Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059428.t1 | XP_003607875.1 | 99 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 5.60E-293 | 1016.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059428.t1 | Q9S735 | 64.1 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 1.8e-183 | 643.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059428.t1 | A2Q296 | 99.0 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 4.0e-293 | 1016.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059428 | MS.gene062065 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene059428 | MS.gene067567 | 0.881469 | 2.34E-70 | -1.69E-46 |
| MS.gene059428 | MS.gene072560 | 0.800899 | 1.16E-48 | -1.69E-46 |
| MS.gene059428 | MS.gene072851 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene059428 | MS.gene27711 | 0.841409 | 4.84E-58 | -1.69E-46 |
| MS.gene059428 | MS.gene51749 | 0.815794 | 7.70E-52 | -1.69E-46 |
| MS.gene059428 | MS.gene52226 | 0.805675 | 1.19E-49 | -1.69E-46 |
| MS.gene059428 | MS.gene56432 | 0.92844 | 2.88E-92 | -1.69E-46 |
| MS.gene059428 | MS.gene64855 | 0.841385 | 4.91E-58 | -1.69E-46 |
| MS.gene059428 | MS.gene67550 | 0.827941 | 1.18E-54 | -1.69E-46 |
| MS.gene059428 | MS.gene68355 | 0.844949 | 5.51E-59 | -1.69E-46 |
| MS.gene059428 | MS.gene98501 | 0.807896 | 4.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059428 | MS.gene97007 | PPI |
| MS.gene059428 | MS.gene052674 | PPI |
| MS.gene059428 | MS.gene018708 | PPI |
| MS.gene059428 | MS.gene23490 | PPI |
| MS.gene059428 | MS.gene020517 | PPI |
| MS.gene059428 | MS.gene052675 | PPI |
| MS.gene059428 | MS.gene006892 | PPI |
| MS.gene059428 | MS.gene052677 | PPI |
| MS.gene059428 | MS.gene25185 | PPI |
| MS.gene62686 | MS.gene059428 | PPI |
| MS.gene015655 | MS.gene059428 | PPI |
| MS.gene059428 | MS.gene020364 | PPI |
| MS.gene059428 | MS.gene97006 | PPI |
| MS.gene23489 | MS.gene059428 | PPI |
| MS.gene059428 | MS.gene56432 | PPI |
| MS.gene059428 | MS.gene98973 | PPI |
| MS.gene059428 | MS.gene020365 | PPI |
| MS.gene059428 | MS.gene018707 | PPI |
| MS.gene059428 | MS.gene067063 | PPI |
| MS.gene059428 | MS.gene83067 | PPI |
| MS.gene059428 | MS.gene067567 | PPI |
| MS.gene059428 | MS.gene026529 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059428.t1 | MTR_4g083960 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1060 |
| MS.gene059428.t1 | MTR_1g074930 | 55.075 | 532 | 215 | 10 | 1 | 513 | 1 | 527 | 0.0 | 548 |
| MS.gene059428.t1 | MTR_1g043200 | 54.253 | 529 | 222 | 9 | 1 | 514 | 1 | 524 | 0.0 | 536 |
| MS.gene059428.t1 | MTR_1g043220 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| MS.gene059428.t1 | MTR_1g043290 | 54.221 | 533 | 220 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| MS.gene059428.t1 | MTR_3g082700 | 55.426 | 516 | 210 | 11 | 1 | 501 | 1 | 511 | 0.0 | 533 |
| MS.gene059428.t1 | MTR_1g069935 | 53.179 | 519 | 223 | 10 | 3 | 508 | 4 | 515 | 0.0 | 528 |
| MS.gene059428.t1 | MTR_7g096870 | 52.751 | 527 | 229 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| MS.gene059428.t1 | MTR_7g096880 | 52.166 | 531 | 220 | 12 | 5 | 510 | 6 | 527 | 1.78e-177 | 510 |
| MS.gene059428.t1 | MTR_1g074940 | 52.941 | 510 | 212 | 10 | 5 | 501 | 6 | 500 | 2.39e-177 | 509 |
| MS.gene059428.t1 | MTR_1g069930 | 50.662 | 529 | 225 | 12 | 1 | 507 | 1 | 515 | 5.15e-172 | 496 |
| MS.gene059428.t1 | MTR_1g028600 | 49.615 | 520 | 238 | 11 | 4 | 513 | 2 | 507 | 2.93e-163 | 474 |
| MS.gene059428.t1 | MTR_5g068140 | 48.812 | 547 | 234 | 14 | 1 | 514 | 1 | 534 | 7.07e-157 | 458 |
| MS.gene059428.t1 | MTR_6g088450 | 24.951 | 513 | 306 | 17 | 12 | 500 | 45 | 502 | 9.97e-20 | 92.8 |
| MS.gene059428.t1 | MTR_3g084110 | 24.236 | 491 | 303 | 17 | 27 | 503 | 35 | 470 | 1.66e-18 | 89.0 |
| MS.gene059428.t1 | MTR_7g005910 | 22.088 | 498 | 310 | 17 | 26 | 505 | 39 | 476 | 4.49e-14 | 75.1 |
| MS.gene059428.t1 | MTR_1g116650 | 22.222 | 378 | 244 | 13 | 132 | 505 | 178 | 509 | 1.22e-12 | 70.5 |
| MS.gene059428.t1 | MTR_4g072030 | 21.503 | 479 | 288 | 15 | 61 | 505 | 60 | 484 | 6.88e-12 | 68.2 |
| MS.gene059428.t1 | MTR_1g116660 | 20.842 | 499 | 316 | 17 | 26 | 505 | 41 | 479 | 9.43e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059428.t1 | AT1G76430 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 674 |
| MS.gene059428.t1 | AT1G20860 | 63.218 | 522 | 176 | 7 | 5 | 517 | 55 | 569 | 0.0 | 663 |
| MS.gene059428.t1 | AT1G20860 | 63.218 | 522 | 176 | 7 | 5 | 517 | 3 | 517 | 0.0 | 662 |
| MS.gene059428.t1 | AT5G43350 | 53.992 | 526 | 218 | 11 | 5 | 513 | 6 | 524 | 0.0 | 539 |
| MS.gene059428.t1 | AT5G43360 | 54.247 | 518 | 215 | 11 | 5 | 507 | 6 | 516 | 0.0 | 533 |
| MS.gene059428.t1 | AT3G54700 | 53.728 | 523 | 219 | 11 | 5 | 513 | 6 | 519 | 0.0 | 529 |
| MS.gene059428.t1 | AT3G54700 | 53.728 | 523 | 219 | 11 | 5 | 513 | 6 | 519 | 0.0 | 529 |
| MS.gene059428.t1 | AT2G38940 | 54.231 | 520 | 214 | 13 | 1 | 503 | 1 | 513 | 0.0 | 526 |
| MS.gene059428.t1 | AT5G43370 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 3.69e-179 | 514 |
| MS.gene059428.t1 | AT5G43370 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 3.69e-179 | 514 |
| MS.gene059428.t1 | AT2G32830 | 51.509 | 530 | 231 | 11 | 3 | 513 | 4 | 526 | 8.21e-178 | 511 |
| MS.gene059428.t1 | AT5G43340 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 2.70e-171 | 494 |
| MS.gene059428.t1 | AT4G08878 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 1.89e-72 | 232 |
| MS.gene059428.t1 | AT4G08895 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 6.23e-27 | 106 |
| MS.gene059428.t1 | AT2G43330 | 22.081 | 394 | 253 | 10 | 132 | 512 | 131 | 483 | 9.63e-15 | 77.0 |
| MS.gene059428.t1 | AT3G18830 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 7.66e-12 | 68.2 |
Find 141 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4.4:+29061941 | MS.gene059428:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4.4:+29062019 | MS.gene059428:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4.4:-29061502 | None:intergenic |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4.4:-29059508 | None:intergenic |
| TTGGATCTGTTGGATTTCTT+TGG | 0.219700 | 4.4:+29062068 | MS.gene059428:CDS |
| GGTTTCTTTAGATTCTTCTT+AGG | 0.224645 | 4.4:+29059205 | MS.gene059428:CDS |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4.4:+29059269 | MS.gene059428:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4.4:-29061873 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4.4:+29059324 | MS.gene059428:CDS |
| GGTTGACTTGACGGATTTCT+TGG | 0.274248 | 4.4:-29058988 | None:intergenic |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4.4:+29059473 | MS.gene059428:CDS |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4.4:+29061749 | MS.gene059428:CDS |
| TGGATCTGTTGGATTTCTTT+GGG | 0.310383 | 4.4:+29062069 | MS.gene059428:CDS |
| GGAAACTATGGGAAGGTCTT+TGG | 0.311857 | 4.4:+29062207 | MS.gene059428:CDS |
| TTTAGATTCTTCTTAGGGCT+TGG | 0.319569 | 4.4:+29059211 | MS.gene059428:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4.4:+29059345 | MS.gene059428:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4.4:-29061521 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4.4:+29061996 | MS.gene059428:CDS |
| GTTTCTTTAGATTCTTCTTA+GGG | 0.354585 | 4.4:+29059206 | MS.gene059428:CDS |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4.4:-29059122 | None:intergenic |
| AGCTCTCTTTGTTGTACATA+TGG | 0.368396 | 4.4:-29059164 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4.4:+29062037 | MS.gene059428:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4.4:+29059076 | MS.gene059428:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4.4:+29061867 | MS.gene059428:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4.4:-29059250 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.379282 | 4.4:+29059217 | MS.gene059428:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4.4:+29059220 | MS.gene059428:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4.4:-29059263 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.396679 | 4.4:-29059069 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4.4:-29061965 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4.4:+29061904 | MS.gene059428:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4.4:+29059136 | MS.gene059428:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4.4:+29062020 | MS.gene059428:CDS |
| CAACGACCGGGTTGACTTGA+CGG | 0.415324 | 4.4:-29058997 | None:intergenic |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4.4:+29061914 | MS.gene059428:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4.4:+29059357 | MS.gene059428:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4.4:+29062049 | MS.gene059428:CDS |
| AGACCTTCCCATAGTTTCCT+TGG | 0.431457 | 4.4:-29062203 | None:intergenic |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4.4:+29062033 | MS.gene059428:CDS |
| GCCTTCGGCCAACTCCTATT+CGG | 0.447789 | 4.4:+29059055 | MS.gene059428:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4.4:+29061808 | MS.gene059428:CDS |
| GGTGCAATCATTGGATCTGT+TGG | 0.456131 | 4.4:+29062058 | MS.gene059428:CDS |
| GTTGGCCGAAGGCGGTTCCT+AGG | 0.459158 | 4.4:-29059045 | None:intergenic |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4.4:+29059422 | MS.gene059428:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4.4:+29058865 | MS.gene059428:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4.4:-29061510 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4.4:+29061990 | MS.gene059428:CDS |
| GCTTTCATTCCAATCCCCTT+AGG | 0.467608 | 4.4:-29062121 | None:intergenic |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4.4:-29059424 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4.4:-29061978 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4.4:-29061655 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4.4:+29062157 | MS.gene059428:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4.4:-29061551 | None:intergenic |
| CATGGATATCCTAAGGGGAT+TGG | 0.474356 | 4.4:+29062112 | MS.gene059428:CDS |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4.4:-29062004 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4.4:-29061989 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4.4:+29062139 | MS.gene059428:CDS |
| CTCGTCTCCGTCGCACTCCT+AGG | 0.482773 | 4.4:+29059028 | MS.gene059428:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4.4:-29061741 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4.4:-29058877 | None:intergenic |
| CAGCGGTTCGAAGCCGGCGA+CGG | 0.486295 | 4.4:+29059387 | MS.gene059428:CDS |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4.4:-29061643 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4.4:-29061534 | None:intergenic |
| GAAAATGGCAAGAGGGTTGA+AGG | 0.490649 | 4.4:+29058817 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4.4:+29061421 | MS.gene059428:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4.4:+29059442 | MS.gene059428:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4.4:+29061897 | MS.gene059428:CDS |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.495311 | 4.4:+29059381 | MS.gene059428:CDS |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4.4:-29061709 | None:intergenic |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4.4:+29062142 | MS.gene059428:CDS |
| TTGACGGATTTCTTGGTGGT+CGG | 0.509656 | 4.4:-29058981 | None:intergenic |
| GAAGGAGCATGGATATCCTA+AGG | 0.510884 | 4.4:+29062105 | MS.gene059428:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4.4:-29061721 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4.4:-29061872 | None:intergenic |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4.4:+29058887 | MS.gene059428:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4.4:+29062156 | MS.gene059428:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4.4:-29058888 | None:intergenic |
| CAAAATCCGAAAATGGCAAG+AGG | 0.521857 | 4.4:+29058809 | None:intergenic |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4.4:+29058886 | MS.gene059428:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4.4:+29061809 | MS.gene059428:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4.4:+29061555 | MS.gene059428:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4.4:-29061527 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4.4:-29061736 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4.4:+29062028 | MS.gene059428:CDS |
| GGCACATCAAAAGCCGTCGC+CGG | 0.533734 | 4.4:-29059400 | None:intergenic |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4.4:+29058881 | MS.gene059428:CDS |
| TGACTTGACGGATTTCTTGG+TGG | 0.538931 | 4.4:-29058985 | None:intergenic |
| ACGAGGGCTGAGACAACGAC+CGG | 0.541196 | 4.4:-29059010 | None:intergenic |
| GCACTCCTAGGAACCGCCTT+CGG | 0.541368 | 4.4:+29059040 | MS.gene059428:CDS |
| AAGGTCTTTGGAAGAGAATG+AGG | 0.545988 | 4.4:+29062219 | MS.gene059428:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4.4:+29059500 | MS.gene059428:CDS |
| AAAGGCCGGCGCCACGTCTA+CGG | 0.557844 | 4.4:+29059094 | MS.gene059428:CDS |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4.4:-29059472 | None:intergenic |
| CGAGGCGTCCGAATAGGAGT+TGG | 0.566689 | 4.4:-29059063 | None:intergenic |
| GCCTCGGAGACCTAAAAGGC+CGG | 0.568495 | 4.4:+29059080 | MS.gene059428:CDS |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4.4:-29061530 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4.4:+29059277 | MS.gene059428:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4.4:+29061896 | MS.gene059428:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4.4:-29061550 | None:intergenic |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4.4:+29062143 | MS.gene059428:CDS |
| AGAGAATTCTTGTGGCGACA+CGG | 0.577127 | 4.4:+29061563 | MS.gene059428:CDS |
| CAACTCCTATTCGGACGCCT+CGG | 0.577300 | 4.4:+29059064 | MS.gene059428:CDS |
| CGATACCGTAGACGTGGCGC+CGG | 0.577886 | 4.4:-29059099 | None:intergenic |
| AAGGAGCATGGATATCCTAA+GGG | 0.581879 | 4.4:+29062106 | MS.gene059428:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4.4:-29061762 | None:intergenic |
| TCCGAATAGGAGTTGGCCGA+AGG | 0.586471 | 4.4:-29059056 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4.4:-29061767 | None:intergenic |
| CTAGGAGTGCGACGGAGACG+AGG | 0.589067 | 4.4:-29059027 | None:intergenic |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4.4:+29061875 | MS.gene059428:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4.4:+29058944 | MS.gene059428:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4.4:+29059348 | MS.gene059428:CDS |
| TCACATAAAGAGAAGGAGCA+TGG | 0.593312 | 4.4:+29062094 | MS.gene059428:CDS |
| GGTTCTATCAGCCCTTGACT+CGG | 0.593955 | 4.4:+29058838 | MS.gene059428:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4.4:+29062087 | MS.gene059428:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4.4:-29061768 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4.4:+29062144 | MS.gene059428:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4.4:-29061546 | None:intergenic |
| TCACCAAGGAAACTATGGGA+AGG | 0.613776 | 4.4:+29062200 | MS.gene059428:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4.4:+29062010 | MS.gene059428:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4.4:-29059421 | None:intergenic |
| AAGAGGTTCTTTCATAGCTG+CGG | 0.616245 | 4.4:+29059294 | MS.gene059428:CDS |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4.4:-29058939 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4.4:+29062021 | MS.gene059428:CDS |
| GAATAGGAGTTGGCCGAAGG+CGG | 0.628666 | 4.4:-29059053 | None:intergenic |
| TGATGAGTGTGATGGAGAAG+AGG | 0.629463 | 4.4:-29058931 | None:intergenic |
| GGCGGTTCCTAGGAGTGCGA+CGG | 0.633327 | 4.4:-29059035 | None:intergenic |
| AAAATCCGAAAATGGCAAGA+GGG | 0.638563 | 4.4:+29058810 | None:intergenic |
| CGAGGGCTGAGACAACGACC+GGG | 0.642058 | 4.4:-29059009 | None:intergenic |
| TAGGAGTGCGACGGAGACGA+GGG | 0.643293 | 4.4:-29059026 | None:intergenic |
| AGAAATCCGTCAAGTCAACC+CGG | 0.643622 | 4.4:+29058991 | MS.gene059428:CDS |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4.4:+29061694 | MS.gene059428:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4.4:+29061454 | MS.gene059428:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4.4:-29061975 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4.4:-29061988 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4.4:-29062143 | None:intergenic |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4.4:-29061783 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4.4:+29059370 | MS.gene059428:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4.4:+29059425 | MS.gene059428:CDS |
| AGGAGCATGGATATCCTAAG+GGG | 0.695397 | 4.4:+29062107 | MS.gene059428:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4.4:-29059105 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4.4:+29061785 | MS.gene059428:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATTATATATAAAA+AGG | + | chr4.4:29059623-29059642 | MS.gene059428:intron | 0.0% |
| !! | AAATATATTATATATAAAAA+GGG | + | chr4.4:29059624-29059643 | MS.gene059428:intron | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | - | chr4.4:29060186-29060205 | None:intergenic | 0.0% |
| !! | TATAAAATTTAAATTCAACT+AGG | - | chr4.4:29060598-29060617 | None:intergenic | 10.0% |
| !! | TTAAATTCAAATGAAAATAA+TGG | + | chr4.4:29060507-29060526 | MS.gene059428:intron | 10.0% |
| !!! | TGGTTTTTTTTTTTTTTAAA+TGG | + | chr4.4:29059599-29059618 | MS.gene059428:intron | 10.0% |
| !! | AAAAAAAAAAAATGAACACT+TGG | - | chr4.4:29059924-29059943 | None:intergenic | 15.0% |
| !! | AACTTATTATCGAAATAAAT+TGG | - | chr4.4:29061154-29061173 | None:intergenic | 15.0% |
| !! | ACAAAATGCATTATTTAAAA+GGG | - | chr4.4:29060396-29060415 | None:intergenic | 15.0% |
| !! | ATTAAATATACTAAGTATAG+AGG | - | chr4.4:29059561-29059580 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | - | chr4.4:29060668-29060687 | None:intergenic | 15.0% |
| !! | TTAAATATACTAAGTATAGA+GGG | - | chr4.4:29059560-29059579 | None:intergenic | 15.0% |
| !!! | GTGTATTTTTATTTTCTTTT+TGG | - | chr4.4:29059670-29059689 | None:intergenic | 15.0% |
| !!! | TAAAGACTATCTAAAAATTT+TGG | + | chr4.4:29060252-29060271 | MS.gene059428:intron | 15.0% |
| !!! | TTCTAACTATTTTTAATGTT+CGG | - | chr4.4:29060106-29060125 | None:intergenic | 15.0% |
| !! | AAAATATATTGATGTCTTTG+TGG | - | chr4.4:29060285-29060304 | None:intergenic | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | + | chr4.4:29060960-29060979 | MS.gene059428:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | + | chr4.4:29060961-29060980 | MS.gene059428:intron | 20.0% |
| !! | ATGGCATTAATTAAATGTAT+TGG | + | chr4.4:29060526-29060545 | MS.gene059428:intron | 20.0% |
| !! | CACAAAATGCATTATTTAAA+AGG | - | chr4.4:29060397-29060416 | None:intergenic | 20.0% |
| !! | TAATTAGTATAGAAAATGCA+AGG | + | chr4.4:29060866-29060885 | MS.gene059428:intron | 20.0% |
| !! | TTACGGACAAAAAAAAAAAT+TGG | - | chr4.4:29061002-29061021 | None:intergenic | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | - | chr4.4:29061312-29061331 | None:intergenic | 20.0% |
| !!! | ATTCTTAAATATCTGAAGTT+TGG | + | chr4.4:29059579-29059598 | MS.gene059428:intron | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | - | chr4.4:29060865-29060884 | None:intergenic | 20.0% |
| !!! | TATGTATCCAAGAAAATTTT+AGG | + | chr4.4:29059895-29059914 | MS.gene059428:intron | 20.0% |
| !!! | TTAATTAAATGTATTGGCAA+AGG | + | chr4.4:29060532-29060551 | MS.gene059428:intron | 20.0% |
| !!! | TTTTAGATAGTCTTTATTTG+TGG | - | chr4.4:29060248-29060267 | None:intergenic | 20.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | - | chr4.4:29060651-29060670 | None:intergenic | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | + | chr4.4:29061392-29061411 | MS.gene059428:intron | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | + | chr4.4:29061808-29061827 | MS.gene059428:CDS | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | - | chr4.4:29060851-29060870 | None:intergenic | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | + | chr4.4:29061809-29061828 | MS.gene059428:CDS | 25.0% |
| ! | ATATAAGAAAGTCATAGGTA+CGG | - | chr4.4:29060455-29060474 | None:intergenic | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | - | chr4.4:29061658-29061677 | None:intergenic | 25.0% |
| ! | CAAAAAATGTCCATTTCAAA+TGG | - | chr4.4:29060482-29060501 | None:intergenic | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | + | chr4.4:29061897-29061916 | MS.gene059428:CDS | 25.0% |
| ! | GTTTCTTTAGATTCTTCTTA+GGG | + | chr4.4:29059206-29059225 | MS.gene059428:CDS | 25.0% |
| ! | TAAATTAGAATCGACAAAGT+TGG | - | chr4.4:29061183-29061202 | None:intergenic | 25.0% |
| ! | TACCTATGACTTTCTTATAT+GGG | + | chr4.4:29060455-29060474 | MS.gene059428:intron | 25.0% |
| ! | TATCCGTTAACAAGATATTT+AGG | - | chr4.4:29059996-29060015 | None:intergenic | 25.0% |
| !! | AAGGCTGATTTAATTTAAAG+CGG | + | chr4.4:29060885-29060904 | MS.gene059428:intron | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | + | chr4.4:29061361-29061380 | MS.gene059428:intron | 25.0% |
| !! | TTGGTATCCTAAAATTTTCT+TGG | - | chr4.4:29059905-29059924 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | + | chr4.4:29060675-29060694 | MS.gene059428:intron | 25.0% |
| !!! | CATTTGAAATGGACATTTTT+TGG | + | chr4.4:29060480-29060499 | MS.gene059428:intron | 25.0% |
| !!! | TTCTTTTTGGTGTATTACTT+GGG | - | chr4.4:29059657-29059676 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTGGTGTATTACT+TGG | - | chr4.4:29059658-29059677 | None:intergenic | 25.0% |
| AAAGAAGGAATGGAATAGAA+AGG | + | chr4.4:29060690-29060709 | MS.gene059428:intron | 30.0% | |
| AACACAATACTACCATTTCA+AGG | + | chr4.4:29058865-29058884 | MS.gene059428:CDS | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | - | chr4.4:29061554-29061573 | None:intergenic | 30.0% | |
| AGAATTCTCTTGAAAGAAGA+GGG | - | chr4.4:29061553-29061572 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | - | chr4.4:29059266-29059285 | None:intergenic | 30.0% | |
| CAACCAAACTTCAGATATAT+GGG | - | chr4.4:29059700-29059719 | None:intergenic | 30.0% | |
| CTAAATTCGAACTCGTATTA+AGG | + | chr4.4:29061069-29061088 | MS.gene059428:intron | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | - | chr4.4:29059253-29059272 | None:intergenic | 30.0% | |
| GAGCCTAAATATCTTGTTAA+CGG | + | chr4.4:29059990-29060009 | MS.gene059428:intron | 30.0% | |
| GGAGAAAATCATGATAACAA+AGG | + | chr4.4:29061896-29061915 | MS.gene059428:CDS | 30.0% | |
| GGTTTCTTTAGATTCTTCTT+AGG | + | chr4.4:29059205-29059224 | MS.gene059428:CDS | 30.0% | |
| GTACCTATGACTTTCTTATA+TGG | + | chr4.4:29060454-29060473 | MS.gene059428:intron | 30.0% | |
| TCAACCAAACTTCAGATATA+TGG | - | chr4.4:29059701-29059720 | None:intergenic | 30.0% | |
| TGAAGAAAAAACCCATCATT+TGG | - | chr4.4:29061823-29061842 | None:intergenic | 30.0% | |
| TGGTATCAATGAAGTTTGAT+GGG | - | chr4.4:29059760-29059779 | None:intergenic | 30.0% | |
| TTAAATATGCGAAGTAGAGA+GGG | - | chr4.4:29059537-29059556 | None:intergenic | 30.0% | |
| TTATATGGGTCCATTTGAAA+TGG | + | chr4.4:29060469-29060488 | MS.gene059428:intron | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | + | chr4.4:29061555-29061574 | MS.gene059428:CDS | 30.0% | |
| TTGAAAACCTTATCTGAATC+TGG | + | chr4.4:29061276-29061295 | MS.gene059428:intron | 30.0% | |
| TTTGCTAATAAAAGGACAAG+AGG | + | chr4.4:29059277-29059296 | MS.gene059428:CDS | 30.0% | |
| ! | AGGCTGATTTAATTTAAAGC+GGG | + | chr4.4:29060886-29060905 | MS.gene059428:intron | 30.0% |
| ! | GCTTGTTAGCATCAATAATA+AGG | - | chr4.4:29059125-29059144 | None:intergenic | 30.0% |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | + | chr4.4:29061941-29061960 | MS.gene059428:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | - | chr4.4:29061894-29061913 | None:intergenic | 30.0% |
| ! | TTTTTCACCAAGGAAACTAT+GGG | + | chr4.4:29062196-29062215 | MS.gene059428:CDS | 30.0% |
| ! | TTTTTGCATGTTCTGCTAAT+TGG | + | chr4.4:29061594-29061613 | MS.gene059428:CDS | 30.0% |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | + | chr4.4:29059269-29059288 | MS.gene059428:CDS | 30.0% |
| !! | TTTCACTTTGGAATAGAACT+TGG | - | chr4.4:29061646-29061665 | None:intergenic | 30.0% |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | + | chr4.4:29061823-29061842 | MS.gene059428:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | + | chr4.4:29061846-29061865 | MS.gene059428:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | + | chr4.4:29062186-29062205 | MS.gene059428:CDS | 30.0% |
| !!! | TGTTTTAGTCAAAGAAGGAA+TGG | + | chr4.4:29060680-29060699 | MS.gene059428:intron | 30.0% |
| AAAGCCTCACTTATCATACT+TGG | + | chr4.4:29062139-29062158 | MS.gene059428:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | + | chr4.4:29061914-29061933 | MS.gene059428:CDS | 35.0% | |
| ACATTATCTTGTTACTAGGG+AGG | + | chr4.4:29060964-29060983 | MS.gene059428:intron | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | - | chr4.4:29061505-29061524 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+CGG | + | chr4.4:29060744-29060763 | MS.gene059428:intron | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | + | chr4.4:29062020-29062039 | MS.gene059428:CDS | 35.0% | |
| CAATAATAAGTCAATGCAGC+TGG | - | chr4.4:29059475-29059494 | None:intergenic | 35.0% | |
| CAATGTCGATATTGTTAGGT+TGG | - | chr4.4:29061098-29061117 | None:intergenic | 35.0% | |
| CACAAAAAATGAACGAACAG+TGG | - | chr4.4:29059780-29059799 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | + | chr4.4:29061421-29061440 | MS.gene059428:intron | 35.0% | |
| CGTGTTAATTTACCTACCTT+TGG | + | chr4.4:29059956-29059975 | MS.gene059428:intron | 35.0% | |
| CTGACAATGTCGATATTGTT+AGG | - | chr4.4:29061102-29061121 | None:intergenic | 35.0% | |
| GAATTCAGTTGATCATCTTG+TGG | + | chr4.4:29061210-29061229 | MS.gene059428:intron | 35.0% | |
| GACCCATATAAGAAAGTCAT+AGG | - | chr4.4:29060460-29060479 | None:intergenic | 35.0% | |
| GGTAGGTAAATTAACACGAT+AGG | - | chr4.4:29059954-29059973 | None:intergenic | 35.0% | |
| GTGGTATCAATGAAGTTTGA+TGG | - | chr4.4:29059761-29059780 | None:intergenic | 35.0% | |
| GTTAAATATGCGAAGTAGAG+AGG | - | chr4.4:29059538-29059557 | None:intergenic | 35.0% | |
| TAAATATGCGAAGTAGAGAG+GGG | - | chr4.4:29059536-29059555 | None:intergenic | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | - | chr4.4:29061304-29061323 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | + | chr4.4:29061875-29061894 | MS.gene059428:CDS | 35.0% | |
| TCAACATGTCATGGTATTTC+TGG | + | chr4.4:29062019-29062038 | MS.gene059428:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | + | chr4.4:29061904-29061923 | MS.gene059428:CDS | 35.0% | |
| TGGATCTGTTGGATTTCTTT+GGG | + | chr4.4:29062069-29062088 | MS.gene059428:CDS | 35.0% | |
| TTGGATCTGTTGGATTTCTT+TGG | + | chr4.4:29062068-29062087 | MS.gene059428:CDS | 35.0% | |
| TTGGTCCAATGAGAGTAATA+GGG | - | chr4.4:29061875-29061894 | None:intergenic | 35.0% | |
| TTTAGATTCTTCTTAGGGCT+TGG | + | chr4.4:29059211-29059230 | MS.gene059428:CDS | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | - | chr4.4:29061876-29061895 | None:intergenic | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | + | chr4.4:29062021-29062040 | MS.gene059428:CDS | 35.0% |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | - | chr4.4:29061968-29061987 | None:intergenic | 35.0% |
| ! | ACACCCATATATCTGAAGTT+TGG | + | chr4.4:29059694-29059713 | MS.gene059428:intron | 35.0% |
| ! | AGCTCTCTTTGTTGTACATA+TGG | - | chr4.4:29059167-29059186 | None:intergenic | 35.0% |
| ! | CTGATTTAATTTAAAGCGGG+TGG | + | chr4.4:29060889-29060908 | MS.gene059428:intron | 35.0% |
| ! | CTTCAGATATATGGGTGTTT+TGG | - | chr4.4:29059692-29059711 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | + | chr4.4:29059184-29059203 | MS.gene059428:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | + | chr4.4:29059324-29059343 | MS.gene059428:CDS | 35.0% |
| ! | TCTTGTTAACGGATACTCAA+TGG | + | chr4.4:29060001-29060020 | MS.gene059428:intron | 35.0% |
| !! | CAGCTGCATTGACTTATTAT+TGG | + | chr4.4:29059473-29059492 | MS.gene059428:CDS | 35.0% |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | - | chr4.4:29061682-29061701 | None:intergenic | 35.0% |
| !! | CTTTTTCACCAAGGAAACTA+TGG | + | chr4.4:29062195-29062214 | MS.gene059428:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | + | chr4.4:29059442-29059461 | MS.gene059428:CDS | 35.0% |
| !!! | CTGTTCGTTCATTTTTTGTG+TGG | + | chr4.4:29059780-29059799 | MS.gene059428:intron | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | + | chr4.4:29061845-29061864 | MS.gene059428:CDS | 35.0% |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | + | chr4.4:29059316-29059335 | MS.gene059428:CDS | 35.0% |
| !!! | TTTTTTGTCCGTAAACGAAG+TGG | + | chr4.4:29061008-29061027 | MS.gene059428:intron | 35.0% |
| AAGAGGTTCTTTCATAGCTG+CGG | + | chr4.4:29059294-29059313 | MS.gene059428:CDS | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | + | chr4.4:29058944-29058963 | MS.gene059428:CDS | 40.0% | |
| AGTGGAACCAGATTCAGATA+AGG | - | chr4.4:29061286-29061305 | None:intergenic | 40.0% | |
| CATCTTTGTGATGAGTGTGA+TGG | - | chr4.4:29058942-29058961 | None:intergenic | 40.0% | |
| CCTCACTTATCATACTTGGA+GGG | + | chr4.4:29062143-29062162 | MS.gene059428:CDS | 40.0% | |
| CGACATTAGAAACCAAAGGT+AGG | - | chr4.4:29059971-29059990 | None:intergenic | 40.0% | |
| CGTGTTTACCACTTCGTTTA+CGG | - | chr4.4:29061019-29061038 | None:intergenic | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | + | chr4.4:29062144-29062163 | MS.gene059428:CDS | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | + | chr4.4:29061867-29061886 | MS.gene059428:CDS | 40.0% | |
| TAGTGCAACTGTTACTATGG+TGG | + | chr4.4:29059348-29059367 | MS.gene059428:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGCA+TGG | + | chr4.4:29062094-29062113 | MS.gene059428:CDS | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | + | chr4.4:29061694-29061713 | MS.gene059428:CDS | 40.0% | |
| TTCTCTTGAAAGAAGAGGGT+AGG | - | chr4.4:29061549-29061568 | None:intergenic | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | + | chr4.4:29059217-29059236 | MS.gene059428:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | + | chr4.4:29062087-29062106 | MS.gene059428:CDS | 40.0% | |
| ! | AAGGAGCATGGATATCCTAA+GGG | + | chr4.4:29062106-29062125 | MS.gene059428:CDS | 40.0% |
| ! | AAGGTCTTTGGAAGAGAATG+AGG | + | chr4.4:29062219-29062238 | MS.gene059428:CDS | 40.0% |
| !! | ATTGTGTTTTTGCCGAGTCA+AGG | - | chr4.4:29058853-29058872 | None:intergenic | 40.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | - | chr4.4:29058880-29058899 | None:intergenic | 40.0% |
| !! | TGGTGGTAATGGATTCTCTT+CGG | - | chr4.4:29061513-29061532 | None:intergenic | 40.0% |
| !! | TGTTACTATGGTGGTTTGCT+TGG | + | chr4.4:29059357-29059376 | MS.gene059428:CDS | 40.0% |
| !! | TTGTGTTTTTGCCGAGTCAA+GGG | - | chr4.4:29058852-29058871 | None:intergenic | 40.0% |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | + | chr4.4:29059311-29059330 | MS.gene059428:CDS | 40.0% |
| AACTCTTTCCAGCTAGGTTC+AGG | + | chr4.4:29061996-29062015 | MS.gene059428:CDS | 45.0% | |
| AACTTAAACCGCATGACGCA+AGG | - | chr4.4:29060755-29060774 | None:intergenic | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | - | chr4.4:29060718-29060737 | None:intergenic | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | - | chr4.4:29059511-29059530 | None:intergenic | 45.0% | |
| AGAAATCCGTCAAGTCAACC+CGG | + | chr4.4:29058991-29059010 | MS.gene059428:CDS | 45.0% | |
| AGACCTTCCCATAGTTTCCT+TGG | - | chr4.4:29062206-29062225 | None:intergenic | 45.0% | |
| AGAGAATTCTTGTGGCGACA+CGG | + | chr4.4:29061563-29061582 | MS.gene059428:CDS | 45.0% | |
| AGCAAACAGCAAGAATGGCT+TGG | - | chr4.4:29061739-29061758 | None:intergenic | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | + | chr4.4:29062010-29062029 | MS.gene059428:CDS | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | + | chr4.4:29060704-29060723 | MS.gene059428:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | + | chr4.4:29060625-29060644 | MS.gene059428:intron | 45.0% | |
| CATGGATATCCTAAGGGGAT+TGG | + | chr4.4:29062112-29062131 | MS.gene059428:CDS | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | - | chr4.4:29062146-29062165 | None:intergenic | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | + | chr4.4:29061405-29061424 | MS.gene059428:intron | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | - | chr4.4:29061981-29062000 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | - | chr4.4:29060722-29060741 | None:intergenic | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | + | chr4.4:29058887-29058906 | MS.gene059428:CDS | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | + | chr4.4:29062142-29062161 | MS.gene059428:CDS | 45.0% | |
| GCTTTCATTCCAATCCCCTT+AGG | - | chr4.4:29062124-29062143 | None:intergenic | 45.0% | |
| GGAAACTATGGGAAGGTCTT+TGG | + | chr4.4:29062207-29062226 | MS.gene059428:CDS | 45.0% | |
| GGCTAGTGCAACTGTTACTA+TGG | + | chr4.4:29059345-29059364 | MS.gene059428:CDS | 45.0% | |
| GGCTCGACATTAGAAACCAA+AGG | - | chr4.4:29059975-29059994 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | - | chr4.4:29061744-29061763 | None:intergenic | 45.0% | |
| GGTGCAATCATTGGATCTGT+TGG | + | chr4.4:29062058-29062077 | MS.gene059428:CDS | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | + | chr4.4:29061454-29061473 | MS.gene059428:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | + | chr4.4:29059370-29059389 | MS.gene059428:CDS | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | - | chr4.4:29061786-29061805 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | - | chr4.4:29061991-29062010 | None:intergenic | 45.0% | |
| TCACCAAGGAAACTATGGGA+AGG | + | chr4.4:29062200-29062219 | MS.gene059428:CDS | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | + | chr4.4:29060624-29060643 | MS.gene059428:intron | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | - | chr4.4:29058891-29058910 | None:intergenic | 45.0% | |
| TCGACATTGTCAGTTGCGTT+AGG | + | chr4.4:29061109-29061128 | MS.gene059428:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | - | chr4.4:29060639-29060658 | None:intergenic | 45.0% | |
| TTCAAGGCCATCATCATAGC+AGG | + | chr4.4:29058881-29058900 | MS.gene059428:CDS | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | - | chr4.4:29061978-29061997 | None:intergenic | 45.0% | |
| TTCTTAGGGCTTGGAATTGG+TGG | + | chr4.4:29059220-29059239 | MS.gene059428:CDS | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | - | chr4.4:29061712-29061731 | None:intergenic | 45.0% | |
| ! | AGGAGCATGGATATCCTAAG+GGG | + | chr4.4:29062107-29062126 | MS.gene059428:CDS | 45.0% |
| ! | ATTTAAAGCGGGTGGAAGTG+AGG | + | chr4.4:29060897-29060916 | MS.gene059428:intron | 45.0% |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | + | chr4.4:29059136-29059155 | MS.gene059428:CDS | 45.0% |
| ! | GAAGGAGCATGGATATCCTA+AGG | + | chr4.4:29062105-29062124 | MS.gene059428:CDS | 45.0% |
| ! | TGATGAGTGTGATGGAGAAG+AGG | - | chr4.4:29058934-29058953 | None:intergenic | 45.0% |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | - | chr4.4:29061724-29061743 | None:intergenic | 45.0% |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | - | chr4.4:29061524-29061543 | None:intergenic | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | + | chr4.4:29062049-29062068 | MS.gene059428:CDS | 45.0% |
| !! | GGTTGACTTGACGGATTTCT+TGG | - | chr4.4:29058991-29059010 | None:intergenic | 45.0% |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | + | chr4.4:29062033-29062052 | MS.gene059428:CDS | 45.0% |
| !! | TGACTTGACGGATTTCTTGG+TGG | - | chr4.4:29058988-29059007 | None:intergenic | 45.0% |
| !! | TTGACGGATTTCTTGGTGGT+CGG | - | chr4.4:29058984-29059003 | None:intergenic | 45.0% |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | + | chr4.4:29059310-29059329 | MS.gene059428:CDS | 45.0% |
| AAGAGGGTAGGCAGCATTTG+TGG | - | chr4.4:29061537-29061556 | None:intergenic | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | - | chr4.4:29059108-29059127 | None:intergenic | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | + | chr4.4:29061990-29062009 | MS.gene059428:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | - | chr4.4:29062007-29062026 | None:intergenic | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | - | chr4.4:29061992-29062011 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | + | chr4.4:29061749-29061768 | MS.gene059428:CDS | 50.0% | |
| GGCCATCATCATAGCAGGAA+TGG | + | chr4.4:29058886-29058905 | MS.gene059428:CDS | 50.0% | |
| GGTTCTATCAGCCCTTGACT+CGG | + | chr4.4:29058838-29058857 | MS.gene059428:CDS | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | - | chr4.4:29061771-29061790 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | + | chr4.4:29061785-29061804 | MS.gene059428:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | - | chr4.4:29061770-29061789 | None:intergenic | 50.0% | |
| TAGGCAGCATTTGTGGTTGG+TGG | - | chr4.4:29061530-29061549 | None:intergenic | 50.0% | |
| ! | TGATGATGCCAGAAACTGCC+AGG | + | chr4.4:29059500-29059519 | MS.gene059428:CDS | 50.0% |
| !! | CATGGTATTTCTGGGGCTGT+TGG | + | chr4.4:29062028-29062047 | MS.gene059428:CDS | 50.0% |
| ATTTCGCAGCGGTTCGAAGC+CGG | + | chr4.4:29059381-29059400 | MS.gene059428:CDS | 55.0% | |
| CAACTCCTATTCGGACGCCT+CGG | + | chr4.4:29059064-29059083 | MS.gene059428:CDS | 55.0% | |
| GAATAGGAGTTGGCCGAAGG+CGG | - | chr4.4:29059056-29059075 | None:intergenic | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | - | chr4.4:29059521-29059540 | None:intergenic | 55.0% | |
| GCCTTCGGCCAACTCCTATT+CGG | + | chr4.4:29059055-29059074 | MS.gene059428:CDS | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | - | chr4.4:29061533-29061552 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | - | chr4.4:29061765-29061784 | None:intergenic | 55.0% | |
| TCCGAATAGGAGTTGGCCGA+AGG | - | chr4.4:29059059-29059078 | None:intergenic | 55.0% | |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | + | chr4.4:29062156-29062175 | MS.gene059428:CDS | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | + | chr4.4:29062157-29062176 | MS.gene059428:CDS | 55.0% |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | + | chr4.4:29062037-29062056 | MS.gene059428:CDS | 55.0% |
| !! | CAACGACCGGGTTGACTTGA+CGG | - | chr4.4:29059000-29059019 | None:intergenic | 55.0% |
| ACGAGGGCTGAGACAACGAC+CGG | - | chr4.4:29059013-29059032 | None:intergenic | 60.0% | |
| CTCCATGCAACGTCAGCCTC+CGG | - | chr4.4:29059427-29059446 | None:intergenic | 60.0% | |
| GCACTCCTAGGAACCGCCTT+CGG | + | chr4.4:29059040-29059059 | MS.gene059428:CDS | 60.0% | |
| GCCTCGGAGACCTAAAAGGC+CGG | + | chr4.4:29059080-29059099 | MS.gene059428:CDS | 60.0% | |
| GGACGCCTCGGAGACCTAAA+AGG | + | chr4.4:29059076-29059095 | MS.gene059428:CDS | 60.0% | |
| GGCACATCAAAAGCCGTCGC+CGG | - | chr4.4:29059403-29059422 | None:intergenic | 60.0% | |
| ! | CGAGGCGTCCGAATAGGAGT+TGG | - | chr4.4:29059066-29059085 | None:intergenic | 60.0% |
| ! | GACGGCTTTTGATGTGCCGC+CGG | + | chr4.4:29059405-29059424 | MS.gene059428:CDS | 60.0% |
| ! | TAGGAGTGCGACGGAGACGA+GGG | - | chr4.4:29059029-29059048 | None:intergenic | 60.0% |
| AAAGGCCGGCGCCACGTCTA+CGG | + | chr4.4:29059094-29059113 | MS.gene059428:CDS | 65.0% | |
| CATGCAACGTCAGCCTCCGG+CGG | - | chr4.4:29059424-29059443 | None:intergenic | 65.0% | |
| CGAGGGCTGAGACAACGACC+GGG | - | chr4.4:29059012-29059031 | None:intergenic | 65.0% | |
| CGATACCGTAGACGTGGCGC+CGG | - | chr4.4:29059102-29059121 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | + | chr4.4:29059425-29059444 | MS.gene059428:CDS | 65.0% | |
| CTCGTCTCCGTCGCACTCCT+AGG | + | chr4.4:29059028-29059047 | MS.gene059428:CDS | 65.0% | |
| GTTGGCCGAAGGCGGTTCCT+AGG | - | chr4.4:29059048-29059067 | None:intergenic | 65.0% | |
| ! | CTAGGAGTGCGACGGAGACG+AGG | - | chr4.4:29059030-29059049 | None:intergenic | 65.0% |
| ! | GGCGGTTCCTAGGAGTGCGA+CGG | - | chr4.4:29059038-29059057 | None:intergenic | 65.0% |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | + | chr4.4:29059408-29059427 | MS.gene059428:CDS | 65.0% |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | - | chr4.4:29059072-29059091 | None:intergenic | 65.0% |
| !! | GCCGGCCTTTTAGGTCTCCG+AGG | - | chr4.4:29059084-29059103 | None:intergenic | 65.0% |
| !!! | AGACGTGGCGCCGGCCTTTT+AGG | - | chr4.4:29059093-29059112 | None:intergenic | 65.0% |
| CAGCGGTTCGAAGCCGGCGA+CGG | + | chr4.4:29059387-29059406 | MS.gene059428:CDS | 70.0% | |
| CGCCGGAGGCTGACGTTGCA+TGG | + | chr4.4:29059422-29059441 | MS.gene059428:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29058821 | 29062282 | 29058821 | ID=MS.gene059428 |
| chr4.4 | mRNA | 29058821 | 29062282 | 29058821 | ID=MS.gene059428.t1;Parent=MS.gene059428 |
| chr4.4 | exon | 29058821 | 29059521 | 29058821 | ID=MS.gene059428.t1.exon1;Parent=MS.gene059428.t1 |
| chr4.4 | CDS | 29058821 | 29059521 | 29058821 | ID=cds.MS.gene059428.t1;Parent=MS.gene059428.t1 |
| chr4.4 | exon | 29061427 | 29062282 | 29061427 | ID=MS.gene059428.t1.exon2;Parent=MS.gene059428.t1 |
| chr4.4 | CDS | 29061427 | 29062282 | 29061427 | ID=cds.MS.gene059428.t1;Parent=MS.gene059428.t1 |
| Gene Sequence |
| Protein sequence |
