTTTACAGTGGCTCTCATTGACAAGATAGGAAGGTTTAAAATCCAATTGATGGGATTCTTCTTTATGACTGTCTTCATGTTTGCTCTTGCCATTCCATATGATCACTGGACTCATAAGGATCACCGAATCGGCTTCGTGGTATTGTACTCATTGACCTTCTTCTTTGCAAATTTCGGGCCTAATGCTACCACCTTTGTTGTGCCAGCAGAAATTTTTCCTGCTAGATTCCGTTCTACCTGCCATGGAATATCATCCGCATCTGGGAAGCTTGGGGCTATGGTTGGTGCATTTGGGTTCTTGTACTTGGCACAGAACAAGGACAAGAGTAAAGCAGATGCAGGTTACCCTGCAGGTATTGGTGTGAAGAATTCACTGCTTCTCTTGGGCGTGGTTAACATTTTGGGATTCCTTTTTACTTTCTTGGTGCCTGAGGCAAATGGAAAATCTTTGGAGGAGATGTCAGGTGAAAACAAAGAAGAAGCCGGAACCAATGGAGAGTTGGAGCAATCTCATTCTCATAACAGAACTGTTTCACATGTTTAG
Protein sequence

>MS.gene018707.t1

MAKDQIQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFVGTLTGQLFFGWLGDKLGRKKVYGMTLMIMVICSIGSGLSFGHNPKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAIIVSAAFKAMFDSPSYAVDPVGSTVPQADYIWRIIVMVGALPAAMTYYWRMKMPETARYTALVAKDTKQAAADMSKVLQVDIEAEPQQAEKAKSYGLLSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYRIARAQTLIALCSTVPGYWFTVALIDKIGRFKIQLMGFFFMTVFMFALAIPYDHWTHKDHRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQNKDKSKADAGYPAGIGVKNSLLLLGVVNILGFLFTFLVPEANGKSLEEMSGENKEEAGTNGELEQSHSHNRTVSHV