AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018708


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018708.t1 MTR_7g096870 97.575 536 13 0 1 536 1 536 0.0 1084
MS.gene018708.t1 MTR_7g096880 90.637 534 48 1 1 534 1 532 0.0 962
MS.gene018708.t1 MTR_1g069935 85.356 519 76 0 1 519 1 519 0.0 941
MS.gene018708.t1 MTR_3g082700 75.741 540 128 1 1 537 1 540 0.0 837
MS.gene018708.t1 MTR_1g069930 75.340 515 126 1 1 514 1 515 0.0 835
MS.gene018708.t1 MTR_1g074930 76.834 518 116 2 5 518 4 521 0.0 833
MS.gene018708.t1 MTR_1g043220 75.376 532 127 2 5 532 4 535 0.0 822
MS.gene018708.t1 MTR_1g043200 76.281 527 119 3 5 527 4 528 0.0 817
MS.gene018708.t1 MTR_1g074940 76.654 514 100 4 1 508 1 500 0.0 813
MS.gene018708.t1 MTR_1g043290 75.475 526 125 2 5 526 4 529 0.0 812
MS.gene018708.t1 MTR_1g028600 61.089 514 188 3 6 518 3 505 0.0 634
MS.gene018708.t1 MTR_5g068140 57.537 544 203 4 8 532 7 541 0.0 619
MS.gene018708.t1 MTR_4g083960 51.866 536 227 12 6 534 5 516 0.0 518
MS.gene018708.t1 MTR_3g084110 21.875 448 288 15 76 512 76 472 1.80e-13 73.2
MS.gene018708.t1 MTR_7g446340 23.340 467 293 17 76 527 104 520 3.33e-12 69.3
MS.gene018708.t1 MTR_6g007340 23.340 467 293 17 76 527 104 520 3.33e-12 69.3
MS.gene018708.t1 MTR_6g088450 25.564 399 245 12 81 463 108 470 4.93e-12 68.6
MS.gene018708.t1 MTR_1g116660 21.429 434 277 14 90 511 97 478 5.07e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018708.t1 AT2G38940 85.078 516 74 1 1 513 1 516 0.0 928
MS.gene018708.t1 AT3G54700 84.556 518 79 1 1 518 1 517 0.0 926
MS.gene018708.t1 AT3G54700 84.556 518 79 1 1 518 1 517 0.0 926
MS.gene018708.t1 AT2G32830 74.122 541 136 1 1 537 1 541 0.0 853
MS.gene018708.t1 AT5G43360 78.077 520 112 1 1 518 1 520 0.0 839
MS.gene018708.t1 AT5G43350 77.992 518 112 1 1 516 1 518 0.0 837
MS.gene018708.t1 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 808
MS.gene018708.t1 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 808
MS.gene018708.t1 AT5G43340 67.181 518 155 2 3 518 4 508 0.0 737
MS.gene018708.t1 AT1G20860 48.972 535 255 9 6 533 3 526 7.72e-174 501
MS.gene018708.t1 AT1G76430 47.858 537 251 11 5 528 3 523 1.67e-173 501
MS.gene018708.t1 AT1G20860 48.972 535 255 9 6 533 55 578 4.69e-173 501
MS.gene018708.t1 AT4G08878 68.487 238 75 0 31 268 13 250 3.50e-115 342
MS.gene018708.t1 AT4G08895 55.944 143 31 1 318 460 23 133 5.96e-47 161
MS.gene018708.t1 AT2G43330 22.748 444 260 17 90 511 93 475 2.02e-11 67.0

Find 140 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTCTTTGCAAATTT+TGG -0.031518 7.1:-10946351 MS.gene018708:CDS
GCTTTCTGTGGAACACTTTC+AGG 0.108694 7.1:-10947350 MS.gene018708:CDS
CCCTTTGCTTCTTCCGGTTT+TGG 0.142326 7.1:-10947193 MS.gene018708:CDS
TATCCTTCTGGAAGAGATTT+TGG 0.150755 7.1:+10946646 None:intergenic
CATGCAGGGTTTCGGAATTT+TGG 0.151969 7.1:-10947069 MS.gene018708:CDS
GTTGGGATGTTGTAACATTT+TGG 0.179506 7.1:-10946124 MS.gene018708:CDS
TGCATTCGGGTTCTTGTATT+TGG 0.192044 7.1:-10946220 MS.gene018708:CDS
GCGGTATAACGAGCAGTTTC+TGG 0.246126 7.1:+10946870 None:intergenic
GTTATCTGTTCAATTGGTTC+TGG 0.268162 7.1:-10947254 MS.gene018708:CDS
AGGGTTGTCATGACAGATTT+TGG 0.291172 7.1:+10947212 None:intergenic
GGGGCTATAGTTGGTGCATT+CGG 0.293505 7.1:-10946234 MS.gene018708:CDS
ATTGGTTCTGGTCTTTCTTT+CGG 0.310334 7.1:-10947242 MS.gene018708:CDS
AACCTCCTCAAGTGCATTCA+TGG 0.318200 7.1:+10946587 None:intergenic
TGACAACCCTTTGCTTCTTC+CGG 0.331448 7.1:-10947199 MS.gene018708:CDS
ATTAGAATACTCCGACATTA+TGG 0.331666 7.1:+10947130 None:intergenic
CTTCTCCTCTTTCTGTGGTT+CGG 0.335668 7.1:+10946779 None:intergenic
CATAATTTCATCTGCATTCA+AGG 0.338184 7.1:-10947027 MS.gene018708:CDS
GTCTTTGCCATGCAGGGTTT+CGG 0.339550 7.1:-10947077 MS.gene018708:CDS
GGGCTATAGTTGGTGCATTC+GGG 0.341772 7.1:-10946233 MS.gene018708:CDS
TTGCGCTGAAAATATCCTTC+TGG 0.369813 7.1:+10946634 None:intergenic
TTCCCCAAGCAGACTACATT+TGG 0.372520 7.1:-10946956 MS.gene018708:CDS
CCTCCAAATGTAGTCTGCTT+GGG 0.372673 7.1:+10946953 None:intergenic
GCAGTACAGTACCAGGCTAT+TGG 0.376413 7.1:-10946527 MS.gene018708:CDS
AAGATTTACCATCCAATTGA+TGG 0.386978 7.1:-10946475 MS.gene018708:CDS
TGGTGGTGACTACCCTCTTT+CGG 0.394304 7.1:-10947156 MS.gene018708:CDS
TGCAGCAGTCTTTGCCATGC+AGG 0.397867 7.1:-10947084 MS.gene018708:CDS
ACAACAAATGTTGTAGCATT+AGG 0.400761 7.1:+10946327 None:intergenic
CGTCATGGACTACATTTACT+TGG 0.401161 7.1:-10946711 MS.gene018708:CDS
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7.1:+10946463 None:intergenic
CATCCGCATCGGGAAAGCTT+GGG 0.403184 7.1:-10946254 MS.gene018708:CDS
TAGCACCTCAATTTGATCCT+TGG 0.413690 7.1:+10947574 None:intergenic
TCCTCCAAATGTAGTCTGCT+TGG 0.420387 7.1:+10946952 None:intergenic
CGCATATACTACCACGTTGA+TGG 0.426932 7.1:-10947428 MS.gene018708:CDS
TACCGAACCCAAGCCAAAAC+CGG 0.427494 7.1:+10947180 None:intergenic
TGGCTGGCTTGGTGATAAGA+TGG 0.431799 7.1:-10947315 MS.gene018708:CDS
GGTGAGAATGATGAGGAAGT+TGG 0.432793 7.1:-10946042 MS.gene018708:CDS
GGCAAATGGAAAATCTTTAG+AGG 0.436138 7.1:-10946073 MS.gene018708:CDS
GCAGGGTACCCTGCAGGTAT+TGG 0.442599 7.1:-10946168 MS.gene018708:CDS
ATGATGGTTATCTGTTCAAT+TGG 0.447387 7.1:-10947260 MS.gene018708:CDS
GGCAAAGACTGCTGCAATGA+AGG 0.448745 7.1:+10947091 None:intergenic
TGCAATCATCATAGCTGGTA+TGG 0.448896 7.1:-10947510 MS.gene018708:CDS
AGCTGCAGCAGATATGTCTA+AGG 0.462417 7.1:-10946823 MS.gene018708:CDS
TTATGAGTCCAGTGTTCATA+AGG 0.464297 7.1:+10946411 None:intergenic
GGCTGGCTTGGTGATAAGAT+GGG 0.464364 7.1:-10947314 MS.gene018708:CDS
TCATCCGCATCGGGAAAGCT+TGG 0.465982 7.1:-10946255 MS.gene018708:CDS
GACAAGAGTAAAGCAGATGC+AGG 0.466575 7.1:-10946186 MS.gene018708:CDS
AAGGAAAAGGCTAAATCATA+TGG 0.468204 7.1:-10946759 MS.gene018708:CDS
GAGTAGTAAGTCATTGCAGC+TGG 0.469391 7.1:+10946906 None:intergenic
TGGGGAACAGTTGAACCAAC+TGG 0.470918 7.1:+10946972 None:intergenic
ACATCACCACAAATCCTATT+CGG 0.472436 7.1:+10946382 None:intergenic
ATTCACAGCAGCTGATACAT+TGG 0.472564 7.1:+10947379 None:intergenic
TTCTTAGTACCCGAGGCAAA+TGG 0.472965 7.1:-10946087 MS.gene018708:CDS
ACTCATAAGGATAACCGAAT+AGG 0.475963 7.1:-10946396 MS.gene018708:CDS
CTTTCTGTGGAACACTTTCA+GGG 0.477760 7.1:-10947349 MS.gene018708:CDS
CAAGTTGATCGGAATCTAGC+TGG 0.478361 7.1:+10946288 None:intergenic
TGAAGCCGAACCACAGAAAG+AGG 0.480495 7.1:-10946784 MS.gene018708:CDS
GACATTATGGTAGCCGAAAG+AGG 0.481182 7.1:+10947143 None:intergenic
TTTCATCTGCATTCAAGGCC+AGG 0.481632 7.1:-10947022 MS.gene018708:CDS
TGGCTTGGGTTCGGTATTGG+TGG 0.492801 7.1:-10947173 MS.gene018708:CDS
TCCCTTGTTACCAAGTTGCT+CGG 0.496149 7.1:-10947452 MS.gene018708:CDS
CTTGTATTTGGCACAAAACA+AGG 0.497426 7.1:-10946208 MS.gene018708:CDS
TTATGAACACTGGACTCATA+AGG 0.499390 7.1:-10946409 MS.gene018708:CDS
CCCAAAATTTGCAAAGAAGA+AGG 0.507277 7.1:+10946350 None:intergenic
TACATTGGGAGGCAATGTAC+CGG 0.509415 7.1:+10947394 None:intergenic
GTTGATGGTGCAGCGAAGCC+CGG 0.509611 7.1:-10947413 MS.gene018708:CDS
CCCAAGCAGACTACATTTGG+AGG 0.513096 7.1:-10946953 MS.gene018708:CDS
GGAAAGCTTGGGGCTATAGT+TGG 0.514607 7.1:-10946243 MS.gene018708:CDS
GCAGCAGTCTTTGCCATGCA+GGG 0.514618 7.1:-10947083 MS.gene018708:CDS
AGATTTACCATCCAATTGAT+GGG 0.514693 7.1:-10946474 MS.gene018708:CDS
TTCACTGCAATCATCATAGC+TGG 0.515551 7.1:-10947515 MS.gene018708:CDS
ACAGAAAGAGGAGAAGGAAA+AGG 0.518948 7.1:-10946772 MS.gene018708:CDS
GGATAACCGAATAGGATTTG+TGG 0.523531 7.1:-10946388 MS.gene018708:CDS
CATGGAATATCATCCGCATC+GGG 0.524513 7.1:-10946264 MS.gene018708:CDS
GGCTTGGTGATAAGATGGGC+AGG 0.528400 7.1:-10947310 MS.gene018708:CDS
GCCAAAACCGGAAGAAGCAA+AGG 0.528845 7.1:+10947192 None:intergenic
CTATGATGATTGCAGTGAAA+TGG 0.528943 7.1:+10947519 None:intergenic
TTCTTCATACCAATACCTGC+AGG 0.529263 7.1:+10946159 None:intergenic
CGAACCACAGAAAGAGGAGA+AGG 0.530308 7.1:-10946778 MS.gene018708:CDS
TTCACAGCAGCTGATACATT+GGG 0.530334 7.1:+10947380 None:intergenic
GTGGCTTTCATAGACAGAAT+AGG 0.532759 7.1:-10946498 MS.gene018708:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.539877 7.1:+10946597 None:intergenic
AATGTATCAGCTGCTGTGAA+TGG 0.543645 7.1:-10947377 MS.gene018708:CDS
GCAGATGCAGGGTACCCTGC+AGG 0.546146 7.1:-10946174 MS.gene018708:CDS
GGCTTGAACAGTCATGGCCA+AGG 0.546875 7.1:-10947591 None:intergenic
GCATTCATGGTTTGTGCAGG+TGG 0.550880 7.1:+10946600 None:intergenic
GTGAATGGTGTAGCTTTCTG+TGG 0.554704 7.1:-10947362 MS.gene018708:CDS
ATATTCCATGGCAAGTTGAT+CGG 0.556932 7.1:+10946277 None:intergenic
AAATCTTTAGAGGAAATGTC+AGG 0.557207 7.1:-10946063 MS.gene018708:CDS
TTGCCATTCCTTATGAACAC+TGG 0.558026 7.1:-10946419 MS.gene018708:CDS
TACTTGGTACAACAAGCACT+TGG 0.559616 7.1:-10946695 MS.gene018708:CDS
CCATGGAATATCATCCGCAT+CGG 0.559707 7.1:-10946265 MS.gene018708:CDS
TCTTACGAGGTTGATCCAGT+TGG 0.560435 7.1:-10946987 MS.gene018708:CDS
TGGAGGATAATTGTGATGGT+AGG 0.563401 7.1:-10946936 MS.gene018708:CDS
AGTCCAGTGTTCATAAGGAA+TGG 0.563480 7.1:+10946416 None:intergenic
GACCGAGCAACTTGGTAACA+AGG 0.566465 7.1:+10947450 None:intergenic
GCAATCATCATAGCTGGTAT+GGG 0.570874 7.1:-10947509 MS.gene018708:CDS
AGATTCCGATCAACTTGCCA+TGG 0.572833 7.1:-10946282 MS.gene018708:CDS
GAAGAATCCCATCAATTGGA+TGG 0.573451 7.1:+10946467 None:intergenic
ACATTGGGAGGCAATGTACC+GGG 0.578245 7.1:+10947395 None:intergenic
TAGCCAAAATCTCTTCCAGA+AGG 0.581352 7.1:-10946649 MS.gene018708:CDS
GCCACGGTAAACCAATAGCC+TGG 0.581737 7.1:+10946516 None:intergenic
GCTCTATGCAGTACAGTACC+AGG 0.583363 7.1:-10946534 MS.gene018708:CDS
AAAGAGTTCATGAGTCGTCA+TGG 0.583437 7.1:-10946726 MS.gene018708:CDS
TGGTATGACCCTCATGATGA+TGG 0.586953 7.1:-10947276 MS.gene018708:CDS
AACCATGAATGCACTTGAGG+AGG 0.589777 7.1:-10946589 MS.gene018708:CDS
CCGATGCGGATGATATTCCA+TGG 0.591183 7.1:+10946265 None:intergenic
CCAAAACCGGAAGAAGCAAA+GGG 0.592671 7.1:+10947193 None:intergenic
CATGGCCAAGGATCAAATTG+AGG 0.593116 7.1:-10947579 MS.gene018708:CDS
AGCCCCAAGCTTTCCCGATG+CGG 0.596062 7.1:+10946251 None:intergenic
CTCCAAATGTAGTCTGCTTG+GGG 0.596396 7.1:+10946954 None:intergenic
ATCCGCATCGGGAAAGCTTG+GGG 0.597584 7.1:-10946253 MS.gene018708:CDS
AATGTCAGGTGAGAATGATG+AGG 0.605492 7.1:-10946049 MS.gene018708:CDS
CATTTGGAGGATAATTGTGA+TGG 0.611828 7.1:-10946940 MS.gene018708:CDS
GCGTTGTTATTCTGAGCATG+AGG 0.612504 7.1:+10945997 None:intergenic
GTTTGATTCTCCGTCTTACG+AGG 0.613183 7.1:-10947000 MS.gene018708:CDS
ACTGGATCAACCTCGTAAGA+CGG 0.613448 7.1:+10946990 None:intergenic
ACAAACCATGAATGCACTTG+AGG 0.613620 7.1:-10946592 MS.gene018708:CDS
AGTAGTAAGTCATTGCAGCT+GGG 0.615517 7.1:+10946907 None:intergenic
AACAGATAACCATCATCATG+AGG 0.618082 7.1:+10947267 None:intergenic
GTATATGCGACCGAGCAACT+TGG 0.619928 7.1:+10947442 None:intergenic
ACATTATGGTAGCCGAAAGA+GGG 0.623125 7.1:+10947144 None:intergenic
ACCAGGCTATTGGTTTACCG+TGG 0.630346 7.1:-10946517 MS.gene018708:CDS
TATTCTGTCTATGAAAGCCA+CGG 0.630634 7.1:+10946500 None:intergenic
GGTGCTAAATGCGCTTGATG+TGG 0.631666 7.1:-10947558 MS.gene018708:CDS
ATTTGCAAAGAAGAAGGTCA+AGG 0.633508 7.1:+10946356 None:intergenic
GTGCACTTTCTTAGTACCCG+AGG 0.637975 7.1:-10946094 MS.gene018708:CDS
AATGGCAAGAGCAAACATGA+AGG 0.639251 7.1:+10946434 None:intergenic
CAAAATTCCGAAACCCTGCA+TGG 0.639934 7.1:+10947070 None:intergenic
ACAGCAGCTGATACATTGGG+AGG 0.653095 7.1:+10947383 None:intergenic
ACCGAGCAACTTGGTAACAA+GGG 0.653584 7.1:+10947451 None:intergenic
ACAAGAGTAAAGCAGATGCA+GGG 0.657371 7.1:-10946185 MS.gene018708:CDS
TCTTTCGGCTACCATAATGT+CGG 0.663564 7.1:-10947141 MS.gene018708:CDS
GTAAGACGGAGAATCAAACC+TGG 0.669834 7.1:+10947004 None:intergenic
CTGCAATGACTTACTACTCG+CGG 0.671835 7.1:-10946902 MS.gene018708:CDS
GGCAAGAGCAAACATGAAGG+CGG 0.671889 7.1:+10946437 None:intergenic
ACAGATAACCATCATCATGA+GGG 0.673555 7.1:+10947268 None:intergenic
TCTTCATACCAATACCTGCA+GGG 0.687460 7.1:+10946160 None:intergenic
TGTGTTCTTAGCAACTAAAG+CGG 0.693409 7.1:+10946851 None:intergenic
TTGATGTGGCTAAAACACAA+TGG 0.704796 7.1:-10947544 MS.gene018708:CDS
GCTTCGCTGCACCATCAACG+TGG 0.716385 7.1:+10947417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATTCATTGATTTTGTT+GGG - chr7.1:10947424-10947443 MS.gene018708:CDS 20.0%
! ATTCTAATAAAAAGACTCGT+GGG - chr7.1:10946450-10946469 MS.gene018708:CDS 25.0%
! TATTCTAATAAAAAGACTCG+TGG - chr7.1:10946449-10946468 MS.gene018708:CDS 25.0%
!!! GAAGAATTCATTGATTTTGT+TGG - chr7.1:10947423-10947442 MS.gene018708:CDS 25.0%
AAGATTTACCATCCAATTGA+TGG - chr7.1:10947090-10947109 MS.gene018708:CDS 30.0%
AAGGAAAAGGCTAAATCATA+TGG - chr7.1:10946806-10946825 MS.gene018708:CDS 30.0%
ACAACAAATGTTGTAGCATT+AGG + chr7.1:10947241-10947260 None:intergenic 30.0%
AGATTTACCATCCAATTGAT+GGG - chr7.1:10947091-10947110 MS.gene018708:CDS 30.0%
ATGATGGTTATCTGTTCAAT+TGG - chr7.1:10946305-10946324 MS.gene018708:CDS 30.0%
ATTAGAATACTCCGACATTA+TGG + chr7.1:10946438-10946457 None:intergenic 30.0%
CATAATTTCATCTGCATTCA+AGG - chr7.1:10946538-10946557 MS.gene018708:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG + chr7.1:10947105-10947124 None:intergenic 30.0%
TTCTAATAAAAAGACTCGTG+GGG - chr7.1:10946451-10946470 MS.gene018708:CDS 30.0%
! AAATCTTTAGAGGAAATGTC+AGG - chr7.1:10947502-10947521 MS.gene018708:CDS 30.0%
! ACCTTCTTCTTTGCAAATTT+TGG - chr7.1:10947214-10947233 MS.gene018708:CDS 30.0%
! CCTTCTTCTTTGCAAATTTT+GGG - chr7.1:10947215-10947234 MS.gene018708:CDS 30.0%
! TAAAGATTTTCCATTTGCCT+CGG + chr7.1:10947491-10947510 None:intergenic 30.0%
! TTGGGATGTTGTAACATTTT+GGG - chr7.1:10947442-10947461 MS.gene018708:CDS 30.0%
AACAGATAACCATCATCATG+AGG + chr7.1:10946301-10946320 None:intergenic 35.0%
ACAGATAACCATCATCATGA+GGG + chr7.1:10946300-10946319 None:intergenic 35.0%
ACATCACCACAAATCCTATT+CGG + chr7.1:10947186-10947205 None:intergenic 35.0%
ACTCATAAGGATAACCGAAT+AGG - chr7.1:10947169-10947188 MS.gene018708:CDS 35.0%
ATTTGCAAAGAAGAAGGTCA+AGG + chr7.1:10947212-10947231 None:intergenic 35.0%
CATTTGGAGGATAATTGTGA+TGG - chr7.1:10946625-10946644 MS.gene018708:CDS 35.0%
CCCAAAATTTGCAAAGAAGA+AGG + chr7.1:10947218-10947237 None:intergenic 35.0%
CTATGATGATTGCAGTGAAA+TGG + chr7.1:10946049-10946068 None:intergenic 35.0%
CTTGTATTTGGCACAAAACA+AGG - chr7.1:10947357-10947376 MS.gene018708:CDS 35.0%
GGCAAATGGAAAATCTTTAG+AGG - chr7.1:10947492-10947511 MS.gene018708:CDS 35.0%
TATTCTGTCTATGAAAGCCA+CGG + chr7.1:10947068-10947087 None:intergenic 35.0%
TGTGTTCTTAGCAACTAAAG+CGG + chr7.1:10946717-10946736 None:intergenic 35.0%
TTATGAACACTGGACTCATA+AGG - chr7.1:10947156-10947175 MS.gene018708:CDS 35.0%
TTATGAGTCCAGTGTTCATA+AGG + chr7.1:10947157-10947176 None:intergenic 35.0%
TTGATGTGGCTAAAACACAA+TGG - chr7.1:10946021-10946040 MS.gene018708:CDS 35.0%
! AAAGATTTTCCATTTGCCTC+GGG + chr7.1:10947490-10947509 None:intergenic 35.0%
! AAGGATATTTTCAGCGCAAT+TGG - chr7.1:10946935-10946954 MS.gene018708:CDS 35.0%
! ATATTTTCAGCGCAATTGGT+TGG - chr7.1:10946939-10946958 MS.gene018708:CDS 35.0%
! GTTATCTGTTCAATTGGTTC+TGG - chr7.1:10946311-10946330 MS.gene018708:CDS 35.0%
! GTTGGGATGTTGTAACATTT+TGG - chr7.1:10947441-10947460 MS.gene018708:CDS 35.0%
! TGGGATGTTGTAACATTTTG+GGG - chr7.1:10947443-10947462 MS.gene018708:CDS 35.0%
!! AGATATGTCTAAGGTTTTGC+AGG - chr7.1:10946751-10946770 MS.gene018708:CDS 35.0%
!! ATATTCCATGGCAAGTTGAT+CGG + chr7.1:10947291-10947310 None:intergenic 35.0%
!! ATTGGTTCTGGTCTTTCTTT+CGG - chr7.1:10946323-10946342 MS.gene018708:CDS 35.0%
!! TATCCTTCTGGAAGAGATTT+TGG + chr7.1:10946922-10946941 None:intergenic 35.0%
AAAGAGTTCATGAGTCGTCA+TGG - chr7.1:10946839-10946858 MS.gene018708:CDS 40.0%
AATGGCAAGAGCAAACATGA+AGG + chr7.1:10947134-10947153 None:intergenic 40.0%
AATGTATCAGCTGCTGTGAA+TGG - chr7.1:10946188-10946207 MS.gene018708:CDS 40.0%
AATGTCAGGTGAGAATGATG+AGG - chr7.1:10947516-10947535 MS.gene018708:CDS 40.0%
ACAAACCATGAATGCACTTG+AGG - chr7.1:10946973-10946992 MS.gene018708:CDS 40.0%
ACAAGAGTAAAGCAGATGCA+GGG - chr7.1:10947380-10947399 MS.gene018708:CDS 40.0%
ACAGAAAGAGGAGAAGGAAA+AGG - chr7.1:10946793-10946812 MS.gene018708:CDS 40.0%
ACATTATGGTAGCCGAAAGA+GGG + chr7.1:10946424-10946443 None:intergenic 40.0%
AGTAGTAAGTCATTGCAGCT+GGG + chr7.1:10946661-10946680 None:intergenic 40.0%
AGTCCAGTGTTCATAAGGAA+TGG + chr7.1:10947152-10947171 None:intergenic 40.0%
ATGGGCAGGAAAAAAGTCTA+TGG - chr7.1:10946269-10946288 MS.gene018708:CDS 40.0%
ATTCACAGCAGCTGATACAT+TGG + chr7.1:10946189-10946208 None:intergenic 40.0%
CTTTCTGTGGAACACTTTCA+GGG - chr7.1:10946216-10946235 MS.gene018708:CDS 40.0%
GAAGAATCCCATCAATTGGA+TGG + chr7.1:10947101-10947120 None:intergenic 40.0%
GCAATCATCATAGCTGGTAT+GGG - chr7.1:10946056-10946075 MS.gene018708:CDS 40.0%
GGATAACCGAATAGGATTTG+TGG - chr7.1:10947177-10947196 MS.gene018708:CDS 40.0%
GTGGCTTTCATAGACAGAAT+AGG - chr7.1:10947067-10947086 MS.gene018708:CDS 40.0%
TACTTGGTACAACAAGCACT+TGG - chr7.1:10946870-10946889 MS.gene018708:CDS 40.0%
TAGCACCTCAATTTGATCCT+TGG + chr7.1:10945994-10946013 None:intergenic 40.0%
TAGCCAAAATCTCTTCCAGA+AGG - chr7.1:10946916-10946935 MS.gene018708:CDS 40.0%
TCTTCATACCAATACCTGCA+GGG + chr7.1:10947408-10947427 None:intergenic 40.0%
TCTTTCGGCTACCATAATGT+CGG - chr7.1:10946424-10946443 MS.gene018708:CDS 40.0%
TGCAATCATCATAGCTGGTA+TGG - chr7.1:10946055-10946074 MS.gene018708:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG - chr7.1:10946629-10946648 MS.gene018708:CDS 40.0%
TTCACAGCAGCTGATACATT+GGG + chr7.1:10946188-10946207 None:intergenic 40.0%
TTCACTGCAATCATCATAGC+TGG - chr7.1:10946050-10946069 MS.gene018708:CDS 40.0%
TTCTTCATACCAATACCTGC+AGG + chr7.1:10947409-10947428 None:intergenic 40.0%
TTGCCATTCCTTATGAACAC+TGG - chr7.1:10947146-10947165 MS.gene018708:CDS 40.0%
TTGCGCTGAAAATATCCTTC+TGG + chr7.1:10946934-10946953 None:intergenic 40.0%
! AGGGTTGTCATGACAGATTT+TGG + chr7.1:10946356-10946375 None:intergenic 40.0%
! ATGCAGGGTTTCGGAATTTT+GGG - chr7.1:10946497-10946516 MS.gene018708:CDS 40.0%
! CGTCATGGACTACATTTACT+TGG - chr7.1:10946854-10946873 MS.gene018708:CDS 40.0%
! CTTTCAGGGCAACTTTTCTT+TGG - chr7.1:10946230-10946249 MS.gene018708:CDS 40.0%
! TGCATTCGGGTTCTTGTATT+TGG - chr7.1:10947345-10947364 MS.gene018708:CDS 40.0%
! TTTTCCTTCTCCTCTTTCTG+TGG + chr7.1:10946794-10946813 None:intergenic 40.0%
AACCATGAATGCACTTGAGG+AGG - chr7.1:10946976-10946995 MS.gene018708:CDS 45.0%
AACCTCCTCAAGTGCATTCA+TGG + chr7.1:10946981-10947000 None:intergenic 45.0%
ACTGGATCAACCTCGTAAGA+CGG + chr7.1:10946578-10946597 None:intergenic 45.0%
AGATTCCGATCAACTTGCCA+TGG - chr7.1:10947283-10947302 MS.gene018708:CDS 45.0%
AGCTGCAGCAGATATGTCTA+AGG - chr7.1:10946742-10946761 MS.gene018708:CDS 45.0%
CAAAATTCCGAAACCCTGCA+TGG + chr7.1:10946498-10946517 None:intergenic 45.0%
CATGGAATATCATCCGCATC+GGG - chr7.1:10947301-10947320 MS.gene018708:CDS 45.0%
CCAAAACCGGAAGAAGCAAA+GGG + chr7.1:10946375-10946394 None:intergenic 45.0%
CCATGGAATATCATCCGCAT+CGG - chr7.1:10947300-10947319 MS.gene018708:CDS 45.0%
CCTCCAAATGTAGTCTGCTT+GGG + chr7.1:10946615-10946634 None:intergenic 45.0%
CGCATATACTACCACGTTGA+TGG - chr7.1:10946137-10946156 MS.gene018708:CDS 45.0%
CTAGCTGGAAAAATCTCTGC+TGG + chr7.1:10947265-10947284 None:intergenic 45.0%
CTCCAAATGTAGTCTGCTTG+GGG + chr7.1:10946614-10946633 None:intergenic 45.0%
CTGCAATGACTTACTACTCG+CGG - chr7.1:10946663-10946682 MS.gene018708:CDS 45.0%
CTTCTCCTCTTTCTGTGGTT+CGG + chr7.1:10946789-10946808 None:intergenic 45.0%
GACAAGAGTAAAGCAGATGC+AGG - chr7.1:10947379-10947398 MS.gene018708:CDS 45.0%
GACATTATGGTAGCCGAAAG+AGG + chr7.1:10946425-10946444 None:intergenic 45.0%
GAGTAGTAAGTCATTGCAGC+TGG + chr7.1:10946662-10946681 None:intergenic 45.0%
GCTTTCTGTGGAACACTTTC+AGG - chr7.1:10946215-10946234 MS.gene018708:CDS 45.0%
GGTGAGAATGATGAGGAAGT+TGG - chr7.1:10947523-10947542 MS.gene018708:CDS 45.0%
GTAAGACGGAGAATCAAACC+TGG + chr7.1:10946564-10946583 None:intergenic 45.0%
GTGAATGGTGTAGCTTTCTG+TGG - chr7.1:10946203-10946222 MS.gene018708:CDS 45.0%
GTTTGATTCTCCGTCTTACG+AGG - chr7.1:10946565-10946584 MS.gene018708:CDS 45.0%
TACATTGGGAGGCAATGTAC+CGG + chr7.1:10946174-10946193 None:intergenic 45.0%
TCCCTTGTTACCAAGTTGCT+CGG - chr7.1:10946113-10946132 MS.gene018708:CDS 45.0%
TCCTCCAAATGTAGTCTGCT+TGG + chr7.1:10946616-10946635 None:intergenic 45.0%
TGACAACCCTTTGCTTCTTC+CGG - chr7.1:10946366-10946385 MS.gene018708:CDS 45.0%
TGGTATGACCCTCATGATGA+TGG - chr7.1:10946289-10946308 MS.gene018708:CDS 45.0%
TTCCCCAAGCAGACTACATT+TGG - chr7.1:10946609-10946628 MS.gene018708:CDS 45.0%
TTCTTAGTACCCGAGGCAAA+TGG - chr7.1:10947478-10947497 MS.gene018708:CDS 45.0%
TTTCATCTGCATTCAAGGCC+AGG - chr7.1:10946543-10946562 MS.gene018708:CDS 45.0%
! ACCGAGCAACTTGGTAACAA+GGG + chr7.1:10946117-10946136 None:intergenic 45.0%
! AGTGCATTCATGGTTTGTGC+AGG + chr7.1:10946971-10946990 None:intergenic 45.0%
! CATGCAGGGTTTCGGAATTT+TGG - chr7.1:10946496-10946515 MS.gene018708:CDS 45.0%
! GCGTTGTTATTCTGAGCATG+AGG + chr7.1:10947571-10947590 None:intergenic 45.0%
! TCTTACGAGGTTGATCCAGT+TGG - chr7.1:10946578-10946597 MS.gene018708:CDS 45.0%
!! CAACTTTTCTTTGGCTGGCT+TGG - chr7.1:10946239-10946258 MS.gene018708:CDS 45.0%
!! CAAGTTGATCGGAATCTAGC+TGG + chr7.1:10947280-10947299 None:intergenic 45.0%
!!! TTTTGGCTTGGGTTCGGTAT+TGG - chr7.1:10946389-10946408 MS.gene018708:CDS 45.0%
ACAGCAGCTGATACATTGGG+AGG + chr7.1:10946185-10946204 None:intergenic 50.0%
ACATTGGGAGGCAATGTACC+GGG + chr7.1:10946173-10946192 None:intergenic 50.0%
CCCAAGCAGACTACATTTGG+AGG - chr7.1:10946612-10946631 MS.gene018708:CDS 50.0%
CCGATGCGGATGATATTCCA+TGG + chr7.1:10947303-10947322 None:intergenic 50.0%
CGAACCACAGAAAGAGGAGA+AGG - chr7.1:10946787-10946806 MS.gene018708:CDS 50.0%
GCAGTACAGTACCAGGCTAT+TGG - chr7.1:10947038-10947057 MS.gene018708:CDS 50.0%
GCCAAAACCGGAAGAAGCAA+AGG + chr7.1:10946376-10946395 None:intergenic 50.0%
GCGGTATAACGAGCAGTTTC+TGG + chr7.1:10946698-10946717 None:intergenic 50.0%
GCTCTATGCAGTACAGTACC+AGG - chr7.1:10947031-10947050 MS.gene018708:CDS 50.0%
GGAAAGCTTGGGGCTATAGT+TGG - chr7.1:10947322-10947341 MS.gene018708:CDS 50.0%
GGCAAAGACTGCTGCAATGA+AGG + chr7.1:10946477-10946496 None:intergenic 50.0%
GGCAAGAGCAAACATGAAGG+CGG + chr7.1:10947131-10947150 None:intergenic 50.0%
GGTGCTAAATGCGCTTGATG+TGG - chr7.1:10946007-10946026 MS.gene018708:CDS 50.0%
GTATATGCGACCGAGCAACT+TGG + chr7.1:10946126-10946145 None:intergenic 50.0%
GTCTTTGCCATGCAGGGTTT+CGG - chr7.1:10946488-10946507 MS.gene018708:CDS 50.0%
GTGCACTTTCTTAGTACCCG+AGG - chr7.1:10947471-10947490 MS.gene018708:CDS 50.0%
TACCGAACCCAAGCCAAAAC+CGG + chr7.1:10946388-10946407 None:intergenic 50.0%
TGAAGCCGAACCACAGAAAG+AGG - chr7.1:10946781-10946800 MS.gene018708:CDS 50.0%
TGGGGAACAGTTGAACCAAC+TGG + chr7.1:10946596-10946615 None:intergenic 50.0%
! CAGGGCAACTTTTCTTTGGC+TGG - chr7.1:10946234-10946253 MS.gene018708:CDS 50.0%
! CCCTTTGCTTCTTCCGGTTT+TGG - chr7.1:10946372-10946391 MS.gene018708:CDS 50.0%
! GACCGAGCAACTTGGTAACA+AGG + chr7.1:10946118-10946137 None:intergenic 50.0%
! GCATTCATGGTTTGTGCAGG+TGG + chr7.1:10946968-10946987 None:intergenic 50.0%
! GGGCTATAGTTGGTGCATTC+GGG - chr7.1:10947332-10947351 MS.gene018708:CDS 50.0%
! GGGGCTATAGTTGGTGCATT+CGG - chr7.1:10947331-10947350 MS.gene018708:CDS 50.0%
! TGGTGGTGACTACCCTCTTT+CGG - chr7.1:10946409-10946428 MS.gene018708:CDS 50.0%
!! ACCAGGCTATTGGTTTACCG+TGG - chr7.1:10947048-10947067 MS.gene018708:CDS 50.0%
!! GGCTGGCTTGGTGATAAGAT+GGG - chr7.1:10946251-10946270 MS.gene018708:CDS 50.0%
!! GGTTTCGGAATTTTGGGAGC+TGG - chr7.1:10946503-10946522 MS.gene018708:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGA+TGG - chr7.1:10946250-10946269 MS.gene018708:CDS 50.0%
!!! GCTTCTTCCGGTTTTGGCTT+GGG - chr7.1:10946378-10946397 MS.gene018708:CDS 50.0%
!!! TGCTTCTTCCGGTTTTGGCT+TGG - chr7.1:10946377-10946396 MS.gene018708:CDS 50.0%
!!! TTCCGGTTTTGGCTTGGGTT+CGG - chr7.1:10946383-10946402 MS.gene018708:CDS 50.0%
ATCCGCATCGGGAAAGCTTG+GGG - chr7.1:10947312-10947331 MS.gene018708:CDS 55.0%
CATCCGCATCGGGAAAGCTT+GGG - chr7.1:10947311-10947330 MS.gene018708:CDS 55.0%
GCAGCAGTCTTTGCCATGCA+GGG - chr7.1:10946482-10946501 MS.gene018708:CDS 55.0%
GCCACGGTAAACCAATAGCC+TGG + chr7.1:10947052-10947071 None:intergenic 55.0%
TCATCCGCATCGGGAAAGCT+TGG - chr7.1:10947310-10947329 MS.gene018708:CDS 55.0%
TGCAGCAGTCTTTGCCATGC+AGG - chr7.1:10946481-10946500 MS.gene018708:CDS 55.0%
! TGGCTTGGGTTCGGTATTGG+TGG - chr7.1:10946392-10946411 MS.gene018708:CDS 55.0%
!! GGCTTGGTGATAAGATGGGC+AGG - chr7.1:10946255-10946274 MS.gene018708:CDS 55.0%
AGCCCCAAGCTTTCCCGATG+CGG + chr7.1:10947317-10947336 None:intergenic 60.0%
GCTTCGCTGCACCATCAACG+TGG + chr7.1:10946151-10946170 None:intergenic 60.0%
! GCAGGGTACCCTGCAGGTAT+TGG - chr7.1:10947397-10947416 MS.gene018708:CDS 60.0%
!! GTTGATGGTGCAGCGAAGCC+CGG - chr7.1:10946152-10946171 MS.gene018708:CDS 60.0%
! GCAGATGCAGGGTACCCTGC+AGG - chr7.1:10947391-10947410 MS.gene018708:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 10945987 10947600 10945987 ID=MS.gene018708
chr7.1 mRNA 10945987 10947600 10945987 ID=MS.gene018708.t1;Parent=MS.gene018708
chr7.1 exon 10945987 10947600 10945987 ID=MS.gene018708.t1.exon1;Parent=MS.gene018708.t1
chr7.1 CDS 10945987 10947600 10945987 ID=cds.MS.gene018708.t1;Parent=MS.gene018708.t1
Gene Sequence

>MS.gene018708

ATGGCCAAGGATCAAATTGAGGTGCTAAATGCGCTTGATGTGGCTAAAACACAATGGTACCATTTCACTGCAATCATCATAGCTGGTATGGGATTCTTTACAGATGCATATGATCTGTTTTGTGTATCCCTTGTTACCAAGTTGCTCGGTCGCATATACTACCACGTTGATGGTGCAGCGAAGCCCGGTACATTGCCTCCCAATGTATCAGCTGCTGTGAATGGTGTAGCTTTCTGTGGAACACTTTCAGGGCAACTTTTCTTTGGCTGGCTTGGTGATAAGATGGGCAGGAAAAAAGTCTATGGTATGACCCTCATGATGATGGTTATCTGTTCAATTGGTTCTGGTCTTTCTTTCGGACACACTCCAAAATCTGTCATGACAACCCTTTGCTTCTTCCGGTTTTGGCTTGGGTTCGGTATTGGTGGTGACTACCCTCTTTCGGCTACCATAATGTCGGAGTATTCTAATAAAAAGACTCGTGGGGCCTTCATTGCAGCAGTCTTTGCCATGCAGGGTTTCGGAATTTTGGGAGCTGGTATATTTGCAATCATAATTTCATCTGCATTCAAGGCCAGGTTTGATTCTCCGTCTTACGAGGTTGATCCAGTTGGTTCAACTGTTCCCCAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCAGCTGCAATGACTTACTACTCGCGGACAAAGATGCCAGAAACTGCTCGTTATACCGCTTTAGTTGCTAAGAACACAGCGCAAGCTGCAGCAGATATGTCTAAGGTTTTGCAGGTTGAGATTGAAGCCGAACCACAGAAAGAGGAGAAGGAAAAGGCTAAATCATATGGCTTGTTCTCAAAAGAGTTCATGAGTCGTCATGGACTACATTTACTTGGTACAACAAGCACTTGGTTCTTGCTTGATATAGCATTTTATAGCCAAAATCTCTTCCAGAAGGATATTTTCAGCGCAATTGGTTGGATACCACCTGCACAAACCATGAATGCACTTGAGGAGGTTTACAAAATCGCGAGAGCTCAAACACTTATTGCTCTATGCAGTACAGTACCAGGCTATTGGTTTACCGTGGCTTTCATAGACAGAATAGGAAGATTTACCATCCAATTGATGGGATTCTTCTTTATGACCGCCTTCATGTTTGCTCTTGCCATTCCTTATGAACACTGGACTCATAAGGATAACCGAATAGGATTTGTGGTGATGTATTCCTTGACCTTCTTCTTTGCAAATTTTGGGCCTAATGCTACAACATTTGTTGTGCCAGCAGAGATTTTTCCAGCTAGATTCCGATCAACTTGCCATGGAATATCATCCGCATCGGGAAAGCTTGGGGCTATAGTTGGTGCATTCGGGTTCTTGTATTTGGCACAAAACAAGGACAAGAGTAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTATGAAGAATTCATTGATTTTGTTGGGATGTTGTAACATTTTGGGGTTCTTGTGCACTTTCTTAGTACCCGAGGCAAATGGAAAATCTTTAGAGGAAATGTCAGGTGAGAATGATGAGGAAGTTGGAAGCAGAGAAGATGTAGAGAAACCTCATGCTCAGAATAACAACGCTGTTCCGTAG

Protein sequence

>MS.gene018708.t1

MAKDQIEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCVSLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMMMVICSIGSGLSFGHTPKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGAGIFAIIISSAFKARFDSPSYEVDPVGSTVPQADYIWRIIVMVGALPAAMTYYSRTKMPETARYTALVAKNTAQAAADMSKVLQVEIEAEPQKEEKEKAKSYGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYKIARAQTLIALCSTVPGYWFTVAFIDRIGRFTIQLMGFFFMTAFMFALAIPYEHWTHKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGAFGFLYLAQNKDKSKADAGYPAGIGMKNSLILLGCCNILGFLCTFLVPEANGKSLEEMSGENDEEVGSREDVEKPHAQNNNAVP