Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006634.t1 | XP_024638423.1 | 93.4 | 438 | 28 | 1 | 1 | 437 | 63 | 500 | 1.50E-227 | 798.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006634.t1 | Q9ZWA6 | 50.8 | 478 | 158 | 11 | 1 | 437 | 65 | 506 | 1.6e-108 | 394.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006634.t1 | A0A396IAJ3 | 93.4 | 438 | 28 | 1 | 1 | 437 | 63 | 500 | 1.1e-227 | 798.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene006634.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006634.t1 | MTR_2g090745 | 63.279 | 433 | 99 | 18 | 1 | 423 | 31 | 413 | 3.38e-157 | 451 |
MS.gene006634.t1 | MTR_2g099990 | 87.857 | 140 | 17 | 0 | 1 | 140 | 1 | 140 | 2.18e-93 | 287 |
MS.gene006634.t1 | MTR_2g099990 | 87.857 | 140 | 17 | 0 | 1 | 140 | 70 | 209 | 2.51e-93 | 290 |
MS.gene006634.t1 | MTR_4g059870 | 41.379 | 464 | 164 | 16 | 1 | 423 | 62 | 458 | 6.42e-93 | 289 |
MS.gene006634.t1 | MTR_8g017210 | 88.571 | 140 | 16 | 0 | 1 | 140 | 86 | 225 | 8.27e-93 | 290 |
MS.gene006634.t1 | MTR_1g094115 | 86.232 | 138 | 19 | 0 | 1 | 138 | 71 | 208 | 3.07e-90 | 284 |
MS.gene006634.t1 | MTR_1g112270 | 57.959 | 245 | 82 | 6 | 1 | 237 | 68 | 299 | 2.62e-89 | 282 |
MS.gene006634.t1 | MTR_1g112270 | 57.959 | 245 | 82 | 6 | 1 | 237 | 79 | 310 | 2.98e-89 | 282 |
MS.gene006634.t1 | MTR_1g016010 | 80.667 | 150 | 28 | 1 | 1 | 149 | 65 | 214 | 3.57e-88 | 276 |
MS.gene006634.t1 | MTR_1g094115 | 85.075 | 134 | 20 | 0 | 5 | 138 | 58 | 191 | 7.25e-87 | 275 |
MS.gene006634.t1 | MTR_2g093960 | 68.208 | 173 | 45 | 2 | 1 | 172 | 56 | 219 | 4.21e-85 | 266 |
MS.gene006634.t1 | MTR_2g017720 | 81.188 | 101 | 14 | 1 | 1 | 101 | 337 | 432 | 3.10e-50 | 176 |
MS.gene006634.t1 | MTR_3g102000 | 80.233 | 86 | 14 | 1 | 13 | 98 | 49 | 131 | 1.08e-41 | 147 |
MS.gene006634.t1 | MTR_1g093095 | 33.557 | 149 | 86 | 5 | 1 | 137 | 110 | 257 | 8.68e-17 | 80.9 |
MS.gene006634.t1 | MTR_5g030560 | 83.871 | 31 | 5 | 0 | 1 | 31 | 30 | 60 | 7.78e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006634.t1 | AT1G03840 | 50.837 | 478 | 158 | 13 | 1 | 437 | 63 | 504 | 1.70e-134 | 396 |
MS.gene006634.t1 | AT1G03840 | 50.837 | 478 | 158 | 13 | 1 | 437 | 65 | 506 | 1.89e-134 | 396 |
MS.gene006634.t1 | AT5G44160 | 49.893 | 469 | 140 | 15 | 1 | 437 | 22 | 427 | 9.58e-130 | 381 |
MS.gene006634.t1 | AT5G44160 | 49.893 | 469 | 140 | 15 | 1 | 437 | 61 | 466 | 1.04e-129 | 383 |
MS.gene006634.t1 | AT2G02080 | 43.736 | 439 | 191 | 10 | 1 | 423 | 1 | 399 | 1.40e-95 | 294 |
MS.gene006634.t1 | AT2G02080 | 43.736 | 439 | 191 | 10 | 1 | 423 | 1 | 399 | 1.40e-95 | 294 |
MS.gene006634.t1 | AT2G02080 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 5.38e-95 | 295 |
MS.gene006634.t1 | AT2G02080 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 5.38e-95 | 295 |
MS.gene006634.t1 | AT2G02080 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 5.38e-95 | 295 |
MS.gene006634.t1 | AT2G02080 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 5.38e-95 | 295 |
MS.gene006634.t1 | AT3G50700 | 87.770 | 139 | 17 | 0 | 1 | 139 | 58 | 196 | 5.77e-94 | 291 |
MS.gene006634.t1 | AT5G66730 | 87.050 | 139 | 18 | 0 | 1 | 139 | 56 | 194 | 1.20e-92 | 289 |
MS.gene006634.t1 | AT5G03150 | 66.204 | 216 | 54 | 5 | 1 | 205 | 77 | 284 | 7.03e-92 | 287 |
MS.gene006634.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 75 | 214 | 7.47e-90 | 281 |
MS.gene006634.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 89 | 228 | 7.78e-90 | 282 |
MS.gene006634.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 94 | 233 | 9.00e-90 | 282 |
MS.gene006634.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 94 | 233 | 9.00e-90 | 282 |
MS.gene006634.t1 | AT3G45260 | 76.687 | 163 | 33 | 2 | 1 | 158 | 63 | 225 | 9.77e-90 | 280 |
MS.gene006634.t1 | AT3G45260 | 76.687 | 163 | 33 | 2 | 1 | 158 | 63 | 225 | 9.77e-90 | 280 |
MS.gene006634.t1 | AT1G14580 | 84.173 | 139 | 22 | 0 | 1 | 139 | 77 | 215 | 9.85e-90 | 280 |
MS.gene006634.t1 | AT1G14580 | 84.173 | 139 | 22 | 0 | 1 | 139 | 77 | 215 | 9.85e-90 | 280 |
MS.gene006634.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 81 | 220 | 1.01e-89 | 281 |
MS.gene006634.t1 | AT3G13810 | 88.571 | 140 | 15 | 1 | 1 | 139 | 95 | 234 | 1.25e-89 | 281 |
MS.gene006634.t1 | AT1G14580 | 84.173 | 139 | 22 | 0 | 1 | 139 | 91 | 229 | 1.64e-89 | 280 |
MS.gene006634.t1 | AT2G02070 | 84.892 | 139 | 21 | 0 | 1 | 139 | 76 | 214 | 1.84e-89 | 283 |
MS.gene006634.t1 | AT2G02070 | 84.892 | 139 | 21 | 0 | 1 | 139 | 76 | 214 | 1.84e-89 | 283 |
MS.gene006634.t1 | AT1G55110 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 5.94e-89 | 278 |
MS.gene006634.t1 | AT1G55110 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 5.94e-89 | 278 |
MS.gene006634.t1 | AT1G55110 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 5.94e-89 | 278 |
MS.gene006634.t1 | AT4G02670 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 2.26e-86 | 270 |
MS.gene006634.t1 | AT4G02670 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 2.56e-86 | 269 |
MS.gene006634.t1 | AT2G01940 | 64.925 | 134 | 45 | 2 | 1 | 132 | 68 | 201 | 6.38e-58 | 197 |
MS.gene006634.t1 | AT1G68130 | 64.394 | 132 | 45 | 2 | 1 | 130 | 65 | 196 | 2.00e-57 | 195 |
MS.gene006634.t1 | AT1G25250 | 63.910 | 133 | 45 | 2 | 1 | 130 | 34 | 166 | 2.17e-57 | 193 |
MS.gene006634.t1 | AT1G25250 | 63.910 | 133 | 45 | 2 | 1 | 130 | 57 | 189 | 2.68e-57 | 193 |
MS.gene006634.t1 | AT2G01940 | 63.704 | 135 | 46 | 3 | 1 | 132 | 68 | 202 | 4.31e-54 | 187 |
MS.gene006634.t1 | AT2G01940 | 66.071 | 112 | 36 | 2 | 23 | 132 | 1 | 112 | 2.42e-45 | 161 |
MS.gene006634.t1 | AT1G68130 | 65.455 | 110 | 36 | 2 | 23 | 130 | 1 | 110 | 3.12e-45 | 160 |
MS.gene006634.t1 | AT1G25250 | 64.865 | 111 | 36 | 2 | 23 | 130 | 1 | 111 | 9.77e-45 | 158 |
MS.gene006634.t1 | AT1G34370 | 31.383 | 188 | 102 | 5 | 1 | 161 | 29 | 216 | 6.23e-21 | 92.8 |
MS.gene006634.t1 | AT5G22890 | 33.566 | 143 | 81 | 3 | 1 | 129 | 212 | 354 | 6.35e-21 | 94.4 |
MS.gene006634.t1 | AT1G34370 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 1.03e-20 | 94.7 |
MS.gene006634.t1 | AT1G34370 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 1.03e-20 | 94.7 |
MS.gene006634.t1 | AT1G13290 | 33.557 | 149 | 87 | 5 | 1 | 138 | 96 | 243 | 5.01e-17 | 81.6 |
MS.gene006634.t1 | AT1G34790 | 34.615 | 156 | 85 | 5 | 6 | 145 | 145 | 299 | 1.18e-16 | 80.9 |
MS.gene006634.t1 | AT3G20880 | 34.058 | 138 | 81 | 5 | 1 | 129 | 251 | 387 | 2.70e-16 | 80.9 |
MS.gene006634.t1 | AT3G57670 | 30.303 | 165 | 97 | 5 | 1 | 148 | 212 | 375 | 5.92e-16 | 79.7 |
MS.gene006634.t1 | AT1G08290 | 36.296 | 135 | 75 | 5 | 5 | 129 | 179 | 312 | 9.34e-16 | 78.6 |
MS.gene006634.t1 | AT1G51220 | 31.884 | 138 | 84 | 4 | 1 | 129 | 173 | 309 | 1.54e-15 | 77.8 |
Find 84 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAATAACTATCAGCTAAAT+TGG | 0.096349 | 4.4:+31836835 | MS.gene006634:CDS |
GTTTGAAAATTGAAGGAAAA+TGG | 0.140606 | 4.4:-31836596 | None:intergenic |
TGGGTTGGCATATTGTTATT+AGG | 0.224791 | 4.4:-31836576 | None:intergenic |
TAAACAACAGCTCATTATTA+AGG | 0.224931 | 4.4:+31836505 | MS.gene006634:CDS |
ACTTCATTCCTTGGAAGTTT+AGG | 0.253137 | 4.4:+31837098 | MS.gene006634:CDS |
AGGGCACTTGGTGACTTAAC+TGG | 0.259047 | 4.4:+31835494 | MS.gene006634:CDS |
AGCTGATAGTTATTAGAATA+TGG | 0.265620 | 4.4:-31836828 | None:intergenic |
TGGTAATTACACCAACATAA+TGG | 0.296549 | 4.4:+31836536 | MS.gene006634:CDS |
GGGTTGGCATATTGTTATTA+GGG | 0.301259 | 4.4:-31836575 | None:intergenic |
TAGTACTAGTAATTAATTCT+TGG | 0.306930 | 4.4:-31836890 | None:intergenic |
AAGATGTTAGATGTGGTATT+TGG | 0.334453 | 4.4:-31837010 | None:intergenic |
AAACATTAATGTTAATGTTA+AGG | 0.353425 | 4.4:+31836932 | MS.gene006634:CDS |
TGATGATCAGGAGTTGAAAT+TGG | 0.355744 | 4.4:-31836618 | None:intergenic |
TGCACATGTCTACGTTTAGA+AGG | 0.356777 | 4.4:-31837263 | None:intergenic |
GGTAATTACACCAACATAAT+GGG | 0.361813 | 4.4:+31836537 | MS.gene006634:CDS |
GGATAGTCCTCTAGTTTGAT+TGG | 0.388786 | 4.4:-31836661 | None:intergenic |
TCAAGTGATACTTCATTCCT+TGG | 0.409861 | 4.4:+31837089 | MS.gene006634:CDS |
TATACAAGGAAGAAATTTGT+TGG | 0.410040 | 4.4:-31836977 | None:intergenic |
TAATAACTATCAGCTAAATT+GGG | 0.410339 | 4.4:+31836836 | MS.gene006634:CDS |
GAAATTGGTTTGAAAATTGA+AGG | 0.411531 | 4.4:-31836603 | None:intergenic |
AAACAACAGCTCATTATTAA+GGG | 0.419315 | 4.4:+31836506 | MS.gene006634:CDS |
CCTTGCTGTTTCTTCTGCTA+AGG | 0.425077 | 4.4:-31836463 | None:intergenic |
ATGGAGGAGGAGGGCAAACT+AGG | 0.425755 | 4.4:+31837297 | MS.gene006634:CDS |
TTTGAAAATTGAAGGAAAAT+GGG | 0.430601 | 4.4:-31836595 | None:intergenic |
GTGTCCACCATGATCCTTCA+AGG | 0.447211 | 4.4:+31835474 | MS.gene006634:CDS |
AAACTAGAGGACTATCCCTT+TGG | 0.451953 | 4.4:+31836667 | MS.gene006634:CDS |
ACTAATGATGTGAACAAGTT+TGG | 0.457937 | 4.4:+31837146 | MS.gene006634:CDS |
GTTATGCTGTTCAGTCAGAT+TGG | 0.460465 | 4.4:+31835582 | MS.gene006634:CDS |
GTGAACAAGTTTGGTGGTAC+TGG | 0.464971 | 4.4:+31837155 | MS.gene006634:CDS |
TTCTGCTAAGGCATCACAAA+AGG | 0.465130 | 4.4:-31836451 | None:intergenic |
GCTCTCTGCTTAAGCTTCCA+TGG | 0.471864 | 4.4:-31835404 | None:intergenic |
AAAATTGAAGGAAAATGGGT+TGG | 0.476598 | 4.4:-31836591 | None:intergenic |
ATCCAACCGTTGATTGATGA+AGG | 0.480114 | 4.4:-31837356 | None:intergenic |
AAGTCACCAAGTGCCCTTGA+AGG | 0.485801 | 4.4:-31835488 | None:intergenic |
CAAGGTGAAGAGAATGGAGG+AGG | 0.488030 | 4.4:+31837284 | MS.gene006634:CDS |
GGTGAAGAGAATGGAGGAGG+AGG | 0.498727 | 4.4:+31837287 | MS.gene006634:CDS |
AGTTCATTACTCATTAGTCT+TGG | 0.500073 | 4.4:+31837194 | MS.gene006634:CDS |
TTTGGTGGTACTGGTATGTA+TGG | 0.508130 | 4.4:+31837164 | MS.gene006634:CDS |
CAAACTAGAATTTCCATTGG+TGG | 0.513839 | 4.4:-31836736 | None:intergenic |
CATGATCCTTCAAGGGCACT+TGG | 0.515364 | 4.4:+31835482 | MS.gene006634:CDS |
ACCCTTCATCAATCAACGGT+TGG | 0.521243 | 4.4:+31837354 | MS.gene006634:CDS |
ACTAGAATTTCCATTGGTGG+TGG | 0.523314 | 4.4:-31836733 | None:intergenic |
GGGCACTTGGTGACTTAACT+GGG | 0.533578 | 4.4:+31835495 | MS.gene006634:CDS |
GAAAGCATGGTGAAAAGAAG+TGG | 0.534661 | 4.4:+31835537 | MS.gene006634:CDS |
TCATCAAGAGAAATTATGTA+TGG | 0.535107 | 4.4:+31836786 | MS.gene006634:CDS |
AGATGTTGTTCCCATTATGT+TGG | 0.540728 | 4.4:-31836547 | None:intergenic |
CAAGTGCCCTTGAAGGATCA+TGG | 0.541455 | 4.4:-31835481 | None:intergenic |
TGGAGGAGGAGGGCAAACTA+GGG | 0.541684 | 4.4:+31837298 | MS.gene006634:CDS |
GATTGATGAAGGGTGACAAA+TGG | 0.546230 | 4.4:-31837345 | None:intergenic |
ACAATGATAACCACCACCAA+TGG | 0.547801 | 4.4:+31836723 | MS.gene006634:CDS |
TAGTTATTAGAATATGGTGG+AGG | 0.547810 | 4.4:-31836822 | None:intergenic |
GTGGTTATCATTGTTTCATG+AGG | 0.548154 | 4.4:-31836714 | None:intergenic |
ACTCATTAGTCTTGGCAATG+AGG | 0.548463 | 4.4:+31837202 | MS.gene006634:CDS |
ATGCAAACTAGAATTTCCAT+TGG | 0.550334 | 4.4:-31836739 | None:intergenic |
ATTTCAAACCTAAACTTCCA+AGG | 0.550495 | 4.4:-31837106 | None:intergenic |
TCATTATTAAGGGGCAACAT+TGG | 0.553366 | 4.4:+31836516 | MS.gene006634:CDS |
TCAAGAGAAATTATGTATGG+TGG | 0.557028 | 4.4:+31836789 | MS.gene006634:CDS |
TTGTGTGAAACATGTGGGAA+AGG | 0.560203 | 4.4:+31835332 | MS.gene006634:CDS |
TTGGTGTTGTGAGCTATACA+AGG | 0.564753 | 4.4:-31836991 | None:intergenic |
GACGTGGACATAATCTTCCA+TGG | 0.576178 | 4.4:+31835387 | MS.gene006634:CDS |
GCACATGTCTACGTTTAGAA+GGG | 0.592522 | 4.4:-31837262 | None:intergenic |
TGTCACCCTTCATCAATCAA+CGG | 0.597702 | 4.4:+31837350 | MS.gene006634:CDS |
CATGTGCAAGGTGAAGAGAA+TGG | 0.598271 | 4.4:+31837278 | MS.gene006634:CDS |
AGTTATTAGAATATGGTGGA+GGG | 0.602415 | 4.4:-31836821 | None:intergenic |
GTGAAGAGAATGGAGGAGGA+GGG | 0.608002 | 4.4:+31837288 | MS.gene006634:CDS |
AACAACAGCTCATTATTAAG+GGG | 0.612489 | 4.4:+31836507 | MS.gene006634:CDS |
AAGGAATGAAGTATCACTTG+AGG | 0.616790 | 4.4:-31837087 | None:intergenic |
TTAACATTAATGTTTCCTAG+TGG | 0.620526 | 4.4:-31836924 | None:intergenic |
AATGATGTGAACAAGTTTGG+TGG | 0.623059 | 4.4:+31837149 | MS.gene006634:CDS |
TCCAACCGTTGATTGATGAA+GGG | 0.630023 | 4.4:-31837355 | None:intergenic |
TGTCCACCATGATCCTTCAA+GGG | 0.631692 | 4.4:+31835475 | MS.gene006634:CDS |
GAATCAACCAATCAAACTAG+AGG | 0.641739 | 4.4:+31836654 | MS.gene006634:CDS |
TGATAGTTATTAGAATATGG+TGG | 0.647387 | 4.4:-31836825 | None:intergenic |
CCTTAGCAGAAGAAACAGCA+AGG | 0.647661 | 4.4:+31836463 | MS.gene006634:CDS |
ACTACAACTTCACTTCCACT+AGG | 0.649669 | 4.4:+31836909 | MS.gene006634:CDS |
GATTCTTGTGTGAAACATGT+GGG | 0.660378 | 4.4:+31835327 | MS.gene006634:CDS |
AGATTCTTGTGTGAAACATG+TGG | 0.668573 | 4.4:+31835326 | MS.gene006634:CDS |
AGAGAATACAAATGTGACTG+TGG | 0.675625 | 4.4:+31835632 | MS.gene006634:CDS |
TCTAAACGTAGACATGTGCA+AGG | 0.685474 | 4.4:+31837266 | MS.gene006634:CDS |
CTTAGCAGAAGAAACAGCAA+GGG | 0.690135 | 4.4:+31836464 | MS.gene006634:CDS |
AATCTACAGCTACATAGACG+TGG | 0.700320 | 4.4:+31835371 | MS.gene006634:CDS |
TTTGCTGAAGATGTTAGATG+TGG | 0.702326 | 4.4:-31837017 | None:intergenic |
GTGCAAGGTGAAGAGAATGG+AGG | 0.708411 | 4.4:+31837281 | MS.gene006634:CDS |
GTGCCCTTGAAGGATCATGG+TGG | 0.739339 | 4.4:-31835478 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTATATATCTGATATA+AGG | + | chr4.4:31835812-31835831 | MS.gene006634:intron | 10.0% |
!! | GTTTATATATAAATATTAGA+AGG | - | chr4.4:31836339-31836358 | None:intergenic | 10.0% |
!!! | ATCAGATATATAATTTTTTT+TGG | - | chr4.4:31835809-31835828 | None:intergenic | 10.0% |
!!! | TTAATATTTGTGAATATTTT+TGG | + | chr4.4:31836394-31836413 | MS.gene006634:intron | 10.0% |
!! | AAACATTAATGTTAATGTTA+AGG | + | chr4.4:31836932-31836951 | MS.gene006634:CDS | 15.0% |
!! | TTAGTTTAAACAAATGATTA+AGG | + | chr4.4:31835925-31835944 | MS.gene006634:intron | 15.0% |
!! | TAATAACTATCAGCTAAATT+GGG | + | chr4.4:31836836-31836855 | MS.gene006634:CDS | 20.0% |
!! | TAGTACTAGTAATTAATTCT+TGG | - | chr4.4:31836893-31836912 | None:intergenic | 20.0% |
!! | TTTGAAAATTGAAGGAAAAT+GGG | - | chr4.4:31836598-31836617 | None:intergenic | 20.0% |
!!! | ATGTTTTTTTTTTGCCTATT+TGG | + | chr4.4:31835870-31835889 | MS.gene006634:intron | 20.0% |
! | AAACAACAGCTCATTATTAA+GGG | + | chr4.4:31836506-31836525 | MS.gene006634:CDS | 25.0% |
! | AATTATATACATAGTGAGTG+AGG | - | chr4.4:31836051-31836070 | None:intergenic | 25.0% |
! | AGCTGATAGTTATTAGAATA+TGG | - | chr4.4:31836831-31836850 | None:intergenic | 25.0% |
! | ATAAGGATCAAGTTTAAAAG+TGG | + | chr4.4:31835829-31835848 | MS.gene006634:intron | 25.0% |
! | CTAATAACTATCAGCTAAAT+TGG | + | chr4.4:31836835-31836854 | MS.gene006634:CDS | 25.0% |
! | GTTAACCAACTACTATATAT+AGG | + | chr4.4:31836111-31836130 | MS.gene006634:intron | 25.0% |
! | GTTTGAAAATTGAAGGAAAA+TGG | - | chr4.4:31836599-31836618 | None:intergenic | 25.0% |
! | TAAACAACAGCTCATTATTA+AGG | + | chr4.4:31836505-31836524 | MS.gene006634:CDS | 25.0% |
! | TAATCGGTATATCTGATATA+AGG | + | chr4.4:31835726-31835745 | MS.gene006634:intron | 25.0% |
! | TATACAAGGAAGAAATTTGT+TGG | - | chr4.4:31836980-31836999 | None:intergenic | 25.0% |
! | TATTCTCAAAAAAGCCAAAT+AGG | - | chr4.4:31835887-31835906 | None:intergenic | 25.0% |
! | TCATCAAGAGAAATTATGTA+TGG | + | chr4.4:31836786-31836805 | MS.gene006634:CDS | 25.0% |
! | TGATAGTTATTAGAATATGG+TGG | - | chr4.4:31836828-31836847 | None:intergenic | 25.0% |
! | TTAACATTAATGTTTCCTAG+TGG | - | chr4.4:31836927-31836946 | None:intergenic | 25.0% |
! | TTGAGAATAAAAAGTGAATG+AGG | + | chr4.4:31835898-31835917 | MS.gene006634:intron | 25.0% |
!! | AACTCATTAACCAAATCTTT+TGG | + | chr4.4:31836308-31836327 | MS.gene006634:intron | 25.0% |
!!! | AGAATTTTGATTCATCCAAA+GGG | - | chr4.4:31836685-31836704 | None:intergenic | 25.0% |
!!! | GAAATTGGTTTGAAAATTGA+AGG | - | chr4.4:31836606-31836625 | None:intergenic | 25.0% |
!!! | TTTATTTTCACACTAGTTTG+AGG | + | chr4.4:31836086-31836105 | MS.gene006634:intron | 25.0% |
AAAATTGAAGGAAAATGGGT+TGG | - | chr4.4:31836594-31836613 | None:intergenic | 30.0% | |
AACAACAGCTCATTATTAAG+GGG | + | chr4.4:31836507-31836526 | MS.gene006634:CDS | 30.0% | |
AAGATGTTAGATGTGGTATT+TGG | - | chr4.4:31837013-31837032 | None:intergenic | 30.0% | |
ACAAGCCTATATATAGTAGT+TGG | - | chr4.4:31836119-31836138 | None:intergenic | 30.0% | |
ACTAATGATGTGAACAAGTT+TGG | + | chr4.4:31837146-31837165 | MS.gene006634:CDS | 30.0% | |
AGCTAGACAAAAGTCAAAAT+GGG | - | chr4.4:31836182-31836201 | None:intergenic | 30.0% | |
ATGCAAACTAGAATTTCCAT+TGG | - | chr4.4:31836742-31836761 | None:intergenic | 30.0% | |
ATTTCAAACCTAAACTTCCA+AGG | - | chr4.4:31837109-31837128 | None:intergenic | 30.0% | |
GATCAAGTTTAAAAGTGGTT+AGG | + | chr4.4:31835834-31835853 | MS.gene006634:intron | 30.0% | |
GGTAATTACACCAACATAAT+GGG | + | chr4.4:31836537-31836556 | MS.gene006634:CDS | 30.0% | |
TAGTTATTAGAATATGGTGG+AGG | - | chr4.4:31836825-31836844 | None:intergenic | 30.0% | |
TCAAGAGAAATTATGTATGG+TGG | + | chr4.4:31836789-31836808 | MS.gene006634:CDS | 30.0% | |
TGATCAGAATAACATAGAGA+TGG | - | chr4.4:31835698-31835717 | None:intergenic | 30.0% | |
TGGTAATTACACCAACATAA+TGG | + | chr4.4:31836536-31836555 | MS.gene006634:CDS | 30.0% | |
TTACAAAAAGCTGCTCAAAT+TGG | + | chr4.4:31837059-31837078 | MS.gene006634:CDS | 30.0% | |
! | AGTTATTAGAATATGGTGGA+GGG | - | chr4.4:31836824-31836843 | None:intergenic | 30.0% |
! | AGTTCATTACTCATTAGTCT+TGG | + | chr4.4:31837194-31837213 | MS.gene006634:CDS | 30.0% |
! | TATCAGCTAAATTGGGTTTT+TGG | + | chr4.4:31836843-31836862 | MS.gene006634:CDS | 30.0% |
!!! | GAGAATTTTGATTCATCCAA+AGG | - | chr4.4:31836686-31836705 | None:intergenic | 30.0% |
AAAGCTCACTCAAAAACATG+TGG | + | chr4.4:31835605-31835624 | MS.gene006634:CDS | 35.0% | |
AAAGTCAAAATGGGAGTAAC+CGG | - | chr4.4:31836173-31836192 | None:intergenic | 35.0% | |
AATGATGTGAACAAGTTTGG+TGG | + | chr4.4:31837149-31837168 | MS.gene006634:CDS | 35.0% | |
ACTTCATTCCTTGGAAGTTT+AGG | + | chr4.4:31837098-31837117 | MS.gene006634:CDS | 35.0% | |
AGAGAATACAAATGTGACTG+TGG | + | chr4.4:31835632-31835651 | MS.gene006634:CDS | 35.0% | |
AGATGTTGTTCCCATTATGT+TGG | - | chr4.4:31836550-31836569 | None:intergenic | 35.0% | |
AGATTCTTGTGTGAAACATG+TGG | + | chr4.4:31835326-31835345 | MS.gene006634:CDS | 35.0% | |
CAAACTAGAATTTCCATTGG+TGG | - | chr4.4:31836739-31836758 | None:intergenic | 35.0% | |
CAGAATAACATAGAGATGGA+TGG | - | chr4.4:31835694-31835713 | None:intergenic | 35.0% | |
GAAGGAACAACCAAAAGATT+TGG | - | chr4.4:31836321-31836340 | None:intergenic | 35.0% | |
GAATCAACCAATCAAACTAG+AGG | + | chr4.4:31836654-31836673 | MS.gene006634:CDS | 35.0% | |
GAGCTAGACAAAAGTCAAAA+TGG | - | chr4.4:31836183-31836202 | None:intergenic | 35.0% | |
GATTCTTGTGTGAAACATGT+GGG | + | chr4.4:31835327-31835346 | MS.gene006634:CDS | 35.0% | |
GTGGTTATCATTGTTTCATG+AGG | - | chr4.4:31836717-31836736 | None:intergenic | 35.0% | |
TAACATAGAGATGGATGGAT+AGG | - | chr4.4:31835689-31835708 | None:intergenic | 35.0% | |
TCAAGTGATACTTCATTCCT+TGG | + | chr4.4:31837089-31837108 | MS.gene006634:CDS | 35.0% | |
TCATTATTAAGGGGCAACAT+TGG | + | chr4.4:31836516-31836535 | MS.gene006634:CDS | 35.0% | |
TCTGATCACATCGTTGTAAT+CGG | + | chr4.4:31835710-31835729 | MS.gene006634:intron | 35.0% | |
TGATGATCAGGAGTTGAAAT+TGG | - | chr4.4:31836621-31836640 | None:intergenic | 35.0% | |
TTAAGACCAGAGTTCAAATG+CGG | - | chr4.4:31836284-31836303 | None:intergenic | 35.0% | |
TTAGGGCAAAAACAGCAAAA+AGG | - | chr4.4:31835991-31836010 | None:intergenic | 35.0% | |
TTTGCTGAAGATGTTAGATG+TGG | - | chr4.4:31837020-31837039 | None:intergenic | 35.0% | |
! | AAGCACTTTTGTAGAAAGCA+TGG | + | chr4.4:31835524-31835543 | MS.gene006634:CDS | 35.0% |
! | AAGGAATGAAGTATCACTTG+AGG | - | chr4.4:31837090-31837109 | None:intergenic | 35.0% |
! | ACTGTGGAACTATCTTTTCA+AGG | + | chr4.4:31835648-31835667 | MS.gene006634:CDS | 35.0% |
! | GGGTTGGCATATTGTTATTA+GGG | - | chr4.4:31836578-31836597 | None:intergenic | 35.0% |
! | TGATGATGATGATGATGATC+AGG | - | chr4.4:31836633-31836652 | None:intergenic | 35.0% |
!! | TGGGTTGGCATATTGTTATT+AGG | - | chr4.4:31836579-31836598 | None:intergenic | 35.0% |
!!! | GTGAATATTTTTGGTTGAGC+AGG | + | chr4.4:31836403-31836422 | MS.gene006634:intron | 35.0% |
AAACTAGAGGACTATCCCTT+TGG | + | chr4.4:31836667-31836686 | MS.gene006634:CDS | 40.0% | |
AATCTACAGCTACATAGACG+TGG | + | chr4.4:31835371-31835390 | MS.gene006634:CDS | 40.0% | |
ACAATGATAACCACCACCAA+TGG | + | chr4.4:31836723-31836742 | MS.gene006634:CDS | 40.0% | |
ACTACAACTTCACTTCCACT+AGG | + | chr4.4:31836909-31836928 | MS.gene006634:CDS | 40.0% | |
ACTAGAATTTCCATTGGTGG+TGG | - | chr4.4:31836736-31836755 | None:intergenic | 40.0% | |
AGTAACCGGAAACATGAGTA+CGG | - | chr4.4:31836159-31836178 | None:intergenic | 40.0% | |
CTTAGCAGAAGAAACAGCAA+GGG | + | chr4.4:31836464-31836483 | MS.gene006634:CDS | 40.0% | |
GATTGATGAAGGGTGACAAA+TGG | - | chr4.4:31837348-31837367 | None:intergenic | 40.0% | |
GCACATGTCTACGTTTAGAA+GGG | - | chr4.4:31837265-31837284 | None:intergenic | 40.0% | |
GTTATGCTGTTCAGTCAGAT+TGG | + | chr4.4:31835582-31835601 | MS.gene006634:CDS | 40.0% | |
TAAGACCAGAGTTCAAATGC+GGG | - | chr4.4:31836283-31836302 | None:intergenic | 40.0% | |
TAGAGATGGATGGATAGGTT+AGG | - | chr4.4:31835684-31835703 | None:intergenic | 40.0% | |
TCTAAACGTAGACATGTGCA+AGG | + | chr4.4:31837266-31837285 | MS.gene006634:CDS | 40.0% | |
TGCACATGTCTACGTTTAGA+AGG | - | chr4.4:31837266-31837285 | None:intergenic | 40.0% | |
TGTCACCCTTCATCAATCAA+CGG | + | chr4.4:31837350-31837369 | MS.gene006634:CDS | 40.0% | |
TTATGCCGTACTCATGTTTC+CGG | + | chr4.4:31836151-31836170 | MS.gene006634:intron | 40.0% | |
TTGTGTGAAACATGTGGGAA+AGG | + | chr4.4:31835332-31835351 | MS.gene006634:CDS | 40.0% | |
! | ATCCAACCGTTGATTGATGA+AGG | - | chr4.4:31837359-31837378 | None:intergenic | 40.0% |
! | GAAAGCATGGTGAAAAGAAG+TGG | + | chr4.4:31835537-31835556 | MS.gene006634:CDS | 40.0% |
! | GGATAGTCCTCTAGTTTGAT+TGG | - | chr4.4:31836664-31836683 | None:intergenic | 40.0% |
! | GTTGCTCGAGAAATTAGTCT+CGG | + | chr4.4:31835755-31835774 | MS.gene006634:intron | 40.0% |
! | TCCAACCGTTGATTGATGAA+GGG | - | chr4.4:31837358-31837377 | None:intergenic | 40.0% |
! | TTCTGCTAAGGCATCACAAA+AGG | - | chr4.4:31836454-31836473 | None:intergenic | 40.0% |
!! | ACCATGAACTTGTGTCGTTT+AGG | - | chr4.4:31836009-31836028 | None:intergenic | 40.0% |
!! | ACTAGGGATTTTCTTGGTGT+TGG | + | chr4.4:31837314-31837333 | MS.gene006634:CDS | 40.0% |
!! | ACTCATTAGTCTTGGCAATG+AGG | + | chr4.4:31837202-31837221 | MS.gene006634:CDS | 40.0% |
!! | CCATGAACTTGTGTCGTTTA+GGG | - | chr4.4:31836008-31836027 | None:intergenic | 40.0% |
!! | TTGGTGTTGTGAGCTATACA+AGG | - | chr4.4:31836994-31837013 | None:intergenic | 40.0% |
!! | TTTGGTGGTACTGGTATGTA+TGG | + | chr4.4:31837164-31837183 | MS.gene006634:CDS | 40.0% |
AACTGTCTCGTTCTCGAGAA+TGG | + | chr4.4:31836217-31836236 | MS.gene006634:intron | 45.0% | |
AAGACCAGAGTTCAAATGCG+GGG | - | chr4.4:31836282-31836301 | None:intergenic | 45.0% | |
ACCCTTCATCAATCAACGGT+TGG | + | chr4.4:31837354-31837373 | MS.gene006634:CDS | 45.0% | |
CATGTGCAAGGTGAAGAGAA+TGG | + | chr4.4:31837278-31837297 | MS.gene006634:CDS | 45.0% | |
CCCTAAACGACACAAGTTCA+TGG | + | chr4.4:31836005-31836024 | MS.gene006634:intron | 45.0% | |
CCTTAGCAGAAGAAACAGCA+AGG | + | chr4.4:31836463-31836482 | MS.gene006634:CDS | 45.0% | |
GACGTGGACATAATCTTCCA+TGG | + | chr4.4:31835387-31835406 | MS.gene006634:CDS | 45.0% | |
GGAAACATGAGTACGGCATA+AGG | - | chr4.4:31836152-31836171 | None:intergenic | 45.0% | |
TGTCCACCATGATCCTTCAA+GGG | + | chr4.4:31835475-31835494 | MS.gene006634:CDS | 45.0% | |
TTAGTCTCGGCAGTTGTTTG+CGG | + | chr4.4:31835768-31835787 | MS.gene006634:intron | 45.0% | |
! | GGGCAAACTAGGGATTTTCT+TGG | + | chr4.4:31837308-31837327 | MS.gene006634:CDS | 45.0% |
! | GTGAACAAGTTTGGTGGTAC+TGG | + | chr4.4:31837155-31837174 | MS.gene006634:CDS | 45.0% |
!! | CCTTGCTGTTTCTTCTGCTA+AGG | - | chr4.4:31836466-31836485 | None:intergenic | 45.0% |
!! | TGGTGGACACAAGTTTTCTC+TGG | - | chr4.4:31835464-31835483 | None:intergenic | 45.0% |
AAGTCACCAAGTGCCCTTGA+AGG | - | chr4.4:31835491-31835510 | None:intergenic | 50.0% | |
CAAGGTGAAGAGAATGGAGG+AGG | + | chr4.4:31837284-31837303 | MS.gene006634:CDS | 50.0% | |
CAAGTGCCCTTGAAGGATCA+TGG | - | chr4.4:31835484-31835503 | None:intergenic | 50.0% | |
GCTCTCTGCTTAAGCTTCCA+TGG | - | chr4.4:31835407-31835426 | None:intergenic | 50.0% | |
GTGAAGAGAATGGAGGAGGA+GGG | + | chr4.4:31837288-31837307 | MS.gene006634:CDS | 50.0% | |
GTGCAAGGTGAAGAGAATGG+AGG | + | chr4.4:31837281-31837300 | MS.gene006634:CDS | 50.0% | |
GTGTCCACCATGATCCTTCA+AGG | + | chr4.4:31835474-31835493 | MS.gene006634:CDS | 50.0% | |
! | AGGGCACTTGGTGACTTAAC+TGG | + | chr4.4:31835494-31835513 | MS.gene006634:CDS | 50.0% |
! | GGGCACTTGGTGACTTAACT+GGG | + | chr4.4:31835495-31835514 | MS.gene006634:CDS | 50.0% |
!! | CATGATCCTTCAAGGGCACT+TGG | + | chr4.4:31835482-31835501 | MS.gene006634:CDS | 50.0% |
ATGGAGGAGGAGGGCAAACT+AGG | + | chr4.4:31837297-31837316 | MS.gene006634:CDS | 55.0% | |
CGTTCCCCGCATTTGAACTC+TGG | + | chr4.4:31836275-31836294 | MS.gene006634:intron | 55.0% | |
GGTGAAGAGAATGGAGGAGG+AGG | + | chr4.4:31837287-31837306 | MS.gene006634:CDS | 55.0% | |
GTGCCCTTGAAGGATCATGG+TGG | - | chr4.4:31835481-31835500 | None:intergenic | 55.0% | |
TGGAGGAGGAGGGCAAACTA+GGG | + | chr4.4:31837298-31837317 | MS.gene006634:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 31835314 | 31837382 | 31835314 | ID=MS.gene006634 |
chr4.4 | mRNA | 31835314 | 31837382 | 31835314 | ID=MS.gene006634.t1;Parent=MS.gene006634 |
chr4.4 | exon | 31835314 | 31835669 | 31835314 | ID=MS.gene006634.t1.exon1;Parent=MS.gene006634.t1 |
chr4.4 | CDS | 31835314 | 31835669 | 31835314 | ID=cds.MS.gene006634.t1;Parent=MS.gene006634.t1 |
chr4.4 | exon | 31836425 | 31837382 | 31836425 | ID=MS.gene006634.t1.exon2;Parent=MS.gene006634.t1 |
chr4.4 | CDS | 31836425 | 31837382 | 31836425 | ID=cds.MS.gene006634.t1;Parent=MS.gene006634.t1 |
Gene Sequence |
Protein sequence |