Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01895.t1 | RHN72502.1 | 97.6 | 499 | 12 | 0 | 1 | 499 | 1 | 499 | 5.90E-199 | 703.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01895.t1 | Q6Q152 | 52.4 | 511 | 222 | 5 | 1 | 498 | 1 | 503 | 6.5e-130 | 465.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01895.t1 | A0A396J5D4 | 97.6 | 499 | 12 | 0 | 1 | 499 | 1 | 499 | 4.3e-199 | 703.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene01895 | MS.gene064542 | PPI |
MS.gene055771 | MS.gene01895 | PPI |
MS.gene01895 | MS.gene031671 | PPI |
MS.gene01895 | MS.gene73119 | PPI |
MS.gene035805 | MS.gene01895 | PPI |
MS.gene01895 | MS.gene006634 | PPI |
MS.gene31419 | MS.gene01895 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01895.t1 | MTR_2g023120 | 96.659 | 449 | 15 | 0 | 1 | 449 | 1 | 449 | 0.0 | 887 |
MS.gene01895.t1 | MTR_7g105220 | 53.896 | 154 | 69 | 2 | 14 | 167 | 11 | 162 | 6.85e-48 | 163 |
MS.gene01895.t1 | MTR_2g085075 | 50.968 | 155 | 70 | 3 | 15 | 167 | 464 | 614 | 2.37e-42 | 159 |
MS.gene01895.t1 | MTR_5g015500 | 47.590 | 166 | 85 | 2 | 9 | 174 | 301 | 464 | 5.80e-42 | 157 |
MS.gene01895.t1 | MTR_5g015500 | 47.590 | 166 | 85 | 2 | 9 | 174 | 341 | 504 | 1.76e-41 | 157 |
MS.gene01895.t1 | MTR_8g036015 | 45.283 | 159 | 83 | 3 | 15 | 172 | 3 | 158 | 1.72e-37 | 135 |
MS.gene01895.t1 | MTR_6g084140 | 41.341 | 179 | 91 | 6 | 8 | 174 | 9 | 185 | 1.44e-32 | 131 |
MS.gene01895.t1 | MTR_6g084140 | 42.262 | 168 | 87 | 5 | 15 | 174 | 3 | 168 | 2.27e-32 | 130 |
MS.gene01895.t1 | MTR_8g442420 | 41.667 | 168 | 88 | 5 | 15 | 174 | 3 | 168 | 3.54e-31 | 127 |
MS.gene01895.t1 | MTR_8g040180 | 45.833 | 144 | 67 | 4 | 22 | 156 | 32 | 173 | 2.32e-30 | 117 |
MS.gene01895.t1 | MTR_7g110980 | 45.333 | 150 | 71 | 7 | 22 | 165 | 110 | 254 | 7.08e-27 | 109 |
MS.gene01895.t1 | MTR_8g079690 | 45.270 | 148 | 64 | 6 | 22 | 156 | 18 | 161 | 8.94e-27 | 111 |
MS.gene01895.t1 | MTR_7g095750 | 46.795 | 156 | 59 | 8 | 24 | 163 | 23 | 170 | 1.12e-26 | 114 |
MS.gene01895.t1 | MTR_1g085560 | 45.513 | 156 | 73 | 8 | 15 | 163 | 92 | 242 | 2.13e-26 | 108 |
MS.gene01895.t1 | MTR_7g116340 | 48.031 | 127 | 49 | 5 | 22 | 135 | 18 | 140 | 1.24e-25 | 103 |
MS.gene01895.t1 | MTR_1g117010 | 44.681 | 141 | 69 | 7 | 22 | 157 | 94 | 230 | 1.30e-25 | 105 |
MS.gene01895.t1 | MTR_1g117010 | 44.681 | 141 | 69 | 7 | 22 | 157 | 94 | 230 | 1.30e-25 | 105 |
MS.gene01895.t1 | MTR_4g073650 | 45.522 | 134 | 58 | 5 | 22 | 142 | 60 | 191 | 1.44e-25 | 105 |
MS.gene01895.t1 | MTR_3g463900 | 42.667 | 150 | 63 | 8 | 22 | 156 | 48 | 189 | 1.95e-25 | 103 |
MS.gene01895.t1 | MTR_4g086760 | 40.260 | 154 | 77 | 5 | 22 | 163 | 18 | 168 | 3.41e-23 | 101 |
MS.gene01895.t1 | MTR_3g070500 | 47.619 | 126 | 49 | 6 | 22 | 134 | 78 | 199 | 3.81e-23 | 98.2 |
MS.gene01895.t1 | MTR_4g086760 | 40.260 | 154 | 77 | 5 | 22 | 163 | 18 | 168 | 4.44e-23 | 100 |
MS.gene01895.t1 | MTR_4g086760 | 40.260 | 154 | 77 | 5 | 22 | 163 | 18 | 168 | 5.66e-23 | 100 |
MS.gene01895.t1 | MTR_4g075290 | 44.882 | 127 | 53 | 7 | 22 | 135 | 18 | 140 | 1.64e-21 | 92.0 |
MS.gene01895.t1 | MTR_3g117750 | 44.882 | 127 | 53 | 7 | 22 | 135 | 26 | 148 | 2.48e-21 | 92.0 |
MS.gene01895.t1 | MTR_3g070500 | 46.087 | 115 | 45 | 6 | 22 | 123 | 78 | 188 | 2.03e-17 | 80.9 |
MS.gene01895.t1 | MTR_3g107660 | 40.164 | 122 | 59 | 5 | 26 | 135 | 28 | 147 | 7.95e-15 | 77.8 |
MS.gene01895.t1 | MTR_1g094065 | 30.081 | 123 | 79 | 1 | 13 | 135 | 80 | 195 | 3.07e-14 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01895.t1 | AT4G33060 | 64.008 | 514 | 160 | 7 | 1 | 499 | 1 | 504 | 0.0 | 612 |
MS.gene01895.t1 | AT2G36130 | 50.625 | 160 | 74 | 3 | 9 | 168 | 9 | 163 | 1.26e-46 | 160 |
MS.gene01895.t1 | AT3G44600 | 50.968 | 155 | 70 | 3 | 15 | 167 | 478 | 628 | 1.01e-42 | 160 |
MS.gene01895.t1 | AT5G67530 | 47.561 | 164 | 84 | 2 | 9 | 172 | 340 | 501 | 2.40e-41 | 156 |
MS.gene01895.t1 | AT1G01940 | 46.541 | 159 | 81 | 3 | 15 | 172 | 3 | 158 | 5.97e-39 | 139 |
MS.gene01895.t1 | AT1G53720 | 41.071 | 168 | 89 | 4 | 15 | 174 | 3 | 168 | 6.21e-32 | 129 |
MS.gene01895.t1 | AT1G53720 | 39.459 | 185 | 100 | 5 | 15 | 191 | 3 | 183 | 7.67e-32 | 125 |
MS.gene01895.t1 | AT2G38730 | 44.444 | 144 | 69 | 4 | 22 | 156 | 46 | 187 | 1.96e-27 | 109 |
MS.gene01895.t1 | AT3G56070 | 45.588 | 136 | 55 | 6 | 22 | 144 | 18 | 147 | 1.92e-26 | 105 |
MS.gene01895.t1 | AT3G56070 | 45.588 | 136 | 55 | 6 | 22 | 144 | 18 | 147 | 1.92e-26 | 105 |
MS.gene01895.t1 | AT5G13120 | 43.662 | 142 | 67 | 8 | 22 | 156 | 107 | 242 | 3.72e-26 | 107 |
MS.gene01895.t1 | AT5G13120 | 43.662 | 142 | 67 | 8 | 22 | 156 | 103 | 238 | 4.03e-26 | 107 |
MS.gene01895.t1 | AT4G34870 | 47.692 | 130 | 51 | 7 | 19 | 135 | 15 | 140 | 2.20e-25 | 102 |
MS.gene01895.t1 | AT3G55920 | 50.000 | 126 | 46 | 6 | 22 | 134 | 73 | 194 | 3.17e-25 | 104 |
MS.gene01895.t1 | AT2G15790 | 47.619 | 126 | 52 | 4 | 22 | 135 | 18 | 141 | 1.01e-24 | 105 |
MS.gene01895.t1 | AT5G58710 | 44.000 | 150 | 61 | 9 | 22 | 156 | 49 | 190 | 1.37e-24 | 101 |
MS.gene01895.t1 | AT3G62030 | 44.898 | 147 | 64 | 8 | 22 | 161 | 109 | 245 | 1.51e-24 | 103 |
MS.gene01895.t1 | AT3G62030 | 44.898 | 147 | 64 | 8 | 22 | 161 | 108 | 244 | 1.82e-24 | 102 |
MS.gene01895.t1 | AT2G29960 | 42.105 | 152 | 65 | 8 | 20 | 156 | 44 | 187 | 6.27e-24 | 99.8 |
MS.gene01895.t1 | AT2G29960 | 42.105 | 152 | 65 | 8 | 20 | 156 | 44 | 187 | 6.27e-24 | 99.8 |
MS.gene01895.t1 | AT3G62030 | 43.836 | 146 | 67 | 7 | 22 | 161 | 162 | 298 | 6.37e-24 | 102 |
MS.gene01895.t1 | AT4G34960 | 46.774 | 124 | 53 | 5 | 22 | 134 | 61 | 182 | 1.45e-23 | 99.4 |
MS.gene01895.t1 | AT3G63400 | 41.830 | 153 | 71 | 6 | 24 | 163 | 23 | 170 | 1.70e-23 | 102 |
MS.gene01895.t1 | AT2G21130 | 45.600 | 125 | 55 | 5 | 22 | 135 | 19 | 141 | 4.38e-23 | 96.7 |
MS.gene01895.t1 | AT3G63400 | 45.968 | 124 | 53 | 4 | 24 | 135 | 23 | 144 | 5.42e-23 | 102 |
MS.gene01895.t1 | AT3G63400 | 45.968 | 124 | 53 | 4 | 24 | 135 | 23 | 144 | 5.42e-23 | 102 |
MS.gene01895.t1 | AT3G63400 | 45.968 | 124 | 53 | 4 | 24 | 135 | 23 | 144 | 5.42e-23 | 102 |
MS.gene01895.t1 | AT4G38740 | 44.800 | 125 | 56 | 5 | 22 | 135 | 18 | 140 | 1.34e-22 | 95.1 |
MS.gene01895.t1 | AT2G16600 | 44.961 | 129 | 54 | 7 | 20 | 135 | 17 | 141 | 1.72e-22 | 94.7 |
MS.gene01895.t1 | AT2G29960 | 40.000 | 150 | 61 | 7 | 20 | 156 | 44 | 177 | 8.95e-22 | 93.2 |
MS.gene01895.t1 | AT4G34960 | 46.903 | 113 | 47 | 5 | 22 | 123 | 61 | 171 | 7.01e-20 | 87.4 |
MS.gene01895.t1 | AT2G16600 | 40.708 | 113 | 54 | 3 | 22 | 134 | 19 | 118 | 6.97e-16 | 75.5 |
MS.gene01895.t1 | AT2G47320 | 29.677 | 155 | 93 | 5 | 19 | 168 | 84 | 227 | 3.04e-12 | 66.6 |
MS.gene01895.t1 | AT1G53780 | 42.553 | 94 | 51 | 3 | 82 | 174 | 3 | 94 | 3.67e-12 | 69.3 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATTTACCTTTCCGAAAA+TGG | 0.150107 | 2.2:+62507600 | None:intergenic |
GTAGGAGGTGAGAGTATTTA+TGG | 0.156334 | 2.2:-62507769 | MS.gene01895:intron |
AAAATTGTCCATGAAGAAAA+AGG | 0.233916 | 2.2:-62502296 | MS.gene01895:CDS |
TTGGTTGCTATGGCGAATTC+TGG | 0.248745 | 2.2:-62507694 | MS.gene01895:CDS |
ACCTCAACTGATAATATCTT+TGG | 0.256460 | 2.2:+62506739 | None:intergenic |
TGAGGTTTCTGAAGTGTTCT+TGG | 0.276883 | 2.2:+62506552 | None:intergenic |
TGTTGTACATGACCCACTTT+TGG | 0.294594 | 2.2:-62499474 | MS.gene01895:CDS |
CTCATCACCACTTACGGAAT+TGG | 0.306076 | 2.2:+62502336 | None:intergenic |
AACTGACTTCCATTAGAATT+AGG | 0.306601 | 2.2:+62507667 | None:intergenic |
AATTTGAGTTTGCTTTCATT+TGG | 0.317496 | 2.2:-62506365 | MS.gene01895:CDS |
ATTTGAGTTTGCTTTCATTT+GGG | 0.318683 | 2.2:-62506364 | MS.gene01895:CDS |
AACGAAGTTTCTAACGGCTT+TGG | 0.326965 | 2.2:+62508067 | None:intergenic |
ACGAAGTTTCTAACGGCTTT+GGG | 0.342298 | 2.2:+62508068 | None:intergenic |
ACGGCTTTGGGAGCTTCTTT+AGG | 0.342977 | 2.2:+62508080 | None:intergenic |
AGATTCCGGAGCTGATAAAT+TGG | 0.359133 | 2.2:-62505387 | MS.gene01895:CDS |
CCTCAACTGATAATATCTTT+GGG | 0.360959 | 2.2:+62506740 | None:intergenic |
CGAAAATGCTAATAATGAAT+TGG | 0.376546 | 2.2:-62506246 | MS.gene01895:intron |
CACAGTATGGTTCTCTGGAC+TGG | 0.378881 | 2.2:+62503700 | None:intergenic |
ATGGTTCTCTGGACTGGGCC+TGG | 0.380301 | 2.2:+62503706 | None:intergenic |
ACCTAGCTCTTGACACAGTA+TGG | 0.387700 | 2.2:+62503687 | None:intergenic |
TCTGGAACACCTAATTCTAA+TGG | 0.388962 | 2.2:-62507676 | MS.gene01895:CDS |
TTACTCTTGATCGCTGTGAT+TGG | 0.398021 | 2.2:-62507639 | MS.gene01895:CDS |
GCCCTATCGACATTGAACTA+TGG | 0.399118 | 2.2:-62508103 | MS.gene01895:CDS |
GAAGAGCCTCAGAAAGATTC+CGG | 0.400981 | 2.2:-62505401 | MS.gene01895:CDS |
TGTCTCCTTTGCTGATACCT+TGG | 0.404713 | 2.2:+62499915 | None:intergenic |
ATCGCTGTGATTGGCTTGAT+AGG | 0.407759 | 2.2:-62507630 | MS.gene01895:CDS |
AGAAGCTGAAGAAGAGGAAA+AGG | 0.408796 | 2.2:-62506339 | MS.gene01895:CDS |
TAAGTTTAAGCATAGAGGTT+TGG | 0.414850 | 2.2:-62507713 | MS.gene01895:CDS |
TCATGTACAACATAATCATT+TGG | 0.427856 | 2.2:+62499485 | None:intergenic |
CATTCGTTCAGCTCTTGCTT+CGG | 0.432570 | 2.2:+62502264 | None:intergenic |
GTCACCATCACGTGTAGCTT+TGG | 0.438208 | 2.2:+62506527 | None:intergenic |
CTTGGAACAATGTCCTCAAA+GGG | 0.445735 | 2.2:+62506570 | None:intergenic |
AAACTGACCTTGCCAACTCC+GGG | 0.447636 | 2.2:+62499817 | None:intergenic |
AGACGAGAACGGGAATGGGC+TGG | 0.448205 | 2.2:-62499407 | MS.gene01895:CDS |
ATGAGTACCGGTGCCGGTGC+CGG | 0.451053 | 2.2:+62507962 | None:intergenic |
GACGAGAACGGGAATGGGCT+GGG | 0.454947 | 2.2:-62499406 | MS.gene01895:CDS |
CTTGACACAGTATGGTTCTC+TGG | 0.459594 | 2.2:+62503695 | None:intergenic |
GCATAGAGGTTTGGTTGCTA+TGG | 0.459956 | 2.2:-62507704 | MS.gene01895:CDS |
TGAAGAAGAGGAAAAGGAAT+TGG | 0.461986 | 2.2:-62506333 | MS.gene01895:CDS |
AGTATTTATGGAGATGTGTT+TGG | 0.462260 | 2.2:-62507757 | MS.gene01895:CDS |
ATCTGCTTCATCATCATCAC+TGG | 0.464682 | 2.2:+62505352 | None:intergenic |
AGGATTAAGTTTAAGCATAG+AGG | 0.465524 | 2.2:-62507718 | MS.gene01895:CDS |
CAAACAAAAGAGACGAGAAC+GGG | 0.471510 | 2.2:-62499417 | MS.gene01895:CDS |
TTGATCCTCATCACCACTTA+CGG | 0.472497 | 2.2:+62502330 | None:intergenic |
ATGTTTAGTTTCAACAGTTG+TGG | 0.474502 | 2.2:+62499891 | None:intergenic |
AAGATCGGCAGTTATCTGTA+AGG | 0.480101 | 2.2:-62505445 | MS.gene01895:CDS |
TTCGTTCAACTTTGCCTCGA+AGG | 0.482824 | 2.2:-62508050 | MS.gene01895:CDS |
AGTACCGGTGCCGGTGCCGG+TGG | 0.487274 | 2.2:+62507965 | None:intergenic |
TTTCATCTGCAGGAAGGTCC+AGG | 0.488328 | 2.2:-62503724 | MS.gene01895:intron |
GAATGATCCCCGCCTTCTAA+AGG | 0.489765 | 2.2:-62506270 | MS.gene01895:CDS |
TGCGGTGATCCCACCGGCAC+CGG | 0.492175 | 2.2:-62507975 | MS.gene01895:CDS |
TGTTTAGTTTCAACAGTTGT+GGG | 0.493078 | 2.2:+62499892 | None:intergenic |
GATCCCACCGGCACCGGCAC+CGG | 0.494918 | 2.2:-62507969 | MS.gene01895:intron |
AAAACTGACCTTGCCAACTC+CGG | 0.499053 | 2.2:+62499816 | None:intergenic |
GACACCAGCAGAATCAAGTA+AGG | 0.500281 | 2.2:+62499378 | None:intergenic |
ATGAGCCAATTTATCAGCTC+CGG | 0.505424 | 2.2:+62505382 | None:intergenic |
AAAAGAGACGAGAACGGGAA+TGG | 0.518777 | 2.2:-62499412 | MS.gene01895:CDS |
ACAGTATGGTTCTCTGGACT+GGG | 0.522234 | 2.2:+62503701 | None:intergenic |
GTTCTTGAACCGCCGACAAA+GGG | 0.523237 | 2.2:-62508152 | MS.gene01895:CDS |
AAAGAGACGAGAACGGGAAT+GGG | 0.523623 | 2.2:-62499411 | MS.gene01895:CDS |
GCCAGGTCCAATTCCGTAAG+TGG | 0.529036 | 2.2:-62502343 | MS.gene01895:intron |
TTGGTGATGAGTTTCATTCA+AGG | 0.533369 | 2.2:-62507738 | MS.gene01895:CDS |
TCACGTGTAGCTTTGGTCTG+AGG | 0.536039 | 2.2:+62506534 | None:intergenic |
TGTTCTTGAACCGCCGACAA+AGG | 0.540802 | 2.2:-62508153 | MS.gene01895:CDS |
AGAGGAAAAGGAATTGGCAG+TGG | 0.542128 | 2.2:-62506327 | MS.gene01895:CDS |
GGTGTTGTGGAACCCCTTTG+AGG | 0.543763 | 2.2:-62506583 | MS.gene01895:CDS |
GTCGATAGGGCCGCGCGTGG+TGG | 0.543990 | 2.2:+62508115 | None:intergenic |
TTTGATGATGCGGTGGAAGA+TGG | 0.544507 | 2.2:+62508013 | None:intergenic |
GGGTTAATGAGTACCGGTGC+CGG | 0.544786 | 2.2:+62507956 | None:intergenic |
TACACGTGATGGTGACATTG+AGG | 0.552369 | 2.2:-62506520 | MS.gene01895:CDS |
CCCAAAGATATTATCAGTTG+AGG | 0.554785 | 2.2:-62506740 | MS.gene01895:intron |
GCCATAGTTCAATGTCGATA+GGG | 0.557083 | 2.2:+62508102 | None:intergenic |
GGCCATAGTTCAATGTCGAT+AGG | 0.559401 | 2.2:+62508101 | None:intergenic |
CTCAACTGATAATATCTTTG+GGG | 0.564684 | 2.2:+62506741 | None:intergenic |
TGTTATCGTAATAACCTTCG+AGG | 0.566571 | 2.2:+62508036 | None:intergenic |
CCAAACAAAAGAGACGAGAA+CGG | 0.567719 | 2.2:-62499418 | MS.gene01895:CDS |
CAGAAGAAACGCAGTCGTCA+AGG | 0.568574 | 2.2:-62502178 | MS.gene01895:CDS |
TCTTGGAACAATGTCCTCAA+AGG | 0.568780 | 2.2:+62506569 | None:intergenic |
GTACCGGTGCCGGTGCCGGT+GGG | 0.569934 | 2.2:+62507966 | None:intergenic |
ACACGTGATGGTGACATTGA+GGG | 0.570882 | 2.2:-62506519 | MS.gene01895:CDS |
AGAAGAAACGCAGTCGTCAA+GGG | 0.571151 | 2.2:-62502177 | MS.gene01895:CDS |
TTTGAGTTTGCTTTCATTTG+GGG | 0.572353 | 2.2:-62506363 | MS.gene01895:CDS |
TGGGGAAGAAGCTGAAGAAG+AGG | 0.580822 | 2.2:-62506345 | MS.gene01895:CDS |
AGATCGGCAGTTATCTGTAA+GGG | 0.580956 | 2.2:-62505444 | MS.gene01895:CDS |
ACCATACTGTGTCAAGAGCT+AGG | 0.584110 | 2.2:-62503688 | MS.gene01895:intron |
CTGAGACTGATAAGAATGAT+CGG | 0.586279 | 2.2:-62506774 | MS.gene01895:CDS |
ATCTTCCACCGCATCATCAA+AGG | 0.592166 | 2.2:-62508011 | MS.gene01895:CDS |
TCAGCTCCGGAATCTTTCTG+AGG | 0.592272 | 2.2:+62505395 | None:intergenic |
TAAAACCAAGGTATCAGCAA+AGG | 0.594376 | 2.2:-62499920 | MS.gene01895:CDS |
GTTCAGTGCGGTGATCCCAC+CGG | 0.601022 | 2.2:-62507981 | MS.gene01895:CDS |
GATCCTCTTTGCGAGACATG+TGG | 0.601203 | 2.2:+62499507 | None:intergenic |
AAGTTGAACGAAGTTTCTAA+CGG | 0.602700 | 2.2:+62508061 | None:intergenic |
CTTCTGAATGAAGCTGAGAG+AGG | 0.605073 | 2.2:-62502217 | MS.gene01895:CDS |
CGAAGCAAGAGCTGAACGAA+TGG | 0.607103 | 2.2:-62502263 | MS.gene01895:CDS |
CAGACCAAAGCTACACGTGA+TGG | 0.607190 | 2.2:-62506531 | MS.gene01895:CDS |
ACTGACCTTGCCAACTCCGG+GGG | 0.609005 | 2.2:+62499819 | None:intergenic |
CAATTCCGTAAGTGGTGATG+AGG | 0.609198 | 2.2:-62502335 | MS.gene01895:CDS |
CAGTCGTCAAGGGCGTGAAG+AGG | 0.613464 | 2.2:-62502167 | MS.gene01895:CDS |
TGATGAGGATCAACCAAGAG+TGG | 0.614792 | 2.2:-62502320 | MS.gene01895:CDS |
TGGGATCACCGCACTGAACG+AGG | 0.615522 | 2.2:+62507985 | None:intergenic |
GTGACGAGGAATTAACTGAC+TGG | 0.616573 | 2.2:-62499864 | MS.gene01895:CDS |
AATGTCGATAGGGCCGCGCG+TGG | 0.621054 | 2.2:+62508112 | None:intergenic |
ACTTGAGAAGTTTAAAACCA+AGG | 0.622239 | 2.2:-62499932 | MS.gene01895:CDS |
CGAGGAAGCCTTTGATGATG+CGG | 0.635463 | 2.2:+62508003 | None:intergenic |
AACTGACCTTGCCAACTCCG+GGG | 0.637540 | 2.2:+62499818 | None:intergenic |
GGAAGCCTTTGATGATGCGG+TGG | 0.641097 | 2.2:+62508006 | None:intergenic |
TTGTATAATCTGTTGAGACT+TGG | 0.647058 | 2.2:-62506802 | MS.gene01895:CDS |
GAAGAAGAAGAAGATGTCGA+CGG | 0.647928 | 2.2:-62508180 | None:intergenic |
GGACCACATGTCTCGCAAAG+AGG | 0.660428 | 2.2:-62499510 | MS.gene01895:CDS |
GTGATCGTGACCACCACGCG+CGG | 0.661302 | 2.2:-62508125 | MS.gene01895:CDS |
TCAACTGATAATATCTTTGG+GGG | 0.662673 | 2.2:+62506742 | None:intergenic |
AACTAAACATGCTAGTGACG+AGG | 0.668903 | 2.2:-62499878 | MS.gene01895:CDS |
ACACCAGCAGAATCAAGTAA+GGG | 0.677787 | 2.2:+62499379 | None:intergenic |
TTGGAACAATGTCCTCAAAG+GGG | 0.697040 | 2.2:+62506571 | None:intergenic |
AAAGGCTTCCTCGTTCAGTG+CGG | 0.748457 | 2.2:-62507993 | MS.gene01895:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 62499391 | 62508189 | 62499391 | ID=MS.gene01895 |
chr2.2 | mRNA | 62499391 | 62508189 | 62499391 | ID=MS.gene01895.t1;Parent=MS.gene01895 |
chr2.2 | exon | 62507970 | 62508189 | 62507970 | ID=MS.gene01895.t1.exon1;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62507970 | 62508189 | 62507970 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62507609 | 62507787 | 62507609 | ID=MS.gene01895.t1.exon2;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62507609 | 62507787 | 62507609 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62506741 | 62506839 | 62506741 | ID=MS.gene01895.t1.exon3;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62506741 | 62506839 | 62506741 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62506492 | 62506604 | 62506492 | ID=MS.gene01895.t1.exon4;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62506492 | 62506604 | 62506492 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62506247 | 62506388 | 62506247 | ID=MS.gene01895.t1.exon5;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62506247 | 62506388 | 62506247 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62505270 | 62505492 | 62505270 | ID=MS.gene01895.t1.exon6;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62505270 | 62505492 | 62505270 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62503689 | 62503734 | 62503689 | ID=MS.gene01895.t1.exon7;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62503689 | 62503734 | 62503689 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62502165 | 62502360 | 62502165 | ID=MS.gene01895.t1.exon8;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62502165 | 62502360 | 62502165 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62499825 | 62499965 | 62499825 | ID=MS.gene01895.t1.exon9;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62499825 | 62499965 | 62499825 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
chr2.2 | exon | 62499391 | 62499531 | 62499391 | ID=MS.gene01895.t1.exon10;Parent=MS.gene01895.t1 |
chr2.2 | CDS | 62499391 | 62499531 | 62499391 | ID=cds.MS.gene01895.t1;Parent=MS.gene01895.t1 |
Gene Sequence |
Protein sequence |