AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006634


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006634.t1 MTR_2g090745 63.279 433 99 18 1 423 31 413 3.38e-157 451
MS.gene006634.t1 MTR_2g099990 87.857 140 17 0 1 140 1 140 2.18e-93 287
MS.gene006634.t1 MTR_2g099990 87.857 140 17 0 1 140 70 209 2.51e-93 290
MS.gene006634.t1 MTR_4g059870 41.379 464 164 16 1 423 62 458 6.42e-93 289
MS.gene006634.t1 MTR_8g017210 88.571 140 16 0 1 140 86 225 8.27e-93 290
MS.gene006634.t1 MTR_1g094115 86.232 138 19 0 1 138 71 208 3.07e-90 284
MS.gene006634.t1 MTR_1g112270 57.959 245 82 6 1 237 68 299 2.62e-89 282
MS.gene006634.t1 MTR_1g112270 57.959 245 82 6 1 237 79 310 2.98e-89 282
MS.gene006634.t1 MTR_1g016010 80.667 150 28 1 1 149 65 214 3.57e-88 276
MS.gene006634.t1 MTR_1g094115 85.075 134 20 0 5 138 58 191 7.25e-87 275
MS.gene006634.t1 MTR_2g093960 68.208 173 45 2 1 172 56 219 4.21e-85 266
MS.gene006634.t1 MTR_2g017720 81.188 101 14 1 1 101 337 432 3.10e-50 176
MS.gene006634.t1 MTR_3g102000 80.233 86 14 1 13 98 49 131 1.08e-41 147
MS.gene006634.t1 MTR_1g093095 33.557 149 86 5 1 137 110 257 8.68e-17 80.9
MS.gene006634.t1 MTR_5g030560 83.871 31 5 0 1 31 30 60 7.78e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006634.t1 AT1G03840 50.837 478 158 13 1 437 63 504 1.70e-134 396
MS.gene006634.t1 AT1G03840 50.837 478 158 13 1 437 65 506 1.89e-134 396
MS.gene006634.t1 AT5G44160 49.893 469 140 15 1 437 22 427 9.58e-130 381
MS.gene006634.t1 AT5G44160 49.893 469 140 15 1 437 61 466 1.04e-129 383
MS.gene006634.t1 AT2G02080 43.736 439 191 10 1 423 1 399 1.40e-95 294
MS.gene006634.t1 AT2G02080 43.736 439 191 10 1 423 1 399 1.40e-95 294
MS.gene006634.t1 AT2G02080 43.736 439 191 10 1 423 78 476 5.38e-95 295
MS.gene006634.t1 AT2G02080 43.736 439 191 10 1 423 78 476 5.38e-95 295
MS.gene006634.t1 AT2G02080 43.736 439 191 10 1 423 78 476 5.38e-95 295
MS.gene006634.t1 AT2G02080 43.736 439 191 10 1 423 78 476 5.38e-95 295
MS.gene006634.t1 AT3G50700 87.770 139 17 0 1 139 58 196 5.77e-94 291
MS.gene006634.t1 AT5G66730 87.050 139 18 0 1 139 56 194 1.20e-92 289
MS.gene006634.t1 AT5G03150 66.204 216 54 5 1 205 77 284 7.03e-92 287
MS.gene006634.t1 AT3G13810 88.571 140 15 1 1 139 75 214 7.47e-90 281
MS.gene006634.t1 AT3G13810 88.571 140 15 1 1 139 89 228 7.78e-90 282
MS.gene006634.t1 AT3G13810 88.571 140 15 1 1 139 94 233 9.00e-90 282
MS.gene006634.t1 AT3G13810 88.571 140 15 1 1 139 94 233 9.00e-90 282
MS.gene006634.t1 AT3G45260 76.687 163 33 2 1 158 63 225 9.77e-90 280
MS.gene006634.t1 AT3G45260 76.687 163 33 2 1 158 63 225 9.77e-90 280
MS.gene006634.t1 AT1G14580 84.173 139 22 0 1 139 77 215 9.85e-90 280
MS.gene006634.t1 AT1G14580 84.173 139 22 0 1 139 77 215 9.85e-90 280
MS.gene006634.t1 AT3G13810 88.571 140 15 1 1 139 81 220 1.01e-89 281
MS.gene006634.t1 AT3G13810 88.571 140 15 1 1 139 95 234 1.25e-89 281
MS.gene006634.t1 AT1G14580 84.173 139 22 0 1 139 91 229 1.64e-89 280
MS.gene006634.t1 AT2G02070 84.892 139 21 0 1 139 76 214 1.84e-89 283
MS.gene006634.t1 AT2G02070 84.892 139 21 0 1 139 76 214 1.84e-89 283
MS.gene006634.t1 AT1G55110 85.816 141 19 1 1 140 87 227 5.94e-89 278
MS.gene006634.t1 AT1G55110 85.816 141 19 1 1 140 87 227 5.94e-89 278
MS.gene006634.t1 AT1G55110 85.816 141 19 1 1 140 87 227 5.94e-89 278
MS.gene006634.t1 AT4G02670 80.405 148 28 1 1 147 79 226 2.26e-86 270
MS.gene006634.t1 AT4G02670 80.405 148 28 1 1 147 77 224 2.56e-86 269
MS.gene006634.t1 AT2G01940 64.925 134 45 2 1 132 68 201 6.38e-58 197
MS.gene006634.t1 AT1G68130 64.394 132 45 2 1 130 65 196 2.00e-57 195
MS.gene006634.t1 AT1G25250 63.910 133 45 2 1 130 34 166 2.17e-57 193
MS.gene006634.t1 AT1G25250 63.910 133 45 2 1 130 57 189 2.68e-57 193
MS.gene006634.t1 AT2G01940 63.704 135 46 3 1 132 68 202 4.31e-54 187
MS.gene006634.t1 AT2G01940 66.071 112 36 2 23 132 1 112 2.42e-45 161
MS.gene006634.t1 AT1G68130 65.455 110 36 2 23 130 1 110 3.12e-45 160
MS.gene006634.t1 AT1G25250 64.865 111 36 2 23 130 1 111 9.77e-45 158
MS.gene006634.t1 AT1G34370 31.383 188 102 5 1 161 29 216 6.23e-21 92.8
MS.gene006634.t1 AT5G22890 33.566 143 81 3 1 129 212 354 6.35e-21 94.4
MS.gene006634.t1 AT1G34370 31.383 188 102 5 1 161 239 426 1.03e-20 94.7
MS.gene006634.t1 AT1G34370 31.383 188 102 5 1 161 239 426 1.03e-20 94.7
MS.gene006634.t1 AT1G13290 33.557 149 87 5 1 138 96 243 5.01e-17 81.6
MS.gene006634.t1 AT1G34790 34.615 156 85 5 6 145 145 299 1.18e-16 80.9
MS.gene006634.t1 AT3G20880 34.058 138 81 5 1 129 251 387 2.70e-16 80.9
MS.gene006634.t1 AT3G57670 30.303 165 97 5 1 148 212 375 5.92e-16 79.7
MS.gene006634.t1 AT1G08290 36.296 135 75 5 5 129 179 312 9.34e-16 78.6
MS.gene006634.t1 AT1G51220 31.884 138 84 4 1 129 173 309 1.54e-15 77.8

Find 84 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATAACTATCAGCTAAAT+TGG 0.096349 4.4:+31836835 MS.gene006634:CDS
GTTTGAAAATTGAAGGAAAA+TGG 0.140606 4.4:-31836596 None:intergenic
TGGGTTGGCATATTGTTATT+AGG 0.224791 4.4:-31836576 None:intergenic
TAAACAACAGCTCATTATTA+AGG 0.224931 4.4:+31836505 MS.gene006634:CDS
ACTTCATTCCTTGGAAGTTT+AGG 0.253137 4.4:+31837098 MS.gene006634:CDS
AGGGCACTTGGTGACTTAAC+TGG 0.259047 4.4:+31835494 MS.gene006634:CDS
AGCTGATAGTTATTAGAATA+TGG 0.265620 4.4:-31836828 None:intergenic
TGGTAATTACACCAACATAA+TGG 0.296549 4.4:+31836536 MS.gene006634:CDS
GGGTTGGCATATTGTTATTA+GGG 0.301259 4.4:-31836575 None:intergenic
TAGTACTAGTAATTAATTCT+TGG 0.306930 4.4:-31836890 None:intergenic
AAGATGTTAGATGTGGTATT+TGG 0.334453 4.4:-31837010 None:intergenic
AAACATTAATGTTAATGTTA+AGG 0.353425 4.4:+31836932 MS.gene006634:CDS
TGATGATCAGGAGTTGAAAT+TGG 0.355744 4.4:-31836618 None:intergenic
TGCACATGTCTACGTTTAGA+AGG 0.356777 4.4:-31837263 None:intergenic
GGTAATTACACCAACATAAT+GGG 0.361813 4.4:+31836537 MS.gene006634:CDS
GGATAGTCCTCTAGTTTGAT+TGG 0.388786 4.4:-31836661 None:intergenic
TCAAGTGATACTTCATTCCT+TGG 0.409861 4.4:+31837089 MS.gene006634:CDS
TATACAAGGAAGAAATTTGT+TGG 0.410040 4.4:-31836977 None:intergenic
TAATAACTATCAGCTAAATT+GGG 0.410339 4.4:+31836836 MS.gene006634:CDS
GAAATTGGTTTGAAAATTGA+AGG 0.411531 4.4:-31836603 None:intergenic
AAACAACAGCTCATTATTAA+GGG 0.419315 4.4:+31836506 MS.gene006634:CDS
CCTTGCTGTTTCTTCTGCTA+AGG 0.425077 4.4:-31836463 None:intergenic
ATGGAGGAGGAGGGCAAACT+AGG 0.425755 4.4:+31837297 MS.gene006634:CDS
TTTGAAAATTGAAGGAAAAT+GGG 0.430601 4.4:-31836595 None:intergenic
GTGTCCACCATGATCCTTCA+AGG 0.447211 4.4:+31835474 MS.gene006634:CDS
AAACTAGAGGACTATCCCTT+TGG 0.451953 4.4:+31836667 MS.gene006634:CDS
ACTAATGATGTGAACAAGTT+TGG 0.457937 4.4:+31837146 MS.gene006634:CDS
GTTATGCTGTTCAGTCAGAT+TGG 0.460465 4.4:+31835582 MS.gene006634:CDS
GTGAACAAGTTTGGTGGTAC+TGG 0.464971 4.4:+31837155 MS.gene006634:CDS
TTCTGCTAAGGCATCACAAA+AGG 0.465130 4.4:-31836451 None:intergenic
GCTCTCTGCTTAAGCTTCCA+TGG 0.471864 4.4:-31835404 None:intergenic
AAAATTGAAGGAAAATGGGT+TGG 0.476598 4.4:-31836591 None:intergenic
ATCCAACCGTTGATTGATGA+AGG 0.480114 4.4:-31837356 None:intergenic
AAGTCACCAAGTGCCCTTGA+AGG 0.485801 4.4:-31835488 None:intergenic
CAAGGTGAAGAGAATGGAGG+AGG 0.488030 4.4:+31837284 MS.gene006634:CDS
GGTGAAGAGAATGGAGGAGG+AGG 0.498727 4.4:+31837287 MS.gene006634:CDS
AGTTCATTACTCATTAGTCT+TGG 0.500073 4.4:+31837194 MS.gene006634:CDS
TTTGGTGGTACTGGTATGTA+TGG 0.508130 4.4:+31837164 MS.gene006634:CDS
CAAACTAGAATTTCCATTGG+TGG 0.513839 4.4:-31836736 None:intergenic
CATGATCCTTCAAGGGCACT+TGG 0.515364 4.4:+31835482 MS.gene006634:CDS
ACCCTTCATCAATCAACGGT+TGG 0.521243 4.4:+31837354 MS.gene006634:CDS
ACTAGAATTTCCATTGGTGG+TGG 0.523314 4.4:-31836733 None:intergenic
GGGCACTTGGTGACTTAACT+GGG 0.533578 4.4:+31835495 MS.gene006634:CDS
GAAAGCATGGTGAAAAGAAG+TGG 0.534661 4.4:+31835537 MS.gene006634:CDS
TCATCAAGAGAAATTATGTA+TGG 0.535107 4.4:+31836786 MS.gene006634:CDS
AGATGTTGTTCCCATTATGT+TGG 0.540728 4.4:-31836547 None:intergenic
CAAGTGCCCTTGAAGGATCA+TGG 0.541455 4.4:-31835481 None:intergenic
TGGAGGAGGAGGGCAAACTA+GGG 0.541684 4.4:+31837298 MS.gene006634:CDS
GATTGATGAAGGGTGACAAA+TGG 0.546230 4.4:-31837345 None:intergenic
ACAATGATAACCACCACCAA+TGG 0.547801 4.4:+31836723 MS.gene006634:CDS
TAGTTATTAGAATATGGTGG+AGG 0.547810 4.4:-31836822 None:intergenic
GTGGTTATCATTGTTTCATG+AGG 0.548154 4.4:-31836714 None:intergenic
ACTCATTAGTCTTGGCAATG+AGG 0.548463 4.4:+31837202 MS.gene006634:CDS
ATGCAAACTAGAATTTCCAT+TGG 0.550334 4.4:-31836739 None:intergenic
ATTTCAAACCTAAACTTCCA+AGG 0.550495 4.4:-31837106 None:intergenic
TCATTATTAAGGGGCAACAT+TGG 0.553366 4.4:+31836516 MS.gene006634:CDS
TCAAGAGAAATTATGTATGG+TGG 0.557028 4.4:+31836789 MS.gene006634:CDS
TTGTGTGAAACATGTGGGAA+AGG 0.560203 4.4:+31835332 MS.gene006634:CDS
TTGGTGTTGTGAGCTATACA+AGG 0.564753 4.4:-31836991 None:intergenic
GACGTGGACATAATCTTCCA+TGG 0.576178 4.4:+31835387 MS.gene006634:CDS
GCACATGTCTACGTTTAGAA+GGG 0.592522 4.4:-31837262 None:intergenic
TGTCACCCTTCATCAATCAA+CGG 0.597702 4.4:+31837350 MS.gene006634:CDS
CATGTGCAAGGTGAAGAGAA+TGG 0.598271 4.4:+31837278 MS.gene006634:CDS
AGTTATTAGAATATGGTGGA+GGG 0.602415 4.4:-31836821 None:intergenic
GTGAAGAGAATGGAGGAGGA+GGG 0.608002 4.4:+31837288 MS.gene006634:CDS
AACAACAGCTCATTATTAAG+GGG 0.612489 4.4:+31836507 MS.gene006634:CDS
AAGGAATGAAGTATCACTTG+AGG 0.616790 4.4:-31837087 None:intergenic
TTAACATTAATGTTTCCTAG+TGG 0.620526 4.4:-31836924 None:intergenic
AATGATGTGAACAAGTTTGG+TGG 0.623059 4.4:+31837149 MS.gene006634:CDS
TCCAACCGTTGATTGATGAA+GGG 0.630023 4.4:-31837355 None:intergenic
TGTCCACCATGATCCTTCAA+GGG 0.631692 4.4:+31835475 MS.gene006634:CDS
GAATCAACCAATCAAACTAG+AGG 0.641739 4.4:+31836654 MS.gene006634:CDS
TGATAGTTATTAGAATATGG+TGG 0.647387 4.4:-31836825 None:intergenic
CCTTAGCAGAAGAAACAGCA+AGG 0.647661 4.4:+31836463 MS.gene006634:CDS
ACTACAACTTCACTTCCACT+AGG 0.649669 4.4:+31836909 MS.gene006634:CDS
GATTCTTGTGTGAAACATGT+GGG 0.660378 4.4:+31835327 MS.gene006634:CDS
AGATTCTTGTGTGAAACATG+TGG 0.668573 4.4:+31835326 MS.gene006634:CDS
AGAGAATACAAATGTGACTG+TGG 0.675625 4.4:+31835632 MS.gene006634:CDS
TCTAAACGTAGACATGTGCA+AGG 0.685474 4.4:+31837266 MS.gene006634:CDS
CTTAGCAGAAGAAACAGCAA+GGG 0.690135 4.4:+31836464 MS.gene006634:CDS
AATCTACAGCTACATAGACG+TGG 0.700320 4.4:+31835371 MS.gene006634:CDS
TTTGCTGAAGATGTTAGATG+TGG 0.702326 4.4:-31837017 None:intergenic
GTGCAAGGTGAAGAGAATGG+AGG 0.708411 4.4:+31837281 MS.gene006634:CDS
GTGCCCTTGAAGGATCATGG+TGG 0.739339 4.4:-31835478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATATATCTGATATA+AGG + chr4.4:31835812-31835831 MS.gene006634:intron 10.0%
!! GTTTATATATAAATATTAGA+AGG - chr4.4:31836339-31836358 None:intergenic 10.0%
!!! ATCAGATATATAATTTTTTT+TGG - chr4.4:31835809-31835828 None:intergenic 10.0%
!!! TTAATATTTGTGAATATTTT+TGG + chr4.4:31836394-31836413 MS.gene006634:intron 10.0%
!! AAACATTAATGTTAATGTTA+AGG + chr4.4:31836932-31836951 MS.gene006634:CDS 15.0%
!! TTAGTTTAAACAAATGATTA+AGG + chr4.4:31835925-31835944 MS.gene006634:intron 15.0%
!! TAATAACTATCAGCTAAATT+GGG + chr4.4:31836836-31836855 MS.gene006634:CDS 20.0%
!! TAGTACTAGTAATTAATTCT+TGG - chr4.4:31836893-31836912 None:intergenic 20.0%
!! TTTGAAAATTGAAGGAAAAT+GGG - chr4.4:31836598-31836617 None:intergenic 20.0%
!!! ATGTTTTTTTTTTGCCTATT+TGG + chr4.4:31835870-31835889 MS.gene006634:intron 20.0%
! AAACAACAGCTCATTATTAA+GGG + chr4.4:31836506-31836525 MS.gene006634:CDS 25.0%
! AATTATATACATAGTGAGTG+AGG - chr4.4:31836051-31836070 None:intergenic 25.0%
! AGCTGATAGTTATTAGAATA+TGG - chr4.4:31836831-31836850 None:intergenic 25.0%
! ATAAGGATCAAGTTTAAAAG+TGG + chr4.4:31835829-31835848 MS.gene006634:intron 25.0%
! CTAATAACTATCAGCTAAAT+TGG + chr4.4:31836835-31836854 MS.gene006634:CDS 25.0%
! GTTAACCAACTACTATATAT+AGG + chr4.4:31836111-31836130 MS.gene006634:intron 25.0%
! GTTTGAAAATTGAAGGAAAA+TGG - chr4.4:31836599-31836618 None:intergenic 25.0%
! TAAACAACAGCTCATTATTA+AGG + chr4.4:31836505-31836524 MS.gene006634:CDS 25.0%
! TAATCGGTATATCTGATATA+AGG + chr4.4:31835726-31835745 MS.gene006634:intron 25.0%
! TATACAAGGAAGAAATTTGT+TGG - chr4.4:31836980-31836999 None:intergenic 25.0%
! TATTCTCAAAAAAGCCAAAT+AGG - chr4.4:31835887-31835906 None:intergenic 25.0%
! TCATCAAGAGAAATTATGTA+TGG + chr4.4:31836786-31836805 MS.gene006634:CDS 25.0%
! TGATAGTTATTAGAATATGG+TGG - chr4.4:31836828-31836847 None:intergenic 25.0%
! TTAACATTAATGTTTCCTAG+TGG - chr4.4:31836927-31836946 None:intergenic 25.0%
! TTGAGAATAAAAAGTGAATG+AGG + chr4.4:31835898-31835917 MS.gene006634:intron 25.0%
!! AACTCATTAACCAAATCTTT+TGG + chr4.4:31836308-31836327 MS.gene006634:intron 25.0%
!!! AGAATTTTGATTCATCCAAA+GGG - chr4.4:31836685-31836704 None:intergenic 25.0%
!!! GAAATTGGTTTGAAAATTGA+AGG - chr4.4:31836606-31836625 None:intergenic 25.0%
!!! TTTATTTTCACACTAGTTTG+AGG + chr4.4:31836086-31836105 MS.gene006634:intron 25.0%
AAAATTGAAGGAAAATGGGT+TGG - chr4.4:31836594-31836613 None:intergenic 30.0%
AACAACAGCTCATTATTAAG+GGG + chr4.4:31836507-31836526 MS.gene006634:CDS 30.0%
AAGATGTTAGATGTGGTATT+TGG - chr4.4:31837013-31837032 None:intergenic 30.0%
ACAAGCCTATATATAGTAGT+TGG - chr4.4:31836119-31836138 None:intergenic 30.0%
ACTAATGATGTGAACAAGTT+TGG + chr4.4:31837146-31837165 MS.gene006634:CDS 30.0%
AGCTAGACAAAAGTCAAAAT+GGG - chr4.4:31836182-31836201 None:intergenic 30.0%
ATGCAAACTAGAATTTCCAT+TGG - chr4.4:31836742-31836761 None:intergenic 30.0%
ATTTCAAACCTAAACTTCCA+AGG - chr4.4:31837109-31837128 None:intergenic 30.0%
GATCAAGTTTAAAAGTGGTT+AGG + chr4.4:31835834-31835853 MS.gene006634:intron 30.0%
GGTAATTACACCAACATAAT+GGG + chr4.4:31836537-31836556 MS.gene006634:CDS 30.0%
TAGTTATTAGAATATGGTGG+AGG - chr4.4:31836825-31836844 None:intergenic 30.0%
TCAAGAGAAATTATGTATGG+TGG + chr4.4:31836789-31836808 MS.gene006634:CDS 30.0%
TGATCAGAATAACATAGAGA+TGG - chr4.4:31835698-31835717 None:intergenic 30.0%
TGGTAATTACACCAACATAA+TGG + chr4.4:31836536-31836555 MS.gene006634:CDS 30.0%
TTACAAAAAGCTGCTCAAAT+TGG + chr4.4:31837059-31837078 MS.gene006634:CDS 30.0%
! AGTTATTAGAATATGGTGGA+GGG - chr4.4:31836824-31836843 None:intergenic 30.0%
! AGTTCATTACTCATTAGTCT+TGG + chr4.4:31837194-31837213 MS.gene006634:CDS 30.0%
! TATCAGCTAAATTGGGTTTT+TGG + chr4.4:31836843-31836862 MS.gene006634:CDS 30.0%
!!! GAGAATTTTGATTCATCCAA+AGG - chr4.4:31836686-31836705 None:intergenic 30.0%
AAAGCTCACTCAAAAACATG+TGG + chr4.4:31835605-31835624 MS.gene006634:CDS 35.0%
AAAGTCAAAATGGGAGTAAC+CGG - chr4.4:31836173-31836192 None:intergenic 35.0%
AATGATGTGAACAAGTTTGG+TGG + chr4.4:31837149-31837168 MS.gene006634:CDS 35.0%
ACTTCATTCCTTGGAAGTTT+AGG + chr4.4:31837098-31837117 MS.gene006634:CDS 35.0%
AGAGAATACAAATGTGACTG+TGG + chr4.4:31835632-31835651 MS.gene006634:CDS 35.0%
AGATGTTGTTCCCATTATGT+TGG - chr4.4:31836550-31836569 None:intergenic 35.0%
AGATTCTTGTGTGAAACATG+TGG + chr4.4:31835326-31835345 MS.gene006634:CDS 35.0%
CAAACTAGAATTTCCATTGG+TGG - chr4.4:31836739-31836758 None:intergenic 35.0%
CAGAATAACATAGAGATGGA+TGG - chr4.4:31835694-31835713 None:intergenic 35.0%
GAAGGAACAACCAAAAGATT+TGG - chr4.4:31836321-31836340 None:intergenic 35.0%
GAATCAACCAATCAAACTAG+AGG + chr4.4:31836654-31836673 MS.gene006634:CDS 35.0%
GAGCTAGACAAAAGTCAAAA+TGG - chr4.4:31836183-31836202 None:intergenic 35.0%
GATTCTTGTGTGAAACATGT+GGG + chr4.4:31835327-31835346 MS.gene006634:CDS 35.0%
GTGGTTATCATTGTTTCATG+AGG - chr4.4:31836717-31836736 None:intergenic 35.0%
TAACATAGAGATGGATGGAT+AGG - chr4.4:31835689-31835708 None:intergenic 35.0%
TCAAGTGATACTTCATTCCT+TGG + chr4.4:31837089-31837108 MS.gene006634:CDS 35.0%
TCATTATTAAGGGGCAACAT+TGG + chr4.4:31836516-31836535 MS.gene006634:CDS 35.0%
TCTGATCACATCGTTGTAAT+CGG + chr4.4:31835710-31835729 MS.gene006634:intron 35.0%
TGATGATCAGGAGTTGAAAT+TGG - chr4.4:31836621-31836640 None:intergenic 35.0%
TTAAGACCAGAGTTCAAATG+CGG - chr4.4:31836284-31836303 None:intergenic 35.0%
TTAGGGCAAAAACAGCAAAA+AGG - chr4.4:31835991-31836010 None:intergenic 35.0%
TTTGCTGAAGATGTTAGATG+TGG - chr4.4:31837020-31837039 None:intergenic 35.0%
! AAGCACTTTTGTAGAAAGCA+TGG + chr4.4:31835524-31835543 MS.gene006634:CDS 35.0%
! AAGGAATGAAGTATCACTTG+AGG - chr4.4:31837090-31837109 None:intergenic 35.0%
! ACTGTGGAACTATCTTTTCA+AGG + chr4.4:31835648-31835667 MS.gene006634:CDS 35.0%
! GGGTTGGCATATTGTTATTA+GGG - chr4.4:31836578-31836597 None:intergenic 35.0%
! TGATGATGATGATGATGATC+AGG - chr4.4:31836633-31836652 None:intergenic 35.0%
!! TGGGTTGGCATATTGTTATT+AGG - chr4.4:31836579-31836598 None:intergenic 35.0%
!!! GTGAATATTTTTGGTTGAGC+AGG + chr4.4:31836403-31836422 MS.gene006634:intron 35.0%
AAACTAGAGGACTATCCCTT+TGG + chr4.4:31836667-31836686 MS.gene006634:CDS 40.0%
AATCTACAGCTACATAGACG+TGG + chr4.4:31835371-31835390 MS.gene006634:CDS 40.0%
ACAATGATAACCACCACCAA+TGG + chr4.4:31836723-31836742 MS.gene006634:CDS 40.0%
ACTACAACTTCACTTCCACT+AGG + chr4.4:31836909-31836928 MS.gene006634:CDS 40.0%
ACTAGAATTTCCATTGGTGG+TGG - chr4.4:31836736-31836755 None:intergenic 40.0%
AGTAACCGGAAACATGAGTA+CGG - chr4.4:31836159-31836178 None:intergenic 40.0%
CTTAGCAGAAGAAACAGCAA+GGG + chr4.4:31836464-31836483 MS.gene006634:CDS 40.0%
GATTGATGAAGGGTGACAAA+TGG - chr4.4:31837348-31837367 None:intergenic 40.0%
GCACATGTCTACGTTTAGAA+GGG - chr4.4:31837265-31837284 None:intergenic 40.0%
GTTATGCTGTTCAGTCAGAT+TGG + chr4.4:31835582-31835601 MS.gene006634:CDS 40.0%
TAAGACCAGAGTTCAAATGC+GGG - chr4.4:31836283-31836302 None:intergenic 40.0%
TAGAGATGGATGGATAGGTT+AGG - chr4.4:31835684-31835703 None:intergenic 40.0%
TCTAAACGTAGACATGTGCA+AGG + chr4.4:31837266-31837285 MS.gene006634:CDS 40.0%
TGCACATGTCTACGTTTAGA+AGG - chr4.4:31837266-31837285 None:intergenic 40.0%
TGTCACCCTTCATCAATCAA+CGG + chr4.4:31837350-31837369 MS.gene006634:CDS 40.0%
TTATGCCGTACTCATGTTTC+CGG + chr4.4:31836151-31836170 MS.gene006634:intron 40.0%
TTGTGTGAAACATGTGGGAA+AGG + chr4.4:31835332-31835351 MS.gene006634:CDS 40.0%
! ATCCAACCGTTGATTGATGA+AGG - chr4.4:31837359-31837378 None:intergenic 40.0%
! GAAAGCATGGTGAAAAGAAG+TGG + chr4.4:31835537-31835556 MS.gene006634:CDS 40.0%
! GGATAGTCCTCTAGTTTGAT+TGG - chr4.4:31836664-31836683 None:intergenic 40.0%
! GTTGCTCGAGAAATTAGTCT+CGG + chr4.4:31835755-31835774 MS.gene006634:intron 40.0%
! TCCAACCGTTGATTGATGAA+GGG - chr4.4:31837358-31837377 None:intergenic 40.0%
! TTCTGCTAAGGCATCACAAA+AGG - chr4.4:31836454-31836473 None:intergenic 40.0%
!! ACCATGAACTTGTGTCGTTT+AGG - chr4.4:31836009-31836028 None:intergenic 40.0%
!! ACTAGGGATTTTCTTGGTGT+TGG + chr4.4:31837314-31837333 MS.gene006634:CDS 40.0%
!! ACTCATTAGTCTTGGCAATG+AGG + chr4.4:31837202-31837221 MS.gene006634:CDS 40.0%
!! CCATGAACTTGTGTCGTTTA+GGG - chr4.4:31836008-31836027 None:intergenic 40.0%
!! TTGGTGTTGTGAGCTATACA+AGG - chr4.4:31836994-31837013 None:intergenic 40.0%
!! TTTGGTGGTACTGGTATGTA+TGG + chr4.4:31837164-31837183 MS.gene006634:CDS 40.0%
AACTGTCTCGTTCTCGAGAA+TGG + chr4.4:31836217-31836236 MS.gene006634:intron 45.0%
AAGACCAGAGTTCAAATGCG+GGG - chr4.4:31836282-31836301 None:intergenic 45.0%
ACCCTTCATCAATCAACGGT+TGG + chr4.4:31837354-31837373 MS.gene006634:CDS 45.0%
CATGTGCAAGGTGAAGAGAA+TGG + chr4.4:31837278-31837297 MS.gene006634:CDS 45.0%
CCCTAAACGACACAAGTTCA+TGG + chr4.4:31836005-31836024 MS.gene006634:intron 45.0%
CCTTAGCAGAAGAAACAGCA+AGG + chr4.4:31836463-31836482 MS.gene006634:CDS 45.0%
GACGTGGACATAATCTTCCA+TGG + chr4.4:31835387-31835406 MS.gene006634:CDS 45.0%
GGAAACATGAGTACGGCATA+AGG - chr4.4:31836152-31836171 None:intergenic 45.0%
TGTCCACCATGATCCTTCAA+GGG + chr4.4:31835475-31835494 MS.gene006634:CDS 45.0%
TTAGTCTCGGCAGTTGTTTG+CGG + chr4.4:31835768-31835787 MS.gene006634:intron 45.0%
! GGGCAAACTAGGGATTTTCT+TGG + chr4.4:31837308-31837327 MS.gene006634:CDS 45.0%
! GTGAACAAGTTTGGTGGTAC+TGG + chr4.4:31837155-31837174 MS.gene006634:CDS 45.0%
!! CCTTGCTGTTTCTTCTGCTA+AGG - chr4.4:31836466-31836485 None:intergenic 45.0%
!! TGGTGGACACAAGTTTTCTC+TGG - chr4.4:31835464-31835483 None:intergenic 45.0%
AAGTCACCAAGTGCCCTTGA+AGG - chr4.4:31835491-31835510 None:intergenic 50.0%
CAAGGTGAAGAGAATGGAGG+AGG + chr4.4:31837284-31837303 MS.gene006634:CDS 50.0%
CAAGTGCCCTTGAAGGATCA+TGG - chr4.4:31835484-31835503 None:intergenic 50.0%
GCTCTCTGCTTAAGCTTCCA+TGG - chr4.4:31835407-31835426 None:intergenic 50.0%
GTGAAGAGAATGGAGGAGGA+GGG + chr4.4:31837288-31837307 MS.gene006634:CDS 50.0%
GTGCAAGGTGAAGAGAATGG+AGG + chr4.4:31837281-31837300 MS.gene006634:CDS 50.0%
GTGTCCACCATGATCCTTCA+AGG + chr4.4:31835474-31835493 MS.gene006634:CDS 50.0%
! AGGGCACTTGGTGACTTAAC+TGG + chr4.4:31835494-31835513 MS.gene006634:CDS 50.0%
! GGGCACTTGGTGACTTAACT+GGG + chr4.4:31835495-31835514 MS.gene006634:CDS 50.0%
!! CATGATCCTTCAAGGGCACT+TGG + chr4.4:31835482-31835501 MS.gene006634:CDS 50.0%
ATGGAGGAGGAGGGCAAACT+AGG + chr4.4:31837297-31837316 MS.gene006634:CDS 55.0%
CGTTCCCCGCATTTGAACTC+TGG + chr4.4:31836275-31836294 MS.gene006634:intron 55.0%
GGTGAAGAGAATGGAGGAGG+AGG + chr4.4:31837287-31837306 MS.gene006634:CDS 55.0%
GTGCCCTTGAAGGATCATGG+TGG - chr4.4:31835481-31835500 None:intergenic 55.0%
TGGAGGAGGAGGGCAAACTA+GGG + chr4.4:31837298-31837317 MS.gene006634:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 31835314 31837382 31835314 ID=MS.gene006634
chr4.4 mRNA 31835314 31837382 31835314 ID=MS.gene006634.t1;Parent=MS.gene006634
chr4.4 exon 31835314 31835669 31835314 ID=MS.gene006634.t1.exon1;Parent=MS.gene006634.t1
chr4.4 CDS 31835314 31835669 31835314 ID=cds.MS.gene006634.t1;Parent=MS.gene006634.t1
chr4.4 exon 31836425 31837382 31836425 ID=MS.gene006634.t1.exon2;Parent=MS.gene006634.t1
chr4.4 CDS 31836425 31837382 31836425 ID=cds.MS.gene006634.t1;Parent=MS.gene006634.t1
Gene Sequence

>MS.gene006634

ATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAGCTACATAGACGTGGACATAATCTTCCATGGAAGCTTAAGCAGAGAGCAAACAAAGAAATAAAGAAGAGAGTTTATGTGTGTCCAGAGAAAACTTGTGTCCACCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGTAACTAACTACCTAACCTATCCATCCATCTCTATGTTATTCTGATCACATCGTTGTAATCGGTATATCTGATATAAGGATCTCAGTTGCTCGAGAAATTAGTCTCGGCAGTTGTTTGCGGAAATATCTAAGTTTACCAAAAAAAATTATATATCTGATATAAGGATCAAGTTTAAAAGTGGTTAGGCAACTTGAATAATATGTTTTTTTTTTGCCTATTTGGCTTTTTTGAGAATAAAAAGTGAATGAGGTTAATTAGTTTAAACAAATGATTAAGGAGTTGATCAAAGATTAATTAAGACACAAGTTTTTGATAAGCCTTTTTGCTGTTTTTGCCCTAAACGACACAAGTTCATGGTTTTGAGTTATCTCATTTAACCTCACTCACTATGTATATAATTGAGTATTATTTTTGTTTTATTTTCACACTAGTTTGAGGTTGTTAACCAACTACTATATATAGGCTTGTTTGTACAAATCCTTATGCCGTACTCATGTTTCCGGTTACTCCCATTTTGACTTTTGTCTAGCTCTAATCTTTTGTCATAACTGTCTCGTTCTCGAGAATGGTTCGACTGAGAGATAAGTAAAGTCTGATAAAATATCGTTCCCCGCATTTGAACTCTGGTCTTAACTGAAACTCATTAACCAAATCTTTTGGTTGTTCCTTCTAATATTTATATATAAACATTTCTCTTTGTTAAAAAAGTTAAATTATTAGTACTTAATATTTGTGAATATTTTTGGTTGAGCAGGAGAGACAGCTTCATAACTCACAGAGCCTTTTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAGTGCAGCATCAGAAATAAACAACAGCTCATTATTAAGGGGCAACATTGGTAATTACACCAACATAATGGGAACAACATCTCTAGTCCCTAATAACAATATGCCAACCCATTTTCCTTCAATTTTCAAACCAATTTCAACTCCTGATCATCATCATCATCATCATGAATCAACCAATCAAACTAGAGGACTATCCCTTTGGATGAATCAAAATTCTCATTCTCAACCTCATGAAACAATGATAACCACCACCAATGGAAATTCTAGTTTGCATGAGATTCATCAACAACTTGACTCATCATCAAGAGAAATTATGTATGGTGGAAATGAGAACCCTCCACCATATTCTAATAACTATCAGCTAAATTGGGTTTTTGGAACTAAACTTTCAAACAATTGCAGCCAAGAATTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATGTTTCTCATGATGCTACAAGCCAACAAATTTCTTCCTTGTATAGCTCACAACACCAAATACCACATCTAACATCTTCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACCTCAAGTGATACTTCATTCCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAGTACTAATGATGTGAACAAGTTTGGTGGTACTGGTATGTATGGTACTTCAAGTTCATTACTCATTAGTCTTGGCAATGAGGAAGATCATAATAATGCATGTGATTTTTCACAAATGCACCCTTCTAAACGTAGACATGTGCAAGGTGAAGAGAATGGAGGAGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCACCCTTCATCAATCAACGGTTGGATTTGA

Protein sequence

>MS.gene006634.t1

MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRANKEIKKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNSSLLRGNIGNYTNIMGTTSLVPNNNMPTHFPSIFKPISTPDHHHHHHESTNQTRGLSLWMNQNSHSQPHETMITTTNGNSSLHEIHQQLDSSSREIMYGGNENPPPYSNNYQLNWVFGTKLSNNCSQELITSTTTSLPLGNINVNVKDVSHDATSQQISSLYSSQHQIPHLTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNSTNDVNKFGGTGMYGTSSSLLISLGNEEDHNNACDFSQMHPSKRRHVQGEENGGGGQTRDFLGVGVQTICHPSSINGWI