AlfalfaGEDB | MS.gene031671

M. sativa cultivar XinJiangDaYe / MS.gene031671

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031671.t1	XP_024638423.1	93.8	439	26	1	1	439	63	500	1.20E-227	798.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031671.t1	Q9ZWA6	52.9	473	158	13	1	439	65	506	1.2e-108	394.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031671.t1	A0A396IAJ3	93.8	439	26	1	1	439	63	500	8.6e-228	798.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene031671.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000494	MS.gene031671	PPI
MS.gene000498	MS.gene031671	PPI
MS.gene002268	MS.gene031671	PPI
MS.gene002271	MS.gene031671	PPI
MS.gene002272	MS.gene031671	PPI
MS.gene002273	MS.gene031671	PPI
MS.gene002275	MS.gene031671	PPI
MS.gene002990	MS.gene031671	PPI
MS.gene003290	MS.gene031671	PPI
MS.gene003378	MS.gene031671	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031671.t1	MTR_2g090745	63.448	435	97	18	1	425	31	413	1.33e-157	452
MS.gene031671.t1	MTR_2g099990	88.571	140	16	0	1	140	1	140	5.41e-94	289
MS.gene031671.t1	MTR_2g099990	88.571	140	16	0	1	140	70	209	5.82e-94	291
MS.gene031671.t1	MTR_8g017210	89.286	140	15	0	1	140	86	225	1.84e-93	291
MS.gene031671.t1	MTR_4g059870	41.202	466	164	16	1	425	62	458	5.88e-93	289
MS.gene031671.t1	MTR_1g112270	45.855	386	165	8	1	362	79	444	1.43e-91	288
MS.gene031671.t1	MTR_1g112270	45.855	386	165	8	1	362	68	433	1.44e-91	288
MS.gene031671.t1	MTR_1g094115	86.232	138	19	0	1	138	71	208	3.07e-90	284
MS.gene031671.t1	MTR_1g016010	80.667	150	28	1	1	149	65	214	4.60e-88	275
MS.gene031671.t1	MTR_1g094115	85.075	134	20	0	5	138	58	191	7.71e-87	275

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031671.t1	AT1G03840	50.833	480	157	13	1	439	63	504	7.65e-135	397
MS.gene031671.t1	AT1G03840	50.833	480	157	13	1	439	65	506	8.15e-135	397
MS.gene031671.t1	AT5G44160	49.894	471	139	15	1	439	61	466	5.33e-130	384
MS.gene031671.t1	AT5G44160	49.894	471	139	15	1	439	22	427	6.80e-130	382
MS.gene031671.t1	AT2G02080	42.694	438	199	8	1	425	1	399	5.79e-95	293
MS.gene031671.t1	AT2G02080	42.694	438	199	8	1	425	1	399	5.79e-95	293
MS.gene031671.t1	AT2G02080	42.694	438	199	8	1	425	78	476	2.24e-94	294
MS.gene031671.t1	AT2G02080	42.694	438	199	8	1	425	78	476	2.24e-94	294
MS.gene031671.t1	AT2G02080	42.694	438	199	8	1	425	78	476	2.24e-94	294
MS.gene031671.t1	AT2G02080	42.694	438	199	8	1	425	78	476	2.24e-94	294

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Find 84 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAGGAAAATGGGT+TGG	0.476598	4.3:-30313078	None:intergenic
AAACAACAGCTCATTATTAA+GGG	0.419725	4.3:+30312993	MS.gene031671:CDS
AAACATTAATGTTAATGTTA+AGG	0.353425	4.3:+30313425	MS.gene031671:CDS
AAACTAGAGGACTATCCCTT+TGG	0.451953	4.3:+30313160	MS.gene031671:CDS
AACAACAGCTCATTATTAAG+GGG	0.621367	4.3:+30312994	MS.gene031671:CDS
AAGATGTTTGATGTGGTATT+TGG	0.298081	4.3:-30313503	None:intergenic
AAGGAATGAAGTATCACTTG+AGG	0.616790	4.3:-30313580	None:intergenic
AAGTCACCAAGTGCCCTTGA+AGG	0.485801	4.3:-30311976	None:intergenic
AATCTACAGCTACATAGACG+TGG	0.700320	4.3:+30311859	MS.gene031671:CDS
AATGATGTGAACAAGTTTGG+TGG	0.623059	4.3:+30313642	MS.gene031671:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGAAGGAAAATGGGT+TGG	-	chr4.3:30313081-30313100	None:intergenic	30.0%
AACAACAGCTCATTATTAAG+GGG	+	chr4.3:30312994-30313013	MS.gene031671:CDS	30.0%
AAGATGTTTGATGTGGTATT+TGG	-	chr4.3:30313506-30313525	None:intergenic	30.0%
ACAAGCCTATATATAGTAGT+TGG	-	chr4.3:30312606-30312625	None:intergenic	30.0%
ACTAATGATGTGAACAAGTT+TGG	+	chr4.3:30313639-30313658	MS.gene031671:CDS	30.0%
AGCTAGACAAAAGTCAAAAT+GGG	-	chr4.3:30312669-30312688	None:intergenic	30.0%
ATGCAAACTAGAATTTCCAT+TGG	-	chr4.3:30313235-30313254	None:intergenic	30.0%
ATTTCAAACCTAAACTTCCA+AGG	-	chr4.3:30313602-30313621	None:intergenic	30.0%
GATCAAGTTTAAAAGTGGTT+AGG	+	chr4.3:30312322-30312341	MS.gene031671:intron	30.0%
GGTAATTACACCAACATAAT+GGG	+	chr4.3:30313024-30313043	MS.gene031671:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	30311802	30313875	30311802	ID=MS.gene031671
chr4.3	mRNA	30311802	30313875	30311802	ID=MS.gene031671.t1;Parent=MS.gene031671
chr4.3	exon	30311802	30312157	30311802	ID=MS.gene031671.t1.exon1;Parent=MS.gene031671.t1
chr4.3	CDS	30311802	30312157	30311802	ID=cds.MS.gene031671.t1;Parent=MS.gene031671.t1
chr4.3	exon	30312912	30313875	30312912	ID=MS.gene031671.t1.exon2;Parent=MS.gene031671.t1
chr4.3	CDS	30312912	30313875	30312912	ID=cds.MS.gene031671.t1;Parent=MS.gene031671.t1

Gene Sequence

>MS.gene031671

ATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAGCTACATAGACGTGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAACAAAGAAATAAAGAAGAGAGTTTATGTGTGTCCAGAGAAAACTTGTGTCCACCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGTAACTAACTACCTAACCTATCCATCCATCTCTATGTTATTCTGATCACATCGTTGTAATCGGTATATCTGATATAAGGATCTCAGTTGCTCGAGAAATTAGTCTCGGCAGTTGTTTGCGGAAATATCTAAGTTTACCAAAAAAAATTATATATCTGATATAAGGATCAAGTTTAAAAGTGGTTAGGCAACTTGAATAATATGTTTTTTTTTGCCTATTTGGCTTTTTTGAGAATAAAAAGTGAATGAGGTTAATTAGTTTAAACAAATGATTAAGGAGTTGATCAAAGATTAATTAAGACACAAGTTTTTGATAAGCCTTTTTGCTGTTTTTGCCCTAAACGACAAAAGTTCATGGTTTGGAGTTATCTCATTTAACCTCACTCACTATGTATATAATTGAGTATTATTTTTGTTTTATTTTCACACTAGTTTGAGGTTGTTAACCAACTACTATATATAGGCTTGTTTGTACAAATCCTTATGCCGTACTCATGTTTCCGGTTACTCCCATTTTGACTTTTGTCTAGCTCTAATCTTTTGTCATAACTGTCTCGTTCTCGAGAATGGTTCGACTGAGAGATAAGTAAAGTCTGATAAAATATCGTTCCCCGCATTTGAACTCTGGTCTTAACCGAAACTCATTAACCAAATCTTTTGGTTGTTCCTTCTAATATTTATATATAAACATTTCTCTTTGTTAAAAAAGTTAAATTATTAGTACTTAATATTTGTGAATATTTTTGGTTGAGCAGGAGAGACAGCTTCATAACTCACAGAGCCTTTTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAGTGCAGCATCAGAAATAAACAACAGCTCATTATTAAGGGGTAACATTGGTAATTACACCAACATAATGGGAACAACATCTCTAGTCCCTAATAACAATATGCCAACCCATTTTCCTTCAATTTTCAAACCAATTTCAACTCCTGATCATCATCATCATCATCATCATCATGAATCAACCAATCAAACTAGAGGACTATCCCTTTGGATGAATCAAAATTCTCATTCTCAACCTCATGAAACAATGATAACCACCACCAATGGAAATTCTAGTTTGCATGAGATTCATCAACAACTTGACTCATCATCAAGAGAAATTATGTATGGTGGAAATGAGAACCCTCCACCATATTCTAATAACTATCAGCTAAATTGGGTTTTTGGAACTAAACTTTCAAACAATTGCAGCCAAGAATTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATGTTTCTCATGATGCTACAAGCCAACAAATTTCTTCCTTGTATAGCTCACAACACCAAATACCACATCAAACATCTTCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACCTCAAGTGATACTTCATTCCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAGTACTAATGATGTGAACAAGTTTGGTGGTACTGGTATGTATGGTACTTCAAGTTCATTACTCATTAGTCTTGGCAATGAGGAAGATCATAATAATGCATGTGATTTTTCACAAATGCACCCTTCTAAACGTAGACATGTGCAAGGTGAAGAGAATGGAGGAGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCACCCTTCATCAATCAACGGTTGGATTTGA

Protein sequence

>MS.gene031671.t1

MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNSSLLRGNIGNYTNIMGTTSLVPNNNMPTHFPSIFKPISTPDHHHHHHHHESTNQTRGLSLWMNQNSHSQPHETMITTTNGNSSLHEIHQQLDSSSREIMYGGNENPPPYSNNYQLNWVFGTKLSNNCSQELITSTTTSLPLGNINVNVKDVSHDATSQQISSLYSSQHQIPHQTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNSTNDVNKFGGTGMYGTSSSLLISLGNEEDHNNACDFSQMHPSKRRHVQGEENGGGGQTRDFLGVGVQTICHPSSINGWI