Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006892.t1 | XP_003607875.1 | 99 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 5.60E-293 | 1016.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006892.t1 | Q9S735 | 64.1 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 1.8e-183 | 643.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006892.t1 | A2Q296 | 99.0 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 4.0e-293 | 1016.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020365 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene020517 | PPI |
| MS.gene006892 | MS.gene052675 | PPI |
| MS.gene015655 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene052677 | PPI |
| MS.gene006892 | MS.gene25185 | PPI |
| MS.gene059428 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene020364 | PPI |
| MS.gene006892 | MS.gene97006 | PPI |
| MS.gene067063 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene98973 | PPI |
| MS.gene006892 | MS.gene97007 | PPI |
| MS.gene052674 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene018707 | PPI |
| MS.gene006892 | MS.gene83067 | PPI |
| MS.gene006892 | MS.gene018708 | PPI |
| MS.gene006892 | MS.gene067567 | PPI |
| MS.gene62686 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene026529 | PPI |
| MS.gene56432 | MS.gene006892 | PPI |
| MS.gene23489 | MS.gene006892 | PPI |
| MS.gene006892 | MS.gene23490 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006892.t1 | MTR_4g083960 | 99.035 | 518 | 5 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1060 |
| MS.gene006892.t1 | MTR_1g074930 | 55.075 | 532 | 215 | 10 | 1 | 513 | 1 | 527 | 0.0 | 548 |
| MS.gene006892.t1 | MTR_1g043200 | 54.253 | 529 | 222 | 9 | 1 | 514 | 1 | 524 | 0.0 | 536 |
| MS.gene006892.t1 | MTR_1g043220 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| MS.gene006892.t1 | MTR_1g043290 | 54.221 | 533 | 220 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| MS.gene006892.t1 | MTR_3g082700 | 55.426 | 516 | 210 | 11 | 1 | 501 | 1 | 511 | 0.0 | 533 |
| MS.gene006892.t1 | MTR_1g069935 | 53.179 | 519 | 223 | 10 | 3 | 508 | 4 | 515 | 0.0 | 528 |
| MS.gene006892.t1 | MTR_7g096870 | 52.751 | 527 | 229 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| MS.gene006892.t1 | MTR_7g096880 | 52.166 | 531 | 220 | 12 | 5 | 510 | 6 | 527 | 1.78e-177 | 510 |
| MS.gene006892.t1 | MTR_1g074940 | 52.941 | 510 | 212 | 10 | 5 | 501 | 6 | 500 | 2.39e-177 | 509 |
| MS.gene006892.t1 | MTR_1g069930 | 50.662 | 529 | 225 | 12 | 1 | 507 | 1 | 515 | 5.15e-172 | 496 |
| MS.gene006892.t1 | MTR_1g028600 | 49.615 | 520 | 238 | 11 | 4 | 513 | 2 | 507 | 2.93e-163 | 474 |
| MS.gene006892.t1 | MTR_5g068140 | 48.812 | 547 | 234 | 14 | 1 | 514 | 1 | 534 | 7.07e-157 | 458 |
| MS.gene006892.t1 | MTR_6g088450 | 24.951 | 513 | 306 | 17 | 12 | 500 | 45 | 502 | 9.97e-20 | 92.8 |
| MS.gene006892.t1 | MTR_3g084110 | 24.236 | 491 | 303 | 17 | 27 | 503 | 35 | 470 | 1.66e-18 | 89.0 |
| MS.gene006892.t1 | MTR_7g005910 | 22.088 | 498 | 310 | 17 | 26 | 505 | 39 | 476 | 4.49e-14 | 75.1 |
| MS.gene006892.t1 | MTR_1g116650 | 22.222 | 378 | 244 | 13 | 132 | 505 | 178 | 509 | 1.22e-12 | 70.5 |
| MS.gene006892.t1 | MTR_4g072030 | 21.503 | 479 | 288 | 15 | 61 | 505 | 60 | 484 | 6.88e-12 | 68.2 |
| MS.gene006892.t1 | MTR_1g116660 | 20.842 | 499 | 316 | 17 | 26 | 505 | 41 | 479 | 9.43e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006892.t1 | AT1G76430 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 674 |
| MS.gene006892.t1 | AT1G20860 | 63.218 | 522 | 176 | 7 | 5 | 517 | 55 | 569 | 0.0 | 663 |
| MS.gene006892.t1 | AT1G20860 | 63.218 | 522 | 176 | 7 | 5 | 517 | 3 | 517 | 0.0 | 662 |
| MS.gene006892.t1 | AT5G43350 | 53.992 | 526 | 218 | 11 | 5 | 513 | 6 | 524 | 0.0 | 539 |
| MS.gene006892.t1 | AT5G43360 | 54.247 | 518 | 215 | 11 | 5 | 507 | 6 | 516 | 0.0 | 533 |
| MS.gene006892.t1 | AT3G54700 | 53.728 | 523 | 219 | 11 | 5 | 513 | 6 | 519 | 0.0 | 529 |
| MS.gene006892.t1 | AT3G54700 | 53.728 | 523 | 219 | 11 | 5 | 513 | 6 | 519 | 0.0 | 529 |
| MS.gene006892.t1 | AT2G38940 | 54.231 | 520 | 214 | 13 | 1 | 503 | 1 | 513 | 0.0 | 526 |
| MS.gene006892.t1 | AT5G43370 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 3.69e-179 | 514 |
| MS.gene006892.t1 | AT5G43370 | 54.183 | 526 | 217 | 11 | 5 | 513 | 6 | 524 | 3.69e-179 | 514 |
| MS.gene006892.t1 | AT2G32830 | 51.509 | 530 | 231 | 11 | 3 | 513 | 4 | 526 | 8.21e-178 | 511 |
| MS.gene006892.t1 | AT5G43340 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 2.70e-171 | 494 |
| MS.gene006892.t1 | AT4G08878 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 1.89e-72 | 232 |
| MS.gene006892.t1 | AT4G08895 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 6.23e-27 | 106 |
| MS.gene006892.t1 | AT2G43330 | 22.081 | 394 | 253 | 10 | 132 | 512 | 131 | 483 | 9.63e-15 | 77.0 |
| MS.gene006892.t1 | AT3G18830 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 7.66e-12 | 68.2 |
Find 141 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4.2:+25970447 | MS.gene006892:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4.2:+25970525 | MS.gene006892:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4.2:-25970008 | None:intergenic |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4.2:-25968014 | None:intergenic |
| TTGGATCTGTTGGATTTCTT+TGG | 0.219700 | 4.2:+25970574 | MS.gene006892:CDS |
| GGTTTCTTTAGATTCTTCTT+AGG | 0.224645 | 4.2:+25967711 | MS.gene006892:CDS |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4.2:+25967775 | MS.gene006892:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4.2:-25970379 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4.2:+25967830 | MS.gene006892:CDS |
| GGTTGACTTGACGGATTTCT+TGG | 0.274248 | 4.2:-25967494 | None:intergenic |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4.2:+25967979 | MS.gene006892:CDS |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4.2:+25970255 | MS.gene006892:CDS |
| TGGATCTGTTGGATTTCTTT+GGG | 0.310383 | 4.2:+25970575 | MS.gene006892:CDS |
| GGAAACTATGGGAAGGTCTT+TGG | 0.311857 | 4.2:+25970713 | MS.gene006892:CDS |
| TTTAGATTCTTCTTAGGGCT+TGG | 0.319569 | 4.2:+25967717 | MS.gene006892:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4.2:+25967851 | MS.gene006892:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4.2:-25970027 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4.2:+25970502 | MS.gene006892:CDS |
| GTTTCTTTAGATTCTTCTTA+GGG | 0.354585 | 4.2:+25967712 | MS.gene006892:CDS |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4.2:-25967628 | None:intergenic |
| AGCTCTCTTTGTTGTACATA+TGG | 0.368396 | 4.2:-25967670 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4.2:+25970543 | MS.gene006892:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4.2:+25967582 | MS.gene006892:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4.2:+25970373 | MS.gene006892:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4.2:-25967756 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.379282 | 4.2:+25967723 | MS.gene006892:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4.2:+25967726 | MS.gene006892:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4.2:-25967769 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.396679 | 4.2:-25967575 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4.2:-25970471 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4.2:+25970410 | MS.gene006892:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4.2:+25967642 | MS.gene006892:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4.2:+25970526 | MS.gene006892:CDS |
| CAACGACCGGGTTGACTTGA+CGG | 0.415324 | 4.2:-25967503 | None:intergenic |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4.2:+25970420 | MS.gene006892:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4.2:+25967863 | MS.gene006892:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4.2:+25970555 | MS.gene006892:CDS |
| AGACCTTCCCATAGTTTCCT+TGG | 0.431457 | 4.2:-25970709 | None:intergenic |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4.2:+25970539 | MS.gene006892:CDS |
| GCCTTCGGCCAACTCCTATT+CGG | 0.447789 | 4.2:+25967561 | MS.gene006892:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4.2:+25970314 | MS.gene006892:CDS |
| GGTGCAATCATTGGATCTGT+TGG | 0.456131 | 4.2:+25970564 | MS.gene006892:CDS |
| GTTGGCCGAAGGCGGTTCCT+AGG | 0.459158 | 4.2:-25967551 | None:intergenic |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4.2:+25967928 | MS.gene006892:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4.2:+25967371 | MS.gene006892:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4.2:-25970016 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4.2:+25970496 | MS.gene006892:CDS |
| GCTTTCATTCCAATCCCCTT+AGG | 0.467608 | 4.2:-25970627 | None:intergenic |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4.2:-25967930 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4.2:-25970484 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4.2:-25970161 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4.2:+25970663 | MS.gene006892:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4.2:-25970057 | None:intergenic |
| CATGGATATCCTAAGGGGAT+TGG | 0.474356 | 4.2:+25970618 | MS.gene006892:CDS |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4.2:-25970510 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4.2:-25970495 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4.2:+25970645 | MS.gene006892:CDS |
| CTCGTCTCCGTCGCACTCCT+AGG | 0.482773 | 4.2:+25967534 | MS.gene006892:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4.2:-25970247 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4.2:-25967383 | None:intergenic |
| CAGCGGTTCGAAGCCGGCGA+CGG | 0.486295 | 4.2:+25967893 | MS.gene006892:CDS |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4.2:-25970149 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4.2:-25970040 | None:intergenic |
| GAAAATGGCAAGAGGGTTGA+AGG | 0.490649 | 4.2:+25967323 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4.2:+25969927 | MS.gene006892:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4.2:+25967948 | MS.gene006892:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4.2:+25970403 | MS.gene006892:CDS |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.495311 | 4.2:+25967887 | MS.gene006892:CDS |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4.2:-25970215 | None:intergenic |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4.2:+25970648 | MS.gene006892:CDS |
| TTGACGGATTTCTTGGTGGT+CGG | 0.509656 | 4.2:-25967487 | None:intergenic |
| GAAGGAGCATGGATATCCTA+AGG | 0.510884 | 4.2:+25970611 | MS.gene006892:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4.2:-25970227 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4.2:-25970378 | None:intergenic |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4.2:+25967393 | MS.gene006892:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4.2:+25970662 | MS.gene006892:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4.2:-25967394 | None:intergenic |
| CAAAATCCGAAAATGGCAAG+AGG | 0.521857 | 4.2:+25967315 | None:intergenic |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4.2:+25967392 | MS.gene006892:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4.2:+25970315 | MS.gene006892:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4.2:+25970061 | MS.gene006892:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4.2:-25970033 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4.2:-25970242 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4.2:+25970534 | MS.gene006892:CDS |
| GGCACATCAAAAGCCGTCGC+CGG | 0.533734 | 4.2:-25967906 | None:intergenic |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4.2:+25967387 | MS.gene006892:CDS |
| TGACTTGACGGATTTCTTGG+TGG | 0.538931 | 4.2:-25967491 | None:intergenic |
| ACGAGGGCTGAGACAACGAC+CGG | 0.541196 | 4.2:-25967516 | None:intergenic |
| GCACTCCTAGGAACCGCCTT+CGG | 0.541368 | 4.2:+25967546 | MS.gene006892:CDS |
| AAGGTCTTTGGAAGAGAATG+AGG | 0.545988 | 4.2:+25970725 | MS.gene006892:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4.2:+25968006 | MS.gene006892:CDS |
| AAAGGCCGGCGCCACGTCTA+CGG | 0.557844 | 4.2:+25967600 | MS.gene006892:CDS |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4.2:-25967978 | None:intergenic |
| CGAGGCGTCCGAATAGGAGT+TGG | 0.566689 | 4.2:-25967569 | None:intergenic |
| GCCTCGGAGACCTAAAAGGC+CGG | 0.568495 | 4.2:+25967586 | MS.gene006892:CDS |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4.2:-25970036 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4.2:+25967783 | MS.gene006892:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4.2:+25970402 | MS.gene006892:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4.2:-25970056 | None:intergenic |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4.2:+25970649 | MS.gene006892:CDS |
| AGAGAATTCTTGTGGCGACA+CGG | 0.577127 | 4.2:+25970069 | MS.gene006892:CDS |
| CAACTCCTATTCGGACGCCT+CGG | 0.577300 | 4.2:+25967570 | MS.gene006892:CDS |
| CGATACCGTAGACGTGGCGC+CGG | 0.577886 | 4.2:-25967605 | None:intergenic |
| AAGGAGCATGGATATCCTAA+GGG | 0.581879 | 4.2:+25970612 | MS.gene006892:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4.2:-25970268 | None:intergenic |
| TCCGAATAGGAGTTGGCCGA+AGG | 0.586471 | 4.2:-25967562 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4.2:-25970273 | None:intergenic |
| CTAGGAGTGCGACGGAGACG+AGG | 0.589067 | 4.2:-25967533 | None:intergenic |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4.2:+25970381 | MS.gene006892:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4.2:+25967450 | MS.gene006892:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4.2:+25967854 | MS.gene006892:CDS |
| TCACATAAAGAGAAGGAGCA+TGG | 0.593312 | 4.2:+25970600 | MS.gene006892:CDS |
| GGTTCTATCAGCCCTTGACT+CGG | 0.593955 | 4.2:+25967344 | MS.gene006892:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4.2:+25970593 | MS.gene006892:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4.2:-25970274 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4.2:+25970650 | MS.gene006892:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4.2:-25970052 | None:intergenic |
| TCACCAAGGAAACTATGGGA+AGG | 0.613776 | 4.2:+25970706 | MS.gene006892:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4.2:+25970516 | MS.gene006892:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4.2:-25967927 | None:intergenic |
| AAGAGGTTCTTTCATAGCTG+CGG | 0.616245 | 4.2:+25967800 | MS.gene006892:CDS |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4.2:-25967445 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4.2:+25970527 | MS.gene006892:CDS |
| GAATAGGAGTTGGCCGAAGG+CGG | 0.628666 | 4.2:-25967559 | None:intergenic |
| TGATGAGTGTGATGGAGAAG+AGG | 0.629463 | 4.2:-25967437 | None:intergenic |
| GGCGGTTCCTAGGAGTGCGA+CGG | 0.633327 | 4.2:-25967541 | None:intergenic |
| AAAATCCGAAAATGGCAAGA+GGG | 0.638563 | 4.2:+25967316 | None:intergenic |
| CGAGGGCTGAGACAACGACC+GGG | 0.642058 | 4.2:-25967515 | None:intergenic |
| TAGGAGTGCGACGGAGACGA+GGG | 0.643293 | 4.2:-25967532 | None:intergenic |
| AGAAATCCGTCAAGTCAACC+CGG | 0.643622 | 4.2:+25967497 | MS.gene006892:CDS |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4.2:+25970200 | MS.gene006892:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4.2:+25969960 | MS.gene006892:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4.2:-25970481 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4.2:-25970494 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4.2:-25970649 | None:intergenic |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4.2:-25970289 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4.2:+25967876 | MS.gene006892:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4.2:+25967931 | MS.gene006892:CDS |
| AGGAGCATGGATATCCTAAG+GGG | 0.695397 | 4.2:+25970613 | MS.gene006892:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4.2:-25967611 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4.2:+25970291 | MS.gene006892:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATTATATATAAAA+AGG | + | chr4.2:25968129-25968148 | MS.gene006892:intron | 0.0% |
| !! | AAATATATTATATATAAAAA+GGG | + | chr4.2:25968130-25968149 | MS.gene006892:intron | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | - | chr4.2:25968692-25968711 | None:intergenic | 0.0% |
| !! | TATAAAATTTAAATTCAACT+AGG | - | chr4.2:25969104-25969123 | None:intergenic | 10.0% |
| !! | TTAAATTCAAATGAAAATAA+TGG | + | chr4.2:25969013-25969032 | MS.gene006892:intron | 10.0% |
| !!! | TGGTTTTTTTTTTTTTTAAA+TGG | + | chr4.2:25968105-25968124 | MS.gene006892:intron | 10.0% |
| !! | AAAAAAAAAAAATGAACACT+TGG | - | chr4.2:25968430-25968449 | None:intergenic | 15.0% |
| !! | AACTTATTATCGAAATAAAT+TGG | - | chr4.2:25969660-25969679 | None:intergenic | 15.0% |
| !! | ACAAAATGCATTATTTAAAA+GGG | - | chr4.2:25968902-25968921 | None:intergenic | 15.0% |
| !! | ATTAAATATACTAAGTATAG+AGG | - | chr4.2:25968067-25968086 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | - | chr4.2:25969174-25969193 | None:intergenic | 15.0% |
| !! | TTAAATATACTAAGTATAGA+GGG | - | chr4.2:25968066-25968085 | None:intergenic | 15.0% |
| !!! | GTGTATTTTTATTTTCTTTT+TGG | - | chr4.2:25968176-25968195 | None:intergenic | 15.0% |
| !!! | TAAAGACTATCTAAAAATTT+TGG | + | chr4.2:25968758-25968777 | MS.gene006892:intron | 15.0% |
| !!! | TTCTAACTATTTTTAATGTT+CGG | - | chr4.2:25968612-25968631 | None:intergenic | 15.0% |
| !! | AAAATATATTGATGTCTTTG+TGG | - | chr4.2:25968791-25968810 | None:intergenic | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | + | chr4.2:25969466-25969485 | MS.gene006892:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | + | chr4.2:25969467-25969486 | MS.gene006892:intron | 20.0% |
| !! | ATGGCATTAATTAAATGTAT+TGG | + | chr4.2:25969032-25969051 | MS.gene006892:intron | 20.0% |
| !! | CACAAAATGCATTATTTAAA+AGG | - | chr4.2:25968903-25968922 | None:intergenic | 20.0% |
| !! | TAATTAGTATAGAAAATGCA+AGG | + | chr4.2:25969372-25969391 | MS.gene006892:intron | 20.0% |
| !! | TTACGGACAAAAAAAAAAAT+TGG | - | chr4.2:25969508-25969527 | None:intergenic | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | - | chr4.2:25969818-25969837 | None:intergenic | 20.0% |
| !!! | ATTCTTAAATATCTGAAGTT+TGG | + | chr4.2:25968085-25968104 | MS.gene006892:intron | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | - | chr4.2:25969371-25969390 | None:intergenic | 20.0% |
| !!! | TATGTATCCAAGAAAATTTT+AGG | + | chr4.2:25968401-25968420 | MS.gene006892:intron | 20.0% |
| !!! | TTAATTAAATGTATTGGCAA+AGG | + | chr4.2:25969038-25969057 | MS.gene006892:intron | 20.0% |
| !!! | TTTTAGATAGTCTTTATTTG+TGG | - | chr4.2:25968754-25968773 | None:intergenic | 20.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | - | chr4.2:25969157-25969176 | None:intergenic | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | + | chr4.2:25969898-25969917 | MS.gene006892:intron | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | + | chr4.2:25970314-25970333 | MS.gene006892:CDS | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | - | chr4.2:25969357-25969376 | None:intergenic | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | + | chr4.2:25970315-25970334 | MS.gene006892:CDS | 25.0% |
| ! | ATATAAGAAAGTCATAGGTA+CGG | - | chr4.2:25968961-25968980 | None:intergenic | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | - | chr4.2:25970164-25970183 | None:intergenic | 25.0% |
| ! | CAAAAAATGTCCATTTCAAA+TGG | - | chr4.2:25968988-25969007 | None:intergenic | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | + | chr4.2:25970403-25970422 | MS.gene006892:CDS | 25.0% |
| ! | GTTTCTTTAGATTCTTCTTA+GGG | + | chr4.2:25967712-25967731 | MS.gene006892:CDS | 25.0% |
| ! | TAAATTAGAATCGACAAAGT+TGG | - | chr4.2:25969689-25969708 | None:intergenic | 25.0% |
| ! | TACCTATGACTTTCTTATAT+GGG | + | chr4.2:25968961-25968980 | MS.gene006892:intron | 25.0% |
| ! | TATCCGTTAACAAGATATTT+AGG | - | chr4.2:25968502-25968521 | None:intergenic | 25.0% |
| !! | AAGGCTGATTTAATTTAAAG+CGG | + | chr4.2:25969391-25969410 | MS.gene006892:intron | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | + | chr4.2:25969867-25969886 | MS.gene006892:intron | 25.0% |
| !! | TTGGTATCCTAAAATTTTCT+TGG | - | chr4.2:25968411-25968430 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | + | chr4.2:25969181-25969200 | MS.gene006892:intron | 25.0% |
| !!! | CATTTGAAATGGACATTTTT+TGG | + | chr4.2:25968986-25969005 | MS.gene006892:intron | 25.0% |
| !!! | TTCTTTTTGGTGTATTACTT+GGG | - | chr4.2:25968163-25968182 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTGGTGTATTACT+TGG | - | chr4.2:25968164-25968183 | None:intergenic | 25.0% |
| AAAGAAGGAATGGAATAGAA+AGG | + | chr4.2:25969196-25969215 | MS.gene006892:intron | 30.0% | |
| AACACAATACTACCATTTCA+AGG | + | chr4.2:25967371-25967390 | MS.gene006892:CDS | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | - | chr4.2:25970060-25970079 | None:intergenic | 30.0% | |
| AGAATTCTCTTGAAAGAAGA+GGG | - | chr4.2:25970059-25970078 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | - | chr4.2:25967772-25967791 | None:intergenic | 30.0% | |
| CAACCAAACTTCAGATATAT+GGG | - | chr4.2:25968206-25968225 | None:intergenic | 30.0% | |
| CTAAATTCGAACTCGTATTA+AGG | + | chr4.2:25969575-25969594 | MS.gene006892:intron | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | - | chr4.2:25967759-25967778 | None:intergenic | 30.0% | |
| GAGCCTAAATATCTTGTTAA+CGG | + | chr4.2:25968496-25968515 | MS.gene006892:intron | 30.0% | |
| GGAGAAAATCATGATAACAA+AGG | + | chr4.2:25970402-25970421 | MS.gene006892:CDS | 30.0% | |
| GGTTTCTTTAGATTCTTCTT+AGG | + | chr4.2:25967711-25967730 | MS.gene006892:CDS | 30.0% | |
| GTACCTATGACTTTCTTATA+TGG | + | chr4.2:25968960-25968979 | MS.gene006892:intron | 30.0% | |
| TCAACCAAACTTCAGATATA+TGG | - | chr4.2:25968207-25968226 | None:intergenic | 30.0% | |
| TGAAGAAAAAACCCATCATT+TGG | - | chr4.2:25970329-25970348 | None:intergenic | 30.0% | |
| TGGTATCAATGAAGTTTGAT+GGG | - | chr4.2:25968266-25968285 | None:intergenic | 30.0% | |
| TTAAATATGCGAAGTAGAGA+GGG | - | chr4.2:25968043-25968062 | None:intergenic | 30.0% | |
| TTATATGGGTCCATTTGAAA+TGG | + | chr4.2:25968975-25968994 | MS.gene006892:intron | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | + | chr4.2:25970061-25970080 | MS.gene006892:CDS | 30.0% | |
| TTGAAAACCTTATCTGAATC+TGG | + | chr4.2:25969782-25969801 | MS.gene006892:intron | 30.0% | |
| TTTGCTAATAAAAGGACAAG+AGG | + | chr4.2:25967783-25967802 | MS.gene006892:CDS | 30.0% | |
| ! | AGGCTGATTTAATTTAAAGC+GGG | + | chr4.2:25969392-25969411 | MS.gene006892:intron | 30.0% |
| ! | GCTTGTTAGCATCAATAATA+AGG | - | chr4.2:25967631-25967650 | None:intergenic | 30.0% |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | + | chr4.2:25970447-25970466 | MS.gene006892:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | - | chr4.2:25970400-25970419 | None:intergenic | 30.0% |
| ! | TTTTTCACCAAGGAAACTAT+GGG | + | chr4.2:25970702-25970721 | MS.gene006892:CDS | 30.0% |
| ! | TTTTTGCATGTTCTGCTAAT+TGG | + | chr4.2:25970100-25970119 | MS.gene006892:CDS | 30.0% |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | + | chr4.2:25967775-25967794 | MS.gene006892:CDS | 30.0% |
| !! | TTTCACTTTGGAATAGAACT+TGG | - | chr4.2:25970152-25970171 | None:intergenic | 30.0% |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | + | chr4.2:25970329-25970348 | MS.gene006892:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | + | chr4.2:25970352-25970371 | MS.gene006892:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | + | chr4.2:25970692-25970711 | MS.gene006892:CDS | 30.0% |
| !!! | TGTTTTAGTCAAAGAAGGAA+TGG | + | chr4.2:25969186-25969205 | MS.gene006892:intron | 30.0% |
| AAAGCCTCACTTATCATACT+TGG | + | chr4.2:25970645-25970664 | MS.gene006892:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | + | chr4.2:25970420-25970439 | MS.gene006892:CDS | 35.0% | |
| ACATTATCTTGTTACTAGGG+AGG | + | chr4.2:25969470-25969489 | MS.gene006892:intron | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | - | chr4.2:25970011-25970030 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+CGG | + | chr4.2:25969250-25969269 | MS.gene006892:intron | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | + | chr4.2:25970526-25970545 | MS.gene006892:CDS | 35.0% | |
| CAATAATAAGTCAATGCAGC+TGG | - | chr4.2:25967981-25968000 | None:intergenic | 35.0% | |
| CAATGTCGATATTGTTAGGT+TGG | - | chr4.2:25969604-25969623 | None:intergenic | 35.0% | |
| CACAAAAAATGAACGAACAG+TGG | - | chr4.2:25968286-25968305 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | + | chr4.2:25969927-25969946 | MS.gene006892:intron | 35.0% | |
| CGTGTTAATTTACCTACCTT+TGG | + | chr4.2:25968462-25968481 | MS.gene006892:intron | 35.0% | |
| CTGACAATGTCGATATTGTT+AGG | - | chr4.2:25969608-25969627 | None:intergenic | 35.0% | |
| GAATTCAGTTGATCATCTTG+TGG | + | chr4.2:25969716-25969735 | MS.gene006892:intron | 35.0% | |
| GACCCATATAAGAAAGTCAT+AGG | - | chr4.2:25968966-25968985 | None:intergenic | 35.0% | |
| GGTAGGTAAATTAACACGAT+AGG | - | chr4.2:25968460-25968479 | None:intergenic | 35.0% | |
| GTGGTATCAATGAAGTTTGA+TGG | - | chr4.2:25968267-25968286 | None:intergenic | 35.0% | |
| GTTAAATATGCGAAGTAGAG+AGG | - | chr4.2:25968044-25968063 | None:intergenic | 35.0% | |
| TAAATATGCGAAGTAGAGAG+GGG | - | chr4.2:25968042-25968061 | None:intergenic | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | - | chr4.2:25969810-25969829 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | + | chr4.2:25970381-25970400 | MS.gene006892:CDS | 35.0% | |
| TCAACATGTCATGGTATTTC+TGG | + | chr4.2:25970525-25970544 | MS.gene006892:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | + | chr4.2:25970410-25970429 | MS.gene006892:CDS | 35.0% | |
| TGGATCTGTTGGATTTCTTT+GGG | + | chr4.2:25970575-25970594 | MS.gene006892:CDS | 35.0% | |
| TTGGATCTGTTGGATTTCTT+TGG | + | chr4.2:25970574-25970593 | MS.gene006892:CDS | 35.0% | |
| TTGGTCCAATGAGAGTAATA+GGG | - | chr4.2:25970381-25970400 | None:intergenic | 35.0% | |
| TTTAGATTCTTCTTAGGGCT+TGG | + | chr4.2:25967717-25967736 | MS.gene006892:CDS | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | - | chr4.2:25970382-25970401 | None:intergenic | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | + | chr4.2:25970527-25970546 | MS.gene006892:CDS | 35.0% |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | - | chr4.2:25970474-25970493 | None:intergenic | 35.0% |
| ! | ACACCCATATATCTGAAGTT+TGG | + | chr4.2:25968200-25968219 | MS.gene006892:intron | 35.0% |
| ! | AGCTCTCTTTGTTGTACATA+TGG | - | chr4.2:25967673-25967692 | None:intergenic | 35.0% |
| ! | CTGATTTAATTTAAAGCGGG+TGG | + | chr4.2:25969395-25969414 | MS.gene006892:intron | 35.0% |
| ! | CTTCAGATATATGGGTGTTT+TGG | - | chr4.2:25968198-25968217 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | + | chr4.2:25967690-25967709 | MS.gene006892:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | + | chr4.2:25967830-25967849 | MS.gene006892:CDS | 35.0% |
| ! | TCTTGTTAACGGATACTCAA+TGG | + | chr4.2:25968507-25968526 | MS.gene006892:intron | 35.0% |
| !! | CAGCTGCATTGACTTATTAT+TGG | + | chr4.2:25967979-25967998 | MS.gene006892:CDS | 35.0% |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | - | chr4.2:25970188-25970207 | None:intergenic | 35.0% |
| !! | CTTTTTCACCAAGGAAACTA+TGG | + | chr4.2:25970701-25970720 | MS.gene006892:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | + | chr4.2:25967948-25967967 | MS.gene006892:CDS | 35.0% |
| !!! | CTGTTCGTTCATTTTTTGTG+TGG | + | chr4.2:25968286-25968305 | MS.gene006892:intron | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | + | chr4.2:25970351-25970370 | MS.gene006892:CDS | 35.0% |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | + | chr4.2:25967822-25967841 | MS.gene006892:CDS | 35.0% |
| !!! | TTTTTTGTCCGTAAACGAAG+TGG | + | chr4.2:25969514-25969533 | MS.gene006892:intron | 35.0% |
| AAGAGGTTCTTTCATAGCTG+CGG | + | chr4.2:25967800-25967819 | MS.gene006892:CDS | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | + | chr4.2:25967450-25967469 | MS.gene006892:CDS | 40.0% | |
| AGTGGAACCAGATTCAGATA+AGG | - | chr4.2:25969792-25969811 | None:intergenic | 40.0% | |
| CATCTTTGTGATGAGTGTGA+TGG | - | chr4.2:25967448-25967467 | None:intergenic | 40.0% | |
| CCTCACTTATCATACTTGGA+GGG | + | chr4.2:25970649-25970668 | MS.gene006892:CDS | 40.0% | |
| CGACATTAGAAACCAAAGGT+AGG | - | chr4.2:25968477-25968496 | None:intergenic | 40.0% | |
| CGTGTTTACCACTTCGTTTA+CGG | - | chr4.2:25969525-25969544 | None:intergenic | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | + | chr4.2:25970650-25970669 | MS.gene006892:CDS | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | + | chr4.2:25970373-25970392 | MS.gene006892:CDS | 40.0% | |
| TAGTGCAACTGTTACTATGG+TGG | + | chr4.2:25967854-25967873 | MS.gene006892:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGCA+TGG | + | chr4.2:25970600-25970619 | MS.gene006892:CDS | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | + | chr4.2:25970200-25970219 | MS.gene006892:CDS | 40.0% | |
| TTCTCTTGAAAGAAGAGGGT+AGG | - | chr4.2:25970055-25970074 | None:intergenic | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | + | chr4.2:25967723-25967742 | MS.gene006892:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | + | chr4.2:25970593-25970612 | MS.gene006892:CDS | 40.0% | |
| ! | AAGGAGCATGGATATCCTAA+GGG | + | chr4.2:25970612-25970631 | MS.gene006892:CDS | 40.0% |
| ! | AAGGTCTTTGGAAGAGAATG+AGG | + | chr4.2:25970725-25970744 | MS.gene006892:CDS | 40.0% |
| !! | ATTGTGTTTTTGCCGAGTCA+AGG | - | chr4.2:25967359-25967378 | None:intergenic | 40.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | - | chr4.2:25967386-25967405 | None:intergenic | 40.0% |
| !! | TGGTGGTAATGGATTCTCTT+CGG | - | chr4.2:25970019-25970038 | None:intergenic | 40.0% |
| !! | TGTTACTATGGTGGTTTGCT+TGG | + | chr4.2:25967863-25967882 | MS.gene006892:CDS | 40.0% |
| !! | TTGTGTTTTTGCCGAGTCAA+GGG | - | chr4.2:25967358-25967377 | None:intergenic | 40.0% |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | + | chr4.2:25967817-25967836 | MS.gene006892:CDS | 40.0% |
| AACTCTTTCCAGCTAGGTTC+AGG | + | chr4.2:25970502-25970521 | MS.gene006892:CDS | 45.0% | |
| AACTTAAACCGCATGACGCA+AGG | - | chr4.2:25969261-25969280 | None:intergenic | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | - | chr4.2:25969224-25969243 | None:intergenic | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | - | chr4.2:25968017-25968036 | None:intergenic | 45.0% | |
| AGAAATCCGTCAAGTCAACC+CGG | + | chr4.2:25967497-25967516 | MS.gene006892:CDS | 45.0% | |
| AGACCTTCCCATAGTTTCCT+TGG | - | chr4.2:25970712-25970731 | None:intergenic | 45.0% | |
| AGAGAATTCTTGTGGCGACA+CGG | + | chr4.2:25970069-25970088 | MS.gene006892:CDS | 45.0% | |
| AGCAAACAGCAAGAATGGCT+TGG | - | chr4.2:25970245-25970264 | None:intergenic | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | + | chr4.2:25970516-25970535 | MS.gene006892:CDS | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | + | chr4.2:25969210-25969229 | MS.gene006892:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | + | chr4.2:25969131-25969150 | MS.gene006892:intron | 45.0% | |
| CATGGATATCCTAAGGGGAT+TGG | + | chr4.2:25970618-25970637 | MS.gene006892:CDS | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | - | chr4.2:25970652-25970671 | None:intergenic | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | + | chr4.2:25969911-25969930 | MS.gene006892:intron | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | - | chr4.2:25970487-25970506 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | - | chr4.2:25969228-25969247 | None:intergenic | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | + | chr4.2:25967393-25967412 | MS.gene006892:CDS | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | + | chr4.2:25970648-25970667 | MS.gene006892:CDS | 45.0% | |
| GCTTTCATTCCAATCCCCTT+AGG | - | chr4.2:25970630-25970649 | None:intergenic | 45.0% | |
| GGAAACTATGGGAAGGTCTT+TGG | + | chr4.2:25970713-25970732 | MS.gene006892:CDS | 45.0% | |
| GGCTAGTGCAACTGTTACTA+TGG | + | chr4.2:25967851-25967870 | MS.gene006892:CDS | 45.0% | |
| GGCTCGACATTAGAAACCAA+AGG | - | chr4.2:25968481-25968500 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | - | chr4.2:25970250-25970269 | None:intergenic | 45.0% | |
| GGTGCAATCATTGGATCTGT+TGG | + | chr4.2:25970564-25970583 | MS.gene006892:CDS | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | + | chr4.2:25969960-25969979 | MS.gene006892:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | + | chr4.2:25967876-25967895 | MS.gene006892:CDS | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | - | chr4.2:25970292-25970311 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | - | chr4.2:25970497-25970516 | None:intergenic | 45.0% | |
| TCACCAAGGAAACTATGGGA+AGG | + | chr4.2:25970706-25970725 | MS.gene006892:CDS | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | + | chr4.2:25969130-25969149 | MS.gene006892:intron | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | - | chr4.2:25967397-25967416 | None:intergenic | 45.0% | |
| TCGACATTGTCAGTTGCGTT+AGG | + | chr4.2:25969615-25969634 | MS.gene006892:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | - | chr4.2:25969145-25969164 | None:intergenic | 45.0% | |
| TTCAAGGCCATCATCATAGC+AGG | + | chr4.2:25967387-25967406 | MS.gene006892:CDS | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | - | chr4.2:25970484-25970503 | None:intergenic | 45.0% | |
| TTCTTAGGGCTTGGAATTGG+TGG | + | chr4.2:25967726-25967745 | MS.gene006892:CDS | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | - | chr4.2:25970218-25970237 | None:intergenic | 45.0% | |
| ! | AGGAGCATGGATATCCTAAG+GGG | + | chr4.2:25970613-25970632 | MS.gene006892:CDS | 45.0% |
| ! | ATTTAAAGCGGGTGGAAGTG+AGG | + | chr4.2:25969403-25969422 | MS.gene006892:intron | 45.0% |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | + | chr4.2:25967642-25967661 | MS.gene006892:CDS | 45.0% |
| ! | GAAGGAGCATGGATATCCTA+AGG | + | chr4.2:25970611-25970630 | MS.gene006892:CDS | 45.0% |
| ! | TGATGAGTGTGATGGAGAAG+AGG | - | chr4.2:25967440-25967459 | None:intergenic | 45.0% |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | - | chr4.2:25970230-25970249 | None:intergenic | 45.0% |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | - | chr4.2:25970030-25970049 | None:intergenic | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | + | chr4.2:25970555-25970574 | MS.gene006892:CDS | 45.0% |
| !! | GGTTGACTTGACGGATTTCT+TGG | - | chr4.2:25967497-25967516 | None:intergenic | 45.0% |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | + | chr4.2:25970539-25970558 | MS.gene006892:CDS | 45.0% |
| !! | TGACTTGACGGATTTCTTGG+TGG | - | chr4.2:25967494-25967513 | None:intergenic | 45.0% |
| !! | TTGACGGATTTCTTGGTGGT+CGG | - | chr4.2:25967490-25967509 | None:intergenic | 45.0% |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | + | chr4.2:25967816-25967835 | MS.gene006892:CDS | 45.0% |
| AAGAGGGTAGGCAGCATTTG+TGG | - | chr4.2:25970043-25970062 | None:intergenic | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | - | chr4.2:25967614-25967633 | None:intergenic | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | + | chr4.2:25970496-25970515 | MS.gene006892:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | - | chr4.2:25970513-25970532 | None:intergenic | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | - | chr4.2:25970498-25970517 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | + | chr4.2:25970255-25970274 | MS.gene006892:CDS | 50.0% | |
| GGCCATCATCATAGCAGGAA+TGG | + | chr4.2:25967392-25967411 | MS.gene006892:CDS | 50.0% | |
| GGTTCTATCAGCCCTTGACT+CGG | + | chr4.2:25967344-25967363 | MS.gene006892:CDS | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | - | chr4.2:25970277-25970296 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | + | chr4.2:25970291-25970310 | MS.gene006892:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | - | chr4.2:25970276-25970295 | None:intergenic | 50.0% | |
| TAGGCAGCATTTGTGGTTGG+TGG | - | chr4.2:25970036-25970055 | None:intergenic | 50.0% | |
| ! | TGATGATGCCAGAAACTGCC+AGG | + | chr4.2:25968006-25968025 | MS.gene006892:CDS | 50.0% |
| !! | CATGGTATTTCTGGGGCTGT+TGG | + | chr4.2:25970534-25970553 | MS.gene006892:CDS | 50.0% |
| ATTTCGCAGCGGTTCGAAGC+CGG | + | chr4.2:25967887-25967906 | MS.gene006892:CDS | 55.0% | |
| CAACTCCTATTCGGACGCCT+CGG | + | chr4.2:25967570-25967589 | MS.gene006892:CDS | 55.0% | |
| GAATAGGAGTTGGCCGAAGG+CGG | - | chr4.2:25967562-25967581 | None:intergenic | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | - | chr4.2:25968027-25968046 | None:intergenic | 55.0% | |
| GCCTTCGGCCAACTCCTATT+CGG | + | chr4.2:25967561-25967580 | MS.gene006892:CDS | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | - | chr4.2:25970039-25970058 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | - | chr4.2:25970271-25970290 | None:intergenic | 55.0% | |
| TCCGAATAGGAGTTGGCCGA+AGG | - | chr4.2:25967565-25967584 | None:intergenic | 55.0% | |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | + | chr4.2:25970662-25970681 | MS.gene006892:CDS | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | + | chr4.2:25970663-25970682 | MS.gene006892:CDS | 55.0% |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | + | chr4.2:25970543-25970562 | MS.gene006892:CDS | 55.0% |
| !! | CAACGACCGGGTTGACTTGA+CGG | - | chr4.2:25967506-25967525 | None:intergenic | 55.0% |
| ACGAGGGCTGAGACAACGAC+CGG | - | chr4.2:25967519-25967538 | None:intergenic | 60.0% | |
| CTCCATGCAACGTCAGCCTC+CGG | - | chr4.2:25967933-25967952 | None:intergenic | 60.0% | |
| GCACTCCTAGGAACCGCCTT+CGG | + | chr4.2:25967546-25967565 | MS.gene006892:CDS | 60.0% | |
| GCCTCGGAGACCTAAAAGGC+CGG | + | chr4.2:25967586-25967605 | MS.gene006892:CDS | 60.0% | |
| GGACGCCTCGGAGACCTAAA+AGG | + | chr4.2:25967582-25967601 | MS.gene006892:CDS | 60.0% | |
| GGCACATCAAAAGCCGTCGC+CGG | - | chr4.2:25967909-25967928 | None:intergenic | 60.0% | |
| ! | CGAGGCGTCCGAATAGGAGT+TGG | - | chr4.2:25967572-25967591 | None:intergenic | 60.0% |
| ! | GACGGCTTTTGATGTGCCGC+CGG | + | chr4.2:25967911-25967930 | MS.gene006892:CDS | 60.0% |
| ! | TAGGAGTGCGACGGAGACGA+GGG | - | chr4.2:25967535-25967554 | None:intergenic | 60.0% |
| AAAGGCCGGCGCCACGTCTA+CGG | + | chr4.2:25967600-25967619 | MS.gene006892:CDS | 65.0% | |
| CATGCAACGTCAGCCTCCGG+CGG | - | chr4.2:25967930-25967949 | None:intergenic | 65.0% | |
| CGAGGGCTGAGACAACGACC+GGG | - | chr4.2:25967518-25967537 | None:intergenic | 65.0% | |
| CGATACCGTAGACGTGGCGC+CGG | - | chr4.2:25967608-25967627 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | + | chr4.2:25967931-25967950 | MS.gene006892:CDS | 65.0% | |
| CTCGTCTCCGTCGCACTCCT+AGG | + | chr4.2:25967534-25967553 | MS.gene006892:CDS | 65.0% | |
| GTTGGCCGAAGGCGGTTCCT+AGG | - | chr4.2:25967554-25967573 | None:intergenic | 65.0% | |
| ! | CTAGGAGTGCGACGGAGACG+AGG | - | chr4.2:25967536-25967555 | None:intergenic | 65.0% |
| ! | GGCGGTTCCTAGGAGTGCGA+CGG | - | chr4.2:25967544-25967563 | None:intergenic | 65.0% |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | + | chr4.2:25967914-25967933 | MS.gene006892:CDS | 65.0% |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | - | chr4.2:25967578-25967597 | None:intergenic | 65.0% |
| !! | GCCGGCCTTTTAGGTCTCCG+AGG | - | chr4.2:25967590-25967609 | None:intergenic | 65.0% |
| !!! | AGACGTGGCGCCGGCCTTTT+AGG | - | chr4.2:25967599-25967618 | None:intergenic | 65.0% |
| CAGCGGTTCGAAGCCGGCGA+CGG | + | chr4.2:25967893-25967912 | MS.gene006892:CDS | 70.0% | |
| CGCCGGAGGCTGACGTTGCA+TGG | + | chr4.2:25967928-25967947 | MS.gene006892:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 25967327 | 25970788 | 25967327 | ID=MS.gene006892 |
| chr4.2 | mRNA | 25967327 | 25970788 | 25967327 | ID=MS.gene006892.t1;Parent=MS.gene006892 |
| chr4.2 | exon | 25967327 | 25968027 | 25967327 | ID=MS.gene006892.t1.exon1;Parent=MS.gene006892.t1 |
| chr4.2 | CDS | 25967327 | 25968027 | 25967327 | ID=cds.MS.gene006892.t1;Parent=MS.gene006892.t1 |
| chr4.2 | exon | 25969933 | 25970788 | 25969933 | ID=MS.gene006892.t1.exon2;Parent=MS.gene006892.t1 |
| chr4.2 | CDS | 25969933 | 25970788 | 25969933 | ID=cds.MS.gene006892.t1;Parent=MS.gene006892.t1 |
| Gene Sequence |
| Protein sequence |
