AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055771

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055771.t1 MTR_2g090745 90.991 444 25 1 1 444 1 429 0.0 811
MS.gene055771.t1 MTR_4g059870 49.123 342 129 6 15 351 46 347 1.78e-105 322
MS.gene055771.t1 MTR_2g099990 88.235 153 18 0 17 169 56 208 2.11e-102 313
MS.gene055771.t1 MTR_8g017210 87.582 153 19 0 17 169 72 224 9.57e-101 310
MS.gene055771.t1 MTR_1g112270 49.582 359 158 7 15 351 52 409 1.03e-99 309
MS.gene055771.t1 MTR_1g112270 49.719 356 156 7 18 351 66 420 2.31e-98 306
MS.gene055771.t1 MTR_1g094115 83.766 154 25 0 15 168 55 208 4.12e-98 304
MS.gene055771.t1 MTR_2g099990 89.209 139 15 0 31 169 1 139 2.69e-93 287
MS.gene055771.t1 MTR_1g016010 80.255 157 30 1 17 172 51 207 1.17e-92 287
MS.gene055771.t1 MTR_2g093960 68.984 187 48 3 15 200 40 217 1.85e-92 286
MS.gene055771.t1 MTR_1g094115 82.836 134 23 0 35 168 58 191 2.62e-84 268
MS.gene055771.t1 MTR_2g017720 88.793 116 8 1 16 131 322 432 5.87e-67 220
MS.gene055771.t1 MTR_3g102000 78.788 99 14 2 34 128 36 131 8.88e-48 164
MS.gene055771.t1 MTR_5g030560 91.111 45 4 0 17 61 16 60 1.53e-23 94.4
MS.gene055771.t1 MTR_1g093095 33.553 152 88 5 28 167 107 257 1.97e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055771.t1 AT1G03840 50.985 457 164 13 17 428 49 490 3.81e-129 383
MS.gene055771.t1 AT1G03840 50.766 457 165 13 17 428 51 492 1.68e-128 381
MS.gene055771.t1 AT5G44160 50.664 452 137 14 17 428 8 413 4.71e-125 370
MS.gene055771.t1 AT5G44160 50.664 452 137 14 17 428 47 452 6.93e-125 370
MS.gene055771.t1 AT2G02080 48.626 364 139 11 17 357 64 402 2.89e-101 311
MS.gene055771.t1 AT2G02080 48.626 364 139 11 17 357 64 402 2.89e-101 311
MS.gene055771.t1 AT2G02080 48.626 364 139 11 17 357 64 402 2.89e-101 311
MS.gene055771.t1 AT2G02080 48.626 364 139 11 17 357 64 402 2.89e-101 311
MS.gene055771.t1 AT5G66730 86.275 153 21 0 17 169 42 194 9.09e-101 310
MS.gene055771.t1 AT4G02670 80.247 162 31 1 17 177 63 224 6.34e-99 302
MS.gene055771.t1 AT4G02670 80.247 162 31 1 17 177 65 226 6.82e-99 302
MS.gene055771.t1 AT1G55110 85.065 154 22 1 17 169 73 226 4.91e-98 301
MS.gene055771.t1 AT1G55110 85.065 154 22 1 17 169 73 226 4.91e-98 301
MS.gene055771.t1 AT1G55110 85.065 154 22 1 17 169 73 226 4.91e-98 301
MS.gene055771.t1 AT3G13810 87.013 154 19 1 17 169 61 214 4.06e-97 300
MS.gene055771.t1 AT3G13810 87.013 154 19 1 17 169 75 228 4.87e-97 300
MS.gene055771.t1 AT3G13810 87.013 154 19 1 17 169 80 233 4.93e-97 301
MS.gene055771.t1 AT3G13810 87.013 154 19 1 17 169 80 233 4.93e-97 301
MS.gene055771.t1 AT3G13810 87.582 153 18 1 18 169 68 220 1.37e-96 299
MS.gene055771.t1 AT3G13810 87.582 153 18 1 18 169 82 234 1.80e-96 299
MS.gene055771.t1 AT3G45260 44.208 423 166 14 17 428 49 412 1.80e-96 297
MS.gene055771.t1 AT3G45260 44.208 423 166 14 17 428 49 412 1.80e-96 297
MS.gene055771.t1 AT1G14580 80.392 153 30 0 17 169 63 215 1.56e-95 295
MS.gene055771.t1 AT1G14580 80.392 153 30 0 17 169 63 215 1.56e-95 295
MS.gene055771.t1 AT2G02070 80.645 155 30 0 15 169 60 214 2.04e-95 299
MS.gene055771.t1 AT2G02070 80.645 155 30 0 15 169 60 214 2.04e-95 299
MS.gene055771.t1 AT1G14580 80.392 153 30 0 17 169 77 229 3.18e-95 295
MS.gene055771.t1 AT2G02080 47.143 350 137 11 31 357 1 325 4.78e-92 285
MS.gene055771.t1 AT2G02080 47.143 350 137 11 31 357 1 325 4.78e-92 285
MS.gene055771.t1 AT5G60470 75.974 154 36 1 18 170 46 199 6.07e-89 278
MS.gene055771.t1 AT5G60470 75.484 155 37 1 17 170 50 204 7.39e-89 278
MS.gene055771.t1 AT5G60470 75.484 155 37 1 17 170 54 208 7.60e-89 278
MS.gene055771.t1 AT1G68130 66.216 148 48 2 15 160 49 196 8.73e-68 222
MS.gene055771.t1 AT1G25250 64.865 148 49 2 16 160 19 166 1.29e-66 217
MS.gene055771.t1 AT1G25250 64.430 149 50 2 15 160 41 189 2.12e-66 218
MS.gene055771.t1 AT2G01940 63.333 150 53 2 15 162 52 201 8.00e-66 218
MS.gene055771.t1 AT2G01940 62.252 151 54 3 15 162 52 202 6.20e-62 207
MS.gene055771.t1 AT1G68130 64.545 110 37 2 53 160 1 110 8.43e-45 159
MS.gene055771.t1 AT1G25250 63.063 111 38 2 53 160 1 111 1.37e-43 155
MS.gene055771.t1 AT2G01940 62.500 112 40 2 53 162 1 112 1.72e-43 156
MS.gene055771.t1 AT1G34370 33.540 161 93 3 13 159 11 171 1.62e-21 94.7
MS.gene055771.t1 AT1G34370 33.540 161 93 3 13 159 221 381 2.12e-21 97.1
MS.gene055771.t1 AT1G34370 33.540 161 93 3 13 159 221 381 2.12e-21 97.1
MS.gene055771.t1 AT5G22890 34.000 150 85 4 21 156 202 351 2.87e-21 95.5
MS.gene055771.t1 AT1G34790 34.615 156 92 5 13 159 122 276 1.17e-19 89.7
MS.gene055771.t1 AT1G13290 34.857 175 91 10 22 184 88 251 9.15e-19 87.0
MS.gene055771.t1 AT3G20880 34.247 146 86 5 23 159 243 387 3.30e-18 86.7
MS.gene055771.t1 AT1G51220 32.877 146 88 5 23 159 165 309 7.93e-18 84.7
MS.gene055771.t1 AT3G57670 33.333 147 86 6 23 159 204 348 3.89e-17 83.2
MS.gene055771.t1 AT1G08290 37.500 136 72 6 35 159 179 312 1.73e-16 80.9

Find 73 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGATCAGGTTTATCTCTT+TGG 0.192108 2.1:+10186864 MS.gene055771:CDS
GAAGAAACAGCTAGAATAAA+TGG 0.212216 2.1:+10186683 MS.gene055771:CDS
TGTATAGTGCAAATGAAAAT+TGG 0.226846 2.1:+10186978 MS.gene055771:CDS
CTGCATGCGCCGTCGTTTCA+TGG 0.236146 2.1:-10187404 None:intergenic
CAATCATCCTTCAAGGGCTT+TGG 0.260521 2.1:+10185706 MS.gene055771:CDS
AATATAAACAACTCATTATT+AGG 0.262088 2.1:+10186713 MS.gene055771:CDS
AGGGCTTTGGGAGACTTAAC+TGG 0.275104 2.1:+10185719 MS.gene055771:CDS
CTCTTGACATCCATTATTAG+AGG 0.287901 2.1:-10187020 None:intergenic
AATAAATTCTCCTCTAATAA+TGG 0.294626 2.1:+10187010 MS.gene055771:CDS
AAAGAACGAGCAAAGAAATA+AGG 0.311980 2.1:+10185645 MS.gene055771:CDS
GATCTAGATGTTTGATTAGT+TGG 0.313962 2.1:-10186848 None:intergenic
TAACATCGATAATAATAATA+AGG 0.320786 2.1:+10187078 MS.gene055771:CDS
TGCAGAATGAAGAGAGTGTT+TGG 0.336211 2.1:+10187422 MS.gene055771:CDS
TCGATGTTATTATTAACTAA+TGG 0.340481 2.1:-10187064 None:intergenic
TCAGCAGAGAGCTACATTTC+AGG 0.365625 2.1:+10187361 MS.gene055771:CDS
GCAAATGAAAATTGGGTGTT+TGG 0.367718 2.1:+10186986 MS.gene055771:CDS
TGCATGCGCCGTCGTTTCAT+GGG 0.371157 2.1:-10187403 None:intergenic
GTGTGTGAAATTTGTCTAAA+GGG 0.373283 2.1:+10185557 MS.gene055771:CDS
TCATTATTCCTTGGAAGCTT+AGG 0.378657 2.1:+10187247 MS.gene055771:CDS
TCTTGATTTGTGCATGAGAT+TGG 0.386882 2.1:-10186824 None:intergenic
AATCATCCTTCAAGGGCTTT+GGG 0.387364 2.1:+10185707 MS.gene055771:CDS
GTACTTGCAACAAGTGATCT+TGG 0.393658 2.1:+10187337 MS.gene055771:CDS
GCAGAATGAAGAGAGTGTTT+GGG 0.414547 2.1:+10187423 MS.gene055771:CDS
GACAAATTTCACACACGAAT+CGG 0.419935 2.1:-10185550 None:intergenic
CGTGTGTGAAATTTGTCTAA+AGG 0.423777 2.1:+10185556 MS.gene055771:CDS
TCTAGCTGTTTCTTCTGCTA+AGG 0.433712 2.1:-10186675 None:intergenic
TTTGATGATGAGATTCTGAT+TGG 0.434622 2.1:-10187153 None:intergenic
GTGTTCACAATCATCCTTCA+AGG 0.445387 2.1:+10185699 MS.gene055771:CDS
TTTATGCTGTTCAATCGGAT+TGG 0.446458 2.1:+10185807 MS.gene055771:CDS
TCAACTGAATCATTATTCCT+TGG 0.446740 2.1:+10187238 MS.gene055771:CDS
AAGGATATTACTTCTGCTTC+AGG 0.448977 2.1:-10185500 None:intergenic
AACAACTCATTATTAGGAAT+GGG 0.451735 2.1:+10186719 MS.gene055771:CDS
AAGTCTCCCAAAGCCCTTGA+AGG 0.467713 2.1:-10185713 None:intergenic
GACGTGGACATAACCTTCCT+TGG 0.468137 2.1:+10185612 MS.gene055771:CDS
TTGTGAACACATGTCTTCTC+TGG 0.471074 2.1:-10185686 None:intergenic
AAACAACTCATTATTAGGAA+TGG 0.474295 2.1:+10186718 MS.gene055771:CDS
ATGCATGAGATTCATCAACT+TGG 0.490859 2.1:+10186932 MS.gene055771:CDS
TACTTGCAACAAGTGATCTT+GGG 0.493836 2.1:+10187338 MS.gene055771:CDS
GTATAGTGCAAATGAAAATT+GGG 0.498164 2.1:+10186979 MS.gene055771:CDS
AATAGTCCAAGTCAAGATCA+TGG 0.501314 2.1:+10187280 MS.gene055771:CDS
GGAAGCACGGTGAGAAGAAG+TGG 0.504824 2.1:+10185762 MS.gene055771:CDS
GTTCTTTGCTTCAGCTTCCA+AGG 0.509963 2.1:-10185629 None:intergenic
GAGTGTTTGGGGACAAACTA+GGG 0.510953 2.1:+10187435 MS.gene055771:CDS
TTATTCCCATGATCTTGACT+TGG 0.518278 2.1:-10187286 None:intergenic
GGGATAGCTTTGTCACTCAC+AGG 0.519723 2.1:+10186639 MS.gene055771:CDS
TTTGCTTCAGCTTCCAAGGA+AGG 0.519934 2.1:-10185625 None:intergenic
ACTAATCAAACATCTAGATC+AGG 0.520793 2.1:+10186851 MS.gene055771:CDS
AATTCTCTTGTCCCAAACAT+AGG 0.523465 2.1:+10186776 MS.gene055771:CDS
CTTGGGTCCGCTACAAGCAC+AGG 0.540913 2.1:+10186950 MS.gene055771:CDS
GATTGATGAACTGTGGCAAA+TGG 0.542982 2.1:-10187483 None:intergenic
ATCTCAAACCTAAGCTTCCA+AGG 0.557018 2.1:-10187255 None:intergenic
AGAGTGTTTGGGGACAAACT+AGG 0.561914 2.1:+10187434 MS.gene055771:CDS
GCATGCGCCGTCGTTTCATG+GGG 0.563017 2.1:-10187402 None:intergenic
TGCATGAGATTCATCAACTT+GGG 0.577843 2.1:+10186933 MS.gene055771:CDS
ATAGTCCAAGTCAAGATCAT+GGG 0.586895 2.1:+10187281 MS.gene055771:CDS
GGAATGGGAGTTAACAACAT+TGG 0.588635 2.1:+10186734 MS.gene055771:CDS
TGCCACAGTTCATCAATCAA+CGG 0.590617 2.1:+10187488 MS.gene055771:CDS
TGTTCACAATCATCCTTCAA+GGG 0.591498 2.1:+10185700 MS.gene055771:CDS
GGGCTTTGGGAGACTTAACT+GGG 0.593735 2.1:+10185720 MS.gene055771:CDS
CTCTGCAAACATGTCAGCAA+CGG 0.600632 2.1:+10187180 MS.gene055771:CDS
CGTTGCTGACATGTTTGCAG+AGG 0.609799 2.1:-10187179 None:intergenic
ATGCGCCGTCGTTTCATGGG+GGG 0.615094 2.1:-10187400 None:intergenic
CATTGCTCCTGTGCTTGTAG+CGG 0.619229 2.1:-10186957 None:intergenic
ACAGTTCATCAATCAACGGA+TGG 0.619902 2.1:+10187492 MS.gene055771:CDS
CAGAATGAAGAGAGTGTTTG+GGG 0.642101 2.1:+10187424 MS.gene055771:CDS
CATGCGCCGTCGTTTCATGG+GGG 0.652534 2.1:-10187401 None:intergenic
TGTTGTGAGCTATACAAGGA+AGG 0.666542 2.1:-10187130 None:intergenic
TTGGTGTTGTGAGCTATACA+AGG 0.672420 2.1:-10187134 None:intergenic
AAAGCACACTCAAAGACTTG+TGG 0.679777 2.1:+10185830 MS.gene055771:CDS
GGATAGCTTTGTCACTCACA+GGG 0.679845 2.1:+10186640 MS.gene055771:CDS
AGAGAATACAAATGTGACTG+TGG 0.689229 2.1:+10185857 MS.gene055771:CDS
AATCTTCAACTTCATCGACG+TGG 0.715188 2.1:+10185596 MS.gene055771:CDS
ATCCGTTGATTGATGAACTG+TGG 0.722662 2.1:-10187490 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAACAATAAATAAAAAA+TGG - chr2.1:10186588-10186607 None:intergenic 10.0%
!! ATCAACAATAAATAAAAAAT+GGG - chr2.1:10186587-10186606 None:intergenic 10.0%
!! TTATATGGAATAAAATAAAA+GGG + chr2.1:10186178-10186197 MS.gene055771:intron 10.0%
!! AAAAAGGTAATAAACTTAAA+AGG - chr2.1:10186006-10186025 None:intergenic 15.0%
!! AATATAAACAACTCATTATT+AGG + chr2.1:10186713-10186732 MS.gene055771:CDS 15.0%
!! CTTATATGGAATAAAATAAA+AGG + chr2.1:10186177-10186196 MS.gene055771:intron 15.0%
!! GATTACTTATCAATATAATT+TGG + chr2.1:10186604-10186623 MS.gene055771:intron 15.0%
!! TAACATCGATAATAATAATA+AGG + chr2.1:10187078-10187097 MS.gene055771:CDS 15.0%
!!! AATTTTTCTCTCTAAAATAA+CGG + chr2.1:10186269-10186288 MS.gene055771:intron 15.0%
!!! TGTTTATAATTTAGAATAGA+GGG + chr2.1:10186504-10186523 MS.gene055771:intron 15.0%
!!! TTGTTTATAATTTAGAATAG+AGG + chr2.1:10186503-10186522 MS.gene055771:intron 15.0%
!! AAATAATAATCACAAAGGAA+AGG - chr2.1:10186104-10186123 None:intergenic 20.0%
!! AACAGAAATAATAATCACAA+AGG - chr2.1:10186109-10186128 None:intergenic 20.0%
!! AATAAATTCTCCTCTAATAA+TGG + chr2.1:10187010-10187029 MS.gene055771:CDS 20.0%
!! AATAAGTAACTAGAGTATAA+AGG - chr2.1:10185213-10185232 None:intergenic 20.0%
!! AATTACTTTGACTAATTTGA+GGG + chr2.1:10186131-10186150 MS.gene055771:intron 20.0%
!! AGAATTAGTATAACATAACT+AGG - chr2.1:10186552-10186571 None:intergenic 20.0%
!! TAATTACTTTGACTAATTTG+AGG + chr2.1:10186130-10186149 MS.gene055771:intron 20.0%
!! TCGATGTTATTATTAACTAA+TGG - chr2.1:10187067-10187086 None:intergenic 20.0%
!!! AAAATTTTATGCTGTTCAAT+CGG + chr2.1:10185802-10185821 MS.gene055771:CDS 20.0%
!!! TTTCTTTTCCTCTTTAAAAT+AGG - chr2.1:10185142-10185161 None:intergenic 20.0%
! AAAAATGAGTTCCTATGTTT+GGG - chr2.1:10186790-10186809 None:intergenic 25.0%
! AAACAACTCATTATTAGGAA+TGG + chr2.1:10186718-10186737 MS.gene055771:CDS 25.0%
! AACAACTCATTATTAGGAAT+GGG + chr2.1:10186719-10186738 MS.gene055771:CDS 25.0%
! CAAAAATGTACATTTACTTC+TGG - chr2.1:10186486-10186505 None:intergenic 25.0%
! GTATAGTGCAAATGAAAATT+GGG + chr2.1:10186979-10186998 MS.gene055771:CDS 25.0%
! GTTATTAGCTACTAATAGTT+TGG + chr2.1:10186048-10186067 MS.gene055771:intron 25.0%
! TATAACATAACTAGGTTGTA+GGG - chr2.1:10186544-10186563 None:intergenic 25.0%
! TGTATAGTGCAAATGAAAAT+TGG + chr2.1:10186978-10186997 MS.gene055771:CDS 25.0%
!! ATCATGGGAATAAATTTTGT+GGG + chr2.1:10187296-10187315 MS.gene055771:CDS 25.0%
!! TGGAAAATAGAAGTCTTATA+TGG + chr2.1:10186163-10186182 MS.gene055771:intron 25.0%
!!! AAAATCCTCCTATTTTAAAG+AGG + chr2.1:10185131-10185150 MS.gene055771:intron 25.0%
!!! AAACACATGTTTTGATTTGT+TGG - chr2.1:10185366-10185385 None:intergenic 25.0%
AAAGAACGAGCAAAGAAATA+AGG + chr2.1:10185645-10185664 MS.gene055771:CDS 30.0%
ACTAATCAAACATCTAGATC+AGG + chr2.1:10186851-10186870 MS.gene055771:CDS 30.0%
ATAGACACAAAACATTGATG+CGG - chr2.1:10185441-10185460 None:intergenic 30.0%
CCAAGAGAATTTATCCAATT+AGG - chr2.1:10186348-10186367 None:intergenic 30.0%
CCTAATTGGATAAATTCTCT+TGG + chr2.1:10186345-10186364 MS.gene055771:intron 30.0%
GAAAAATGAGTTCCTATGTT+TGG - chr2.1:10186791-10186810 None:intergenic 30.0%
GAAGAAACAGCTAGAATAAA+TGG + chr2.1:10186683-10186702 MS.gene055771:CDS 30.0%
GATCTAGATGTTTGATTAGT+TGG - chr2.1:10186851-10186870 None:intergenic 30.0%
GTATAACATAACTAGGTTGT+AGG - chr2.1:10186545-10186564 None:intergenic 30.0%
GTGTGTGAAATTTGTCTAAA+GGG + chr2.1:10185557-10185576 MS.gene055771:CDS 30.0%
TCAACTGAATCATTATTCCT+TGG + chr2.1:10187238-10187257 MS.gene055771:CDS 30.0%
! AATAAATTTTGTGGGGTGTA+TGG + chr2.1:10187304-10187323 MS.gene055771:CDS 30.0%
! GATCATGGGAATAAATTTTG+TGG + chr2.1:10187295-10187314 MS.gene055771:CDS 30.0%
! GCTACTAATAGTTTGGATTT+TGG + chr2.1:10186055-10186074 MS.gene055771:intron 30.0%
! TCATGGGAATAAATTTTGTG+GGG + chr2.1:10187297-10187316 MS.gene055771:CDS 30.0%
! TTGTCTAAAGGGTTTTCAAA+GGG + chr2.1:10185568-10185587 MS.gene055771:CDS 30.0%
! TTTGTCTAAAGGGTTTTCAA+AGG + chr2.1:10185567-10185586 MS.gene055771:CDS 30.0%
! TTTGTTGCCATCAATGTTTT+TGG - chr2.1:10185530-10185549 None:intergenic 30.0%
!! AATATAATTTGGTGCAACAC+AGG + chr2.1:10186615-10186634 MS.gene055771:intron 30.0%
!! TTTGATGATGAGATTCTGAT+TGG - chr2.1:10187156-10187175 None:intergenic 30.0%
!!! AACTTGTTGTGTTTTCATGA+AGG - chr2.1:10185102-10185121 None:intergenic 30.0%
!!! CTTTTCCTCTTTAAAATAGG+AGG - chr2.1:10185139-10185158 None:intergenic 30.0%
!!! TGTTTTGATTTGTTGGAAAC+TGG - chr2.1:10185359-10185378 None:intergenic 30.0%
AAAGGGACTTAAATCCTCAA+CGG + chr2.1:10186195-10186214 MS.gene055771:intron 35.0%
AAAGTAGAGTGAAGCCTAAT+TGG + chr2.1:10186331-10186350 MS.gene055771:intron 35.0%
AAGGATATTACTTCTGCTTC+AGG - chr2.1:10185503-10185522 None:intergenic 35.0%
AATAGTCCAAGTCAAGATCA+TGG + chr2.1:10187280-10187299 MS.gene055771:CDS 35.0%
AATTCTCTTGTCCCAAACAT+AGG + chr2.1:10186776-10186795 MS.gene055771:CDS 35.0%
AGAGAATACAAATGTGACTG+TGG + chr2.1:10185857-10185876 MS.gene055771:CDS 35.0%
ATAGTCCAAGTCAAGATCAT+GGG + chr2.1:10187281-10187300 MS.gene055771:CDS 35.0%
ATGCATGAGATTCATCAACT+TGG + chr2.1:10186932-10186951 MS.gene055771:CDS 35.0%
CCGACGCTAAAATTTCAATA+GGG + chr2.1:10186408-10186427 MS.gene055771:intron 35.0%
CGACATCTCTTTAGATTGAA+AGG + chr2.1:10185329-10185348 MS.gene055771:intron 35.0%
CGACGCTAAAATTTCAATAG+GGG + chr2.1:10186409-10186428 MS.gene055771:intron 35.0%
CGTGTGTGAAATTTGTCTAA+AGG + chr2.1:10185556-10185575 MS.gene055771:CDS 35.0%
CTAGATCAGGTTTATCTCTT+TGG + chr2.1:10186864-10186883 MS.gene055771:CDS 35.0%
CTCTTGACATCCATTATTAG+AGG - chr2.1:10187023-10187042 None:intergenic 35.0%
CTTGTCACCAAAAACATTGA+TGG + chr2.1:10185520-10185539 MS.gene055771:CDS 35.0%
GACAAATTTCACACACGAAT+CGG - chr2.1:10185553-10185572 None:intergenic 35.0%
GCAAATGAAAATTGGGTGTT+TGG + chr2.1:10186986-10187005 MS.gene055771:CDS 35.0%
TAATTTGAGGGTTGAGATTG+TGG + chr2.1:10186143-10186162 MS.gene055771:intron 35.0%
TACTTGCAACAAGTGATCTT+GGG + chr2.1:10187338-10187357 MS.gene055771:CDS 35.0%
TCATTATTCCTTGGAAGCTT+AGG + chr2.1:10187247-10187266 MS.gene055771:CDS 35.0%
TGCAAAAAGCTGCTCAAATT+GGG + chr2.1:10187209-10187228 MS.gene055771:CDS 35.0%
TGCATGAGATTCATCAACTT+GGG + chr2.1:10186933-10186952 MS.gene055771:CDS 35.0%
TGTTCACAATCATCCTTCAA+GGG + chr2.1:10185700-10185719 MS.gene055771:CDS 35.0%
TTATTCCCATGATCTTGACT+TGG - chr2.1:10187289-10187308 None:intergenic 35.0%
TTGCAAAAAGCTGCTCAAAT+TGG + chr2.1:10187208-10187227 MS.gene055771:CDS 35.0%
TTTATGCTGTTCAATCGGAT+TGG + chr2.1:10185807-10185826 MS.gene055771:CDS 35.0%
!! ACTTGTCTAGTGCTCTAAAA+TGG + chr2.1:10185963-10185982 MS.gene055771:intron 35.0%
!! CCCTATTGAAATTTTAGCGT+CGG - chr2.1:10186411-10186430 None:intergenic 35.0%
!! TCTTGATTTGTGCATGAGAT+TGG - chr2.1:10186827-10186846 None:intergenic 35.0%
!!! CATCAATGTTTTTGGTGACA+AGG - chr2.1:10185522-10185541 None:intergenic 35.0%
!!! GGATAAAGAAGCACTTTTGT+AGG + chr2.1:10185741-10185760 MS.gene055771:CDS 35.0%
AAAGCACACTCAAAGACTTG+TGG + chr2.1:10185830-10185849 MS.gene055771:CDS 40.0%
AAGAGGAAAAGAAACCTTCC+TGG + chr2.1:10185148-10185167 MS.gene055771:intron 40.0%
AATCATCCTTCAAGGGCTTT+GGG + chr2.1:10185707-10185726 MS.gene055771:CDS 40.0%
AATCTTCAACTTCATCGACG+TGG + chr2.1:10185596-10185615 MS.gene055771:CDS 40.0%
ACAGTTCATCAATCAACGGA+TGG + chr2.1:10187492-10187511 MS.gene055771:CDS 40.0%
ATCTCAAACCTAAGCTTCCA+AGG - chr2.1:10187258-10187277 None:intergenic 40.0%
CGTTGAAGATAGCTGCAAAA+AGG - chr2.1:10186022-10186041 None:intergenic 40.0%
GATTGATGAACTGTGGCAAA+TGG - chr2.1:10187486-10187505 None:intergenic 40.0%
GCCGACGCTAAAATTTCAAT+AGG + chr2.1:10186407-10186426 MS.gene055771:intron 40.0%
GGAATGGGAGTTAACAACAT+TGG + chr2.1:10186734-10186753 MS.gene055771:CDS 40.0%
GTACTTGCAACAAGTGATCT+TGG + chr2.1:10187337-10187356 MS.gene055771:CDS 40.0%
GTGTTCACAATCATCCTTCA+AGG + chr2.1:10185699-10185718 MS.gene055771:CDS 40.0%
TCAAGTACTATACTCCGTTG+AGG - chr2.1:10186212-10186231 None:intergenic 40.0%
TGCCACAGTTCATCAATCAA+CGG + chr2.1:10187488-10187507 MS.gene055771:CDS 40.0%
TGTTGTGAGCTATACAAGGA+AGG - chr2.1:10187133-10187152 None:intergenic 40.0%
TTGTGAACACATGTCTTCTC+TGG - chr2.1:10185689-10185708 None:intergenic 40.0%
! AAGCACTTTTGTAGGAAGCA+CGG + chr2.1:10185749-10185768 MS.gene055771:CDS 40.0%
! ACTGTGGCACTATCTTTTCA+AGG + chr2.1:10185873-10185892 MS.gene055771:CDS 40.0%
! ATCCGTTGATTGATGAACTG+TGG - chr2.1:10187493-10187512 None:intergenic 40.0%
! GGACAAACTAGGGATTTTCT+TGG + chr2.1:10187445-10187464 MS.gene055771:CDS 40.0%
!! ACTAGGGATTTTCTTGGTGT+TGG + chr2.1:10187451-10187470 MS.gene055771:CDS 40.0%
!! ATAATTTGGTGCAACACAGG+AGG + chr2.1:10186618-10186637 MS.gene055771:intron 40.0%
!! CAGAATGAAGAGAGTGTTTG+GGG + chr2.1:10187424-10187443 MS.gene055771:CDS 40.0%
!! GCAGAATGAAGAGAGTGTTT+GGG + chr2.1:10187423-10187442 MS.gene055771:CDS 40.0%
!! TAATTTGGTGCAACACAGGA+GGG + chr2.1:10186619-10186638 MS.gene055771:intron 40.0%
!! TCTAGCTGTTTCTTCTGCTA+AGG - chr2.1:10186678-10186697 None:intergenic 40.0%
!! TGCAGAATGAAGAGAGTGTT+TGG + chr2.1:10187422-10187441 MS.gene055771:CDS 40.0%
!! TTGGTGTTGTGAGCTATACA+AGG - chr2.1:10187137-10187156 None:intergenic 40.0%
AATCCAGGCAAGCTTCTTCA+TGG + chr2.1:10185172-10185191 MS.gene055771:intron 45.0%
AGAAACCTTCCTGGAAATCC+AGG + chr2.1:10185157-10185176 MS.gene055771:intron 45.0%
CAATCATCCTTCAAGGGCTT+TGG + chr2.1:10185706-10185725 MS.gene055771:CDS 45.0%
CTCTGCAAACATGTCAGCAA+CGG + chr2.1:10187180-10187199 MS.gene055771:CDS 45.0%
GAGTGTTTGGGGACAAACTA+GGG + chr2.1:10187435-10187454 MS.gene055771:CDS 45.0%
GATGCGGACACATATCAACA+CGG - chr2.1:10185425-10185444 None:intergenic 45.0%
GTTCTTTGCTTCAGCTTCCA+AGG - chr2.1:10185632-10185651 None:intergenic 45.0%
TCAGCAGAGAGCTACATTTC+AGG + chr2.1:10187361-10187380 MS.gene055771:CDS 45.0%
TTTGCTTCAGCTTCCAAGGA+AGG - chr2.1:10185628-10185647 None:intergenic 45.0%
! AGAGTGTTTGGGGACAAACT+AGG + chr2.1:10187434-10187453 MS.gene055771:CDS 45.0%
!! GGATAGCTTTGTCACTCACA+GGG + chr2.1:10186640-10186659 MS.gene055771:CDS 45.0%
!!! AGGGATTTTCTTGGTGTTGG+TGG + chr2.1:10187454-10187473 MS.gene055771:CDS 45.0%
AAATGCCCCCCATGAAACGA+CGG + chr2.1:10187395-10187414 MS.gene055771:CDS 50.0%
AAGCCATGAAGAAGCTTGCC+TGG - chr2.1:10185178-10185197 None:intergenic 50.0%
AAGTCTCCCAAAGCCCTTGA+AGG - chr2.1:10185716-10185735 None:intergenic 50.0%
AGAAGCTTGCCTGGATTTCC+AGG - chr2.1:10185169-10185188 None:intergenic 50.0%
CATTGCTCCTGTGCTTGTAG+CGG - chr2.1:10186960-10186979 None:intergenic 50.0%
CGTTGCTGACATGTTTGCAG+AGG - chr2.1:10187182-10187201 None:intergenic 50.0%
GACGTGGACATAACCTTCCT+TGG + chr2.1:10185612-10185631 MS.gene055771:CDS 50.0%
!! AGGGCTTTGGGAGACTTAAC+TGG + chr2.1:10185719-10185738 MS.gene055771:CDS 50.0%
!! GGGATAGCTTTGTCACTCAC+AGG + chr2.1:10186639-10186658 MS.gene055771:CDS 50.0%
!! GGGCTTTGGGAGACTTAACT+GGG + chr2.1:10185720-10185739 MS.gene055771:CDS 50.0%
GCTTGCCTGGATTTCCAGGA+AGG - chr2.1:10185165-10185184 None:intergenic 55.0%
TGCATGCGCCGTCGTTTCAT+GGG - chr2.1:10187406-10187425 None:intergenic 55.0%
! GGAAGCACGGTGAGAAGAAG+TGG + chr2.1:10185762-10185781 MS.gene055771:CDS 55.0%
ATGCGCCGTCGTTTCATGGG+GGG - chr2.1:10187403-10187422 None:intergenic 60.0%
CATGCGCCGTCGTTTCATGG+GGG - chr2.1:10187404-10187423 None:intergenic 60.0%
CTGCATGCGCCGTCGTTTCA+TGG - chr2.1:10187407-10187426 None:intergenic 60.0%
CTTGGGTCCGCTACAAGCAC+AGG + chr2.1:10186950-10186969 MS.gene055771:CDS 60.0%
GCATGCGCCGTCGTTTCATG+GGG - chr2.1:10187405-10187424 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10185070 10187525 10185070 ID=MS.gene055771
chr2.1 mRNA 10185070 10187525 10185070 ID=MS.gene055771.t1;Parent=MS.gene055771
chr2.1 exon 10185070 10185118 10185070 ID=MS.gene055771.t1.exon1;Parent=MS.gene055771.t1
chr2.1 CDS 10185070 10185118 10185070 ID=cds.MS.gene055771.t1;Parent=MS.gene055771.t1
chr2.1 exon 10185498 10185894 10185498 ID=MS.gene055771.t1.exon2;Parent=MS.gene055771.t1
chr2.1 CDS 10185498 10185894 10185498 ID=cds.MS.gene055771.t1;Parent=MS.gene055771.t1
chr2.1 exon 10186637 10187525 10186637 ID=MS.gene055771.t1.exon3;Parent=MS.gene055771.t1
chr2.1 CDS 10186637 10187525 10186637 ID=cds.MS.gene055771.t1;Parent=MS.gene055771.t1
Gene Sequence

>MS.gene055771

ATGGACAATAGAGAAATTTCAAATGCTTTCCTTCATGAAAACACAACAAGTTCATCAAATGAAAATCCTCCTATTTTAAAGAGGAAAAGAAACCTTCCTGGAAATCCAGGCAAGCTTCTTCATGGCTTATCTCTATTTTTCCTTTATACTCTAGTTACTTATTCTTATCTTAAATATATTAAAATTTCAAAGCTAATTAATTATCTTTTTATTTTTACATAATAATTAAGAAGCAAATGATTTTTTATATACAATGTAACGACATCTCTTTAGATTGAAAGGTTGTCCAGTTTCCAACAAATCAAAACATGTGTTTATATTCAATAAATTAATTTTTTTCTCGAGTTATTTACCGTGTTGATATGTGTCCGCATCAATGTTTTGTGTCTATGTTAGTGTTTCATAGATTGTATTCTATGCACATGCAGATCCTGAAGCAGAAGTAATATCCTTGTCACCAAAAACATTGATGGCAACAAACCGATTCGTGTGTGAAATTTGTCTAAAGGGTTTTCAAAGGGATCAAAATCTTCAACTTCATCGACGTGGACATAACCTTCCTTGGAAGCTGAAGCAAAGAACGAGCAAAGAAATAAGGAAGAGAGTGTATGTGTGTCCAGAGAAGACATGTGTTCACAATCATCCTTCAAGGGCTTTGGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAATTTTATGCTGTTCAATCGGATTGGAAAGCACACTCAAAGACTTGTGGTACTAGAGAATACAAATGTGACTGTGGCACTATCTTTTCAAGGTAATTAATTTCTGTTTTCTTAACTCTCAGATATGTCATATACTCAAAAAAATTATGTCAAAGTTGTAACTTGTCTAGTGCTCTAAAATGGATCATCATTGAAAGAATCCTTTTAAGTTTATTACCTTTTTGCAGCTATCTTCAACGACAAAAGTTATTAGCTACTAATAGTTTGGATTTTGGAATTATCTAATTATATTAATCTACCTTTCCTTTGTGATTATTATTTCTGTTTTAATTACTTTGACTAATTTGAGGGTTGAGATTGTGGAAAATAGAAGTCTTATATGGAATAAAATAAAAGGGACTTAAATCCTCAACGGAGTATAGTACTTGAAGTGATCGTTACATTTAGAGAGAAAAACAAATCTACTAATTTTTCTCTCTAAAATAACGGTCTCTAGCTACTATTGATCACTTAAGATTAAAGAGTTGCAAAGTAGAGTGAAGCCTAATTGGATAAATTCTCTTGGATCATACTAATATTCAATAAGCAAATACTTTTCAATTGAGCCGACGCTAAAATTTCAATAGGGGTTTACACTTACTCTAATCTTAACTATAGACAAAAATACACATTTATTATGTCCAGAAGTAAATGTACATTTTTGTTTATAATTTAGAATAGAGGGAATACAAGCTATGACCCTACAACCTAGTTATGTTATACTAATTCTCTTACATTAATTCCCATTTTTTATTTATTGTTGATTACTTATCAATATAATTTGGTGCAACACAGGAGGGATAGCTTTGTCACTCACAGGGCATTCTGTGATGCCTTAGCAGAAGAAACAGCTAGAATAAATGGATCAGCAAATATAAACAACTCATTATTAGGAATGGGAGTTAACAACATTGGTAATTACAACATCATGCAAAATTCTCTTGTCCCAAACATAGGAACTCATTTTTCTTCAATTTTCAAACCAATCTCATGCACAAATCAAGAACCAACTAATCAAACATCTAGATCAGGTTTATCTCTTTGGATGTCTCAAACATCTCATGACACAATATTGACTAATAATAGCAATATGCATGAGATTCATCAACTTGGGTCCGCTACAAGCACAGGAGCAATGTATAGTGCAAATGAAAATTGGGTGTTTGGAAATAAATTCTCCTCTAATAATGGATGTCAAGAGTTAACTAGTTCTGTTTCACTTCCATTAGTTAATAATAACATCGATAATAATAATAAGGATAGTACTACAAACAATGTTGTTAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCAGAATCTCATCATCAAACAACCTCTGCAAACATGTCAGCAACGGCTTTGTTGCAAAAAGCTGCTCAAATTGGGACAACTTCAACTGAATCATTATTCCTTGGAAGCTTAGGTTTGAGATGCAATAGTCCAAGTCAAGATCATGGGAATAAATTTTGTGGGGTGTATGGTTCAAGTTCAGTACTTGCAACAAGTGATCTTGGGTCAGCAGAGAGCTACATTTCAGGTGAATTGTCACAAATGCCCCCCATGAAACGACGGCGCATGCAGAATGAAGAGAGTGTTTGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCTAACCATTTGCCACAGTTCATCAATCAACGGATGGATTTGATTTGA
Protein sequence

>MS.gene055771.t1

MDNREISNAFLHENTTNPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSANINNSLLGMGVNNIGNYNIMQNSLVPNIGTHFSSIFKPISCTNQEPTNQTSRSGLSLWMSQTSHDTILTNNSNMHEIHQLGSATSTGAMYSANENWVFGNKFSSNNGCQELTSSVSLPLVNNNIDNNNKDSTTNNVVSVPSLYSSQHQSESHHQTTSANMSATALLQKAAQIGTTSTESLFLGSLGLRCNSPSQDHGNKFCGVYGSSSVLATSDLGSAESYISGELSQMPPMKRRRMQNEESVWGQTRDFLGVGGANHLPQFINQRMDLI