AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031671


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031671.t1 MTR_2g090745 63.448 435 97 18 1 425 31 413 1.33e-157 452
MS.gene031671.t1 MTR_2g099990 88.571 140 16 0 1 140 1 140 5.41e-94 289
MS.gene031671.t1 MTR_2g099990 88.571 140 16 0 1 140 70 209 5.82e-94 291
MS.gene031671.t1 MTR_8g017210 89.286 140 15 0 1 140 86 225 1.84e-93 291
MS.gene031671.t1 MTR_4g059870 41.202 466 164 16 1 425 62 458 5.88e-93 289
MS.gene031671.t1 MTR_1g112270 45.855 386 165 8 1 362 79 444 1.43e-91 288
MS.gene031671.t1 MTR_1g112270 45.855 386 165 8 1 362 68 433 1.44e-91 288
MS.gene031671.t1 MTR_1g094115 86.232 138 19 0 1 138 71 208 3.07e-90 284
MS.gene031671.t1 MTR_1g016010 80.667 150 28 1 1 149 65 214 4.60e-88 275
MS.gene031671.t1 MTR_1g094115 85.075 134 20 0 5 138 58 191 7.71e-87 275
MS.gene031671.t1 MTR_2g093960 68.208 173 45 2 1 172 56 219 3.04e-85 267
MS.gene031671.t1 MTR_2g017720 82.178 101 13 1 1 101 337 432 6.67e-51 178
MS.gene031671.t1 MTR_3g102000 81.395 86 13 1 13 98 49 131 2.71e-42 149
MS.gene031671.t1 MTR_1g093095 33.557 149 86 5 1 137 110 257 8.62e-17 80.9
MS.gene031671.t1 MTR_5g030560 83.871 31 5 0 1 31 30 60 7.83e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031671.t1 AT1G03840 50.833 480 157 13 1 439 63 504 7.65e-135 397
MS.gene031671.t1 AT1G03840 50.833 480 157 13 1 439 65 506 8.15e-135 397
MS.gene031671.t1 AT5G44160 49.894 471 139 15 1 439 61 466 5.33e-130 384
MS.gene031671.t1 AT5G44160 49.894 471 139 15 1 439 22 427 6.80e-130 382
MS.gene031671.t1 AT2G02080 42.694 438 199 8 1 425 1 399 5.79e-95 293
MS.gene031671.t1 AT2G02080 42.694 438 199 8 1 425 1 399 5.79e-95 293
MS.gene031671.t1 AT2G02080 42.694 438 199 8 1 425 78 476 2.24e-94 294
MS.gene031671.t1 AT2G02080 42.694 438 199 8 1 425 78 476 2.24e-94 294
MS.gene031671.t1 AT2G02080 42.694 438 199 8 1 425 78 476 2.24e-94 294
MS.gene031671.t1 AT2G02080 42.694 438 199 8 1 425 78 476 2.24e-94 294
MS.gene031671.t1 AT3G50700 87.770 139 17 0 1 139 58 196 5.02e-94 291
MS.gene031671.t1 AT5G66730 87.050 139 18 0 1 139 56 194 9.99e-93 289
MS.gene031671.t1 AT5G03150 76.163 172 35 3 1 168 77 246 1.15e-91 286
MS.gene031671.t1 AT3G45260 77.301 163 32 2 1 158 63 225 2.49e-90 281
MS.gene031671.t1 AT3G45260 77.301 163 32 2 1 158 63 225 2.49e-90 281
MS.gene031671.t1 AT3G13810 88.571 140 15 1 1 139 94 233 8.34e-90 282
MS.gene031671.t1 AT3G13810 88.571 140 15 1 1 139 94 233 8.34e-90 282
MS.gene031671.t1 AT3G13810 88.571 140 15 1 1 139 75 214 8.48e-90 281
MS.gene031671.t1 AT3G13810 88.571 140 15 1 1 139 89 228 9.42e-90 281
MS.gene031671.t1 AT3G13810 88.571 140 15 1 1 139 81 220 1.10e-89 281
MS.gene031671.t1 AT1G14580 84.173 139 22 0 1 139 77 215 1.11e-89 280
MS.gene031671.t1 AT1G14580 84.173 139 22 0 1 139 77 215 1.11e-89 280
MS.gene031671.t1 AT3G13810 88.571 140 15 1 1 139 95 234 1.46e-89 281
MS.gene031671.t1 AT1G14580 84.173 139 22 0 1 139 91 229 1.69e-89 280
MS.gene031671.t1 AT2G02070 84.892 139 21 0 1 139 76 214 2.14e-89 283
MS.gene031671.t1 AT2G02070 84.892 139 21 0 1 139 76 214 2.14e-89 283
MS.gene031671.t1 AT1G55110 85.816 141 19 1 1 140 87 227 6.68e-89 278
MS.gene031671.t1 AT1G55110 85.816 141 19 1 1 140 87 227 6.68e-89 278
MS.gene031671.t1 AT1G55110 85.816 141 19 1 1 140 87 227 6.68e-89 278
MS.gene031671.t1 AT4G02670 80.405 148 28 1 1 147 79 226 2.07e-86 270
MS.gene031671.t1 AT4G02670 80.405 148 28 1 1 147 77 224 2.47e-86 270
MS.gene031671.t1 AT5G60470 62.245 196 58 3 1 182 59 252 4.05e-86 270
MS.gene031671.t1 AT5G60470 62.245 196 58 3 1 182 68 261 9.21e-86 270
MS.gene031671.t1 AT5G60470 62.245 196 58 3 1 182 64 257 9.99e-86 270
MS.gene031671.t1 AT1G68130 65.152 132 44 2 1 130 65 196 6.09e-58 196
MS.gene031671.t1 AT2G01940 64.925 134 45 2 1 132 68 201 6.86e-58 197
MS.gene031671.t1 AT1G25250 40.154 259 133 5 1 246 34 283 4.36e-56 189
MS.gene031671.t1 AT1G25250 40.154 259 133 5 1 246 57 306 5.35e-56 190
MS.gene031671.t1 AT2G01940 63.704 135 46 3 1 132 68 202 5.13e-54 186
MS.gene031671.t1 AT1G68130 66.364 110 35 2 23 130 1 110 8.48e-46 162
MS.gene031671.t1 AT2G01940 66.071 112 36 2 23 132 1 112 2.61e-45 161
MS.gene031671.t1 AT1G25250 38.912 239 120 6 23 246 1 228 1.60e-43 155
MS.gene031671.t1 AT1G34370 31.383 188 102 5 1 161 29 216 6.98e-21 92.8
MS.gene031671.t1 AT1G34370 31.383 188 102 5 1 161 239 426 9.47e-21 95.1
MS.gene031671.t1 AT1G34370 31.383 188 102 5 1 161 239 426 9.47e-21 95.1
MS.gene031671.t1 AT5G22890 33.566 143 81 3 1 129 212 354 1.60e-20 93.2
MS.gene031671.t1 AT1G13290 33.557 149 87 5 1 138 96 243 5.89e-17 81.6
MS.gene031671.t1 AT1G34790 34.615 156 85 5 6 145 145 299 1.53e-16 80.5
MS.gene031671.t1 AT3G20880 32.609 138 83 4 1 129 251 387 2.64e-16 80.9
MS.gene031671.t1 AT3G57670 30.303 165 97 5 1 148 212 375 6.05e-16 79.7
MS.gene031671.t1 AT1G08290 36.296 135 75 5 5 129 179 312 9.36e-16 78.6
MS.gene031671.t1 AT1G51220 31.884 138 84 4 1 129 173 309 1.46e-15 78.2

Find 84 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATAACTATCAGCTAAAT+TGG 0.096349 4.3:+30313328 MS.gene031671:CDS
GTTTGAAAATTGAAGGAAAA+TGG 0.140606 4.3:-30313083 None:intergenic
TGGGTTGGCATATTGTTATT+AGG 0.224791 4.3:-30313063 None:intergenic
TAAACAACAGCTCATTATTA+AGG 0.225341 4.3:+30312992 MS.gene031671:CDS
ACTTCATTCCTTGGAAGTTT+AGG 0.253137 4.3:+30313591 MS.gene031671:CDS
AGGGCACTTGGTGACTTAAC+TGG 0.259047 4.3:+30311982 MS.gene031671:CDS
AGCTGATAGTTATTAGAATA+TGG 0.265620 4.3:-30313321 None:intergenic
TGGTAATTACACCAACATAA+TGG 0.296549 4.3:+30313023 MS.gene031671:CDS
AAGATGTTTGATGTGGTATT+TGG 0.298081 4.3:-30313503 None:intergenic
GGGTTGGCATATTGTTATTA+GGG 0.301259 4.3:-30313062 None:intergenic
TAGTACTAGTAATTAATTCT+TGG 0.306930 4.3:-30313383 None:intergenic
AAACATTAATGTTAATGTTA+AGG 0.353425 4.3:+30313425 MS.gene031671:CDS
TGATGATCAGGAGTTGAAAT+TGG 0.355744 4.3:-30313105 None:intergenic
TGCACATGTCTACGTTTAGA+AGG 0.356777 4.3:-30313756 None:intergenic
GGTAATTACACCAACATAAT+GGG 0.361813 4.3:+30313024 MS.gene031671:CDS
GGATAGTCCTCTAGTTTGAT+TGG 0.388786 4.3:-30313154 None:intergenic
TCAAGTGATACTTCATTCCT+TGG 0.409861 4.3:+30313582 MS.gene031671:CDS
TATACAAGGAAGAAATTTGT+TGG 0.410040 4.3:-30313470 None:intergenic
TAATAACTATCAGCTAAATT+GGG 0.410339 4.3:+30313329 MS.gene031671:CDS
GAAATTGGTTTGAAAATTGA+AGG 0.411531 4.3:-30313090 None:intergenic
AAACAACAGCTCATTATTAA+GGG 0.419725 4.3:+30312993 MS.gene031671:CDS
CCTTGCTGTTTCTTCTGCTA+AGG 0.425077 4.3:-30312950 None:intergenic
ATGGAGGAGGAGGGCAAACT+AGG 0.425755 4.3:+30313790 MS.gene031671:CDS
TTTGAAAATTGAAGGAAAAT+GGG 0.430601 4.3:-30313082 None:intergenic
GTGTCCACCATGATCCTTCA+AGG 0.447211 4.3:+30311962 MS.gene031671:CDS
AAACTAGAGGACTATCCCTT+TGG 0.451953 4.3:+30313160 MS.gene031671:CDS
GTTCTCTGCTTAAGCTTCCA+TGG 0.456088 4.3:-30311892 None:intergenic
ACTAATGATGTGAACAAGTT+TGG 0.457937 4.3:+30313639 MS.gene031671:CDS
GTTATGCTGTTCAGTCAGAT+TGG 0.460465 4.3:+30312070 MS.gene031671:CDS
GTGAACAAGTTTGGTGGTAC+TGG 0.464971 4.3:+30313648 MS.gene031671:CDS
TTCTGCTAAGGCATCACAAA+AGG 0.465130 4.3:-30312938 None:intergenic
AAAATTGAAGGAAAATGGGT+TGG 0.476598 4.3:-30313078 None:intergenic
ATCCAACCGTTGATTGATGA+AGG 0.480114 4.3:-30313849 None:intergenic
AAGTCACCAAGTGCCCTTGA+AGG 0.485801 4.3:-30311976 None:intergenic
CAAGGTGAAGAGAATGGAGG+AGG 0.488030 4.3:+30313777 MS.gene031671:CDS
GGTGAAGAGAATGGAGGAGG+AGG 0.498727 4.3:+30313780 MS.gene031671:CDS
AGTTCATTACTCATTAGTCT+TGG 0.500073 4.3:+30313687 MS.gene031671:CDS
TTTGGTGGTACTGGTATGTA+TGG 0.508130 4.3:+30313657 MS.gene031671:CDS
CAAACTAGAATTTCCATTGG+TGG 0.513839 4.3:-30313229 None:intergenic
CATGATCCTTCAAGGGCACT+TGG 0.515364 4.3:+30311970 MS.gene031671:CDS
ACCCTTCATCAATCAACGGT+TGG 0.521243 4.3:+30313847 MS.gene031671:CDS
ACTAGAATTTCCATTGGTGG+TGG 0.523314 4.3:-30313226 None:intergenic
GGGCACTTGGTGACTTAACT+GGG 0.533578 4.3:+30311983 MS.gene031671:CDS
GAAAGCATGGTGAAAAGAAG+TGG 0.534661 4.3:+30312025 MS.gene031671:CDS
TCATCAAGAGAAATTATGTA+TGG 0.535107 4.3:+30313279 MS.gene031671:CDS
AGATGTTGTTCCCATTATGT+TGG 0.540728 4.3:-30313034 None:intergenic
CAAGTGCCCTTGAAGGATCA+TGG 0.541455 4.3:-30311969 None:intergenic
TGGAGGAGGAGGGCAAACTA+GGG 0.541684 4.3:+30313791 MS.gene031671:CDS
GATTGATGAAGGGTGACAAA+TGG 0.546230 4.3:-30313838 None:intergenic
ACAATGATAACCACCACCAA+TGG 0.547801 4.3:+30313216 MS.gene031671:CDS
TAGTTATTAGAATATGGTGG+AGG 0.547810 4.3:-30313315 None:intergenic
GTGGTTATCATTGTTTCATG+AGG 0.548154 4.3:-30313207 None:intergenic
ACTCATTAGTCTTGGCAATG+AGG 0.548463 4.3:+30313695 MS.gene031671:CDS
ATGCAAACTAGAATTTCCAT+TGG 0.550334 4.3:-30313232 None:intergenic
ATTTCAAACCTAAACTTCCA+AGG 0.550495 4.3:-30313599 None:intergenic
TCAAGAGAAATTATGTATGG+TGG 0.557028 4.3:+30313282 MS.gene031671:CDS
TTGTGTGAAACATGTGGGAA+AGG 0.560203 4.3:+30311820 MS.gene031671:CDS
TTGGTGTTGTGAGCTATACA+AGG 0.564753 4.3:-30313484 None:intergenic
GACGTGGACATAATCTTCCA+TGG 0.576178 4.3:+30311875 MS.gene031671:CDS
TCATTATTAAGGGGTAACAT+TGG 0.591412 4.3:+30313003 MS.gene031671:CDS
GCACATGTCTACGTTTAGAA+GGG 0.592522 4.3:-30313755 None:intergenic
TGTCACCCTTCATCAATCAA+CGG 0.597702 4.3:+30313843 MS.gene031671:CDS
CATGTGCAAGGTGAAGAGAA+TGG 0.598271 4.3:+30313771 MS.gene031671:CDS
AGTTATTAGAATATGGTGGA+GGG 0.602415 4.3:-30313314 None:intergenic
GTGAAGAGAATGGAGGAGGA+GGG 0.608002 4.3:+30313781 MS.gene031671:CDS
AAGGAATGAAGTATCACTTG+AGG 0.616790 4.3:-30313580 None:intergenic
TTAACATTAATGTTTCCTAG+TGG 0.620526 4.3:-30313417 None:intergenic
AACAACAGCTCATTATTAAG+GGG 0.621367 4.3:+30312994 MS.gene031671:CDS
AATGATGTGAACAAGTTTGG+TGG 0.623059 4.3:+30313642 MS.gene031671:CDS
TCCAACCGTTGATTGATGAA+GGG 0.630023 4.3:-30313848 None:intergenic
TGTCCACCATGATCCTTCAA+GGG 0.631692 4.3:+30311963 MS.gene031671:CDS
GAATCAACCAATCAAACTAG+AGG 0.641739 4.3:+30313147 MS.gene031671:CDS
TGATAGTTATTAGAATATGG+TGG 0.647387 4.3:-30313318 None:intergenic
CCTTAGCAGAAGAAACAGCA+AGG 0.647661 4.3:+30312950 MS.gene031671:CDS
TTTGCTGAAGATGTTTGATG+TGG 0.648760 4.3:-30313510 None:intergenic
ACTACAACTTCACTTCCACT+AGG 0.649669 4.3:+30313402 MS.gene031671:CDS
GATTCTTGTGTGAAACATGT+GGG 0.660378 4.3:+30311815 MS.gene031671:CDS
AGATTCTTGTGTGAAACATG+TGG 0.668573 4.3:+30311814 MS.gene031671:CDS
AGAGAATACAAATGTGACTG+TGG 0.675625 4.3:+30312120 MS.gene031671:CDS
TCTAAACGTAGACATGTGCA+AGG 0.685474 4.3:+30313759 MS.gene031671:CDS
CTTAGCAGAAGAAACAGCAA+GGG 0.690135 4.3:+30312951 MS.gene031671:CDS
AATCTACAGCTACATAGACG+TGG 0.700320 4.3:+30311859 MS.gene031671:CDS
GTGCAAGGTGAAGAGAATGG+AGG 0.708411 4.3:+30313774 MS.gene031671:CDS
GTGCCCTTGAAGGATCATGG+TGG 0.739339 4.3:-30311966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATATATCTGATATA+AGG + chr4.3:30312300-30312319 MS.gene031671:intron 10.0%
!! GTTTATATATAAATATTAGA+AGG - chr4.3:30312826-30312845 None:intergenic 10.0%
!!! ATCAGATATATAATTTTTTT+TGG - chr4.3:30312297-30312316 None:intergenic 10.0%
!!! TTAATATTTGTGAATATTTT+TGG + chr4.3:30312881-30312900 MS.gene031671:intron 10.0%
!! AAACATTAATGTTAATGTTA+AGG + chr4.3:30313425-30313444 MS.gene031671:CDS 15.0%
!! TTAGTTTAAACAAATGATTA+AGG + chr4.3:30312412-30312431 MS.gene031671:intron 15.0%
!! TAATAACTATCAGCTAAATT+GGG + chr4.3:30313329-30313348 MS.gene031671:CDS 20.0%
!! TAGTACTAGTAATTAATTCT+TGG - chr4.3:30313386-30313405 None:intergenic 20.0%
!! TTTGAAAATTGAAGGAAAAT+GGG - chr4.3:30313085-30313104 None:intergenic 20.0%
!!! TATGTTTTTTTTTGCCTATT+TGG + chr4.3:30312357-30312376 MS.gene031671:intron 20.0%
! AAACAACAGCTCATTATTAA+GGG + chr4.3:30312993-30313012 MS.gene031671:CDS 25.0%
! AATTATATACATAGTGAGTG+AGG - chr4.3:30312538-30312557 None:intergenic 25.0%
! AGCTGATAGTTATTAGAATA+TGG - chr4.3:30313324-30313343 None:intergenic 25.0%
! ATAAGGATCAAGTTTAAAAG+TGG + chr4.3:30312317-30312336 MS.gene031671:intron 25.0%
! CTAATAACTATCAGCTAAAT+TGG + chr4.3:30313328-30313347 MS.gene031671:CDS 25.0%
! GTTAACCAACTACTATATAT+AGG + chr4.3:30312598-30312617 MS.gene031671:intron 25.0%
! GTTTGAAAATTGAAGGAAAA+TGG - chr4.3:30313086-30313105 None:intergenic 25.0%
! TAAACAACAGCTCATTATTA+AGG + chr4.3:30312992-30313011 MS.gene031671:CDS 25.0%
! TAATCGGTATATCTGATATA+AGG + chr4.3:30312214-30312233 MS.gene031671:intron 25.0%
! TATACAAGGAAGAAATTTGT+TGG - chr4.3:30313473-30313492 None:intergenic 25.0%
! TATTCTCAAAAAAGCCAAAT+AGG - chr4.3:30312374-30312393 None:intergenic 25.0%
! TCATCAAGAGAAATTATGTA+TGG + chr4.3:30313279-30313298 MS.gene031671:CDS 25.0%
! TGATAGTTATTAGAATATGG+TGG - chr4.3:30313321-30313340 None:intergenic 25.0%
! TTAACATTAATGTTTCCTAG+TGG - chr4.3:30313420-30313439 None:intergenic 25.0%
! TTGAGAATAAAAAGTGAATG+AGG + chr4.3:30312385-30312404 MS.gene031671:intron 25.0%
!! AACTCATTAACCAAATCTTT+TGG + chr4.3:30312795-30312814 MS.gene031671:intron 25.0%
!! AAGATTTGGTTAATGAGTTT+CGG - chr4.3:30312794-30312813 None:intergenic 25.0%
!!! AGAATTTTGATTCATCCAAA+GGG - chr4.3:30313178-30313197 None:intergenic 25.0%
!!! GAAATTGGTTTGAAAATTGA+AGG - chr4.3:30313093-30313112 None:intergenic 25.0%
!!! TTTATTTTCACACTAGTTTG+AGG + chr4.3:30312573-30312592 MS.gene031671:intron 25.0%
AAAATTGAAGGAAAATGGGT+TGG - chr4.3:30313081-30313100 None:intergenic 30.0%
AACAACAGCTCATTATTAAG+GGG + chr4.3:30312994-30313013 MS.gene031671:CDS 30.0%
AAGATGTTTGATGTGGTATT+TGG - chr4.3:30313506-30313525 None:intergenic 30.0%
ACAAGCCTATATATAGTAGT+TGG - chr4.3:30312606-30312625 None:intergenic 30.0%
ACTAATGATGTGAACAAGTT+TGG + chr4.3:30313639-30313658 MS.gene031671:CDS 30.0%
AGCTAGACAAAAGTCAAAAT+GGG - chr4.3:30312669-30312688 None:intergenic 30.0%
ATGCAAACTAGAATTTCCAT+TGG - chr4.3:30313235-30313254 None:intergenic 30.0%
ATTTCAAACCTAAACTTCCA+AGG - chr4.3:30313602-30313621 None:intergenic 30.0%
GATCAAGTTTAAAAGTGGTT+AGG + chr4.3:30312322-30312341 MS.gene031671:intron 30.0%
GGTAATTACACCAACATAAT+GGG + chr4.3:30313024-30313043 MS.gene031671:CDS 30.0%
TAGTTATTAGAATATGGTGG+AGG - chr4.3:30313318-30313337 None:intergenic 30.0%
TCAAGAGAAATTATGTATGG+TGG + chr4.3:30313282-30313301 MS.gene031671:CDS 30.0%
TCATTATTAAGGGGTAACAT+TGG + chr4.3:30313003-30313022 MS.gene031671:CDS 30.0%
TGATCAGAATAACATAGAGA+TGG - chr4.3:30312186-30312205 None:intergenic 30.0%
TGGTAATTACACCAACATAA+TGG + chr4.3:30313023-30313042 MS.gene031671:CDS 30.0%
TTACAAAAAGCTGCTCAAAT+TGG + chr4.3:30313552-30313571 MS.gene031671:CDS 30.0%
! AGTTATTAGAATATGGTGGA+GGG - chr4.3:30313317-30313336 None:intergenic 30.0%
! AGTTCATTACTCATTAGTCT+TGG + chr4.3:30313687-30313706 MS.gene031671:CDS 30.0%
! TATCAGCTAAATTGGGTTTT+TGG + chr4.3:30313336-30313355 MS.gene031671:CDS 30.0%
!!! GAGAATTTTGATTCATCCAA+AGG - chr4.3:30313179-30313198 None:intergenic 30.0%
AAAGCTCACTCAAAAACATG+TGG + chr4.3:30312093-30312112 MS.gene031671:CDS 35.0%
AAAGTCAAAATGGGAGTAAC+CGG - chr4.3:30312660-30312679 None:intergenic 35.0%
AACGACAAAAGTTCATGGTT+TGG + chr4.3:30312497-30312516 MS.gene031671:intron 35.0%
AATGATGTGAACAAGTTTGG+TGG + chr4.3:30313642-30313661 MS.gene031671:CDS 35.0%
ACTTCATTCCTTGGAAGTTT+AGG + chr4.3:30313591-30313610 MS.gene031671:CDS 35.0%
AGAGAATACAAATGTGACTG+TGG + chr4.3:30312120-30312139 MS.gene031671:CDS 35.0%
AGATGTTGTTCCCATTATGT+TGG - chr4.3:30313037-30313056 None:intergenic 35.0%
AGATTCTTGTGTGAAACATG+TGG + chr4.3:30311814-30311833 MS.gene031671:CDS 35.0%
CAAACTAGAATTTCCATTGG+TGG - chr4.3:30313232-30313251 None:intergenic 35.0%
CAGAATAACATAGAGATGGA+TGG - chr4.3:30312182-30312201 None:intergenic 35.0%
GAAGGAACAACCAAAAGATT+TGG - chr4.3:30312808-30312827 None:intergenic 35.0%
GAATCAACCAATCAAACTAG+AGG + chr4.3:30313147-30313166 MS.gene031671:CDS 35.0%
GAGCTAGACAAAAGTCAAAA+TGG - chr4.3:30312670-30312689 None:intergenic 35.0%
GATTCTTGTGTGAAACATGT+GGG + chr4.3:30311815-30311834 MS.gene031671:CDS 35.0%
GTGGTTATCATTGTTTCATG+AGG - chr4.3:30313210-30313229 None:intergenic 35.0%
TAACATAGAGATGGATGGAT+AGG - chr4.3:30312177-30312196 None:intergenic 35.0%
TCAAGTGATACTTCATTCCT+TGG + chr4.3:30313582-30313601 MS.gene031671:CDS 35.0%
TCTGATCACATCGTTGTAAT+CGG + chr4.3:30312198-30312217 MS.gene031671:intron 35.0%
TGATGATCAGGAGTTGAAAT+TGG - chr4.3:30313108-30313127 None:intergenic 35.0%
TTAAGACCAGAGTTCAAATG+CGG - chr4.3:30312771-30312790 None:intergenic 35.0%
TTAGGGCAAAAACAGCAAAA+AGG - chr4.3:30312478-30312497 None:intergenic 35.0%
TTTGCTGAAGATGTTTGATG+TGG - chr4.3:30313513-30313532 None:intergenic 35.0%
! AAGCACTTTTGTAGAAAGCA+TGG + chr4.3:30312012-30312031 MS.gene031671:CDS 35.0%
! AAGGAATGAAGTATCACTTG+AGG - chr4.3:30313583-30313602 None:intergenic 35.0%
! ACTGTGGAACTATCTTTTCA+AGG + chr4.3:30312136-30312155 MS.gene031671:CDS 35.0%
! GGGTTGGCATATTGTTATTA+GGG - chr4.3:30313065-30313084 None:intergenic 35.0%
! TGATGATGATGATGATGATC+AGG - chr4.3:30313120-30313139 None:intergenic 35.0%
!! ACCATGAACTTTTGTCGTTT+AGG - chr4.3:30312496-30312515 None:intergenic 35.0%
!! CCATGAACTTTTGTCGTTTA+GGG - chr4.3:30312495-30312514 None:intergenic 35.0%
!! TGGGTTGGCATATTGTTATT+AGG - chr4.3:30313066-30313085 None:intergenic 35.0%
!!! GTGAATATTTTTGGTTGAGC+AGG + chr4.3:30312890-30312909 MS.gene031671:intron 35.0%
AAACTAGAGGACTATCCCTT+TGG + chr4.3:30313160-30313179 MS.gene031671:CDS 40.0%
AATCTACAGCTACATAGACG+TGG + chr4.3:30311859-30311878 MS.gene031671:CDS 40.0%
ACAATGATAACCACCACCAA+TGG + chr4.3:30313216-30313235 MS.gene031671:CDS 40.0%
ACTACAACTTCACTTCCACT+AGG + chr4.3:30313402-30313421 MS.gene031671:CDS 40.0%
ACTAGAATTTCCATTGGTGG+TGG - chr4.3:30313229-30313248 None:intergenic 40.0%
AGTAACCGGAAACATGAGTA+CGG - chr4.3:30312646-30312665 None:intergenic 40.0%
CCCTAAACGACAAAAGTTCA+TGG + chr4.3:30312492-30312511 MS.gene031671:intron 40.0%
CTTAGCAGAAGAAACAGCAA+GGG + chr4.3:30312951-30312970 MS.gene031671:CDS 40.0%
GATTGATGAAGGGTGACAAA+TGG - chr4.3:30313841-30313860 None:intergenic 40.0%
GCACATGTCTACGTTTAGAA+GGG - chr4.3:30313758-30313777 None:intergenic 40.0%
GTTATGCTGTTCAGTCAGAT+TGG + chr4.3:30312070-30312089 MS.gene031671:CDS 40.0%
TAAGACCAGAGTTCAAATGC+GGG - chr4.3:30312770-30312789 None:intergenic 40.0%
TAGAGATGGATGGATAGGTT+AGG - chr4.3:30312172-30312191 None:intergenic 40.0%
TCTAAACGTAGACATGTGCA+AGG + chr4.3:30313759-30313778 MS.gene031671:CDS 40.0%
TGCACATGTCTACGTTTAGA+AGG - chr4.3:30313759-30313778 None:intergenic 40.0%
TGTCACCCTTCATCAATCAA+CGG + chr4.3:30313843-30313862 MS.gene031671:CDS 40.0%
TTATGCCGTACTCATGTTTC+CGG + chr4.3:30312638-30312657 MS.gene031671:intron 40.0%
TTGTGTGAAACATGTGGGAA+AGG + chr4.3:30311820-30311839 MS.gene031671:CDS 40.0%
! ATCCAACCGTTGATTGATGA+AGG - chr4.3:30313852-30313871 None:intergenic 40.0%
! GAAAGCATGGTGAAAAGAAG+TGG + chr4.3:30312025-30312044 MS.gene031671:CDS 40.0%
! GGATAGTCCTCTAGTTTGAT+TGG - chr4.3:30313157-30313176 None:intergenic 40.0%
! GTTGCTCGAGAAATTAGTCT+CGG + chr4.3:30312243-30312262 MS.gene031671:intron 40.0%
! TCCAACCGTTGATTGATGAA+GGG - chr4.3:30313851-30313870 None:intergenic 40.0%
! TTCTGCTAAGGCATCACAAA+AGG - chr4.3:30312941-30312960 None:intergenic 40.0%
!! ACTAGGGATTTTCTTGGTGT+TGG + chr4.3:30313807-30313826 MS.gene031671:CDS 40.0%
!! ACTCATTAGTCTTGGCAATG+AGG + chr4.3:30313695-30313714 MS.gene031671:CDS 40.0%
!! TTGGTGTTGTGAGCTATACA+AGG - chr4.3:30313487-30313506 None:intergenic 40.0%
!! TTTGGTGGTACTGGTATGTA+TGG + chr4.3:30313657-30313676 MS.gene031671:CDS 40.0%
AACTGTCTCGTTCTCGAGAA+TGG + chr4.3:30312704-30312723 MS.gene031671:intron 45.0%
AAGACCAGAGTTCAAATGCG+GGG - chr4.3:30312769-30312788 None:intergenic 45.0%
ACCCTTCATCAATCAACGGT+TGG + chr4.3:30313847-30313866 MS.gene031671:CDS 45.0%
CATGTGCAAGGTGAAGAGAA+TGG + chr4.3:30313771-30313790 MS.gene031671:CDS 45.0%
CCTTAGCAGAAGAAACAGCA+AGG + chr4.3:30312950-30312969 MS.gene031671:CDS 45.0%
GACGTGGACATAATCTTCCA+TGG + chr4.3:30311875-30311894 MS.gene031671:CDS 45.0%
GGAAACATGAGTACGGCATA+AGG - chr4.3:30312639-30312658 None:intergenic 45.0%
GTTCTCTGCTTAAGCTTCCA+TGG - chr4.3:30311895-30311914 None:intergenic 45.0%
TGTCCACCATGATCCTTCAA+GGG + chr4.3:30311963-30311982 MS.gene031671:CDS 45.0%
TTAGTCTCGGCAGTTGTTTG+CGG + chr4.3:30312256-30312275 MS.gene031671:intron 45.0%
! GGGCAAACTAGGGATTTTCT+TGG + chr4.3:30313801-30313820 MS.gene031671:CDS 45.0%
! GTGAACAAGTTTGGTGGTAC+TGG + chr4.3:30313648-30313667 MS.gene031671:CDS 45.0%
!! CCTTGCTGTTTCTTCTGCTA+AGG - chr4.3:30312953-30312972 None:intergenic 45.0%
!! TGGTGGACACAAGTTTTCTC+TGG - chr4.3:30311952-30311971 None:intergenic 45.0%
AAGTCACCAAGTGCCCTTGA+AGG - chr4.3:30311979-30311998 None:intergenic 50.0%
CAAGGTGAAGAGAATGGAGG+AGG + chr4.3:30313777-30313796 MS.gene031671:CDS 50.0%
CAAGTGCCCTTGAAGGATCA+TGG - chr4.3:30311972-30311991 None:intergenic 50.0%
GTGAAGAGAATGGAGGAGGA+GGG + chr4.3:30313781-30313800 MS.gene031671:CDS 50.0%
GTGCAAGGTGAAGAGAATGG+AGG + chr4.3:30313774-30313793 MS.gene031671:CDS 50.0%
GTGTCCACCATGATCCTTCA+AGG + chr4.3:30311962-30311981 MS.gene031671:CDS 50.0%
! AGGGCACTTGGTGACTTAAC+TGG + chr4.3:30311982-30312001 MS.gene031671:CDS 50.0%
! GGGCACTTGGTGACTTAACT+GGG + chr4.3:30311983-30312002 MS.gene031671:CDS 50.0%
!! CATGATCCTTCAAGGGCACT+TGG + chr4.3:30311970-30311989 MS.gene031671:CDS 50.0%
ATGGAGGAGGAGGGCAAACT+AGG + chr4.3:30313790-30313809 MS.gene031671:CDS 55.0%
CGTTCCCCGCATTTGAACTC+TGG + chr4.3:30312762-30312781 MS.gene031671:intron 55.0%
GGTGAAGAGAATGGAGGAGG+AGG + chr4.3:30313780-30313799 MS.gene031671:CDS 55.0%
GTGCCCTTGAAGGATCATGG+TGG - chr4.3:30311969-30311988 None:intergenic 55.0%
TGGAGGAGGAGGGCAAACTA+GGG + chr4.3:30313791-30313810 MS.gene031671:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 30311802 30313875 30311802 ID=MS.gene031671
chr4.3 mRNA 30311802 30313875 30311802 ID=MS.gene031671.t1;Parent=MS.gene031671
chr4.3 exon 30311802 30312157 30311802 ID=MS.gene031671.t1.exon1;Parent=MS.gene031671.t1
chr4.3 CDS 30311802 30312157 30311802 ID=cds.MS.gene031671.t1;Parent=MS.gene031671.t1
chr4.3 exon 30312912 30313875 30312912 ID=MS.gene031671.t1.exon2;Parent=MS.gene031671.t1
chr4.3 CDS 30312912 30313875 30312912 ID=cds.MS.gene031671.t1;Parent=MS.gene031671.t1
Gene Sequence

>MS.gene031671

ATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAGCTACATAGACGTGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAACAAAGAAATAAAGAAGAGAGTTTATGTGTGTCCAGAGAAAACTTGTGTCCACCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGTAACTAACTACCTAACCTATCCATCCATCTCTATGTTATTCTGATCACATCGTTGTAATCGGTATATCTGATATAAGGATCTCAGTTGCTCGAGAAATTAGTCTCGGCAGTTGTTTGCGGAAATATCTAAGTTTACCAAAAAAAATTATATATCTGATATAAGGATCAAGTTTAAAAGTGGTTAGGCAACTTGAATAATATGTTTTTTTTTGCCTATTTGGCTTTTTTGAGAATAAAAAGTGAATGAGGTTAATTAGTTTAAACAAATGATTAAGGAGTTGATCAAAGATTAATTAAGACACAAGTTTTTGATAAGCCTTTTTGCTGTTTTTGCCCTAAACGACAAAAGTTCATGGTTTGGAGTTATCTCATTTAACCTCACTCACTATGTATATAATTGAGTATTATTTTTGTTTTATTTTCACACTAGTTTGAGGTTGTTAACCAACTACTATATATAGGCTTGTTTGTACAAATCCTTATGCCGTACTCATGTTTCCGGTTACTCCCATTTTGACTTTTGTCTAGCTCTAATCTTTTGTCATAACTGTCTCGTTCTCGAGAATGGTTCGACTGAGAGATAAGTAAAGTCTGATAAAATATCGTTCCCCGCATTTGAACTCTGGTCTTAACCGAAACTCATTAACCAAATCTTTTGGTTGTTCCTTCTAATATTTATATATAAACATTTCTCTTTGTTAAAAAAGTTAAATTATTAGTACTTAATATTTGTGAATATTTTTGGTTGAGCAGGAGAGACAGCTTCATAACTCACAGAGCCTTTTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAGTGCAGCATCAGAAATAAACAACAGCTCATTATTAAGGGGTAACATTGGTAATTACACCAACATAATGGGAACAACATCTCTAGTCCCTAATAACAATATGCCAACCCATTTTCCTTCAATTTTCAAACCAATTTCAACTCCTGATCATCATCATCATCATCATCATCATGAATCAACCAATCAAACTAGAGGACTATCCCTTTGGATGAATCAAAATTCTCATTCTCAACCTCATGAAACAATGATAACCACCACCAATGGAAATTCTAGTTTGCATGAGATTCATCAACAACTTGACTCATCATCAAGAGAAATTATGTATGGTGGAAATGAGAACCCTCCACCATATTCTAATAACTATCAGCTAAATTGGGTTTTTGGAACTAAACTTTCAAACAATTGCAGCCAAGAATTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATGTTTCTCATGATGCTACAAGCCAACAAATTTCTTCCTTGTATAGCTCACAACACCAAATACCACATCAAACATCTTCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACCTCAAGTGATACTTCATTCCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAGTACTAATGATGTGAACAAGTTTGGTGGTACTGGTATGTATGGTACTTCAAGTTCATTACTCATTAGTCTTGGCAATGAGGAAGATCATAATAATGCATGTGATTTTTCACAAATGCACCCTTCTAAACGTAGACATGTGCAAGGTGAAGAGAATGGAGGAGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCACCCTTCATCAATCAACGGTTGGATTTGA

Protein sequence

>MS.gene031671.t1

MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNSSLLRGNIGNYTNIMGTTSLVPNNNMPTHFPSIFKPISTPDHHHHHHHHESTNQTRGLSLWMNQNSHSQPHETMITTTNGNSSLHEIHQQLDSSSREIMYGGNENPPPYSNNYQLNWVFGTKLSNNCSQELITSTTTSLPLGNINVNVKDVSHDATSQQISSLYSSQHQIPHQTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNSTNDVNKFGGTGMYGTSSSLLISLGNEEDHNNACDFSQMHPSKRRHVQGEENGGGGQTRDFLGVGVQTICHPSSINGWI