Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031671.t1 | XP_024638423.1 | 93.8 | 439 | 26 | 1 | 1 | 439 | 63 | 500 | 1.20E-227 | 798.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031671.t1 | Q9ZWA6 | 52.9 | 473 | 158 | 13 | 1 | 439 | 65 | 506 | 1.2e-108 | 394.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031671.t1 | A0A396IAJ3 | 93.8 | 439 | 26 | 1 | 1 | 439 | 63 | 500 | 8.6e-228 | 798.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene031671.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031671.t1 | MTR_2g090745 | 63.448 | 435 | 97 | 18 | 1 | 425 | 31 | 413 | 1.33e-157 | 452 |
MS.gene031671.t1 | MTR_2g099990 | 88.571 | 140 | 16 | 0 | 1 | 140 | 1 | 140 | 5.41e-94 | 289 |
MS.gene031671.t1 | MTR_2g099990 | 88.571 | 140 | 16 | 0 | 1 | 140 | 70 | 209 | 5.82e-94 | 291 |
MS.gene031671.t1 | MTR_8g017210 | 89.286 | 140 | 15 | 0 | 1 | 140 | 86 | 225 | 1.84e-93 | 291 |
MS.gene031671.t1 | MTR_4g059870 | 41.202 | 466 | 164 | 16 | 1 | 425 | 62 | 458 | 5.88e-93 | 289 |
MS.gene031671.t1 | MTR_1g112270 | 45.855 | 386 | 165 | 8 | 1 | 362 | 79 | 444 | 1.43e-91 | 288 |
MS.gene031671.t1 | MTR_1g112270 | 45.855 | 386 | 165 | 8 | 1 | 362 | 68 | 433 | 1.44e-91 | 288 |
MS.gene031671.t1 | MTR_1g094115 | 86.232 | 138 | 19 | 0 | 1 | 138 | 71 | 208 | 3.07e-90 | 284 |
MS.gene031671.t1 | MTR_1g016010 | 80.667 | 150 | 28 | 1 | 1 | 149 | 65 | 214 | 4.60e-88 | 275 |
MS.gene031671.t1 | MTR_1g094115 | 85.075 | 134 | 20 | 0 | 5 | 138 | 58 | 191 | 7.71e-87 | 275 |
MS.gene031671.t1 | MTR_2g093960 | 68.208 | 173 | 45 | 2 | 1 | 172 | 56 | 219 | 3.04e-85 | 267 |
MS.gene031671.t1 | MTR_2g017720 | 82.178 | 101 | 13 | 1 | 1 | 101 | 337 | 432 | 6.67e-51 | 178 |
MS.gene031671.t1 | MTR_3g102000 | 81.395 | 86 | 13 | 1 | 13 | 98 | 49 | 131 | 2.71e-42 | 149 |
MS.gene031671.t1 | MTR_1g093095 | 33.557 | 149 | 86 | 5 | 1 | 137 | 110 | 257 | 8.62e-17 | 80.9 |
MS.gene031671.t1 | MTR_5g030560 | 83.871 | 31 | 5 | 0 | 1 | 31 | 30 | 60 | 7.83e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031671.t1 | AT1G03840 | 50.833 | 480 | 157 | 13 | 1 | 439 | 63 | 504 | 7.65e-135 | 397 |
MS.gene031671.t1 | AT1G03840 | 50.833 | 480 | 157 | 13 | 1 | 439 | 65 | 506 | 8.15e-135 | 397 |
MS.gene031671.t1 | AT5G44160 | 49.894 | 471 | 139 | 15 | 1 | 439 | 61 | 466 | 5.33e-130 | 384 |
MS.gene031671.t1 | AT5G44160 | 49.894 | 471 | 139 | 15 | 1 | 439 | 22 | 427 | 6.80e-130 | 382 |
MS.gene031671.t1 | AT2G02080 | 42.694 | 438 | 199 | 8 | 1 | 425 | 1 | 399 | 5.79e-95 | 293 |
MS.gene031671.t1 | AT2G02080 | 42.694 | 438 | 199 | 8 | 1 | 425 | 1 | 399 | 5.79e-95 | 293 |
MS.gene031671.t1 | AT2G02080 | 42.694 | 438 | 199 | 8 | 1 | 425 | 78 | 476 | 2.24e-94 | 294 |
MS.gene031671.t1 | AT2G02080 | 42.694 | 438 | 199 | 8 | 1 | 425 | 78 | 476 | 2.24e-94 | 294 |
MS.gene031671.t1 | AT2G02080 | 42.694 | 438 | 199 | 8 | 1 | 425 | 78 | 476 | 2.24e-94 | 294 |
MS.gene031671.t1 | AT2G02080 | 42.694 | 438 | 199 | 8 | 1 | 425 | 78 | 476 | 2.24e-94 | 294 |
MS.gene031671.t1 | AT3G50700 | 87.770 | 139 | 17 | 0 | 1 | 139 | 58 | 196 | 5.02e-94 | 291 |
MS.gene031671.t1 | AT5G66730 | 87.050 | 139 | 18 | 0 | 1 | 139 | 56 | 194 | 9.99e-93 | 289 |
MS.gene031671.t1 | AT5G03150 | 76.163 | 172 | 35 | 3 | 1 | 168 | 77 | 246 | 1.15e-91 | 286 |
MS.gene031671.t1 | AT3G45260 | 77.301 | 163 | 32 | 2 | 1 | 158 | 63 | 225 | 2.49e-90 | 281 |
MS.gene031671.t1 | AT3G45260 | 77.301 | 163 | 32 | 2 | 1 | 158 | 63 | 225 | 2.49e-90 | 281 |
MS.gene031671.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 94 | 233 | 8.34e-90 | 282 |
MS.gene031671.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 94 | 233 | 8.34e-90 | 282 |
MS.gene031671.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 75 | 214 | 8.48e-90 | 281 |
MS.gene031671.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 89 | 228 | 9.42e-90 | 281 |
MS.gene031671.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 81 | 220 | 1.10e-89 | 281 |
MS.gene031671.t1 | AT1G14580 | 84.173 | 139 | 22 | 0 | 1 | 139 | 77 | 215 | 1.11e-89 | 280 |
MS.gene031671.t1 | AT1G14580 | 84.173 | 139 | 22 | 0 | 1 | 139 | 77 | 215 | 1.11e-89 | 280 |
MS.gene031671.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 95 | 234 | 1.46e-89 | 281 |
MS.gene031671.t1 | AT1G14580 | 84.173 | 139 | 22 | 0 | 1 | 139 | 91 | 229 | 1.69e-89 | 280 |
MS.gene031671.t1 | AT2G02070 | 84.892 | 139 | 21 | 0 | 1 | 139 | 76 | 214 | 2.14e-89 | 283 |
MS.gene031671.t1 | AT2G02070 | 84.892 | 139 | 21 | 0 | 1 | 139 | 76 | 214 | 2.14e-89 | 283 |
MS.gene031671.t1 | AT1G55110 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 6.68e-89 | 278 |
MS.gene031671.t1 | AT1G55110 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 6.68e-89 | 278 |
MS.gene031671.t1 | AT1G55110 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 6.68e-89 | 278 |
MS.gene031671.t1 | AT4G02670 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 2.07e-86 | 270 |
MS.gene031671.t1 | AT4G02670 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 2.47e-86 | 270 |
MS.gene031671.t1 | AT5G60470 | 62.245 | 196 | 58 | 3 | 1 | 182 | 59 | 252 | 4.05e-86 | 270 |
MS.gene031671.t1 | AT5G60470 | 62.245 | 196 | 58 | 3 | 1 | 182 | 68 | 261 | 9.21e-86 | 270 |
MS.gene031671.t1 | AT5G60470 | 62.245 | 196 | 58 | 3 | 1 | 182 | 64 | 257 | 9.99e-86 | 270 |
MS.gene031671.t1 | AT1G68130 | 65.152 | 132 | 44 | 2 | 1 | 130 | 65 | 196 | 6.09e-58 | 196 |
MS.gene031671.t1 | AT2G01940 | 64.925 | 134 | 45 | 2 | 1 | 132 | 68 | 201 | 6.86e-58 | 197 |
MS.gene031671.t1 | AT1G25250 | 40.154 | 259 | 133 | 5 | 1 | 246 | 34 | 283 | 4.36e-56 | 189 |
MS.gene031671.t1 | AT1G25250 | 40.154 | 259 | 133 | 5 | 1 | 246 | 57 | 306 | 5.35e-56 | 190 |
MS.gene031671.t1 | AT2G01940 | 63.704 | 135 | 46 | 3 | 1 | 132 | 68 | 202 | 5.13e-54 | 186 |
MS.gene031671.t1 | AT1G68130 | 66.364 | 110 | 35 | 2 | 23 | 130 | 1 | 110 | 8.48e-46 | 162 |
MS.gene031671.t1 | AT2G01940 | 66.071 | 112 | 36 | 2 | 23 | 132 | 1 | 112 | 2.61e-45 | 161 |
MS.gene031671.t1 | AT1G25250 | 38.912 | 239 | 120 | 6 | 23 | 246 | 1 | 228 | 1.60e-43 | 155 |
MS.gene031671.t1 | AT1G34370 | 31.383 | 188 | 102 | 5 | 1 | 161 | 29 | 216 | 6.98e-21 | 92.8 |
MS.gene031671.t1 | AT1G34370 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 9.47e-21 | 95.1 |
MS.gene031671.t1 | AT1G34370 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 9.47e-21 | 95.1 |
MS.gene031671.t1 | AT5G22890 | 33.566 | 143 | 81 | 3 | 1 | 129 | 212 | 354 | 1.60e-20 | 93.2 |
MS.gene031671.t1 | AT1G13290 | 33.557 | 149 | 87 | 5 | 1 | 138 | 96 | 243 | 5.89e-17 | 81.6 |
MS.gene031671.t1 | AT1G34790 | 34.615 | 156 | 85 | 5 | 6 | 145 | 145 | 299 | 1.53e-16 | 80.5 |
MS.gene031671.t1 | AT3G20880 | 32.609 | 138 | 83 | 4 | 1 | 129 | 251 | 387 | 2.64e-16 | 80.9 |
MS.gene031671.t1 | AT3G57670 | 30.303 | 165 | 97 | 5 | 1 | 148 | 212 | 375 | 6.05e-16 | 79.7 |
MS.gene031671.t1 | AT1G08290 | 36.296 | 135 | 75 | 5 | 5 | 129 | 179 | 312 | 9.36e-16 | 78.6 |
MS.gene031671.t1 | AT1G51220 | 31.884 | 138 | 84 | 4 | 1 | 129 | 173 | 309 | 1.46e-15 | 78.2 |
Find 84 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAATAACTATCAGCTAAAT+TGG | 0.096349 | 4.3:+30313328 | MS.gene031671:CDS |
GTTTGAAAATTGAAGGAAAA+TGG | 0.140606 | 4.3:-30313083 | None:intergenic |
TGGGTTGGCATATTGTTATT+AGG | 0.224791 | 4.3:-30313063 | None:intergenic |
TAAACAACAGCTCATTATTA+AGG | 0.225341 | 4.3:+30312992 | MS.gene031671:CDS |
ACTTCATTCCTTGGAAGTTT+AGG | 0.253137 | 4.3:+30313591 | MS.gene031671:CDS |
AGGGCACTTGGTGACTTAAC+TGG | 0.259047 | 4.3:+30311982 | MS.gene031671:CDS |
AGCTGATAGTTATTAGAATA+TGG | 0.265620 | 4.3:-30313321 | None:intergenic |
TGGTAATTACACCAACATAA+TGG | 0.296549 | 4.3:+30313023 | MS.gene031671:CDS |
AAGATGTTTGATGTGGTATT+TGG | 0.298081 | 4.3:-30313503 | None:intergenic |
GGGTTGGCATATTGTTATTA+GGG | 0.301259 | 4.3:-30313062 | None:intergenic |
TAGTACTAGTAATTAATTCT+TGG | 0.306930 | 4.3:-30313383 | None:intergenic |
AAACATTAATGTTAATGTTA+AGG | 0.353425 | 4.3:+30313425 | MS.gene031671:CDS |
TGATGATCAGGAGTTGAAAT+TGG | 0.355744 | 4.3:-30313105 | None:intergenic |
TGCACATGTCTACGTTTAGA+AGG | 0.356777 | 4.3:-30313756 | None:intergenic |
GGTAATTACACCAACATAAT+GGG | 0.361813 | 4.3:+30313024 | MS.gene031671:CDS |
GGATAGTCCTCTAGTTTGAT+TGG | 0.388786 | 4.3:-30313154 | None:intergenic |
TCAAGTGATACTTCATTCCT+TGG | 0.409861 | 4.3:+30313582 | MS.gene031671:CDS |
TATACAAGGAAGAAATTTGT+TGG | 0.410040 | 4.3:-30313470 | None:intergenic |
TAATAACTATCAGCTAAATT+GGG | 0.410339 | 4.3:+30313329 | MS.gene031671:CDS |
GAAATTGGTTTGAAAATTGA+AGG | 0.411531 | 4.3:-30313090 | None:intergenic |
AAACAACAGCTCATTATTAA+GGG | 0.419725 | 4.3:+30312993 | MS.gene031671:CDS |
CCTTGCTGTTTCTTCTGCTA+AGG | 0.425077 | 4.3:-30312950 | None:intergenic |
ATGGAGGAGGAGGGCAAACT+AGG | 0.425755 | 4.3:+30313790 | MS.gene031671:CDS |
TTTGAAAATTGAAGGAAAAT+GGG | 0.430601 | 4.3:-30313082 | None:intergenic |
GTGTCCACCATGATCCTTCA+AGG | 0.447211 | 4.3:+30311962 | MS.gene031671:CDS |
AAACTAGAGGACTATCCCTT+TGG | 0.451953 | 4.3:+30313160 | MS.gene031671:CDS |
GTTCTCTGCTTAAGCTTCCA+TGG | 0.456088 | 4.3:-30311892 | None:intergenic |
ACTAATGATGTGAACAAGTT+TGG | 0.457937 | 4.3:+30313639 | MS.gene031671:CDS |
GTTATGCTGTTCAGTCAGAT+TGG | 0.460465 | 4.3:+30312070 | MS.gene031671:CDS |
GTGAACAAGTTTGGTGGTAC+TGG | 0.464971 | 4.3:+30313648 | MS.gene031671:CDS |
TTCTGCTAAGGCATCACAAA+AGG | 0.465130 | 4.3:-30312938 | None:intergenic |
AAAATTGAAGGAAAATGGGT+TGG | 0.476598 | 4.3:-30313078 | None:intergenic |
ATCCAACCGTTGATTGATGA+AGG | 0.480114 | 4.3:-30313849 | None:intergenic |
AAGTCACCAAGTGCCCTTGA+AGG | 0.485801 | 4.3:-30311976 | None:intergenic |
CAAGGTGAAGAGAATGGAGG+AGG | 0.488030 | 4.3:+30313777 | MS.gene031671:CDS |
GGTGAAGAGAATGGAGGAGG+AGG | 0.498727 | 4.3:+30313780 | MS.gene031671:CDS |
AGTTCATTACTCATTAGTCT+TGG | 0.500073 | 4.3:+30313687 | MS.gene031671:CDS |
TTTGGTGGTACTGGTATGTA+TGG | 0.508130 | 4.3:+30313657 | MS.gene031671:CDS |
CAAACTAGAATTTCCATTGG+TGG | 0.513839 | 4.3:-30313229 | None:intergenic |
CATGATCCTTCAAGGGCACT+TGG | 0.515364 | 4.3:+30311970 | MS.gene031671:CDS |
ACCCTTCATCAATCAACGGT+TGG | 0.521243 | 4.3:+30313847 | MS.gene031671:CDS |
ACTAGAATTTCCATTGGTGG+TGG | 0.523314 | 4.3:-30313226 | None:intergenic |
GGGCACTTGGTGACTTAACT+GGG | 0.533578 | 4.3:+30311983 | MS.gene031671:CDS |
GAAAGCATGGTGAAAAGAAG+TGG | 0.534661 | 4.3:+30312025 | MS.gene031671:CDS |
TCATCAAGAGAAATTATGTA+TGG | 0.535107 | 4.3:+30313279 | MS.gene031671:CDS |
AGATGTTGTTCCCATTATGT+TGG | 0.540728 | 4.3:-30313034 | None:intergenic |
CAAGTGCCCTTGAAGGATCA+TGG | 0.541455 | 4.3:-30311969 | None:intergenic |
TGGAGGAGGAGGGCAAACTA+GGG | 0.541684 | 4.3:+30313791 | MS.gene031671:CDS |
GATTGATGAAGGGTGACAAA+TGG | 0.546230 | 4.3:-30313838 | None:intergenic |
ACAATGATAACCACCACCAA+TGG | 0.547801 | 4.3:+30313216 | MS.gene031671:CDS |
TAGTTATTAGAATATGGTGG+AGG | 0.547810 | 4.3:-30313315 | None:intergenic |
GTGGTTATCATTGTTTCATG+AGG | 0.548154 | 4.3:-30313207 | None:intergenic |
ACTCATTAGTCTTGGCAATG+AGG | 0.548463 | 4.3:+30313695 | MS.gene031671:CDS |
ATGCAAACTAGAATTTCCAT+TGG | 0.550334 | 4.3:-30313232 | None:intergenic |
ATTTCAAACCTAAACTTCCA+AGG | 0.550495 | 4.3:-30313599 | None:intergenic |
TCAAGAGAAATTATGTATGG+TGG | 0.557028 | 4.3:+30313282 | MS.gene031671:CDS |
TTGTGTGAAACATGTGGGAA+AGG | 0.560203 | 4.3:+30311820 | MS.gene031671:CDS |
TTGGTGTTGTGAGCTATACA+AGG | 0.564753 | 4.3:-30313484 | None:intergenic |
GACGTGGACATAATCTTCCA+TGG | 0.576178 | 4.3:+30311875 | MS.gene031671:CDS |
TCATTATTAAGGGGTAACAT+TGG | 0.591412 | 4.3:+30313003 | MS.gene031671:CDS |
GCACATGTCTACGTTTAGAA+GGG | 0.592522 | 4.3:-30313755 | None:intergenic |
TGTCACCCTTCATCAATCAA+CGG | 0.597702 | 4.3:+30313843 | MS.gene031671:CDS |
CATGTGCAAGGTGAAGAGAA+TGG | 0.598271 | 4.3:+30313771 | MS.gene031671:CDS |
AGTTATTAGAATATGGTGGA+GGG | 0.602415 | 4.3:-30313314 | None:intergenic |
GTGAAGAGAATGGAGGAGGA+GGG | 0.608002 | 4.3:+30313781 | MS.gene031671:CDS |
AAGGAATGAAGTATCACTTG+AGG | 0.616790 | 4.3:-30313580 | None:intergenic |
TTAACATTAATGTTTCCTAG+TGG | 0.620526 | 4.3:-30313417 | None:intergenic |
AACAACAGCTCATTATTAAG+GGG | 0.621367 | 4.3:+30312994 | MS.gene031671:CDS |
AATGATGTGAACAAGTTTGG+TGG | 0.623059 | 4.3:+30313642 | MS.gene031671:CDS |
TCCAACCGTTGATTGATGAA+GGG | 0.630023 | 4.3:-30313848 | None:intergenic |
TGTCCACCATGATCCTTCAA+GGG | 0.631692 | 4.3:+30311963 | MS.gene031671:CDS |
GAATCAACCAATCAAACTAG+AGG | 0.641739 | 4.3:+30313147 | MS.gene031671:CDS |
TGATAGTTATTAGAATATGG+TGG | 0.647387 | 4.3:-30313318 | None:intergenic |
CCTTAGCAGAAGAAACAGCA+AGG | 0.647661 | 4.3:+30312950 | MS.gene031671:CDS |
TTTGCTGAAGATGTTTGATG+TGG | 0.648760 | 4.3:-30313510 | None:intergenic |
ACTACAACTTCACTTCCACT+AGG | 0.649669 | 4.3:+30313402 | MS.gene031671:CDS |
GATTCTTGTGTGAAACATGT+GGG | 0.660378 | 4.3:+30311815 | MS.gene031671:CDS |
AGATTCTTGTGTGAAACATG+TGG | 0.668573 | 4.3:+30311814 | MS.gene031671:CDS |
AGAGAATACAAATGTGACTG+TGG | 0.675625 | 4.3:+30312120 | MS.gene031671:CDS |
TCTAAACGTAGACATGTGCA+AGG | 0.685474 | 4.3:+30313759 | MS.gene031671:CDS |
CTTAGCAGAAGAAACAGCAA+GGG | 0.690135 | 4.3:+30312951 | MS.gene031671:CDS |
AATCTACAGCTACATAGACG+TGG | 0.700320 | 4.3:+30311859 | MS.gene031671:CDS |
GTGCAAGGTGAAGAGAATGG+AGG | 0.708411 | 4.3:+30313774 | MS.gene031671:CDS |
GTGCCCTTGAAGGATCATGG+TGG | 0.739339 | 4.3:-30311966 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTATATATCTGATATA+AGG | + | chr4.3:30312300-30312319 | MS.gene031671:intron | 10.0% |
!! | GTTTATATATAAATATTAGA+AGG | - | chr4.3:30312826-30312845 | None:intergenic | 10.0% |
!!! | ATCAGATATATAATTTTTTT+TGG | - | chr4.3:30312297-30312316 | None:intergenic | 10.0% |
!!! | TTAATATTTGTGAATATTTT+TGG | + | chr4.3:30312881-30312900 | MS.gene031671:intron | 10.0% |
!! | AAACATTAATGTTAATGTTA+AGG | + | chr4.3:30313425-30313444 | MS.gene031671:CDS | 15.0% |
!! | TTAGTTTAAACAAATGATTA+AGG | + | chr4.3:30312412-30312431 | MS.gene031671:intron | 15.0% |
!! | TAATAACTATCAGCTAAATT+GGG | + | chr4.3:30313329-30313348 | MS.gene031671:CDS | 20.0% |
!! | TAGTACTAGTAATTAATTCT+TGG | - | chr4.3:30313386-30313405 | None:intergenic | 20.0% |
!! | TTTGAAAATTGAAGGAAAAT+GGG | - | chr4.3:30313085-30313104 | None:intergenic | 20.0% |
!!! | TATGTTTTTTTTTGCCTATT+TGG | + | chr4.3:30312357-30312376 | MS.gene031671:intron | 20.0% |
! | AAACAACAGCTCATTATTAA+GGG | + | chr4.3:30312993-30313012 | MS.gene031671:CDS | 25.0% |
! | AATTATATACATAGTGAGTG+AGG | - | chr4.3:30312538-30312557 | None:intergenic | 25.0% |
! | AGCTGATAGTTATTAGAATA+TGG | - | chr4.3:30313324-30313343 | None:intergenic | 25.0% |
! | ATAAGGATCAAGTTTAAAAG+TGG | + | chr4.3:30312317-30312336 | MS.gene031671:intron | 25.0% |
! | CTAATAACTATCAGCTAAAT+TGG | + | chr4.3:30313328-30313347 | MS.gene031671:CDS | 25.0% |
! | GTTAACCAACTACTATATAT+AGG | + | chr4.3:30312598-30312617 | MS.gene031671:intron | 25.0% |
! | GTTTGAAAATTGAAGGAAAA+TGG | - | chr4.3:30313086-30313105 | None:intergenic | 25.0% |
! | TAAACAACAGCTCATTATTA+AGG | + | chr4.3:30312992-30313011 | MS.gene031671:CDS | 25.0% |
! | TAATCGGTATATCTGATATA+AGG | + | chr4.3:30312214-30312233 | MS.gene031671:intron | 25.0% |
! | TATACAAGGAAGAAATTTGT+TGG | - | chr4.3:30313473-30313492 | None:intergenic | 25.0% |
! | TATTCTCAAAAAAGCCAAAT+AGG | - | chr4.3:30312374-30312393 | None:intergenic | 25.0% |
! | TCATCAAGAGAAATTATGTA+TGG | + | chr4.3:30313279-30313298 | MS.gene031671:CDS | 25.0% |
! | TGATAGTTATTAGAATATGG+TGG | - | chr4.3:30313321-30313340 | None:intergenic | 25.0% |
! | TTAACATTAATGTTTCCTAG+TGG | - | chr4.3:30313420-30313439 | None:intergenic | 25.0% |
! | TTGAGAATAAAAAGTGAATG+AGG | + | chr4.3:30312385-30312404 | MS.gene031671:intron | 25.0% |
!! | AACTCATTAACCAAATCTTT+TGG | + | chr4.3:30312795-30312814 | MS.gene031671:intron | 25.0% |
!! | AAGATTTGGTTAATGAGTTT+CGG | - | chr4.3:30312794-30312813 | None:intergenic | 25.0% |
!!! | AGAATTTTGATTCATCCAAA+GGG | - | chr4.3:30313178-30313197 | None:intergenic | 25.0% |
!!! | GAAATTGGTTTGAAAATTGA+AGG | - | chr4.3:30313093-30313112 | None:intergenic | 25.0% |
!!! | TTTATTTTCACACTAGTTTG+AGG | + | chr4.3:30312573-30312592 | MS.gene031671:intron | 25.0% |
AAAATTGAAGGAAAATGGGT+TGG | - | chr4.3:30313081-30313100 | None:intergenic | 30.0% | |
AACAACAGCTCATTATTAAG+GGG | + | chr4.3:30312994-30313013 | MS.gene031671:CDS | 30.0% | |
AAGATGTTTGATGTGGTATT+TGG | - | chr4.3:30313506-30313525 | None:intergenic | 30.0% | |
ACAAGCCTATATATAGTAGT+TGG | - | chr4.3:30312606-30312625 | None:intergenic | 30.0% | |
ACTAATGATGTGAACAAGTT+TGG | + | chr4.3:30313639-30313658 | MS.gene031671:CDS | 30.0% | |
AGCTAGACAAAAGTCAAAAT+GGG | - | chr4.3:30312669-30312688 | None:intergenic | 30.0% | |
ATGCAAACTAGAATTTCCAT+TGG | - | chr4.3:30313235-30313254 | None:intergenic | 30.0% | |
ATTTCAAACCTAAACTTCCA+AGG | - | chr4.3:30313602-30313621 | None:intergenic | 30.0% | |
GATCAAGTTTAAAAGTGGTT+AGG | + | chr4.3:30312322-30312341 | MS.gene031671:intron | 30.0% | |
GGTAATTACACCAACATAAT+GGG | + | chr4.3:30313024-30313043 | MS.gene031671:CDS | 30.0% | |
TAGTTATTAGAATATGGTGG+AGG | - | chr4.3:30313318-30313337 | None:intergenic | 30.0% | |
TCAAGAGAAATTATGTATGG+TGG | + | chr4.3:30313282-30313301 | MS.gene031671:CDS | 30.0% | |
TCATTATTAAGGGGTAACAT+TGG | + | chr4.3:30313003-30313022 | MS.gene031671:CDS | 30.0% | |
TGATCAGAATAACATAGAGA+TGG | - | chr4.3:30312186-30312205 | None:intergenic | 30.0% | |
TGGTAATTACACCAACATAA+TGG | + | chr4.3:30313023-30313042 | MS.gene031671:CDS | 30.0% | |
TTACAAAAAGCTGCTCAAAT+TGG | + | chr4.3:30313552-30313571 | MS.gene031671:CDS | 30.0% | |
! | AGTTATTAGAATATGGTGGA+GGG | - | chr4.3:30313317-30313336 | None:intergenic | 30.0% |
! | AGTTCATTACTCATTAGTCT+TGG | + | chr4.3:30313687-30313706 | MS.gene031671:CDS | 30.0% |
! | TATCAGCTAAATTGGGTTTT+TGG | + | chr4.3:30313336-30313355 | MS.gene031671:CDS | 30.0% |
!!! | GAGAATTTTGATTCATCCAA+AGG | - | chr4.3:30313179-30313198 | None:intergenic | 30.0% |
AAAGCTCACTCAAAAACATG+TGG | + | chr4.3:30312093-30312112 | MS.gene031671:CDS | 35.0% | |
AAAGTCAAAATGGGAGTAAC+CGG | - | chr4.3:30312660-30312679 | None:intergenic | 35.0% | |
AACGACAAAAGTTCATGGTT+TGG | + | chr4.3:30312497-30312516 | MS.gene031671:intron | 35.0% | |
AATGATGTGAACAAGTTTGG+TGG | + | chr4.3:30313642-30313661 | MS.gene031671:CDS | 35.0% | |
ACTTCATTCCTTGGAAGTTT+AGG | + | chr4.3:30313591-30313610 | MS.gene031671:CDS | 35.0% | |
AGAGAATACAAATGTGACTG+TGG | + | chr4.3:30312120-30312139 | MS.gene031671:CDS | 35.0% | |
AGATGTTGTTCCCATTATGT+TGG | - | chr4.3:30313037-30313056 | None:intergenic | 35.0% | |
AGATTCTTGTGTGAAACATG+TGG | + | chr4.3:30311814-30311833 | MS.gene031671:CDS | 35.0% | |
CAAACTAGAATTTCCATTGG+TGG | - | chr4.3:30313232-30313251 | None:intergenic | 35.0% | |
CAGAATAACATAGAGATGGA+TGG | - | chr4.3:30312182-30312201 | None:intergenic | 35.0% | |
GAAGGAACAACCAAAAGATT+TGG | - | chr4.3:30312808-30312827 | None:intergenic | 35.0% | |
GAATCAACCAATCAAACTAG+AGG | + | chr4.3:30313147-30313166 | MS.gene031671:CDS | 35.0% | |
GAGCTAGACAAAAGTCAAAA+TGG | - | chr4.3:30312670-30312689 | None:intergenic | 35.0% | |
GATTCTTGTGTGAAACATGT+GGG | + | chr4.3:30311815-30311834 | MS.gene031671:CDS | 35.0% | |
GTGGTTATCATTGTTTCATG+AGG | - | chr4.3:30313210-30313229 | None:intergenic | 35.0% | |
TAACATAGAGATGGATGGAT+AGG | - | chr4.3:30312177-30312196 | None:intergenic | 35.0% | |
TCAAGTGATACTTCATTCCT+TGG | + | chr4.3:30313582-30313601 | MS.gene031671:CDS | 35.0% | |
TCTGATCACATCGTTGTAAT+CGG | + | chr4.3:30312198-30312217 | MS.gene031671:intron | 35.0% | |
TGATGATCAGGAGTTGAAAT+TGG | - | chr4.3:30313108-30313127 | None:intergenic | 35.0% | |
TTAAGACCAGAGTTCAAATG+CGG | - | chr4.3:30312771-30312790 | None:intergenic | 35.0% | |
TTAGGGCAAAAACAGCAAAA+AGG | - | chr4.3:30312478-30312497 | None:intergenic | 35.0% | |
TTTGCTGAAGATGTTTGATG+TGG | - | chr4.3:30313513-30313532 | None:intergenic | 35.0% | |
! | AAGCACTTTTGTAGAAAGCA+TGG | + | chr4.3:30312012-30312031 | MS.gene031671:CDS | 35.0% |
! | AAGGAATGAAGTATCACTTG+AGG | - | chr4.3:30313583-30313602 | None:intergenic | 35.0% |
! | ACTGTGGAACTATCTTTTCA+AGG | + | chr4.3:30312136-30312155 | MS.gene031671:CDS | 35.0% |
! | GGGTTGGCATATTGTTATTA+GGG | - | chr4.3:30313065-30313084 | None:intergenic | 35.0% |
! | TGATGATGATGATGATGATC+AGG | - | chr4.3:30313120-30313139 | None:intergenic | 35.0% |
!! | ACCATGAACTTTTGTCGTTT+AGG | - | chr4.3:30312496-30312515 | None:intergenic | 35.0% |
!! | CCATGAACTTTTGTCGTTTA+GGG | - | chr4.3:30312495-30312514 | None:intergenic | 35.0% |
!! | TGGGTTGGCATATTGTTATT+AGG | - | chr4.3:30313066-30313085 | None:intergenic | 35.0% |
!!! | GTGAATATTTTTGGTTGAGC+AGG | + | chr4.3:30312890-30312909 | MS.gene031671:intron | 35.0% |
AAACTAGAGGACTATCCCTT+TGG | + | chr4.3:30313160-30313179 | MS.gene031671:CDS | 40.0% | |
AATCTACAGCTACATAGACG+TGG | + | chr4.3:30311859-30311878 | MS.gene031671:CDS | 40.0% | |
ACAATGATAACCACCACCAA+TGG | + | chr4.3:30313216-30313235 | MS.gene031671:CDS | 40.0% | |
ACTACAACTTCACTTCCACT+AGG | + | chr4.3:30313402-30313421 | MS.gene031671:CDS | 40.0% | |
ACTAGAATTTCCATTGGTGG+TGG | - | chr4.3:30313229-30313248 | None:intergenic | 40.0% | |
AGTAACCGGAAACATGAGTA+CGG | - | chr4.3:30312646-30312665 | None:intergenic | 40.0% | |
CCCTAAACGACAAAAGTTCA+TGG | + | chr4.3:30312492-30312511 | MS.gene031671:intron | 40.0% | |
CTTAGCAGAAGAAACAGCAA+GGG | + | chr4.3:30312951-30312970 | MS.gene031671:CDS | 40.0% | |
GATTGATGAAGGGTGACAAA+TGG | - | chr4.3:30313841-30313860 | None:intergenic | 40.0% | |
GCACATGTCTACGTTTAGAA+GGG | - | chr4.3:30313758-30313777 | None:intergenic | 40.0% | |
GTTATGCTGTTCAGTCAGAT+TGG | + | chr4.3:30312070-30312089 | MS.gene031671:CDS | 40.0% | |
TAAGACCAGAGTTCAAATGC+GGG | - | chr4.3:30312770-30312789 | None:intergenic | 40.0% | |
TAGAGATGGATGGATAGGTT+AGG | - | chr4.3:30312172-30312191 | None:intergenic | 40.0% | |
TCTAAACGTAGACATGTGCA+AGG | + | chr4.3:30313759-30313778 | MS.gene031671:CDS | 40.0% | |
TGCACATGTCTACGTTTAGA+AGG | - | chr4.3:30313759-30313778 | None:intergenic | 40.0% | |
TGTCACCCTTCATCAATCAA+CGG | + | chr4.3:30313843-30313862 | MS.gene031671:CDS | 40.0% | |
TTATGCCGTACTCATGTTTC+CGG | + | chr4.3:30312638-30312657 | MS.gene031671:intron | 40.0% | |
TTGTGTGAAACATGTGGGAA+AGG | + | chr4.3:30311820-30311839 | MS.gene031671:CDS | 40.0% | |
! | ATCCAACCGTTGATTGATGA+AGG | - | chr4.3:30313852-30313871 | None:intergenic | 40.0% |
! | GAAAGCATGGTGAAAAGAAG+TGG | + | chr4.3:30312025-30312044 | MS.gene031671:CDS | 40.0% |
! | GGATAGTCCTCTAGTTTGAT+TGG | - | chr4.3:30313157-30313176 | None:intergenic | 40.0% |
! | GTTGCTCGAGAAATTAGTCT+CGG | + | chr4.3:30312243-30312262 | MS.gene031671:intron | 40.0% |
! | TCCAACCGTTGATTGATGAA+GGG | - | chr4.3:30313851-30313870 | None:intergenic | 40.0% |
! | TTCTGCTAAGGCATCACAAA+AGG | - | chr4.3:30312941-30312960 | None:intergenic | 40.0% |
!! | ACTAGGGATTTTCTTGGTGT+TGG | + | chr4.3:30313807-30313826 | MS.gene031671:CDS | 40.0% |
!! | ACTCATTAGTCTTGGCAATG+AGG | + | chr4.3:30313695-30313714 | MS.gene031671:CDS | 40.0% |
!! | TTGGTGTTGTGAGCTATACA+AGG | - | chr4.3:30313487-30313506 | None:intergenic | 40.0% |
!! | TTTGGTGGTACTGGTATGTA+TGG | + | chr4.3:30313657-30313676 | MS.gene031671:CDS | 40.0% |
AACTGTCTCGTTCTCGAGAA+TGG | + | chr4.3:30312704-30312723 | MS.gene031671:intron | 45.0% | |
AAGACCAGAGTTCAAATGCG+GGG | - | chr4.3:30312769-30312788 | None:intergenic | 45.0% | |
ACCCTTCATCAATCAACGGT+TGG | + | chr4.3:30313847-30313866 | MS.gene031671:CDS | 45.0% | |
CATGTGCAAGGTGAAGAGAA+TGG | + | chr4.3:30313771-30313790 | MS.gene031671:CDS | 45.0% | |
CCTTAGCAGAAGAAACAGCA+AGG | + | chr4.3:30312950-30312969 | MS.gene031671:CDS | 45.0% | |
GACGTGGACATAATCTTCCA+TGG | + | chr4.3:30311875-30311894 | MS.gene031671:CDS | 45.0% | |
GGAAACATGAGTACGGCATA+AGG | - | chr4.3:30312639-30312658 | None:intergenic | 45.0% | |
GTTCTCTGCTTAAGCTTCCA+TGG | - | chr4.3:30311895-30311914 | None:intergenic | 45.0% | |
TGTCCACCATGATCCTTCAA+GGG | + | chr4.3:30311963-30311982 | MS.gene031671:CDS | 45.0% | |
TTAGTCTCGGCAGTTGTTTG+CGG | + | chr4.3:30312256-30312275 | MS.gene031671:intron | 45.0% | |
! | GGGCAAACTAGGGATTTTCT+TGG | + | chr4.3:30313801-30313820 | MS.gene031671:CDS | 45.0% |
! | GTGAACAAGTTTGGTGGTAC+TGG | + | chr4.3:30313648-30313667 | MS.gene031671:CDS | 45.0% |
!! | CCTTGCTGTTTCTTCTGCTA+AGG | - | chr4.3:30312953-30312972 | None:intergenic | 45.0% |
!! | TGGTGGACACAAGTTTTCTC+TGG | - | chr4.3:30311952-30311971 | None:intergenic | 45.0% |
AAGTCACCAAGTGCCCTTGA+AGG | - | chr4.3:30311979-30311998 | None:intergenic | 50.0% | |
CAAGGTGAAGAGAATGGAGG+AGG | + | chr4.3:30313777-30313796 | MS.gene031671:CDS | 50.0% | |
CAAGTGCCCTTGAAGGATCA+TGG | - | chr4.3:30311972-30311991 | None:intergenic | 50.0% | |
GTGAAGAGAATGGAGGAGGA+GGG | + | chr4.3:30313781-30313800 | MS.gene031671:CDS | 50.0% | |
GTGCAAGGTGAAGAGAATGG+AGG | + | chr4.3:30313774-30313793 | MS.gene031671:CDS | 50.0% | |
GTGTCCACCATGATCCTTCA+AGG | + | chr4.3:30311962-30311981 | MS.gene031671:CDS | 50.0% | |
! | AGGGCACTTGGTGACTTAAC+TGG | + | chr4.3:30311982-30312001 | MS.gene031671:CDS | 50.0% |
! | GGGCACTTGGTGACTTAACT+GGG | + | chr4.3:30311983-30312002 | MS.gene031671:CDS | 50.0% |
!! | CATGATCCTTCAAGGGCACT+TGG | + | chr4.3:30311970-30311989 | MS.gene031671:CDS | 50.0% |
ATGGAGGAGGAGGGCAAACT+AGG | + | chr4.3:30313790-30313809 | MS.gene031671:CDS | 55.0% | |
CGTTCCCCGCATTTGAACTC+TGG | + | chr4.3:30312762-30312781 | MS.gene031671:intron | 55.0% | |
GGTGAAGAGAATGGAGGAGG+AGG | + | chr4.3:30313780-30313799 | MS.gene031671:CDS | 55.0% | |
GTGCCCTTGAAGGATCATGG+TGG | - | chr4.3:30311969-30311988 | None:intergenic | 55.0% | |
TGGAGGAGGAGGGCAAACTA+GGG | + | chr4.3:30313791-30313810 | MS.gene031671:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 30311802 | 30313875 | 30311802 | ID=MS.gene031671 |
chr4.3 | mRNA | 30311802 | 30313875 | 30311802 | ID=MS.gene031671.t1;Parent=MS.gene031671 |
chr4.3 | exon | 30311802 | 30312157 | 30311802 | ID=MS.gene031671.t1.exon1;Parent=MS.gene031671.t1 |
chr4.3 | CDS | 30311802 | 30312157 | 30311802 | ID=cds.MS.gene031671.t1;Parent=MS.gene031671.t1 |
chr4.3 | exon | 30312912 | 30313875 | 30312912 | ID=MS.gene031671.t1.exon2;Parent=MS.gene031671.t1 |
chr4.3 | CDS | 30312912 | 30313875 | 30312912 | ID=cds.MS.gene031671.t1;Parent=MS.gene031671.t1 |
Gene Sequence |
Protein sequence |