Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56432.t1 | XP_003607875.1 | 98.6 | 518 | 7 | 0 | 1 | 518 | 1 | 518 | 1.20E-292 | 1015 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56432.t1 | Q9S735 | 64.1 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 3.7e-184 | 646.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56432.t1 | A2Q296 | 98.6 | 518 | 7 | 0 | 1 | 518 | 1 | 518 | 9.0e-293 | 1015.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059428 | MS.gene56432 | 0.92844 | 2.88E-92 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56432 | MS.gene25185 | PPI |
| MS.gene56432 | MS.gene020364 | PPI |
| MS.gene020365 | MS.gene56432 | PPI |
| MS.gene015655 | MS.gene56432 | PPI |
| MS.gene56432 | MS.gene97006 | PPI |
| MS.gene56432 | MS.gene23490 | PPI |
| MS.gene56432 | MS.gene98973 | PPI |
| MS.gene23489 | MS.gene56432 | PPI |
| MS.gene56432 | MS.gene018707 | PPI |
| MS.gene56432 | MS.gene83067 | PPI |
| MS.gene56432 | MS.gene067567 | PPI |
| MS.gene56432 | MS.gene026529 | PPI |
| MS.gene56432 | MS.gene97007 | PPI |
| MS.gene059428 | MS.gene56432 | PPI |
| MS.gene052674 | MS.gene56432 | PPI |
| MS.gene56432 | MS.gene018708 | PPI |
| MS.gene067063 | MS.gene56432 | PPI |
| MS.gene56432 | MS.gene020517 | PPI |
| MS.gene56432 | MS.gene052675 | PPI |
| MS.gene56432 | MS.gene006892 | PPI |
| MS.gene62686 | MS.gene56432 | PPI |
| MS.gene56432 | MS.gene052677 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56432.t1 | MTR_4g083960 | 98.649 | 518 | 7 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1059 |
| MS.gene56432.t1 | MTR_1g074930 | 54.699 | 532 | 217 | 10 | 1 | 513 | 1 | 527 | 0.0 | 544 |
| MS.gene56432.t1 | MTR_1g043200 | 54.064 | 529 | 223 | 9 | 1 | 514 | 1 | 524 | 0.0 | 537 |
| MS.gene56432.t1 | MTR_1g043220 | 53.846 | 533 | 222 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| MS.gene56432.t1 | MTR_1g043290 | 54.034 | 533 | 221 | 10 | 1 | 514 | 1 | 528 | 0.0 | 536 |
| MS.gene56432.t1 | MTR_3g082700 | 55.039 | 516 | 212 | 10 | 1 | 501 | 1 | 511 | 0.0 | 534 |
| MS.gene56432.t1 | MTR_1g069935 | 52.381 | 525 | 218 | 10 | 3 | 508 | 4 | 515 | 0.0 | 527 |
| MS.gene56432.t1 | MTR_7g096870 | 52.158 | 533 | 223 | 11 | 5 | 518 | 6 | 525 | 0.0 | 519 |
| MS.gene56432.t1 | MTR_7g096880 | 51.583 | 537 | 214 | 12 | 5 | 510 | 6 | 527 | 2.64e-177 | 509 |
| MS.gene56432.t1 | MTR_1g074940 | 52.549 | 510 | 214 | 10 | 5 | 501 | 6 | 500 | 2.02e-176 | 507 |
| MS.gene56432.t1 | MTR_1g069930 | 50.473 | 529 | 226 | 12 | 1 | 507 | 1 | 515 | 7.70e-172 | 496 |
| MS.gene56432.t1 | MTR_1g028600 | 49.423 | 520 | 239 | 11 | 4 | 513 | 2 | 507 | 5.16e-163 | 473 |
| MS.gene56432.t1 | MTR_5g068140 | 47.905 | 549 | 236 | 13 | 1 | 514 | 1 | 534 | 4.15e-157 | 459 |
| MS.gene56432.t1 | MTR_6g088450 | 24.514 | 514 | 307 | 16 | 12 | 500 | 45 | 502 | 1.03e-19 | 92.4 |
| MS.gene56432.t1 | MTR_3g084110 | 24.440 | 491 | 302 | 17 | 27 | 503 | 35 | 470 | 1.14e-18 | 89.4 |
| MS.gene56432.t1 | MTR_7g005910 | 21.888 | 498 | 311 | 17 | 26 | 505 | 39 | 476 | 9.69e-14 | 73.9 |
| MS.gene56432.t1 | MTR_4g072030 | 21.294 | 479 | 289 | 15 | 61 | 505 | 60 | 484 | 5.06e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56432.t1 | AT1G76430 | 64.078 | 515 | 168 | 7 | 5 | 507 | 4 | 513 | 0.0 | 676 |
| MS.gene56432.t1 | AT1G20860 | 63.602 | 522 | 174 | 7 | 5 | 517 | 55 | 569 | 0.0 | 667 |
| MS.gene56432.t1 | AT1G20860 | 63.602 | 522 | 174 | 7 | 5 | 517 | 3 | 517 | 0.0 | 667 |
| MS.gene56432.t1 | AT5G43350 | 54.111 | 523 | 216 | 11 | 5 | 510 | 6 | 521 | 0.0 | 539 |
| MS.gene56432.t1 | AT5G43360 | 54.054 | 518 | 216 | 11 | 5 | 507 | 6 | 516 | 0.0 | 534 |
| MS.gene56432.t1 | AT2G38940 | 53.846 | 520 | 216 | 13 | 1 | 503 | 1 | 513 | 0.0 | 525 |
| MS.gene56432.t1 | AT3G54700 | 53.448 | 522 | 222 | 11 | 5 | 513 | 6 | 519 | 0.0 | 523 |
| MS.gene56432.t1 | AT3G54700 | 53.448 | 522 | 222 | 11 | 5 | 513 | 6 | 519 | 0.0 | 523 |
| MS.gene56432.t1 | AT5G43370 | 53.992 | 526 | 218 | 11 | 5 | 513 | 6 | 524 | 3.49e-179 | 514 |
| MS.gene56432.t1 | AT5G43370 | 53.992 | 526 | 218 | 11 | 5 | 513 | 6 | 524 | 3.49e-179 | 514 |
| MS.gene56432.t1 | AT2G32830 | 51.810 | 525 | 227 | 11 | 3 | 508 | 4 | 521 | 5.09e-178 | 512 |
| MS.gene56432.t1 | AT5G43340 | 51.758 | 512 | 222 | 10 | 6 | 507 | 8 | 504 | 5.19e-171 | 493 |
| MS.gene56432.t1 | AT4G08878 | 54.701 | 234 | 90 | 5 | 30 | 252 | 13 | 241 | 2.69e-72 | 231 |
| MS.gene56432.t1 | AT4G08895 | 42.647 | 136 | 43 | 3 | 318 | 453 | 30 | 130 | 5.31e-27 | 107 |
| MS.gene56432.t1 | AT2G43330 | 22.335 | 394 | 252 | 11 | 132 | 512 | 131 | 483 | 9.38e-15 | 77.4 |
| MS.gene56432.t1 | AT3G18830 | 23.774 | 530 | 302 | 21 | 15 | 506 | 31 | 496 | 6.95e-12 | 68.2 |
Find 134 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTCTTTGCAAATTT+TGG | 0.012899 | 4.3:+27822229 | MS.gene56432:CDS |
| TCAACATGTCATGGTATTTC+TGG | 0.184785 | 4.3:+27822307 | MS.gene56432:CDS |
| ATGGATTCTCTTCGGTTATT+TGG | 0.195842 | 4.3:-27821790 | None:intergenic |
| GGTTTCTTCAGATTCTTCTT+AGG | 0.198704 | 4.3:+27819497 | MS.gene56432:CDS |
| AGAAACTACCTGGCAGTTTC+TGG | 0.216451 | 4.3:-27819800 | None:intergenic |
| TGTCTGAGTTTGCTAATAAA+AGG | 0.237042 | 4.3:+27819561 | MS.gene56432:CDS |
| TTTGGTCCAATGAGAGTAAT+AGG | 0.245047 | 4.3:-27822161 | None:intergenic |
| TATGCAAGGGTTTGGTATAT+TGG | 0.253824 | 4.3:+27819616 | MS.gene56432:CDS |
| TTGGATCTGTAGGATTTCTT+TGG | 0.269360 | 4.3:+27822356 | MS.gene56432:CDS |
| CAGCTGCATTGACTTATTAT+TGG | 0.282392 | 4.3:+27819765 | MS.gene56432:CDS |
| TTCAGATTCTTCTTAGGGCT+TGG | 0.291000 | 4.3:+27819503 | MS.gene56432:CDS |
| GCTGTTTGCTCTACCATTCC+CGG | 0.304136 | 4.3:+27822037 | MS.gene56432:CDS |
| GGAAACTATGGGAAGGTCTT+TGG | 0.311857 | 4.3:+27822495 | MS.gene56432:CDS |
| TGGATCTGTAGGATTTCTTT+GGG | 0.330065 | 4.3:+27822357 | MS.gene56432:CDS |
| GGCTAGTGCAACTGTTACTA+TGG | 0.333298 | 4.3:+27819637 | MS.gene56432:CDS |
| GGTTGACTTGACGAATTTCT+TGG | 0.342709 | 4.3:-27819280 | None:intergenic |
| GTTTCTTCAGATTCTTCTTA+GGG | 0.347829 | 4.3:+27819498 | MS.gene56432:CDS |
| GCATTTGTGGTTGGTGGTAA+TGG | 0.351217 | 4.3:-27821809 | None:intergenic |
| AACTCTTTCCAGCTAGGTTC+AGG | 0.354273 | 4.3:+27822284 | MS.gene56432:CDS |
| GCTTGTTAGCATCAATAATA+AGG | 0.362995 | 4.3:-27819414 | None:intergenic |
| TCTGGGGCTGTTGGTAAGGT+TGG | 0.368628 | 4.3:+27822325 | MS.gene56432:CDS |
| GGACGCCTCGGAGACCTAAA+AGG | 0.373921 | 4.3:+27819368 | MS.gene56432:CDS |
| GGTTTCCCTATTACTCTCAT+TGG | 0.377430 | 4.3:+27822155 | MS.gene56432:CDS |
| GACATAATGGTAGAAGATAA+AGG | 0.378353 | 4.3:-27819542 | None:intergenic |
| TTCTTCTTAGGGCTTGGAAT+TGG | 0.378577 | 4.3:+27819509 | MS.gene56432:CDS |
| TTCTTAGGGCTTGGAATTGG+TGG | 0.382861 | 4.3:+27819512 | MS.gene56432:CDS |
| ATTAGCAAACTCAGACATAA+TGG | 0.389302 | 4.3:-27819555 | None:intergenic |
| ACAATAAAGGTGGTAGTGTT+AGG | 0.397982 | 4.3:-27822253 | None:intergenic |
| TCATGATAACAAAGGGTTCA+TGG | 0.404520 | 4.3:+27822192 | MS.gene56432:CDS |
| CTAACAAGCTCTCTAGCTTC+TGG | 0.406505 | 4.3:+27819428 | MS.gene56432:CDS |
| CAACATGTCATGGTATTTCT+GGG | 0.410467 | 4.3:+27822308 | MS.gene56432:CDS |
| AAAGGGTTCATGGTTATCTA+TGG | 0.427006 | 4.3:+27822202 | MS.gene56432:CDS |
| TGTTACTATGGTGGTTTGCT+TGG | 0.428921 | 4.3:+27819649 | MS.gene56432:CDS |
| GGTAAGGTTGGTGCAATCAT+TGG | 0.429582 | 4.3:+27822337 | MS.gene56432:CDS |
| AGACCTTCCCATAGTTTCCT+TGG | 0.431457 | 4.3:-27822491 | None:intergenic |
| GGTCTCCGAGGCGTCCGAAT+AGG | 0.438994 | 4.3:-27819361 | None:intergenic |
| TATTTCTGGGGCTGTTGGTA+AGG | 0.444891 | 4.3:+27822321 | MS.gene56432:CDS |
| AAGAGTTAAAATCCAAATGA+TGG | 0.452565 | 4.3:+27822096 | MS.gene56432:CDS |
| GCCTTCGGTCAGCTCCTATT+CGG | 0.459127 | 4.3:+27819347 | MS.gene56432:CDS |
| CGCCGGAGGCTGACGTTGCA+TGG | 0.463769 | 4.3:+27819714 | MS.gene56432:CDS |
| AACACAATACTACCATTTCA+AGG | 0.465634 | 4.3:+27819157 | MS.gene56432:CDS |
| TGGTGGTAATGGATTCTCTT+CGG | 0.465888 | 4.3:-27821798 | None:intergenic |
| CAGCTGAACTCTTTCCAGCT+AGG | 0.466833 | 4.3:+27822278 | MS.gene56432:CDS |
| CTCCATGCAACGTCAGCCTC+CGG | 0.468310 | 4.3:-27819716 | None:intergenic |
| GAGTTCAGCTGGGACAATAA+AGG | 0.470332 | 4.3:-27822266 | None:intergenic |
| ATCGTTTGTATATTTCACTT+TGG | 0.472004 | 4.3:-27821943 | None:intergenic |
| CTTGGAGGGGTGTGCATAGT+GGG | 0.472095 | 4.3:+27822445 | MS.gene56432:CDS |
| AAGAATTCTCTTGAAAGAAG+AGG | 0.472184 | 4.3:-27821839 | None:intergenic |
| CTTGTCTCCGTTGCACTCCT+AGG | 0.476567 | 4.3:+27819320 | MS.gene56432:CDS |
| GAAAATGGCAAGAGGATTGA+AGG | 0.478791 | 4.3:+27819109 | None:intergenic |
| GCTGACCGAAGGCGGTTCCT+AGG | 0.479516 | 4.3:-27819337 | None:intergenic |
| CATGTTGACCTGAACCTAGC+TGG | 0.479877 | 4.3:-27822292 | None:intergenic |
| CTAGCTGGAAAGAGTTCAGC+TGG | 0.480788 | 4.3:-27822277 | None:intergenic |
| AAAGCCTCACTTATCATACT+TGG | 0.482489 | 4.3:+27822427 | MS.gene56432:CDS |
| GGTAGAGCAAACAGCAAGAA+TGG | 0.483548 | 4.3:-27822029 | None:intergenic |
| CTATGATGATGGCCTTGAAA+TGG | 0.485108 | 4.3:-27819169 | None:intergenic |
| TTTCACTTTGGAATAGAACT+TGG | 0.486743 | 4.3:-27821931 | None:intergenic |
| AAGAGGGTAGGCAGCATTTG+TGG | 0.490158 | 4.3:-27821822 | None:intergenic |
| CATTAGGTATACAGCATTAG+TGG | 0.491216 | 4.3:+27821709 | MS.gene56432:intron |
| TGGAGGTTGATATTGATGAT+TGG | 0.491970 | 4.3:+27819734 | MS.gene56432:CDS |
| GAGAAAATCATGATAACAAA+GGG | 0.493974 | 4.3:+27822185 | MS.gene56432:CDS |
| TTGCAAGATGGAAAGCCTCT+TGG | 0.498386 | 4.3:-27821997 | None:intergenic |
| GGCACATCAAAAGCCGTCTC+CGG | 0.505349 | 4.3:-27819692 | None:intergenic |
| ATTTCGCAGCGGTTCGAAGC+CGG | 0.506942 | 4.3:+27819673 | MS.gene56432:CDS |
| GCACTCCTAGGAACCGCCTT+CGG | 0.509045 | 4.3:+27819332 | MS.gene56432:CDS |
| GCCTCACTTATCATACTTGG+AGG | 0.509162 | 4.3:+27822430 | MS.gene56432:CDS |
| TTGACGAATTTCTTGGTGGT+CGG | 0.510171 | 4.3:-27819273 | None:intergenic |
| CAGCGGTTCGAAGCCGGAGA+CGG | 0.512536 | 4.3:+27819679 | MS.gene56432:CDS |
| TGGCTTGGATTCTTGCAAGA+TGG | 0.513731 | 4.3:-27822009 | None:intergenic |
| AGCTCTCTTTGTTGTACAGA+TGG | 0.516588 | 4.3:-27819456 | None:intergenic |
| TTGGTCCAATGAGAGTAATA+GGG | 0.517347 | 4.3:-27822160 | None:intergenic |
| GCCATCATCATAGCAGGAAT+GGG | 0.519478 | 4.3:+27819179 | MS.gene56432:CDS |
| ACTTGGAGGGGTGTGCATAG+TGG | 0.520704 | 4.3:+27822444 | MS.gene56432:CDS |
| TCCCATTCCTGCTATGATGA+TGG | 0.520757 | 4.3:-27819180 | None:intergenic |
| GAAGGAGCAAGGATATCCTA+AGG | 0.523198 | 4.3:+27822393 | MS.gene56432:CDS |
| CTAGGAGTGCAACGGAGACA+AGG | 0.527505 | 4.3:-27819319 | None:intergenic |
| GGCCATCATCATAGCAGGAA+TGG | 0.527722 | 4.3:+27819178 | MS.gene56432:CDS |
| AGAGTTAAAATCCAAATGAT+GGG | 0.528348 | 4.3:+27822097 | MS.gene56432:CDS |
| GGTGCAATCATTGGATCTGT+AGG | 0.529168 | 4.3:+27822346 | MS.gene56432:CDS |
| TTCTTTCAAGAGAATTCTTG+TGG | 0.530678 | 4.3:+27821843 | MS.gene56432:CDS |
| TAGGCAGCATTTGTGGTTGG+TGG | 0.531743 | 4.3:-27821815 | None:intergenic |
| AGCAAACAGCAAGAATGGCT+TGG | 0.533200 | 4.3:-27822024 | None:intergenic |
| CATGGTATTTCTGGGGCTGT+TGG | 0.533358 | 4.3:+27822316 | MS.gene56432:CDS |
| TTCAAGGCCATCATCATAGC+AGG | 0.537123 | 4.3:+27819173 | MS.gene56432:CDS |
| TGACTTGACGAATTTCTTGG+TGG | 0.544986 | 4.3:-27819277 | None:intergenic |
| AAGGTCTTTGGAAGAGAATG+AGG | 0.545988 | 4.3:+27822507 | MS.gene56432:CDS |
| TGATGATGCCAGAAACTGCC+AGG | 0.550572 | 4.3:+27819792 | MS.gene56432:CDS |
| CAATAATAAGTCAATGCAGC+TGG | 0.561487 | 4.3:-27819764 | None:intergenic |
| ACAAGGGCTGAGACAACGAC+CGG | 0.565427 | 4.3:-27819302 | None:intergenic |
| GGGTAGGCAGCATTTGTGGT+TGG | 0.568959 | 4.3:-27821818 | None:intergenic |
| TTTGCTAATAAAAGGACAAG+AGG | 0.571218 | 4.3:+27819569 | MS.gene56432:CDS |
| GGAGAAAATCATGATAACAA+AGG | 0.571581 | 4.3:+27822184 | MS.gene56432:CDS |
| AGAATTCTCTTGAAAGAAGA+GGG | 0.572284 | 4.3:-27821838 | None:intergenic |
| AAAGGCCGACGCCACGTCTA+CGG | 0.572932 | 4.3:+27819386 | MS.gene56432:CDS |
| CCTCACTTATCATACTTGGA+GGG | 0.573294 | 4.3:+27822431 | MS.gene56432:CDS |
| AGAGAATTCTTGTGGCGACA+CGG | 0.577127 | 4.3:+27821851 | MS.gene56432:CDS |
| AAGGAGCAAGGATATCCTAA+GGG | 0.581804 | 4.3:+27822394 | MS.gene56432:CDS |
| GGTGAAGAAGTAGCCGGGAA+TGG | 0.582583 | 4.3:-27822050 | None:intergenic |
| CAAAATCAGAAAATGGCAAG+AGG | 0.585885 | 4.3:+27819101 | None:intergenic |
| TAGACGGTGAAGAAGTAGCC+GGG | 0.588557 | 4.3:-27822055 | None:intergenic |
| TATTACTCTCATTGGACCAA+AGG | 0.589189 | 4.3:+27822163 | MS.gene56432:CDS |
| ACACTCATCACAAAGATGCT+AGG | 0.592024 | 4.3:+27819236 | MS.gene56432:CDS |
| TAGTGCAACTGTTACTATGG+TGG | 0.593095 | 4.3:+27819640 | MS.gene56432:CDS |
| CAGCTCCTATTCGGACGCCT+CGG | 0.593118 | 4.3:+27819356 | MS.gene56432:CDS |
| TTGGGCATCACATAAAGAGA+AGG | 0.594444 | 4.3:+27822375 | MS.gene56432:CDS |
| GTAGACGGTGAAGAAGTAGC+CGG | 0.596248 | 4.3:-27822056 | None:intergenic |
| TCCGAATAGGAGCTGACCGA+AGG | 0.598389 | 4.3:-27819348 | None:intergenic |
| CTCACTTATCATACTTGGAG+GGG | 0.600686 | 4.3:+27822432 | MS.gene56432:CDS |
| TTCTCTTGAAAGAAGAGGGT+AGG | 0.600721 | 4.3:-27821834 | None:intergenic |
| TCACCAAGGAAACTATGGGA+AGG | 0.613776 | 4.3:+27822488 | MS.gene56432:CDS |
| AGGTTCAGGTCAACATGTCA+TGG | 0.614954 | 4.3:+27822298 | MS.gene56432:CDS |
| CATGCAACGTCAGCCTCCGG+CGG | 0.616211 | 4.3:-27819713 | None:intergenic |
| CATCTTTGTGATGAGTGTGA+TGG | 0.618124 | 4.3:-27819231 | None:intergenic |
| TCACATAAAGAGAAGGAGCA+AGG | 0.619218 | 4.3:+27822382 | MS.gene56432:CDS |
| GAATAGGAGCTGACCGAAGG+CGG | 0.621080 | 4.3:-27819345 | None:intergenic |
| AACATGTCATGGTATTTCTG+GGG | 0.624270 | 4.3:+27822309 | MS.gene56432:CDS |
| TGATGAGTGTGATGGAGAAG+AGG | 0.629463 | 4.3:-27819223 | None:intergenic |
| CGATACCGTAGACGTGGCGT+CGG | 0.639282 | 4.3:-27819391 | None:intergenic |
| AGAAATTCGTCAAGTCAACC+CGG | 0.643622 | 4.3:+27819283 | MS.gene56432:CDS |
| GGCGGTTCCTAGGAGTGCAA+CGG | 0.644168 | 4.3:-27819327 | None:intergenic |
| TAGGAGTGCAACGGAGACAA+GGG | 0.648022 | 4.3:-27819318 | None:intergenic |
| TGAAGAAGATGTGTACCAAG+AGG | 0.649402 | 4.3:+27821982 | MS.gene56432:CDS |
| GTTGCAAGCTGCAAAAGACA+TGG | 0.660760 | 4.3:+27821742 | MS.gene56432:CDS |
| TTCAGCTGGGACAATAAAGG+TGG | 0.666270 | 4.3:-27822263 | None:intergenic |
| TAGCTGGAAAGAGTTCAGCT+GGG | 0.667181 | 4.3:-27822276 | None:intergenic |
| CCCTCCAAGTATGATAAGTG+AGG | 0.670122 | 4.3:-27822431 | None:intergenic |
| AGGAGCAAGGATATCCTAAG+GGG | 0.670314 | 4.3:+27822395 | MS.gene56432:CDS |
| TACGCGATCGATGAAGTAGA+CGG | 0.672938 | 4.3:-27822071 | None:intergenic |
| CAAGGGCTGAGACAACGACC+GGG | 0.674269 | 4.3:-27819301 | None:intergenic |
| GTTTGCTTGGTATTTCGCAG+CGG | 0.690623 | 4.3:+27819662 | MS.gene56432:CDS |
| CGGAGGCTGACGTTGCATGG+AGG | 0.694489 | 4.3:+27819717 | MS.gene56432:CDS |
| ATAAGGCGATACCGTAGACG+TGG | 0.708896 | 4.3:-27819397 | None:intergenic |
| GTCTACTTCATCGATCGCGT+AGG | 0.713972 | 4.3:+27822073 | MS.gene56432:CDS |
| GGAGCAAGGATATCCTAAGG+GGG | 0.734931 | 4.3:+27822396 | MS.gene56432:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATTATATATAAAA+AGG | + | chr4.3:27819912-27819931 | MS.gene56432:intron | 0.0% |
| !! | AAATATATTATATATAAAAA+GGG | + | chr4.3:27819913-27819932 | MS.gene56432:intron | 0.0% |
| !!! | TAAAATTTTAAAATTTTATA+AGG | - | chr4.3:27820475-27820494 | None:intergenic | 0.0% |
| !! | TATAAAATTTAAATTCAACT+AGG | - | chr4.3:27820887-27820906 | None:intergenic | 10.0% |
| !! | TTAAATTCAAATGAAAATAA+TGG | + | chr4.3:27820796-27820815 | MS.gene56432:intron | 10.0% |
| !! | AACTTATTATCGAAATAAAT+TGG | - | chr4.3:27821442-27821461 | None:intergenic | 15.0% |
| !! | AATAAAAAAAAATGAACACT+TGG | - | chr4.3:27820213-27820232 | None:intergenic | 15.0% |
| !! | ACAAAATGCATTATTTAAAA+GGG | - | chr4.3:27820685-27820704 | None:intergenic | 15.0% |
| !! | CTAAAACATTGTTAATTAAA+TGG | - | chr4.3:27820957-27820976 | None:intergenic | 15.0% |
| !!! | ATTTTTAAATATCTGAAGTT+TGG | + | chr4.3:27819871-27819890 | MS.gene56432:intron | 15.0% |
| !!! | GTGTATTTTTATTTTCTTTT+TGG | - | chr4.3:27819959-27819978 | None:intergenic | 15.0% |
| !!! | GTTTGGTTTTTTTTTTTAAA+TGG | + | chr4.3:27819888-27819907 | MS.gene56432:intron | 15.0% |
| !!! | TAAAGACTATCTAAAAATTT+TGG | + | chr4.3:27820541-27820560 | MS.gene56432:intron | 15.0% |
| !!! | TTCTAACTATTTTTAATGTT+CGG | - | chr4.3:27820395-27820414 | None:intergenic | 15.0% |
| !! | AAAATATATTGATGTCTTTG+TGG | - | chr4.3:27820574-27820593 | None:intergenic | 20.0% |
| !! | AATAACATTATCTTGTTACT+AGG | + | chr4.3:27821249-27821268 | MS.gene56432:intron | 20.0% |
| !! | ATAACATTATCTTGTTACTA+GGG | + | chr4.3:27821250-27821269 | MS.gene56432:intron | 20.0% |
| !! | ATGGCATTAATTAAATGTAT+TGG | + | chr4.3:27820815-27820834 | MS.gene56432:intron | 20.0% |
| !! | ATTAAATATACCAAGTATAG+AGG | - | chr4.3:27819853-27819872 | None:intergenic | 20.0% |
| !! | CACAAAATGCATTATTTAAA+AGG | - | chr4.3:27820686-27820705 | None:intergenic | 20.0% |
| !! | TAATTAGTATAGAAAATGCA+AGG | + | chr4.3:27821155-27821174 | MS.gene56432:intron | 20.0% |
| !! | TTAAATATACCAAGTATAGA+GGG | - | chr4.3:27819852-27819871 | None:intergenic | 20.0% |
| !! | TTTACGGACAAAAAAAAAAT+TGG | - | chr4.3:27821291-27821310 | None:intergenic | 20.0% |
| !!! | AATTGAAGTACTATTATGTT+CGG | - | chr4.3:27821600-27821619 | None:intergenic | 20.0% |
| !!! | GCATTTTCTATACTAATTAT+TGG | - | chr4.3:27821154-27821173 | None:intergenic | 20.0% |
| !!! | TATGTATCCAAGAAAATTTT+AGG | + | chr4.3:27820184-27820203 | MS.gene56432:intron | 20.0% |
| !!! | TTAATTAAATGTATTGGCAA+AGG | + | chr4.3:27820821-27820840 | MS.gene56432:intron | 20.0% |
| !!! | TTTTAGATAGTCTTTATTTG+TGG | - | chr4.3:27820537-27820556 | None:intergenic | 20.0% |
| ! | AAATGGTTAAACTTACTTGA+AGG | - | chr4.3:27820940-27820959 | None:intergenic | 25.0% |
| ! | AACAATTGAATAACGTACTA+TGG | + | chr4.3:27821680-27821699 | MS.gene56432:intron | 25.0% |
| ! | AAGAGTTAAAATCCAAATGA+TGG | + | chr4.3:27822096-27822115 | MS.gene56432:CDS | 25.0% |
| ! | AATTATTGGCATTCTCTTAT+TGG | - | chr4.3:27821140-27821159 | None:intergenic | 25.0% |
| ! | AGAGTTAAAATCCAAATGAT+GGG | + | chr4.3:27822097-27822116 | MS.gene56432:CDS | 25.0% |
| ! | ATATAAGAAAGTCATAGGTA+CGG | - | chr4.3:27820744-27820763 | None:intergenic | 25.0% |
| ! | ATCGTTTGTATATTTCACTT+TGG | - | chr4.3:27821946-27821965 | None:intergenic | 25.0% |
| ! | CAAAAAATGTCCATTTCAAA+TGG | - | chr4.3:27820771-27820790 | None:intergenic | 25.0% |
| ! | GAGAAAATCATGATAACAAA+GGG | + | chr4.3:27822185-27822204 | MS.gene56432:CDS | 25.0% |
| ! | TAAATTAGAATCGACAAAGT+TGG | - | chr4.3:27821471-27821490 | None:intergenic | 25.0% |
| ! | TACCTATGACTTTCTTATAT+GGG | + | chr4.3:27820744-27820763 | MS.gene56432:intron | 25.0% |
| ! | TATCCGTTAACAAGATATTT+AGG | - | chr4.3:27820285-27820304 | None:intergenic | 25.0% |
| !! | AAGGCTGATTTAATTTAAAG+CGG | + | chr4.3:27821174-27821193 | MS.gene56432:intron | 25.0% |
| !! | CATTGCATTTTTAATGTTCA+TGG | + | chr4.3:27821649-27821668 | MS.gene56432:intron | 25.0% |
| !! | TTGGTATCCTAAAATTTTCT+TGG | - | chr4.3:27820194-27820213 | None:intergenic | 25.0% |
| !!! | AACAATGTTTTAGTCAAAGA+AGG | + | chr4.3:27820964-27820983 | MS.gene56432:intron | 25.0% |
| !!! | CATTTGAAATGGACATTTTT+TGG | + | chr4.3:27820769-27820788 | MS.gene56432:intron | 25.0% |
| !!! | TTCTTTTTGGTGTATTACTT+GGG | - | chr4.3:27819946-27819965 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTGGTGTATTACT+TGG | - | chr4.3:27819947-27819966 | None:intergenic | 25.0% |
| AAAGAAGGAATGGAATAGAA+AGG | + | chr4.3:27820979-27820998 | MS.gene56432:intron | 30.0% | |
| AACACAATACTACCATTTCA+AGG | + | chr4.3:27819157-27819176 | MS.gene56432:CDS | 30.0% | |
| AAGAATTCTCTTGAAAGAAG+AGG | - | chr4.3:27821842-27821861 | None:intergenic | 30.0% | |
| AGAATTCTCTTGAAAGAAGA+GGG | - | chr4.3:27821841-27821860 | None:intergenic | 30.0% | |
| ATTAGCAAACTCAGACATAA+TGG | - | chr4.3:27819558-27819577 | None:intergenic | 30.0% | |
| CAACCAAACTTCAGATATAT+GGG | - | chr4.3:27819989-27820008 | None:intergenic | 30.0% | |
| CATATTTAACCCTCTATACT+TGG | + | chr4.3:27819840-27819859 | MS.gene56432:intron | 30.0% | |
| CTAAATTCGAACTCGTATTA+AGG | + | chr4.3:27821357-27821376 | MS.gene56432:intron | 30.0% | |
| GACATAATGGTAGAAGATAA+AGG | - | chr4.3:27819545-27819564 | None:intergenic | 30.0% | |
| GAGCCTAAATATCTTGTTAA+CGG | + | chr4.3:27820279-27820298 | MS.gene56432:intron | 30.0% | |
| GGAGAAAATCATGATAACAA+AGG | + | chr4.3:27822184-27822203 | MS.gene56432:CDS | 30.0% | |
| GTACCTATGACTTTCTTATA+TGG | + | chr4.3:27820743-27820762 | MS.gene56432:intron | 30.0% | |
| GTTTCTTCAGATTCTTCTTA+GGG | + | chr4.3:27819498-27819517 | MS.gene56432:CDS | 30.0% | |
| TCAACCAAACTTCAGATATA+TGG | - | chr4.3:27819990-27820009 | None:intergenic | 30.0% | |
| TGAAGAAAAAACCCATCATT+TGG | - | chr4.3:27822111-27822130 | None:intergenic | 30.0% | |
| TGGTATCAATGAAGTTTGAT+GGG | - | chr4.3:27820049-27820068 | None:intergenic | 30.0% | |
| TTAAATATGCGAAGTAGAGA+GGG | - | chr4.3:27819829-27819848 | None:intergenic | 30.0% | |
| TTATATGGGTCCATTTGAAA+TGG | + | chr4.3:27820758-27820777 | MS.gene56432:intron | 30.0% | |
| TTCTTTCAAGAGAATTCTTG+TGG | + | chr4.3:27821843-27821862 | MS.gene56432:CDS | 30.0% | |
| TTGAAAACCTTATCTGAATC+TGG | + | chr4.3:27821564-27821583 | MS.gene56432:intron | 30.0% | |
| TTTGCTAATAAAAGGACAAG+AGG | + | chr4.3:27819569-27819588 | MS.gene56432:CDS | 30.0% | |
| ! | AGGCTGATTTAATTTAAAGC+GGG | + | chr4.3:27821175-27821194 | MS.gene56432:intron | 30.0% |
| ! | GCTTGTTAGCATCAATAATA+AGG | - | chr4.3:27819417-27819436 | None:intergenic | 30.0% |
| ! | GCTTTCTTCTTTGCAAATTT+TGG | + | chr4.3:27822229-27822248 | MS.gene56432:CDS | 30.0% |
| ! | GTTATCATGATTTTCTCCTT+TGG | - | chr4.3:27822182-27822201 | None:intergenic | 30.0% |
| ! | TTTTTCACCAAGGAAACTAT+GGG | + | chr4.3:27822484-27822503 | MS.gene56432:CDS | 30.0% |
| ! | TTTTTGCATGTTCTGCTAAT+TGG | + | chr4.3:27821882-27821901 | MS.gene56432:CDS | 30.0% |
| !! | TGTCTGAGTTTGCTAATAAA+AGG | + | chr4.3:27819561-27819580 | MS.gene56432:CDS | 30.0% |
| !! | TTTCACTTTGGAATAGAACT+TGG | - | chr4.3:27821934-27821953 | None:intergenic | 30.0% |
| !!! | AATGATGGGTTTTTTCTTCA+TGG | + | chr4.3:27822111-27822130 | MS.gene56432:CDS | 30.0% |
| !!! | CAGTGTCATTTTTTGCTTTA+GGG | + | chr4.3:27822134-27822153 | MS.gene56432:CDS | 30.0% |
| !!! | TGTTACTTACTTTTTCACCA+AGG | + | chr4.3:27822474-27822493 | MS.gene56432:CDS | 30.0% |
| !!! | TGTTTTAGTCAAAGAAGGAA+TGG | + | chr4.3:27820969-27820988 | MS.gene56432:intron | 30.0% |
| AAAGCCTCACTTATCATACT+TGG | + | chr4.3:27822427-27822446 | MS.gene56432:CDS | 35.0% | |
| AAAGGGTTCATGGTTATCTA+TGG | + | chr4.3:27822202-27822221 | MS.gene56432:CDS | 35.0% | |
| ACATTATCTTGTTACTAGGG+AGG | + | chr4.3:27821253-27821272 | MS.gene56432:intron | 35.0% | |
| AGGTGGTAAATTAACACGAT+AGG | - | chr4.3:27820240-27820259 | None:intergenic | 35.0% | |
| ATGGATTCTCTTCGGTTATT+TGG | - | chr4.3:27821793-27821812 | None:intergenic | 35.0% | |
| ATTAAATTCCTTGCGTCATG+CGG | + | chr4.3:27821033-27821052 | MS.gene56432:intron | 35.0% | |
| CAACATGTCATGGTATTTCT+GGG | + | chr4.3:27822308-27822327 | MS.gene56432:CDS | 35.0% | |
| CAATAATAAGTCAATGCAGC+TGG | - | chr4.3:27819767-27819786 | None:intergenic | 35.0% | |
| CAATGTCGATATTGTTAGGT+TGG | - | chr4.3:27821386-27821405 | None:intergenic | 35.0% | |
| CACAAAAAATGAACGAACAG+TGG | - | chr4.3:27820069-27820088 | None:intergenic | 35.0% | |
| CATTAGGTATACAGCATTAG+TGG | + | chr4.3:27821709-27821728 | MS.gene56432:intron | 35.0% | |
| CTGACAATGTCGATATTGTT+AGG | - | chr4.3:27821390-27821409 | None:intergenic | 35.0% | |
| GAATTCAGTTGATCATCTTG+TGG | + | chr4.3:27821498-27821517 | MS.gene56432:intron | 35.0% | |
| GACCCATATAAGAAAGTCAT+AGG | - | chr4.3:27820749-27820768 | None:intergenic | 35.0% | |
| GGTTTCTTCAGATTCTTCTT+AGG | + | chr4.3:27819497-27819516 | MS.gene56432:CDS | 35.0% | |
| GTGGTATCAATGAAGTTTGA+TGG | - | chr4.3:27820050-27820069 | None:intergenic | 35.0% | |
| GTTAAATATGCGAAGTAGAG+AGG | - | chr4.3:27819830-27819849 | None:intergenic | 35.0% | |
| GTTAATTTACCACCTACCTT+TGG | + | chr4.3:27820245-27820264 | MS.gene56432:intron | 35.0% | |
| TAAATATGCGAAGTAGAGAG+GGG | - | chr4.3:27819828-27819847 | None:intergenic | 35.0% | |
| TACTATTATGTTCGGCTAAG+TGG | - | chr4.3:27821592-27821611 | None:intergenic | 35.0% | |
| TATTACTCTCATTGGACCAA+AGG | + | chr4.3:27822163-27822182 | MS.gene56432:CDS | 35.0% | |
| TCAACATGTCATGGTATTTC+TGG | + | chr4.3:27822307-27822326 | MS.gene56432:CDS | 35.0% | |
| TCATGATAACAAAGGGTTCA+TGG | + | chr4.3:27822192-27822211 | MS.gene56432:CDS | 35.0% | |
| TGGATCTGTAGGATTTCTTT+GGG | + | chr4.3:27822357-27822376 | MS.gene56432:CDS | 35.0% | |
| TTGGATCTGTAGGATTTCTT+TGG | + | chr4.3:27822356-27822375 | MS.gene56432:CDS | 35.0% | |
| TTGGTCCAATGAGAGTAATA+GGG | - | chr4.3:27822163-27822182 | None:intergenic | 35.0% | |
| TTTGGTCCAATGAGAGTAAT+AGG | - | chr4.3:27822164-27822183 | None:intergenic | 35.0% | |
| ! | AACATGTCATGGTATTTCTG+GGG | + | chr4.3:27822309-27822328 | MS.gene56432:CDS | 35.0% |
| ! | AAGAGGTTCTTTTATAGCTG+CGG | + | chr4.3:27819586-27819605 | MS.gene56432:CDS | 35.0% |
| ! | ACAATAAAGGTGGTAGTGTT+AGG | - | chr4.3:27822256-27822275 | None:intergenic | 35.0% |
| ! | ACACCCATATATCTGAAGTT+TGG | + | chr4.3:27819983-27820002 | MS.gene56432:intron | 35.0% |
| ! | CTGATTTAATTTAAAGCGGG+TGG | + | chr4.3:27821178-27821197 | MS.gene56432:intron | 35.0% |
| ! | CTTCAGATATATGGGTGTTT+TGG | - | chr4.3:27819981-27820000 | None:intergenic | 35.0% |
| ! | GCTTGTGTTTTACTATCTCT+TGG | + | chr4.3:27819476-27819495 | MS.gene56432:CDS | 35.0% |
| ! | TATGCAAGGGTTTGGTATAT+TGG | + | chr4.3:27819616-27819635 | MS.gene56432:CDS | 35.0% |
| ! | TCTTGTTAACGGATACTCAA+TGG | + | chr4.3:27820290-27820309 | MS.gene56432:intron | 35.0% |
| !! | ATTGTGTTTTTGCTGAGTCA+AGG | - | chr4.3:27819145-27819164 | None:intergenic | 35.0% |
| !! | CAGCTGCATTGACTTATTAT+TGG | + | chr4.3:27819765-27819784 | MS.gene56432:CDS | 35.0% |
| !! | CTTCTTCATCTTTTTCGTTG+AGG | - | chr4.3:27821970-27821989 | None:intergenic | 35.0% |
| !! | CTTTTTCACCAAGGAAACTA+TGG | + | chr4.3:27822483-27822502 | MS.gene56432:CDS | 35.0% |
| !! | TGGAGGTTGATATTGATGAT+TGG | + | chr4.3:27819734-27819753 | MS.gene56432:CDS | 35.0% |
| !! | TTGTGTTTTTGCTGAGTCAA+GGG | - | chr4.3:27819144-27819163 | None:intergenic | 35.0% |
| !!! | CTGTTCGTTCATTTTTTGTG+TGG | + | chr4.3:27820069-27820088 | MS.gene56432:intron | 35.0% |
| !!! | GCAGTGTCATTTTTTGCTTT+AGG | + | chr4.3:27822133-27822152 | MS.gene56432:CDS | 35.0% |
| !!! | GTTTTTTCTATGCAAGGGTT+TGG | + | chr4.3:27819608-27819627 | MS.gene56432:CDS | 35.0% |
| !!! | TTTTTTGTCCGTAAACGAAG+TGG | + | chr4.3:27821296-27821315 | MS.gene56432:intron | 35.0% |
| AAGGAGCAAGGATATCCTAA+GGG | + | chr4.3:27822394-27822413 | MS.gene56432:CDS | 40.0% | |
| ACACTCATCACAAAGATGCT+AGG | + | chr4.3:27819236-27819255 | MS.gene56432:CDS | 40.0% | |
| AGAAATTCGTCAAGTCAACC+CGG | + | chr4.3:27819283-27819302 | MS.gene56432:CDS | 40.0% | |
| AGTGGAACCAGATTCAGATA+AGG | - | chr4.3:27821574-27821593 | None:intergenic | 40.0% | |
| CATCTTTGTGATGAGTGTGA+TGG | - | chr4.3:27819234-27819253 | None:intergenic | 40.0% | |
| CATTAGAAACCAAAGGTAGG+TGG | - | chr4.3:27820257-27820276 | None:intergenic | 40.0% | |
| CCTCACTTATCATACTTGGA+GGG | + | chr4.3:27822431-27822450 | MS.gene56432:CDS | 40.0% | |
| CGACATTAGAAACCAAAGGT+AGG | - | chr4.3:27820260-27820279 | None:intergenic | 40.0% | |
| CGTGTTTACCACTTCGTTTA+CGG | - | chr4.3:27821307-27821326 | None:intergenic | 40.0% | |
| CTCACTTATCATACTTGGAG+GGG | + | chr4.3:27822432-27822451 | MS.gene56432:CDS | 40.0% | |
| GGTTTCCCTATTACTCTCAT+TGG | + | chr4.3:27822155-27822174 | MS.gene56432:CDS | 40.0% | |
| TAGTGCAACTGTTACTATGG+TGG | + | chr4.3:27819640-27819659 | MS.gene56432:CDS | 40.0% | |
| TCACATAAAGAGAAGGAGCA+AGG | + | chr4.3:27822382-27822401 | MS.gene56432:CDS | 40.0% | |
| TGAAGAAGATGTGTACCAAG+AGG | + | chr4.3:27821982-27822001 | MS.gene56432:CDS | 40.0% | |
| TGACTTGACGAATTTCTTGG+TGG | - | chr4.3:27819280-27819299 | None:intergenic | 40.0% | |
| TTCAGATTCTTCTTAGGGCT+TGG | + | chr4.3:27819503-27819522 | MS.gene56432:CDS | 40.0% | |
| TTCTCTTGAAAGAAGAGGGT+AGG | - | chr4.3:27821837-27821856 | None:intergenic | 40.0% | |
| TTCTTCTTAGGGCTTGGAAT+TGG | + | chr4.3:27819509-27819528 | MS.gene56432:CDS | 40.0% | |
| TTGGGCATCACATAAAGAGA+AGG | + | chr4.3:27822375-27822394 | MS.gene56432:CDS | 40.0% | |
| ! | AAGGTCTTTGGAAGAGAATG+AGG | + | chr4.3:27822507-27822526 | MS.gene56432:CDS | 40.0% |
| ! | AGCTCTCTTTGTTGTACAGA+TGG | - | chr4.3:27819459-27819478 | None:intergenic | 40.0% |
| ! | TTGACGAATTTCTTGGTGGT+CGG | - | chr4.3:27819276-27819295 | None:intergenic | 40.0% |
| !! | CTATGATGATGGCCTTGAAA+TGG | - | chr4.3:27819172-27819191 | None:intergenic | 40.0% |
| !! | GGTTGACTTGACGAATTTCT+TGG | - | chr4.3:27819283-27819302 | None:intergenic | 40.0% |
| !! | TGGTGGTAATGGATTCTCTT+CGG | - | chr4.3:27821801-27821820 | None:intergenic | 40.0% |
| !! | TGTTACTATGGTGGTTTGCT+TGG | + | chr4.3:27819649-27819668 | MS.gene56432:CDS | 40.0% |
| !!! | CTGCGGTTTTTTCTATGCAA+GGG | + | chr4.3:27819603-27819622 | MS.gene56432:CDS | 40.0% |
| AACTCTTTCCAGCTAGGTTC+AGG | + | chr4.3:27822284-27822303 | MS.gene56432:CDS | 45.0% | |
| AACTTAAACCGCATGACGCA+AGG | - | chr4.3:27821044-27821063 | None:intergenic | 45.0% | |
| ACAAAGCAAATCCACGTGGA+TGG | - | chr4.3:27821007-27821026 | None:intergenic | 45.0% | |
| AGAAACTACCTGGCAGTTTC+TGG | - | chr4.3:27819803-27819822 | None:intergenic | 45.0% | |
| AGACCTTCCCATAGTTTCCT+TGG | - | chr4.3:27822494-27822513 | None:intergenic | 45.0% | |
| AGAGAATTCTTGTGGCGACA+CGG | + | chr4.3:27821851-27821870 | MS.gene56432:CDS | 45.0% | |
| AGCAAACAGCAAGAATGGCT+TGG | - | chr4.3:27822027-27822046 | None:intergenic | 45.0% | |
| AGGAGCAAGGATATCCTAAG+GGG | + | chr4.3:27822395-27822414 | MS.gene56432:CDS | 45.0% | |
| AGGTTCAGGTCAACATGTCA+TGG | + | chr4.3:27822298-27822317 | MS.gene56432:CDS | 45.0% | |
| ATAGAAAGGAACCATCCACG+TGG | + | chr4.3:27820993-27821012 | MS.gene56432:intron | 45.0% | |
| CATCGATCAGTCCTTGTCTT+GGG | + | chr4.3:27820914-27820933 | MS.gene56432:intron | 45.0% | |
| CCCTCCAAGTATGATAAGTG+AGG | - | chr4.3:27822434-27822453 | None:intergenic | 45.0% | |
| CGTACTATGGTGTGTGCATT+AGG | + | chr4.3:27821693-27821712 | MS.gene56432:intron | 45.0% | |
| GAAGGAGCAAGGATATCCTA+AGG | + | chr4.3:27822393-27822412 | MS.gene56432:CDS | 45.0% | |
| GAGTTCAGCTGGGACAATAA+AGG | - | chr4.3:27822269-27822288 | None:intergenic | 45.0% | |
| GCAAACAAAGCAAATCCACG+TGG | - | chr4.3:27821011-27821030 | None:intergenic | 45.0% | |
| GCCATCATCATAGCAGGAAT+GGG | + | chr4.3:27819179-27819198 | MS.gene56432:CDS | 45.0% | |
| GCCTCACTTATCATACTTGG+AGG | + | chr4.3:27822430-27822449 | MS.gene56432:CDS | 45.0% | |
| GGAAACTATGGGAAGGTCTT+TGG | + | chr4.3:27822495-27822514 | MS.gene56432:CDS | 45.0% | |
| GGCTAGTGCAACTGTTACTA+TGG | + | chr4.3:27819637-27819656 | MS.gene56432:CDS | 45.0% | |
| GGCTCGACATTAGAAACCAA+AGG | - | chr4.3:27820264-27820283 | None:intergenic | 45.0% | |
| GGTAGAGCAAACAGCAAGAA+TGG | - | chr4.3:27822032-27822051 | None:intergenic | 45.0% | |
| GGTGCAATCATTGGATCTGT+AGG | + | chr4.3:27822346-27822365 | MS.gene56432:CDS | 45.0% | |
| GTTGCAAGCTGCAAAAGACA+TGG | + | chr4.3:27821742-27821761 | MS.gene56432:CDS | 45.0% | |
| GTTTGCTTGGTATTTCGCAG+CGG | + | chr4.3:27819662-27819681 | MS.gene56432:CDS | 45.0% | |
| TACGCGATCGATGAAGTAGA+CGG | - | chr4.3:27822074-27822093 | None:intergenic | 45.0% | |
| TAGCTGGAAAGAGTTCAGCT+GGG | - | chr4.3:27822279-27822298 | None:intergenic | 45.0% | |
| TCACCAAGGAAACTATGGGA+AGG | + | chr4.3:27822488-27822507 | MS.gene56432:CDS | 45.0% | |
| TCATCGATCAGTCCTTGTCT+TGG | + | chr4.3:27820913-27820932 | MS.gene56432:intron | 45.0% | |
| TCCCATTCCTGCTATGATGA+TGG | - | chr4.3:27819183-27819202 | None:intergenic | 45.0% | |
| TCGACATTGTCAGTTGCGTT+AGG | + | chr4.3:27821397-27821416 | MS.gene56432:intron | 45.0% | |
| TTACTTGAAGGCCCAAGACA+AGG | - | chr4.3:27820928-27820947 | None:intergenic | 45.0% | |
| TTCAAGGCCATCATCATAGC+AGG | + | chr4.3:27819173-27819192 | MS.gene56432:CDS | 45.0% | |
| TTCAGCTGGGACAATAAAGG+TGG | - | chr4.3:27822266-27822285 | None:intergenic | 45.0% | |
| TTCTTAGGGCTTGGAATTGG+TGG | + | chr4.3:27819512-27819531 | MS.gene56432:CDS | 45.0% | |
| TTGCAAGATGGAAAGCCTCT+TGG | - | chr4.3:27822000-27822019 | None:intergenic | 45.0% | |
| ! | AGCAGGAATGGGACTTTTCA+CGG | + | chr4.3:27819190-27819209 | MS.gene56432:CDS | 45.0% |
| ! | ATTTAAAGCGGGTGGAAGTG+AGG | + | chr4.3:27821186-27821205 | MS.gene56432:intron | 45.0% |
| ! | CTAACAAGCTCTCTAGCTTC+TGG | + | chr4.3:27819428-27819447 | MS.gene56432:CDS | 45.0% |
| ! | TGATGAGTGTGATGGAGAAG+AGG | - | chr4.3:27819226-27819245 | None:intergenic | 45.0% |
| ! | TGGCTTGGATTCTTGCAAGA+TGG | - | chr4.3:27822012-27822031 | None:intergenic | 45.0% |
| !! | GCATTTGTGGTTGGTGGTAA+TGG | - | chr4.3:27821812-27821831 | None:intergenic | 45.0% |
| !! | GGTAAGGTTGGTGCAATCAT+TGG | + | chr4.3:27822337-27822356 | MS.gene56432:CDS | 45.0% |
| !! | TATTTCTGGGGCTGTTGGTA+AGG | + | chr4.3:27822321-27822340 | MS.gene56432:CDS | 45.0% |
| !!! | GCTGCGGTTTTTTCTATGCA+AGG | + | chr4.3:27819602-27819621 | MS.gene56432:CDS | 45.0% |
| AAGAGGGTAGGCAGCATTTG+TGG | - | chr4.3:27821825-27821844 | None:intergenic | 50.0% | |
| ATAAGGCGATACCGTAGACG+TGG | - | chr4.3:27819400-27819419 | None:intergenic | 50.0% | |
| CAAGGATATCCTAAGGGGGT+TGG | + | chr4.3:27822400-27822419 | MS.gene56432:CDS | 50.0% | |
| CAGCTGAACTCTTTCCAGCT+AGG | + | chr4.3:27822278-27822297 | MS.gene56432:CDS | 50.0% | |
| CATGTTGACCTGAACCTAGC+TGG | - | chr4.3:27822295-27822314 | None:intergenic | 50.0% | |
| CTAGCTGGAAAGAGTTCAGC+TGG | - | chr4.3:27822280-27822299 | None:intergenic | 50.0% | |
| GCTGTTTGCTCTACCATTCC+CGG | + | chr4.3:27822037-27822056 | MS.gene56432:CDS | 50.0% | |
| GCTTTCATTCCAACCCCCTT+AGG | - | chr4.3:27822412-27822431 | None:intergenic | 50.0% | |
| GGAGCAAGGATATCCTAAGG+GGG | + | chr4.3:27822396-27822415 | MS.gene56432:CDS | 50.0% | |
| GGCCATCATCATAGCAGGAA+TGG | + | chr4.3:27819178-27819197 | MS.gene56432:CDS | 50.0% | |
| GTAGACGGTGAAGAAGTAGC+CGG | - | chr4.3:27822059-27822078 | None:intergenic | 50.0% | |
| GTCTACTTCATCGATCGCGT+AGG | + | chr4.3:27822073-27822092 | MS.gene56432:CDS | 50.0% | |
| TAGACGGTGAAGAAGTAGCC+GGG | - | chr4.3:27822058-27822077 | None:intergenic | 50.0% | |
| TAGGCAGCATTTGTGGTTGG+TGG | - | chr4.3:27821818-27821837 | None:intergenic | 50.0% | |
| ! | TAGGAGTGCAACGGAGACAA+GGG | - | chr4.3:27819321-27819340 | None:intergenic | 50.0% |
| ! | TGATGATGCCAGAAACTGCC+AGG | + | chr4.3:27819792-27819811 | MS.gene56432:CDS | 50.0% |
| !! | CATGGTATTTCTGGGGCTGT+TGG | + | chr4.3:27822316-27822335 | MS.gene56432:CDS | 50.0% |
| ACAAGGGCTGAGACAACGAC+CGG | - | chr4.3:27819305-27819324 | None:intergenic | 55.0% | |
| ATTTCGCAGCGGTTCGAAGC+CGG | + | chr4.3:27819673-27819692 | MS.gene56432:CDS | 55.0% | |
| CTTGTCTCCGTTGCACTCCT+AGG | + | chr4.3:27819320-27819339 | MS.gene56432:CDS | 55.0% | |
| GAATAGGAGCTGACCGAAGG+CGG | - | chr4.3:27819348-27819367 | None:intergenic | 55.0% | |
| GAGAGGGGCAAGAAACTACC+TGG | - | chr4.3:27819813-27819832 | None:intergenic | 55.0% | |
| GCCTTCGGTCAGCTCCTATT+CGG | + | chr4.3:27819347-27819366 | MS.gene56432:CDS | 55.0% | |
| GGCACATCAAAAGCCGTCTC+CGG | - | chr4.3:27819695-27819714 | None:intergenic | 55.0% | |
| GGGTAGGCAGCATTTGTGGT+TGG | - | chr4.3:27821821-27821840 | None:intergenic | 55.0% | |
| GGTGAAGAAGTAGCCGGGAA+TGG | - | chr4.3:27822053-27822072 | None:intergenic | 55.0% | |
| TCCGAATAGGAGCTGACCGA+AGG | - | chr4.3:27819351-27819370 | None:intergenic | 55.0% | |
| ! | ACTTGGAGGGGTGTGCATAG+TGG | + | chr4.3:27822444-27822463 | MS.gene56432:CDS | 55.0% |
| ! | CTAGGAGTGCAACGGAGACA+AGG | - | chr4.3:27819322-27819341 | None:intergenic | 55.0% |
| ! | CTTGGAGGGGTGTGCATAGT+GGG | + | chr4.3:27822445-27822464 | MS.gene56432:CDS | 55.0% |
| ! | TCTGGGGCTGTTGGTAAGGT+TGG | + | chr4.3:27822325-27822344 | MS.gene56432:CDS | 55.0% |
| AAAGGCCGACGCCACGTCTA+CGG | + | chr4.3:27819386-27819405 | MS.gene56432:CDS | 60.0% | |
| CAAGGGCTGAGACAACGACC+GGG | - | chr4.3:27819304-27819323 | None:intergenic | 60.0% | |
| CAGCTCCTATTCGGACGCCT+CGG | + | chr4.3:27819356-27819375 | MS.gene56432:CDS | 60.0% | |
| CGATACCGTAGACGTGGCGT+CGG | - | chr4.3:27819394-27819413 | None:intergenic | 60.0% | |
| CTCCATGCAACGTCAGCCTC+CGG | - | chr4.3:27819719-27819738 | None:intergenic | 60.0% | |
| GCACTCCTAGGAACCGCCTT+CGG | + | chr4.3:27819332-27819351 | MS.gene56432:CDS | 60.0% | |
| GGACGCCTCGGAGACCTAAA+AGG | + | chr4.3:27819368-27819387 | MS.gene56432:CDS | 60.0% | |
| ! | GACGGCTTTTGATGTGCCGC+CGG | + | chr4.3:27819697-27819716 | MS.gene56432:CDS | 60.0% |
| ! | GGCGGTTCCTAGGAGTGCAA+CGG | - | chr4.3:27819330-27819349 | None:intergenic | 60.0% |
| !! | GTCGGCCTTTTAGGTCTCCG+AGG | - | chr4.3:27819376-27819395 | None:intergenic | 60.0% |
| !!! | AGACGTGGCGTCGGCCTTTT+AGG | - | chr4.3:27819385-27819404 | None:intergenic | 60.0% |
| CAGCGGTTCGAAGCCGGAGA+CGG | + | chr4.3:27819679-27819698 | MS.gene56432:CDS | 65.0% | |
| CATGCAACGTCAGCCTCCGG+CGG | - | chr4.3:27819716-27819735 | None:intergenic | 65.0% | |
| CGGAGGCTGACGTTGCATGG+AGG | + | chr4.3:27819717-27819736 | MS.gene56432:CDS | 65.0% | |
| GCTGACCGAAGGCGGTTCCT+AGG | - | chr4.3:27819340-27819359 | None:intergenic | 65.0% | |
| ! | GGCTTTTGATGTGCCGCCGG+AGG | + | chr4.3:27819700-27819719 | MS.gene56432:CDS | 65.0% |
| ! | GGTCTCCGAGGCGTCCGAAT+AGG | - | chr4.3:27819364-27819383 | None:intergenic | 65.0% |
| CGCCGGAGGCTGACGTTGCA+TGG | + | chr4.3:27819714-27819733 | MS.gene56432:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27819113 | 27822570 | 27819113 | ID=MS.gene56432 |
| chr4.3 | mRNA | 27819113 | 27822570 | 27819113 | ID=MS.gene56432.t1;Parent=MS.gene56432 |
| chr4.3 | exon | 27819113 | 27819813 | 27819113 | ID=MS.gene56432.t1.exon1;Parent=MS.gene56432.t1 |
| chr4.3 | CDS | 27819113 | 27819813 | 27819113 | ID=cds.MS.gene56432.t1;Parent=MS.gene56432.t1 |
| chr4.3 | exon | 27821715 | 27822570 | 27821715 | ID=MS.gene56432.t1.exon2;Parent=MS.gene56432.t1 |
| chr4.3 | CDS | 27821715 | 27822570 | 27821715 | ID=cds.MS.gene56432.t1;Parent=MS.gene56432.t1 |
| Gene Sequence |
| Protein sequence |
