Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018708.t1 | XP_013449892.1 | 95.1 | 536 | 26 | 0 | 1 | 536 | 1 | 536 | 4.00E-294 | 1020 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018708.t1 | Q96303 | 82.0 | 527 | 92 | 1 | 1 | 524 | 1 | 527 | 3.7e-256 | 885.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018708.t1 | A0A072UDN5 | 95.1 | 536 | 26 | 0 | 1 | 536 | 1 | 536 | 2.9e-294 | 1020.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene059428 | MS.gene018708 | PPI |
MS.gene006892 | MS.gene018708 | PPI |
MS.gene56432 | MS.gene018708 | PPI |
MS.gene067567 | MS.gene018708 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018708.t1 | MTR_7g096870 | 97.575 | 536 | 13 | 0 | 1 | 536 | 1 | 536 | 0.0 | 1084 |
MS.gene018708.t1 | MTR_7g096880 | 90.637 | 534 | 48 | 1 | 1 | 534 | 1 | 532 | 0.0 | 962 |
MS.gene018708.t1 | MTR_1g069935 | 85.356 | 519 | 76 | 0 | 1 | 519 | 1 | 519 | 0.0 | 941 |
MS.gene018708.t1 | MTR_3g082700 | 75.741 | 540 | 128 | 1 | 1 | 537 | 1 | 540 | 0.0 | 837 |
MS.gene018708.t1 | MTR_1g069930 | 75.340 | 515 | 126 | 1 | 1 | 514 | 1 | 515 | 0.0 | 835 |
MS.gene018708.t1 | MTR_1g074930 | 76.834 | 518 | 116 | 2 | 5 | 518 | 4 | 521 | 0.0 | 833 |
MS.gene018708.t1 | MTR_1g043220 | 75.376 | 532 | 127 | 2 | 5 | 532 | 4 | 535 | 0.0 | 822 |
MS.gene018708.t1 | MTR_1g043200 | 76.281 | 527 | 119 | 3 | 5 | 527 | 4 | 528 | 0.0 | 817 |
MS.gene018708.t1 | MTR_1g074940 | 76.654 | 514 | 100 | 4 | 1 | 508 | 1 | 500 | 0.0 | 813 |
MS.gene018708.t1 | MTR_1g043290 | 75.475 | 526 | 125 | 2 | 5 | 526 | 4 | 529 | 0.0 | 812 |
MS.gene018708.t1 | MTR_1g028600 | 61.089 | 514 | 188 | 3 | 6 | 518 | 3 | 505 | 0.0 | 634 |
MS.gene018708.t1 | MTR_5g068140 | 57.537 | 544 | 203 | 4 | 8 | 532 | 7 | 541 | 0.0 | 619 |
MS.gene018708.t1 | MTR_4g083960 | 51.866 | 536 | 227 | 12 | 6 | 534 | 5 | 516 | 0.0 | 518 |
MS.gene018708.t1 | MTR_3g084110 | 21.875 | 448 | 288 | 15 | 76 | 512 | 76 | 472 | 1.80e-13 | 73.2 |
MS.gene018708.t1 | MTR_7g446340 | 23.340 | 467 | 293 | 17 | 76 | 527 | 104 | 520 | 3.33e-12 | 69.3 |
MS.gene018708.t1 | MTR_6g007340 | 23.340 | 467 | 293 | 17 | 76 | 527 | 104 | 520 | 3.33e-12 | 69.3 |
MS.gene018708.t1 | MTR_6g088450 | 25.564 | 399 | 245 | 12 | 81 | 463 | 108 | 470 | 4.93e-12 | 68.6 |
MS.gene018708.t1 | MTR_1g116660 | 21.429 | 434 | 277 | 14 | 90 | 511 | 97 | 478 | 5.07e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018708.t1 | AT2G38940 | 85.078 | 516 | 74 | 1 | 1 | 513 | 1 | 516 | 0.0 | 928 |
MS.gene018708.t1 | AT3G54700 | 84.556 | 518 | 79 | 1 | 1 | 518 | 1 | 517 | 0.0 | 926 |
MS.gene018708.t1 | AT3G54700 | 84.556 | 518 | 79 | 1 | 1 | 518 | 1 | 517 | 0.0 | 926 |
MS.gene018708.t1 | AT2G32830 | 74.122 | 541 | 136 | 1 | 1 | 537 | 1 | 541 | 0.0 | 853 |
MS.gene018708.t1 | AT5G43360 | 78.077 | 520 | 112 | 1 | 1 | 518 | 1 | 520 | 0.0 | 839 |
MS.gene018708.t1 | AT5G43350 | 77.992 | 518 | 112 | 1 | 1 | 516 | 1 | 518 | 0.0 | 837 |
MS.gene018708.t1 | AT5G43370 | 77.799 | 518 | 113 | 1 | 1 | 516 | 1 | 518 | 0.0 | 808 |
MS.gene018708.t1 | AT5G43370 | 77.799 | 518 | 113 | 1 | 1 | 516 | 1 | 518 | 0.0 | 808 |
MS.gene018708.t1 | AT5G43340 | 67.181 | 518 | 155 | 2 | 3 | 518 | 4 | 508 | 0.0 | 737 |
MS.gene018708.t1 | AT1G20860 | 48.972 | 535 | 255 | 9 | 6 | 533 | 3 | 526 | 7.72e-174 | 501 |
MS.gene018708.t1 | AT1G76430 | 47.858 | 537 | 251 | 11 | 5 | 528 | 3 | 523 | 1.67e-173 | 501 |
MS.gene018708.t1 | AT1G20860 | 48.972 | 535 | 255 | 9 | 6 | 533 | 55 | 578 | 4.69e-173 | 501 |
MS.gene018708.t1 | AT4G08878 | 68.487 | 238 | 75 | 0 | 31 | 268 | 13 | 250 | 3.50e-115 | 342 |
MS.gene018708.t1 | AT4G08895 | 55.944 | 143 | 31 | 1 | 318 | 460 | 23 | 133 | 5.96e-47 | 161 |
MS.gene018708.t1 | AT2G43330 | 22.748 | 444 | 260 | 17 | 90 | 511 | 93 | 475 | 2.02e-11 | 67.0 |
Find 140 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTTCTTCTTTGCAAATTT+TGG | -0.031518 | 7.1:-10946351 | MS.gene018708:CDS |
GCTTTCTGTGGAACACTTTC+AGG | 0.108694 | 7.1:-10947350 | MS.gene018708:CDS |
CCCTTTGCTTCTTCCGGTTT+TGG | 0.142326 | 7.1:-10947193 | MS.gene018708:CDS |
TATCCTTCTGGAAGAGATTT+TGG | 0.150755 | 7.1:+10946646 | None:intergenic |
CATGCAGGGTTTCGGAATTT+TGG | 0.151969 | 7.1:-10947069 | MS.gene018708:CDS |
GTTGGGATGTTGTAACATTT+TGG | 0.179506 | 7.1:-10946124 | MS.gene018708:CDS |
TGCATTCGGGTTCTTGTATT+TGG | 0.192044 | 7.1:-10946220 | MS.gene018708:CDS |
GCGGTATAACGAGCAGTTTC+TGG | 0.246126 | 7.1:+10946870 | None:intergenic |
GTTATCTGTTCAATTGGTTC+TGG | 0.268162 | 7.1:-10947254 | MS.gene018708:CDS |
AGGGTTGTCATGACAGATTT+TGG | 0.291172 | 7.1:+10947212 | None:intergenic |
GGGGCTATAGTTGGTGCATT+CGG | 0.293505 | 7.1:-10946234 | MS.gene018708:CDS |
ATTGGTTCTGGTCTTTCTTT+CGG | 0.310334 | 7.1:-10947242 | MS.gene018708:CDS |
AACCTCCTCAAGTGCATTCA+TGG | 0.318200 | 7.1:+10946587 | None:intergenic |
TGACAACCCTTTGCTTCTTC+CGG | 0.331448 | 7.1:-10947199 | MS.gene018708:CDS |
ATTAGAATACTCCGACATTA+TGG | 0.331666 | 7.1:+10947130 | None:intergenic |
CTTCTCCTCTTTCTGTGGTT+CGG | 0.335668 | 7.1:+10946779 | None:intergenic |
CATAATTTCATCTGCATTCA+AGG | 0.338184 | 7.1:-10947027 | MS.gene018708:CDS |
GTCTTTGCCATGCAGGGTTT+CGG | 0.339550 | 7.1:-10947077 | MS.gene018708:CDS |
GGGCTATAGTTGGTGCATTC+GGG | 0.341772 | 7.1:-10946233 | MS.gene018708:CDS |
TTGCGCTGAAAATATCCTTC+TGG | 0.369813 | 7.1:+10946634 | None:intergenic |
TTCCCCAAGCAGACTACATT+TGG | 0.372520 | 7.1:-10946956 | MS.gene018708:CDS |
CCTCCAAATGTAGTCTGCTT+GGG | 0.372673 | 7.1:+10946953 | None:intergenic |
GCAGTACAGTACCAGGCTAT+TGG | 0.376413 | 7.1:-10946527 | MS.gene018708:CDS |
AAGATTTACCATCCAATTGA+TGG | 0.386978 | 7.1:-10946475 | MS.gene018708:CDS |
TGGTGGTGACTACCCTCTTT+CGG | 0.394304 | 7.1:-10947156 | MS.gene018708:CDS |
TGCAGCAGTCTTTGCCATGC+AGG | 0.397867 | 7.1:-10947084 | MS.gene018708:CDS |
ACAACAAATGTTGTAGCATT+AGG | 0.400761 | 7.1:+10946327 | None:intergenic |
CGTCATGGACTACATTTACT+TGG | 0.401161 | 7.1:-10946711 | MS.gene018708:CDS |
TAAAGAAGAATCCCATCAAT+TGG | 0.402453 | 7.1:+10946463 | None:intergenic |
CATCCGCATCGGGAAAGCTT+GGG | 0.403184 | 7.1:-10946254 | MS.gene018708:CDS |
TAGCACCTCAATTTGATCCT+TGG | 0.413690 | 7.1:+10947574 | None:intergenic |
TCCTCCAAATGTAGTCTGCT+TGG | 0.420387 | 7.1:+10946952 | None:intergenic |
CGCATATACTACCACGTTGA+TGG | 0.426932 | 7.1:-10947428 | MS.gene018708:CDS |
TACCGAACCCAAGCCAAAAC+CGG | 0.427494 | 7.1:+10947180 | None:intergenic |
TGGCTGGCTTGGTGATAAGA+TGG | 0.431799 | 7.1:-10947315 | MS.gene018708:CDS |
GGTGAGAATGATGAGGAAGT+TGG | 0.432793 | 7.1:-10946042 | MS.gene018708:CDS |
GGCAAATGGAAAATCTTTAG+AGG | 0.436138 | 7.1:-10946073 | MS.gene018708:CDS |
GCAGGGTACCCTGCAGGTAT+TGG | 0.442599 | 7.1:-10946168 | MS.gene018708:CDS |
ATGATGGTTATCTGTTCAAT+TGG | 0.447387 | 7.1:-10947260 | MS.gene018708:CDS |
GGCAAAGACTGCTGCAATGA+AGG | 0.448745 | 7.1:+10947091 | None:intergenic |
TGCAATCATCATAGCTGGTA+TGG | 0.448896 | 7.1:-10947510 | MS.gene018708:CDS |
AGCTGCAGCAGATATGTCTA+AGG | 0.462417 | 7.1:-10946823 | MS.gene018708:CDS |
TTATGAGTCCAGTGTTCATA+AGG | 0.464297 | 7.1:+10946411 | None:intergenic |
GGCTGGCTTGGTGATAAGAT+GGG | 0.464364 | 7.1:-10947314 | MS.gene018708:CDS |
TCATCCGCATCGGGAAAGCT+TGG | 0.465982 | 7.1:-10946255 | MS.gene018708:CDS |
GACAAGAGTAAAGCAGATGC+AGG | 0.466575 | 7.1:-10946186 | MS.gene018708:CDS |
AAGGAAAAGGCTAAATCATA+TGG | 0.468204 | 7.1:-10946759 | MS.gene018708:CDS |
GAGTAGTAAGTCATTGCAGC+TGG | 0.469391 | 7.1:+10946906 | None:intergenic |
TGGGGAACAGTTGAACCAAC+TGG | 0.470918 | 7.1:+10946972 | None:intergenic |
ACATCACCACAAATCCTATT+CGG | 0.472436 | 7.1:+10946382 | None:intergenic |
ATTCACAGCAGCTGATACAT+TGG | 0.472564 | 7.1:+10947379 | None:intergenic |
TTCTTAGTACCCGAGGCAAA+TGG | 0.472965 | 7.1:-10946087 | MS.gene018708:CDS |
ACTCATAAGGATAACCGAAT+AGG | 0.475963 | 7.1:-10946396 | MS.gene018708:CDS |
CTTTCTGTGGAACACTTTCA+GGG | 0.477760 | 7.1:-10947349 | MS.gene018708:CDS |
CAAGTTGATCGGAATCTAGC+TGG | 0.478361 | 7.1:+10946288 | None:intergenic |
TGAAGCCGAACCACAGAAAG+AGG | 0.480495 | 7.1:-10946784 | MS.gene018708:CDS |
GACATTATGGTAGCCGAAAG+AGG | 0.481182 | 7.1:+10947143 | None:intergenic |
TTTCATCTGCATTCAAGGCC+AGG | 0.481632 | 7.1:-10947022 | MS.gene018708:CDS |
TGGCTTGGGTTCGGTATTGG+TGG | 0.492801 | 7.1:-10947173 | MS.gene018708:CDS |
TCCCTTGTTACCAAGTTGCT+CGG | 0.496149 | 7.1:-10947452 | MS.gene018708:CDS |
CTTGTATTTGGCACAAAACA+AGG | 0.497426 | 7.1:-10946208 | MS.gene018708:CDS |
TTATGAACACTGGACTCATA+AGG | 0.499390 | 7.1:-10946409 | MS.gene018708:CDS |
CCCAAAATTTGCAAAGAAGA+AGG | 0.507277 | 7.1:+10946350 | None:intergenic |
TACATTGGGAGGCAATGTAC+CGG | 0.509415 | 7.1:+10947394 | None:intergenic |
GTTGATGGTGCAGCGAAGCC+CGG | 0.509611 | 7.1:-10947413 | MS.gene018708:CDS |
CCCAAGCAGACTACATTTGG+AGG | 0.513096 | 7.1:-10946953 | MS.gene018708:CDS |
GGAAAGCTTGGGGCTATAGT+TGG | 0.514607 | 7.1:-10946243 | MS.gene018708:CDS |
GCAGCAGTCTTTGCCATGCA+GGG | 0.514618 | 7.1:-10947083 | MS.gene018708:CDS |
AGATTTACCATCCAATTGAT+GGG | 0.514693 | 7.1:-10946474 | MS.gene018708:CDS |
TTCACTGCAATCATCATAGC+TGG | 0.515551 | 7.1:-10947515 | MS.gene018708:CDS |
ACAGAAAGAGGAGAAGGAAA+AGG | 0.518948 | 7.1:-10946772 | MS.gene018708:CDS |
GGATAACCGAATAGGATTTG+TGG | 0.523531 | 7.1:-10946388 | MS.gene018708:CDS |
CATGGAATATCATCCGCATC+GGG | 0.524513 | 7.1:-10946264 | MS.gene018708:CDS |
GGCTTGGTGATAAGATGGGC+AGG | 0.528400 | 7.1:-10947310 | MS.gene018708:CDS |
GCCAAAACCGGAAGAAGCAA+AGG | 0.528845 | 7.1:+10947192 | None:intergenic |
CTATGATGATTGCAGTGAAA+TGG | 0.528943 | 7.1:+10947519 | None:intergenic |
TTCTTCATACCAATACCTGC+AGG | 0.529263 | 7.1:+10946159 | None:intergenic |
CGAACCACAGAAAGAGGAGA+AGG | 0.530308 | 7.1:-10946778 | MS.gene018708:CDS |
TTCACAGCAGCTGATACATT+GGG | 0.530334 | 7.1:+10947380 | None:intergenic |
GTGGCTTTCATAGACAGAAT+AGG | 0.532759 | 7.1:-10946498 | MS.gene018708:CDS |
AGTGCATTCATGGTTTGTGC+AGG | 0.539877 | 7.1:+10946597 | None:intergenic |
AATGTATCAGCTGCTGTGAA+TGG | 0.543645 | 7.1:-10947377 | MS.gene018708:CDS |
GCAGATGCAGGGTACCCTGC+AGG | 0.546146 | 7.1:-10946174 | MS.gene018708:CDS |
GGCTTGAACAGTCATGGCCA+AGG | 0.546875 | 7.1:-10947591 | None:intergenic |
GCATTCATGGTTTGTGCAGG+TGG | 0.550880 | 7.1:+10946600 | None:intergenic |
GTGAATGGTGTAGCTTTCTG+TGG | 0.554704 | 7.1:-10947362 | MS.gene018708:CDS |
ATATTCCATGGCAAGTTGAT+CGG | 0.556932 | 7.1:+10946277 | None:intergenic |
AAATCTTTAGAGGAAATGTC+AGG | 0.557207 | 7.1:-10946063 | MS.gene018708:CDS |
TTGCCATTCCTTATGAACAC+TGG | 0.558026 | 7.1:-10946419 | MS.gene018708:CDS |
TACTTGGTACAACAAGCACT+TGG | 0.559616 | 7.1:-10946695 | MS.gene018708:CDS |
CCATGGAATATCATCCGCAT+CGG | 0.559707 | 7.1:-10946265 | MS.gene018708:CDS |
TCTTACGAGGTTGATCCAGT+TGG | 0.560435 | 7.1:-10946987 | MS.gene018708:CDS |
TGGAGGATAATTGTGATGGT+AGG | 0.563401 | 7.1:-10946936 | MS.gene018708:CDS |
AGTCCAGTGTTCATAAGGAA+TGG | 0.563480 | 7.1:+10946416 | None:intergenic |
GACCGAGCAACTTGGTAACA+AGG | 0.566465 | 7.1:+10947450 | None:intergenic |
GCAATCATCATAGCTGGTAT+GGG | 0.570874 | 7.1:-10947509 | MS.gene018708:CDS |
AGATTCCGATCAACTTGCCA+TGG | 0.572833 | 7.1:-10946282 | MS.gene018708:CDS |
GAAGAATCCCATCAATTGGA+TGG | 0.573451 | 7.1:+10946467 | None:intergenic |
ACATTGGGAGGCAATGTACC+GGG | 0.578245 | 7.1:+10947395 | None:intergenic |
TAGCCAAAATCTCTTCCAGA+AGG | 0.581352 | 7.1:-10946649 | MS.gene018708:CDS |
GCCACGGTAAACCAATAGCC+TGG | 0.581737 | 7.1:+10946516 | None:intergenic |
GCTCTATGCAGTACAGTACC+AGG | 0.583363 | 7.1:-10946534 | MS.gene018708:CDS |
AAAGAGTTCATGAGTCGTCA+TGG | 0.583437 | 7.1:-10946726 | MS.gene018708:CDS |
TGGTATGACCCTCATGATGA+TGG | 0.586953 | 7.1:-10947276 | MS.gene018708:CDS |
AACCATGAATGCACTTGAGG+AGG | 0.589777 | 7.1:-10946589 | MS.gene018708:CDS |
CCGATGCGGATGATATTCCA+TGG | 0.591183 | 7.1:+10946265 | None:intergenic |
CCAAAACCGGAAGAAGCAAA+GGG | 0.592671 | 7.1:+10947193 | None:intergenic |
CATGGCCAAGGATCAAATTG+AGG | 0.593116 | 7.1:-10947579 | MS.gene018708:CDS |
AGCCCCAAGCTTTCCCGATG+CGG | 0.596062 | 7.1:+10946251 | None:intergenic |
CTCCAAATGTAGTCTGCTTG+GGG | 0.596396 | 7.1:+10946954 | None:intergenic |
ATCCGCATCGGGAAAGCTTG+GGG | 0.597584 | 7.1:-10946253 | MS.gene018708:CDS |
AATGTCAGGTGAGAATGATG+AGG | 0.605492 | 7.1:-10946049 | MS.gene018708:CDS |
CATTTGGAGGATAATTGTGA+TGG | 0.611828 | 7.1:-10946940 | MS.gene018708:CDS |
GCGTTGTTATTCTGAGCATG+AGG | 0.612504 | 7.1:+10945997 | None:intergenic |
GTTTGATTCTCCGTCTTACG+AGG | 0.613183 | 7.1:-10947000 | MS.gene018708:CDS |
ACTGGATCAACCTCGTAAGA+CGG | 0.613448 | 7.1:+10946990 | None:intergenic |
ACAAACCATGAATGCACTTG+AGG | 0.613620 | 7.1:-10946592 | MS.gene018708:CDS |
AGTAGTAAGTCATTGCAGCT+GGG | 0.615517 | 7.1:+10946907 | None:intergenic |
AACAGATAACCATCATCATG+AGG | 0.618082 | 7.1:+10947267 | None:intergenic |
GTATATGCGACCGAGCAACT+TGG | 0.619928 | 7.1:+10947442 | None:intergenic |
ACATTATGGTAGCCGAAAGA+GGG | 0.623125 | 7.1:+10947144 | None:intergenic |
ACCAGGCTATTGGTTTACCG+TGG | 0.630346 | 7.1:-10946517 | MS.gene018708:CDS |
TATTCTGTCTATGAAAGCCA+CGG | 0.630634 | 7.1:+10946500 | None:intergenic |
GGTGCTAAATGCGCTTGATG+TGG | 0.631666 | 7.1:-10947558 | MS.gene018708:CDS |
ATTTGCAAAGAAGAAGGTCA+AGG | 0.633508 | 7.1:+10946356 | None:intergenic |
GTGCACTTTCTTAGTACCCG+AGG | 0.637975 | 7.1:-10946094 | MS.gene018708:CDS |
AATGGCAAGAGCAAACATGA+AGG | 0.639251 | 7.1:+10946434 | None:intergenic |
CAAAATTCCGAAACCCTGCA+TGG | 0.639934 | 7.1:+10947070 | None:intergenic |
ACAGCAGCTGATACATTGGG+AGG | 0.653095 | 7.1:+10947383 | None:intergenic |
ACCGAGCAACTTGGTAACAA+GGG | 0.653584 | 7.1:+10947451 | None:intergenic |
ACAAGAGTAAAGCAGATGCA+GGG | 0.657371 | 7.1:-10946185 | MS.gene018708:CDS |
TCTTTCGGCTACCATAATGT+CGG | 0.663564 | 7.1:-10947141 | MS.gene018708:CDS |
GTAAGACGGAGAATCAAACC+TGG | 0.669834 | 7.1:+10947004 | None:intergenic |
CTGCAATGACTTACTACTCG+CGG | 0.671835 | 7.1:-10946902 | MS.gene018708:CDS |
GGCAAGAGCAAACATGAAGG+CGG | 0.671889 | 7.1:+10946437 | None:intergenic |
ACAGATAACCATCATCATGA+GGG | 0.673555 | 7.1:+10947268 | None:intergenic |
TCTTCATACCAATACCTGCA+GGG | 0.687460 | 7.1:+10946160 | None:intergenic |
TGTGTTCTTAGCAACTAAAG+CGG | 0.693409 | 7.1:+10946851 | None:intergenic |
TTGATGTGGCTAAAACACAA+TGG | 0.704796 | 7.1:-10947544 | MS.gene018708:CDS |
GCTTCGCTGCACCATCAACG+TGG | 0.716385 | 7.1:+10947417 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAATTCATTGATTTTGTT+GGG | - | chr7.1:10947424-10947443 | MS.gene018708:CDS | 20.0% |
! | ATTCTAATAAAAAGACTCGT+GGG | - | chr7.1:10946450-10946469 | MS.gene018708:CDS | 25.0% |
! | TATTCTAATAAAAAGACTCG+TGG | - | chr7.1:10946449-10946468 | MS.gene018708:CDS | 25.0% |
!!! | GAAGAATTCATTGATTTTGT+TGG | - | chr7.1:10947423-10947442 | MS.gene018708:CDS | 25.0% |
AAGATTTACCATCCAATTGA+TGG | - | chr7.1:10947090-10947109 | MS.gene018708:CDS | 30.0% | |
AAGGAAAAGGCTAAATCATA+TGG | - | chr7.1:10946806-10946825 | MS.gene018708:CDS | 30.0% | |
ACAACAAATGTTGTAGCATT+AGG | + | chr7.1:10947241-10947260 | None:intergenic | 30.0% | |
AGATTTACCATCCAATTGAT+GGG | - | chr7.1:10947091-10947110 | MS.gene018708:CDS | 30.0% | |
ATGATGGTTATCTGTTCAAT+TGG | - | chr7.1:10946305-10946324 | MS.gene018708:CDS | 30.0% | |
ATTAGAATACTCCGACATTA+TGG | + | chr7.1:10946438-10946457 | None:intergenic | 30.0% | |
CATAATTTCATCTGCATTCA+AGG | - | chr7.1:10946538-10946557 | MS.gene018708:CDS | 30.0% | |
TAAAGAAGAATCCCATCAAT+TGG | + | chr7.1:10947105-10947124 | None:intergenic | 30.0% | |
TTCTAATAAAAAGACTCGTG+GGG | - | chr7.1:10946451-10946470 | MS.gene018708:CDS | 30.0% | |
! | AAATCTTTAGAGGAAATGTC+AGG | - | chr7.1:10947502-10947521 | MS.gene018708:CDS | 30.0% |
! | ACCTTCTTCTTTGCAAATTT+TGG | - | chr7.1:10947214-10947233 | MS.gene018708:CDS | 30.0% |
! | CCTTCTTCTTTGCAAATTTT+GGG | - | chr7.1:10947215-10947234 | MS.gene018708:CDS | 30.0% |
! | TAAAGATTTTCCATTTGCCT+CGG | + | chr7.1:10947491-10947510 | None:intergenic | 30.0% |
! | TTGGGATGTTGTAACATTTT+GGG | - | chr7.1:10947442-10947461 | MS.gene018708:CDS | 30.0% |
AACAGATAACCATCATCATG+AGG | + | chr7.1:10946301-10946320 | None:intergenic | 35.0% | |
ACAGATAACCATCATCATGA+GGG | + | chr7.1:10946300-10946319 | None:intergenic | 35.0% | |
ACATCACCACAAATCCTATT+CGG | + | chr7.1:10947186-10947205 | None:intergenic | 35.0% | |
ACTCATAAGGATAACCGAAT+AGG | - | chr7.1:10947169-10947188 | MS.gene018708:CDS | 35.0% | |
ATTTGCAAAGAAGAAGGTCA+AGG | + | chr7.1:10947212-10947231 | None:intergenic | 35.0% | |
CATTTGGAGGATAATTGTGA+TGG | - | chr7.1:10946625-10946644 | MS.gene018708:CDS | 35.0% | |
CCCAAAATTTGCAAAGAAGA+AGG | + | chr7.1:10947218-10947237 | None:intergenic | 35.0% | |
CTATGATGATTGCAGTGAAA+TGG | + | chr7.1:10946049-10946068 | None:intergenic | 35.0% | |
CTTGTATTTGGCACAAAACA+AGG | - | chr7.1:10947357-10947376 | MS.gene018708:CDS | 35.0% | |
GGCAAATGGAAAATCTTTAG+AGG | - | chr7.1:10947492-10947511 | MS.gene018708:CDS | 35.0% | |
TATTCTGTCTATGAAAGCCA+CGG | + | chr7.1:10947068-10947087 | None:intergenic | 35.0% | |
TGTGTTCTTAGCAACTAAAG+CGG | + | chr7.1:10946717-10946736 | None:intergenic | 35.0% | |
TTATGAACACTGGACTCATA+AGG | - | chr7.1:10947156-10947175 | MS.gene018708:CDS | 35.0% | |
TTATGAGTCCAGTGTTCATA+AGG | + | chr7.1:10947157-10947176 | None:intergenic | 35.0% | |
TTGATGTGGCTAAAACACAA+TGG | - | chr7.1:10946021-10946040 | MS.gene018708:CDS | 35.0% | |
! | AAAGATTTTCCATTTGCCTC+GGG | + | chr7.1:10947490-10947509 | None:intergenic | 35.0% |
! | AAGGATATTTTCAGCGCAAT+TGG | - | chr7.1:10946935-10946954 | MS.gene018708:CDS | 35.0% |
! | ATATTTTCAGCGCAATTGGT+TGG | - | chr7.1:10946939-10946958 | MS.gene018708:CDS | 35.0% |
! | GTTATCTGTTCAATTGGTTC+TGG | - | chr7.1:10946311-10946330 | MS.gene018708:CDS | 35.0% |
! | GTTGGGATGTTGTAACATTT+TGG | - | chr7.1:10947441-10947460 | MS.gene018708:CDS | 35.0% |
! | TGGGATGTTGTAACATTTTG+GGG | - | chr7.1:10947443-10947462 | MS.gene018708:CDS | 35.0% |
!! | AGATATGTCTAAGGTTTTGC+AGG | - | chr7.1:10946751-10946770 | MS.gene018708:CDS | 35.0% |
!! | ATATTCCATGGCAAGTTGAT+CGG | + | chr7.1:10947291-10947310 | None:intergenic | 35.0% |
!! | ATTGGTTCTGGTCTTTCTTT+CGG | - | chr7.1:10946323-10946342 | MS.gene018708:CDS | 35.0% |
!! | TATCCTTCTGGAAGAGATTT+TGG | + | chr7.1:10946922-10946941 | None:intergenic | 35.0% |
AAAGAGTTCATGAGTCGTCA+TGG | - | chr7.1:10946839-10946858 | MS.gene018708:CDS | 40.0% | |
AATGGCAAGAGCAAACATGA+AGG | + | chr7.1:10947134-10947153 | None:intergenic | 40.0% | |
AATGTATCAGCTGCTGTGAA+TGG | - | chr7.1:10946188-10946207 | MS.gene018708:CDS | 40.0% | |
AATGTCAGGTGAGAATGATG+AGG | - | chr7.1:10947516-10947535 | MS.gene018708:CDS | 40.0% | |
ACAAACCATGAATGCACTTG+AGG | - | chr7.1:10946973-10946992 | MS.gene018708:CDS | 40.0% | |
ACAAGAGTAAAGCAGATGCA+GGG | - | chr7.1:10947380-10947399 | MS.gene018708:CDS | 40.0% | |
ACAGAAAGAGGAGAAGGAAA+AGG | - | chr7.1:10946793-10946812 | MS.gene018708:CDS | 40.0% | |
ACATTATGGTAGCCGAAAGA+GGG | + | chr7.1:10946424-10946443 | None:intergenic | 40.0% | |
AGTAGTAAGTCATTGCAGCT+GGG | + | chr7.1:10946661-10946680 | None:intergenic | 40.0% | |
AGTCCAGTGTTCATAAGGAA+TGG | + | chr7.1:10947152-10947171 | None:intergenic | 40.0% | |
ATGGGCAGGAAAAAAGTCTA+TGG | - | chr7.1:10946269-10946288 | MS.gene018708:CDS | 40.0% | |
ATTCACAGCAGCTGATACAT+TGG | + | chr7.1:10946189-10946208 | None:intergenic | 40.0% | |
CTTTCTGTGGAACACTTTCA+GGG | - | chr7.1:10946216-10946235 | MS.gene018708:CDS | 40.0% | |
GAAGAATCCCATCAATTGGA+TGG | + | chr7.1:10947101-10947120 | None:intergenic | 40.0% | |
GCAATCATCATAGCTGGTAT+GGG | - | chr7.1:10946056-10946075 | MS.gene018708:CDS | 40.0% | |
GGATAACCGAATAGGATTTG+TGG | - | chr7.1:10947177-10947196 | MS.gene018708:CDS | 40.0% | |
GTGGCTTTCATAGACAGAAT+AGG | - | chr7.1:10947067-10947086 | MS.gene018708:CDS | 40.0% | |
TACTTGGTACAACAAGCACT+TGG | - | chr7.1:10946870-10946889 | MS.gene018708:CDS | 40.0% | |
TAGCACCTCAATTTGATCCT+TGG | + | chr7.1:10945994-10946013 | None:intergenic | 40.0% | |
TAGCCAAAATCTCTTCCAGA+AGG | - | chr7.1:10946916-10946935 | MS.gene018708:CDS | 40.0% | |
TCTTCATACCAATACCTGCA+GGG | + | chr7.1:10947408-10947427 | None:intergenic | 40.0% | |
TCTTTCGGCTACCATAATGT+CGG | - | chr7.1:10946424-10946443 | MS.gene018708:CDS | 40.0% | |
TGCAATCATCATAGCTGGTA+TGG | - | chr7.1:10946055-10946074 | MS.gene018708:CDS | 40.0% | |
TGGAGGATAATTGTGATGGT+AGG | - | chr7.1:10946629-10946648 | MS.gene018708:CDS | 40.0% | |
TTCACAGCAGCTGATACATT+GGG | + | chr7.1:10946188-10946207 | None:intergenic | 40.0% | |
TTCACTGCAATCATCATAGC+TGG | - | chr7.1:10946050-10946069 | MS.gene018708:CDS | 40.0% | |
TTCTTCATACCAATACCTGC+AGG | + | chr7.1:10947409-10947428 | None:intergenic | 40.0% | |
TTGCCATTCCTTATGAACAC+TGG | - | chr7.1:10947146-10947165 | MS.gene018708:CDS | 40.0% | |
TTGCGCTGAAAATATCCTTC+TGG | + | chr7.1:10946934-10946953 | None:intergenic | 40.0% | |
! | AGGGTTGTCATGACAGATTT+TGG | + | chr7.1:10946356-10946375 | None:intergenic | 40.0% |
! | ATGCAGGGTTTCGGAATTTT+GGG | - | chr7.1:10946497-10946516 | MS.gene018708:CDS | 40.0% |
! | CGTCATGGACTACATTTACT+TGG | - | chr7.1:10946854-10946873 | MS.gene018708:CDS | 40.0% |
! | CTTTCAGGGCAACTTTTCTT+TGG | - | chr7.1:10946230-10946249 | MS.gene018708:CDS | 40.0% |
! | TGCATTCGGGTTCTTGTATT+TGG | - | chr7.1:10947345-10947364 | MS.gene018708:CDS | 40.0% |
! | TTTTCCTTCTCCTCTTTCTG+TGG | + | chr7.1:10946794-10946813 | None:intergenic | 40.0% |
AACCATGAATGCACTTGAGG+AGG | - | chr7.1:10946976-10946995 | MS.gene018708:CDS | 45.0% | |
AACCTCCTCAAGTGCATTCA+TGG | + | chr7.1:10946981-10947000 | None:intergenic | 45.0% | |
ACTGGATCAACCTCGTAAGA+CGG | + | chr7.1:10946578-10946597 | None:intergenic | 45.0% | |
AGATTCCGATCAACTTGCCA+TGG | - | chr7.1:10947283-10947302 | MS.gene018708:CDS | 45.0% | |
AGCTGCAGCAGATATGTCTA+AGG | - | chr7.1:10946742-10946761 | MS.gene018708:CDS | 45.0% | |
CAAAATTCCGAAACCCTGCA+TGG | + | chr7.1:10946498-10946517 | None:intergenic | 45.0% | |
CATGGAATATCATCCGCATC+GGG | - | chr7.1:10947301-10947320 | MS.gene018708:CDS | 45.0% | |
CCAAAACCGGAAGAAGCAAA+GGG | + | chr7.1:10946375-10946394 | None:intergenic | 45.0% | |
CCATGGAATATCATCCGCAT+CGG | - | chr7.1:10947300-10947319 | MS.gene018708:CDS | 45.0% | |
CCTCCAAATGTAGTCTGCTT+GGG | + | chr7.1:10946615-10946634 | None:intergenic | 45.0% | |
CGCATATACTACCACGTTGA+TGG | - | chr7.1:10946137-10946156 | MS.gene018708:CDS | 45.0% | |
CTAGCTGGAAAAATCTCTGC+TGG | + | chr7.1:10947265-10947284 | None:intergenic | 45.0% | |
CTCCAAATGTAGTCTGCTTG+GGG | + | chr7.1:10946614-10946633 | None:intergenic | 45.0% | |
CTGCAATGACTTACTACTCG+CGG | - | chr7.1:10946663-10946682 | MS.gene018708:CDS | 45.0% | |
CTTCTCCTCTTTCTGTGGTT+CGG | + | chr7.1:10946789-10946808 | None:intergenic | 45.0% | |
GACAAGAGTAAAGCAGATGC+AGG | - | chr7.1:10947379-10947398 | MS.gene018708:CDS | 45.0% | |
GACATTATGGTAGCCGAAAG+AGG | + | chr7.1:10946425-10946444 | None:intergenic | 45.0% | |
GAGTAGTAAGTCATTGCAGC+TGG | + | chr7.1:10946662-10946681 | None:intergenic | 45.0% | |
GCTTTCTGTGGAACACTTTC+AGG | - | chr7.1:10946215-10946234 | MS.gene018708:CDS | 45.0% | |
GGTGAGAATGATGAGGAAGT+TGG | - | chr7.1:10947523-10947542 | MS.gene018708:CDS | 45.0% | |
GTAAGACGGAGAATCAAACC+TGG | + | chr7.1:10946564-10946583 | None:intergenic | 45.0% | |
GTGAATGGTGTAGCTTTCTG+TGG | - | chr7.1:10946203-10946222 | MS.gene018708:CDS | 45.0% | |
GTTTGATTCTCCGTCTTACG+AGG | - | chr7.1:10946565-10946584 | MS.gene018708:CDS | 45.0% | |
TACATTGGGAGGCAATGTAC+CGG | + | chr7.1:10946174-10946193 | None:intergenic | 45.0% | |
TCCCTTGTTACCAAGTTGCT+CGG | - | chr7.1:10946113-10946132 | MS.gene018708:CDS | 45.0% | |
TCCTCCAAATGTAGTCTGCT+TGG | + | chr7.1:10946616-10946635 | None:intergenic | 45.0% | |
TGACAACCCTTTGCTTCTTC+CGG | - | chr7.1:10946366-10946385 | MS.gene018708:CDS | 45.0% | |
TGGTATGACCCTCATGATGA+TGG | - | chr7.1:10946289-10946308 | MS.gene018708:CDS | 45.0% | |
TTCCCCAAGCAGACTACATT+TGG | - | chr7.1:10946609-10946628 | MS.gene018708:CDS | 45.0% | |
TTCTTAGTACCCGAGGCAAA+TGG | - | chr7.1:10947478-10947497 | MS.gene018708:CDS | 45.0% | |
TTTCATCTGCATTCAAGGCC+AGG | - | chr7.1:10946543-10946562 | MS.gene018708:CDS | 45.0% | |
! | ACCGAGCAACTTGGTAACAA+GGG | + | chr7.1:10946117-10946136 | None:intergenic | 45.0% |
! | AGTGCATTCATGGTTTGTGC+AGG | + | chr7.1:10946971-10946990 | None:intergenic | 45.0% |
! | CATGCAGGGTTTCGGAATTT+TGG | - | chr7.1:10946496-10946515 | MS.gene018708:CDS | 45.0% |
! | GCGTTGTTATTCTGAGCATG+AGG | + | chr7.1:10947571-10947590 | None:intergenic | 45.0% |
! | TCTTACGAGGTTGATCCAGT+TGG | - | chr7.1:10946578-10946597 | MS.gene018708:CDS | 45.0% |
!! | CAACTTTTCTTTGGCTGGCT+TGG | - | chr7.1:10946239-10946258 | MS.gene018708:CDS | 45.0% |
!! | CAAGTTGATCGGAATCTAGC+TGG | + | chr7.1:10947280-10947299 | None:intergenic | 45.0% |
!!! | TTTTGGCTTGGGTTCGGTAT+TGG | - | chr7.1:10946389-10946408 | MS.gene018708:CDS | 45.0% |
ACAGCAGCTGATACATTGGG+AGG | + | chr7.1:10946185-10946204 | None:intergenic | 50.0% | |
ACATTGGGAGGCAATGTACC+GGG | + | chr7.1:10946173-10946192 | None:intergenic | 50.0% | |
CCCAAGCAGACTACATTTGG+AGG | - | chr7.1:10946612-10946631 | MS.gene018708:CDS | 50.0% | |
CCGATGCGGATGATATTCCA+TGG | + | chr7.1:10947303-10947322 | None:intergenic | 50.0% | |
CGAACCACAGAAAGAGGAGA+AGG | - | chr7.1:10946787-10946806 | MS.gene018708:CDS | 50.0% | |
GCAGTACAGTACCAGGCTAT+TGG | - | chr7.1:10947038-10947057 | MS.gene018708:CDS | 50.0% | |
GCCAAAACCGGAAGAAGCAA+AGG | + | chr7.1:10946376-10946395 | None:intergenic | 50.0% | |
GCGGTATAACGAGCAGTTTC+TGG | + | chr7.1:10946698-10946717 | None:intergenic | 50.0% | |
GCTCTATGCAGTACAGTACC+AGG | - | chr7.1:10947031-10947050 | MS.gene018708:CDS | 50.0% | |
GGAAAGCTTGGGGCTATAGT+TGG | - | chr7.1:10947322-10947341 | MS.gene018708:CDS | 50.0% | |
GGCAAAGACTGCTGCAATGA+AGG | + | chr7.1:10946477-10946496 | None:intergenic | 50.0% | |
GGCAAGAGCAAACATGAAGG+CGG | + | chr7.1:10947131-10947150 | None:intergenic | 50.0% | |
GGTGCTAAATGCGCTTGATG+TGG | - | chr7.1:10946007-10946026 | MS.gene018708:CDS | 50.0% | |
GTATATGCGACCGAGCAACT+TGG | + | chr7.1:10946126-10946145 | None:intergenic | 50.0% | |
GTCTTTGCCATGCAGGGTTT+CGG | - | chr7.1:10946488-10946507 | MS.gene018708:CDS | 50.0% | |
GTGCACTTTCTTAGTACCCG+AGG | - | chr7.1:10947471-10947490 | MS.gene018708:CDS | 50.0% | |
TACCGAACCCAAGCCAAAAC+CGG | + | chr7.1:10946388-10946407 | None:intergenic | 50.0% | |
TGAAGCCGAACCACAGAAAG+AGG | - | chr7.1:10946781-10946800 | MS.gene018708:CDS | 50.0% | |
TGGGGAACAGTTGAACCAAC+TGG | + | chr7.1:10946596-10946615 | None:intergenic | 50.0% | |
! | CAGGGCAACTTTTCTTTGGC+TGG | - | chr7.1:10946234-10946253 | MS.gene018708:CDS | 50.0% |
! | CCCTTTGCTTCTTCCGGTTT+TGG | - | chr7.1:10946372-10946391 | MS.gene018708:CDS | 50.0% |
! | GACCGAGCAACTTGGTAACA+AGG | + | chr7.1:10946118-10946137 | None:intergenic | 50.0% |
! | GCATTCATGGTTTGTGCAGG+TGG | + | chr7.1:10946968-10946987 | None:intergenic | 50.0% |
! | GGGCTATAGTTGGTGCATTC+GGG | - | chr7.1:10947332-10947351 | MS.gene018708:CDS | 50.0% |
! | GGGGCTATAGTTGGTGCATT+CGG | - | chr7.1:10947331-10947350 | MS.gene018708:CDS | 50.0% |
! | TGGTGGTGACTACCCTCTTT+CGG | - | chr7.1:10946409-10946428 | MS.gene018708:CDS | 50.0% |
!! | ACCAGGCTATTGGTTTACCG+TGG | - | chr7.1:10947048-10947067 | MS.gene018708:CDS | 50.0% |
!! | GGCTGGCTTGGTGATAAGAT+GGG | - | chr7.1:10946251-10946270 | MS.gene018708:CDS | 50.0% |
!! | GGTTTCGGAATTTTGGGAGC+TGG | - | chr7.1:10946503-10946522 | MS.gene018708:CDS | 50.0% |
!! | TGGCTGGCTTGGTGATAAGA+TGG | - | chr7.1:10946250-10946269 | MS.gene018708:CDS | 50.0% |
!!! | GCTTCTTCCGGTTTTGGCTT+GGG | - | chr7.1:10946378-10946397 | MS.gene018708:CDS | 50.0% |
!!! | TGCTTCTTCCGGTTTTGGCT+TGG | - | chr7.1:10946377-10946396 | MS.gene018708:CDS | 50.0% |
!!! | TTCCGGTTTTGGCTTGGGTT+CGG | - | chr7.1:10946383-10946402 | MS.gene018708:CDS | 50.0% |
ATCCGCATCGGGAAAGCTTG+GGG | - | chr7.1:10947312-10947331 | MS.gene018708:CDS | 55.0% | |
CATCCGCATCGGGAAAGCTT+GGG | - | chr7.1:10947311-10947330 | MS.gene018708:CDS | 55.0% | |
GCAGCAGTCTTTGCCATGCA+GGG | - | chr7.1:10946482-10946501 | MS.gene018708:CDS | 55.0% | |
GCCACGGTAAACCAATAGCC+TGG | + | chr7.1:10947052-10947071 | None:intergenic | 55.0% | |
TCATCCGCATCGGGAAAGCT+TGG | - | chr7.1:10947310-10947329 | MS.gene018708:CDS | 55.0% | |
TGCAGCAGTCTTTGCCATGC+AGG | - | chr7.1:10946481-10946500 | MS.gene018708:CDS | 55.0% | |
! | TGGCTTGGGTTCGGTATTGG+TGG | - | chr7.1:10946392-10946411 | MS.gene018708:CDS | 55.0% |
!! | GGCTTGGTGATAAGATGGGC+AGG | - | chr7.1:10946255-10946274 | MS.gene018708:CDS | 55.0% |
AGCCCCAAGCTTTCCCGATG+CGG | + | chr7.1:10947317-10947336 | None:intergenic | 60.0% | |
GCTTCGCTGCACCATCAACG+TGG | + | chr7.1:10946151-10946170 | None:intergenic | 60.0% | |
! | GCAGGGTACCCTGCAGGTAT+TGG | - | chr7.1:10947397-10947416 | MS.gene018708:CDS | 60.0% |
!! | GTTGATGGTGCAGCGAAGCC+CGG | - | chr7.1:10946152-10946171 | MS.gene018708:CDS | 60.0% |
! | GCAGATGCAGGGTACCCTGC+AGG | - | chr7.1:10947391-10947410 | MS.gene018708:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 10945987 | 10947600 | 10945987 | ID=MS.gene018708 |
chr7.1 | mRNA | 10945987 | 10947600 | 10945987 | ID=MS.gene018708.t1;Parent=MS.gene018708 |
chr7.1 | exon | 10945987 | 10947600 | 10945987 | ID=MS.gene018708.t1.exon1;Parent=MS.gene018708.t1 |
chr7.1 | CDS | 10945987 | 10947600 | 10945987 | ID=cds.MS.gene018708.t1;Parent=MS.gene018708.t1 |
Gene Sequence |
Protein sequence |