Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01961.t1 | XP_003594335.1 | 94.5 | 584 | 21 | 1 | 1 | 584 | 1 | 573 | 0.00E+00 | 1094.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01961.t1 | Q9FIK1 | 55.5 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 3.2e-176 | 619.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01961.t1 | G7IQ44 | 94.5 | 584 | 21 | 1 | 1 | 584 | 1 | 573 | 0.0e+00 | 1094.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01961 | MS.gene86230 | PPI |
| MS.gene01961 | MS.gene29159 | PPI |
| MS.gene01961 | MS.gene027737 | PPI |
| MS.gene44279 | MS.gene01961 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01961.t1 | MTR_2g027410 | 94.521 | 584 | 21 | 1 | 1 | 584 | 1 | 573 | 0.0 | 1138 |
| MS.gene01961.t1 | MTR_2g027410 | 93.945 | 512 | 20 | 1 | 73 | 584 | 1 | 501 | 0.0 | 972 |
| MS.gene01961.t1 | MTR_4g134210 | 67.822 | 606 | 165 | 7 | 1 | 582 | 1 | 600 | 0.0 | 833 |
| MS.gene01961.t1 | MTR_5g032780 | 44.796 | 538 | 242 | 8 | 1 | 483 | 1 | 538 | 2.50e-146 | 437 |
| MS.gene01961.t1 | MTR_8g069330 | 45.842 | 493 | 230 | 7 | 1 | 465 | 1 | 484 | 2.79e-135 | 407 |
| MS.gene01961.t1 | MTR_1g014070 | 38.540 | 493 | 266 | 7 | 1 | 463 | 1 | 486 | 1.49e-118 | 364 |
| MS.gene01961.t1 | MTR_5g015790 | 40.283 | 494 | 251 | 9 | 1 | 463 | 1 | 481 | 1.85e-116 | 359 |
| MS.gene01961.t1 | MTR_1g106430 | 36.417 | 508 | 276 | 7 | 1 | 473 | 1 | 496 | 3.68e-112 | 348 |
| MS.gene01961.t1 | MTR_4g093850 | 36.398 | 533 | 275 | 7 | 5 | 476 | 23 | 552 | 1.05e-105 | 333 |
| MS.gene01961.t1 | MTR_2g009340 | 35.185 | 540 | 279 | 7 | 5 | 476 | 23 | 559 | 2.92e-101 | 322 |
| MS.gene01961.t1 | MTR_2g018750 | 34.132 | 501 | 287 | 8 | 1 | 463 | 1 | 496 | 4.89e-88 | 285 |
| MS.gene01961.t1 | MTR_5g016060 | 34.783 | 460 | 276 | 7 | 25 | 465 | 39 | 493 | 2.77e-87 | 283 |
| MS.gene01961.t1 | MTR_4g093850 | 35.430 | 477 | 244 | 7 | 5 | 420 | 23 | 496 | 1.89e-86 | 278 |
| MS.gene01961.t1 | MTR_4g095430 | 34.716 | 458 | 278 | 9 | 25 | 465 | 12 | 465 | 1.48e-81 | 267 |
| MS.gene01961.t1 | MTR_8g090220 | 33.198 | 494 | 267 | 12 | 8 | 460 | 35 | 506 | 4.49e-81 | 264 |
| MS.gene01961.t1 | MTR_8g090220 | 33.469 | 493 | 265 | 12 | 8 | 459 | 35 | 505 | 3.30e-80 | 265 |
| MS.gene01961.t1 | MTR_1g094850 | 33.066 | 499 | 295 | 9 | 1 | 465 | 1 | 494 | 3.48e-78 | 259 |
| MS.gene01961.t1 | MTR_1g064360 | 30.754 | 491 | 298 | 9 | 1 | 463 | 1 | 477 | 4.54e-75 | 249 |
| MS.gene01961.t1 | MTR_2g084595 | 32.842 | 475 | 283 | 9 | 24 | 463 | 21 | 494 | 4.76e-75 | 251 |
| MS.gene01961.t1 | MTR_4g022330 | 32.128 | 470 | 295 | 6 | 25 | 473 | 33 | 499 | 1.86e-74 | 249 |
| MS.gene01961.t1 | MTR_8g078900 | 30.584 | 497 | 288 | 8 | 23 | 463 | 17 | 512 | 2.18e-73 | 247 |
| MS.gene01961.t1 | MTR_3g062540 | 30.853 | 457 | 281 | 6 | 25 | 465 | 23 | 460 | 1.14e-72 | 243 |
| MS.gene01961.t1 | MTR_2g048390 | 32.599 | 454 | 266 | 9 | 1 | 415 | 1 | 453 | 7.31e-71 | 235 |
| MS.gene01961.t1 | MTR_5g075640 | 30.538 | 465 | 281 | 6 | 25 | 465 | 24 | 470 | 2.44e-69 | 234 |
| MS.gene01961.t1 | MTR_8g078900 | 30.705 | 482 | 277 | 8 | 38 | 463 | 2 | 482 | 4.46e-69 | 235 |
| MS.gene01961.t1 | MTR_7g108290 | 32.708 | 480 | 268 | 11 | 23 | 463 | 33 | 496 | 4.99e-69 | 236 |
| MS.gene01961.t1 | MTR_3g062540 | 31.651 | 436 | 263 | 7 | 46 | 465 | 2 | 418 | 8.07e-68 | 229 |
| MS.gene01961.t1 | MTR_7g073980 | 31.501 | 473 | 279 | 11 | 22 | 463 | 29 | 487 | 1.35e-67 | 231 |
| MS.gene01961.t1 | MTR_8g078900 | 32.326 | 430 | 254 | 7 | 70 | 463 | 44 | 472 | 2.57e-67 | 230 |
| MS.gene01961.t1 | MTR_1g088885 | 30.208 | 480 | 276 | 10 | 23 | 463 | 33 | 492 | 3.48e-66 | 227 |
| MS.gene01961.t1 | MTR_5g075640 | 30.405 | 444 | 267 | 6 | 46 | 465 | 2 | 427 | 2.09e-63 | 218 |
| MS.gene01961.t1 | MTR_1g082690 | 29.844 | 449 | 271 | 8 | 29 | 463 | 61 | 479 | 1.92e-62 | 215 |
| MS.gene01961.t1 | MTR_2g084595 | 31.616 | 427 | 256 | 9 | 24 | 415 | 21 | 446 | 5.32e-60 | 206 |
| MS.gene01961.t1 | MTR_5g016060 | 32.283 | 381 | 234 | 7 | 104 | 465 | 4 | 379 | 3.04e-57 | 201 |
| MS.gene01961.t1 | MTR_8g078900 | 28.731 | 449 | 263 | 8 | 23 | 415 | 17 | 464 | 2.28e-54 | 191 |
| MS.gene01961.t1 | MTR_8g078900 | 30.366 | 382 | 229 | 7 | 70 | 415 | 44 | 424 | 1.19e-48 | 175 |
| MS.gene01961.t1 | MTR_2g102730 | 34.228 | 298 | 171 | 5 | 183 | 465 | 6 | 293 | 9.82e-41 | 153 |
| MS.gene01961.t1 | MTR_4g011530 | 34.982 | 283 | 151 | 6 | 201 | 465 | 46 | 313 | 3.53e-40 | 152 |
| MS.gene01961.t1 | MTR_4g074190 | 24.948 | 485 | 292 | 11 | 29 | 465 | 6 | 466 | 2.15e-33 | 134 |
| MS.gene01961.t1 | MTR_4g045767 | 27.685 | 419 | 254 | 12 | 70 | 465 | 50 | 442 | 4.48e-33 | 133 |
| MS.gene01961.t1 | MTR_4g074190 | 24.887 | 442 | 264 | 9 | 68 | 465 | 3 | 420 | 1.50e-30 | 125 |
| MS.gene01961.t1 | MTR_1g035720 | 24.950 | 505 | 298 | 14 | 29 | 480 | 6 | 482 | 4.55e-29 | 121 |
| MS.gene01961.t1 | MTR_4g074190 | 24.771 | 436 | 256 | 12 | 29 | 416 | 6 | 417 | 1.41e-27 | 116 |
| MS.gene01961.t1 | MTR_4g080720 | 68.750 | 64 | 20 | 0 | 1 | 64 | 1 | 64 | 1.84e-23 | 94.4 |
| MS.gene01961.t1 | MTR_1g105870 | 31.053 | 190 | 123 | 3 | 33 | 220 | 38 | 221 | 2.56e-23 | 100 |
| MS.gene01961.t1 | MTR_2g010890 | 23.451 | 452 | 284 | 15 | 100 | 527 | 8 | 421 | 2.71e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01961.t1 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0.0 | 637 |
| MS.gene01961.t1 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0.0 | 637 |
| MS.gene01961.t1 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0.0 | 637 |
| MS.gene01961.t1 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 114 | 663 | 0.0 | 636 |
| MS.gene01961.t1 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 5.85e-140 | 420 |
| MS.gene01961.t1 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 5.85e-140 | 420 |
| MS.gene01961.t1 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 5.85e-140 | 420 |
| MS.gene01961.t1 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 5.85e-140 | 420 |
| MS.gene01961.t1 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 5.85e-140 | 420 |
| MS.gene01961.t1 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 5.85e-140 | 420 |
| MS.gene01961.t1 | AT3G26490 | 39.147 | 539 | 258 | 12 | 1 | 483 | 1 | 525 | 2.63e-118 | 363 |
| MS.gene01961.t1 | AT3G26490 | 39.147 | 539 | 258 | 12 | 1 | 483 | 1 | 525 | 2.63e-118 | 363 |
| MS.gene01961.t1 | AT3G26490 | 39.147 | 539 | 258 | 12 | 1 | 483 | 1 | 525 | 2.63e-118 | 363 |
| MS.gene01961.t1 | AT4G31820 | 36.280 | 543 | 300 | 11 | 1 | 525 | 1 | 515 | 3.27e-117 | 360 |
| MS.gene01961.t1 | AT2G14820 | 37.302 | 504 | 277 | 7 | 1 | 473 | 1 | 496 | 1.37e-115 | 357 |
| MS.gene01961.t1 | AT2G14820 | 37.302 | 504 | 277 | 7 | 1 | 473 | 1 | 496 | 1.37e-115 | 357 |
| MS.gene01961.t1 | AT4G37590 | 39.264 | 489 | 265 | 8 | 1 | 473 | 1 | 473 | 2.52e-112 | 347 |
| MS.gene01961.t1 | AT2G23050 | 37.844 | 473 | 259 | 8 | 1 | 463 | 1 | 448 | 7.65e-110 | 337 |
| MS.gene01961.t1 | AT5G67440 | 38.821 | 492 | 270 | 10 | 1 | 471 | 1 | 482 | 3.75e-108 | 336 |
| MS.gene01961.t1 | AT5G67440 | 38.821 | 492 | 270 | 10 | 1 | 471 | 1 | 482 | 3.75e-108 | 336 |
| MS.gene01961.t1 | AT4G31820 | 35.714 | 490 | 270 | 10 | 53 | 525 | 1 | 462 | 4.29e-102 | 319 |
| MS.gene01961.t1 | AT3G26490 | 39.030 | 474 | 219 | 12 | 1 | 418 | 1 | 460 | 2.84e-98 | 308 |
| MS.gene01961.t1 | AT5G67440 | 38.803 | 451 | 246 | 9 | 41 | 471 | 5 | 445 | 1.03e-96 | 305 |
| MS.gene01961.t1 | AT5G64330 | 32.657 | 591 | 280 | 8 | 7 | 481 | 33 | 621 | 1.43e-90 | 295 |
| MS.gene01961.t1 | AT1G30440 | 34.381 | 509 | 285 | 11 | 1 | 463 | 1 | 506 | 9.08e-89 | 288 |
| MS.gene01961.t1 | AT5G03250 | 32.869 | 502 | 296 | 8 | 1 | 463 | 1 | 500 | 1.02e-81 | 268 |
| MS.gene01961.t1 | AT5G67385 | 32.969 | 458 | 283 | 8 | 25 | 465 | 24 | 474 | 2.38e-81 | 267 |
| MS.gene01961.t1 | AT5G13600 | 34.280 | 493 | 292 | 9 | 1 | 463 | 1 | 491 | 1.14e-80 | 265 |
| MS.gene01961.t1 | AT2G23050 | 38.655 | 357 | 190 | 6 | 111 | 463 | 1 | 332 | 8.36e-78 | 251 |
| MS.gene01961.t1 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.53e-76 | 253 |
| MS.gene01961.t1 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.53e-76 | 253 |
| MS.gene01961.t1 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.53e-76 | 253 |
| MS.gene01961.t1 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.53e-76 | 253 |
| MS.gene01961.t1 | AT2G30520 | 32.898 | 459 | 272 | 7 | 25 | 465 | 29 | 469 | 6.22e-75 | 250 |
| MS.gene01961.t1 | AT5G48800 | 31.398 | 465 | 275 | 6 | 25 | 465 | 40 | 484 | 5.06e-73 | 245 |
| MS.gene01961.t1 | AT5G66560 | 31.091 | 550 | 286 | 12 | 23 | 494 | 16 | 550 | 3.75e-72 | 244 |
| MS.gene01961.t1 | AT5G10250 | 28.793 | 580 | 328 | 11 | 5 | 535 | 29 | 572 | 4.94e-72 | 243 |
| MS.gene01961.t1 | AT5G10250 | 29.663 | 563 | 324 | 12 | 8 | 535 | 32 | 557 | 1.23e-71 | 241 |
| MS.gene01961.t1 | AT5G66560 | 33.189 | 461 | 259 | 10 | 68 | 494 | 66 | 511 | 8.76e-70 | 237 |
| MS.gene01961.t1 | AT5G66560 | 33.189 | 461 | 259 | 10 | 68 | 494 | 76 | 521 | 1.33e-69 | 237 |
| MS.gene01961.t1 | AT2G30520 | 32.877 | 438 | 258 | 7 | 46 | 465 | 2 | 421 | 4.24e-69 | 233 |
| MS.gene01961.t1 | AT2G30520 | 32.877 | 438 | 258 | 7 | 46 | 465 | 2 | 421 | 4.24e-69 | 233 |
| MS.gene01961.t1 | AT2G47860 | 31.590 | 478 | 275 | 10 | 23 | 465 | 34 | 494 | 7.25e-69 | 234 |
| MS.gene01961.t1 | AT1G03010 | 31.670 | 521 | 295 | 15 | 23 | 499 | 6 | 509 | 1.29e-68 | 233 |
| MS.gene01961.t1 | AT3G49970 | 32.624 | 423 | 237 | 10 | 38 | 448 | 6 | 392 | 1.64e-68 | 231 |
| MS.gene01961.t1 | AT3G49970 | 32.624 | 423 | 237 | 10 | 38 | 448 | 6 | 392 | 1.64e-68 | 231 |
| MS.gene01961.t1 | AT1G03010 | 31.520 | 533 | 302 | 16 | 11 | 499 | 22 | 535 | 1.66e-68 | 234 |
| MS.gene01961.t1 | AT1G03010 | 31.538 | 520 | 297 | 14 | 23 | 499 | 33 | 536 | 2.35e-68 | 233 |
| MS.gene01961.t1 | AT3G44820 | 31.687 | 486 | 277 | 10 | 29 | 463 | 26 | 507 | 1.30e-65 | 226 |
| MS.gene01961.t1 | AT2G47860 | 30.140 | 501 | 275 | 11 | 23 | 465 | 34 | 517 | 4.07e-64 | 222 |
| MS.gene01961.t1 | AT3G08660 | 28.846 | 520 | 320 | 13 | 22 | 520 | 30 | 520 | 8.49e-62 | 214 |
| MS.gene01961.t1 | AT3G50840 | 32.128 | 470 | 279 | 9 | 16 | 463 | 6 | 457 | 4.26e-61 | 212 |
| MS.gene01961.t1 | AT3G08570 | 29.645 | 479 | 298 | 11 | 13 | 463 | 21 | 488 | 2.31e-60 | 211 |
| MS.gene01961.t1 | AT5G64330 | 38.433 | 268 | 137 | 3 | 7 | 248 | 33 | 298 | 2.86e-54 | 196 |
| MS.gene01961.t1 | AT5G64330 | 37.154 | 253 | 126 | 2 | 262 | 481 | 369 | 621 | 7.19e-39 | 152 |
| MS.gene01961.t1 | AT5G66560 | 30.258 | 466 | 245 | 10 | 26 | 415 | 19 | 480 | 2.52e-53 | 189 |
| MS.gene01961.t1 | AT3G50840 | 31.891 | 439 | 259 | 9 | 47 | 463 | 1 | 421 | 3.64e-53 | 190 |
| MS.gene01961.t1 | AT3G50840 | 31.891 | 439 | 259 | 9 | 47 | 463 | 1 | 421 | 3.64e-53 | 190 |
| MS.gene01961.t1 | AT3G08660 | 28.630 | 489 | 299 | 13 | 53 | 520 | 1 | 460 | 7.76e-53 | 189 |
| MS.gene01961.t1 | AT2G47860 | 30.841 | 428 | 244 | 10 | 23 | 415 | 34 | 444 | 2.37e-52 | 186 |
| MS.gene01961.t1 | AT5G03250 | 30.256 | 390 | 233 | 7 | 111 | 463 | 1 | 388 | 2.09e-48 | 176 |
| MS.gene01961.t1 | AT2G47860 | 29.268 | 451 | 244 | 11 | 23 | 415 | 34 | 467 | 8.68e-48 | 174 |
| MS.gene01961.t1 | AT3G08660 | 28.537 | 417 | 251 | 11 | 22 | 418 | 30 | 419 | 4.33e-46 | 168 |
| MS.gene01961.t1 | AT5G64330 | 38.983 | 236 | 116 | 3 | 39 | 248 | 6 | 239 | 6.57e-46 | 171 |
| MS.gene01961.t1 | AT5G64330 | 37.154 | 253 | 126 | 2 | 262 | 481 | 310 | 562 | 3.45e-39 | 152 |
| MS.gene01961.t1 | AT1G52770 | 34.494 | 316 | 175 | 7 | 201 | 495 | 28 | 332 | 3.67e-44 | 163 |
| MS.gene01961.t1 | AT2G47860 | 28.974 | 390 | 228 | 9 | 111 | 465 | 1 | 376 | 1.33e-42 | 160 |
| MS.gene01961.t1 | AT2G47860 | 28.974 | 390 | 228 | 9 | 111 | 465 | 1 | 376 | 1.33e-42 | 160 |
| MS.gene01961.t1 | AT5G48130 | 27.097 | 465 | 280 | 14 | 24 | 463 | 37 | 467 | 6.84e-41 | 157 |
| MS.gene01961.t1 | AT3G03510 | 31.061 | 396 | 217 | 11 | 80 | 463 | 8 | 359 | 9.60e-40 | 151 |
| MS.gene01961.t1 | AT5G17580 | 26.526 | 475 | 305 | 9 | 10 | 463 | 4 | 455 | 6.30e-37 | 145 |
| MS.gene01961.t1 | AT5G17580 | 27.465 | 426 | 266 | 8 | 59 | 463 | 37 | 440 | 1.56e-36 | 144 |
| MS.gene01961.t1 | AT3G15570 | 30.945 | 307 | 175 | 7 | 189 | 468 | 15 | 311 | 4.85e-35 | 138 |
| MS.gene01961.t1 | AT3G19850 | 25.207 | 484 | 299 | 11 | 21 | 463 | 2 | 463 | 7.91e-35 | 139 |
| MS.gene01961.t1 | AT3G22104 | 26.770 | 452 | 259 | 17 | 29 | 448 | 7 | 418 | 4.60e-27 | 115 |
| MS.gene01961.t1 | AT1G50280 | 22.931 | 423 | 286 | 7 | 66 | 459 | 16 | 427 | 2.74e-26 | 113 |
| MS.gene01961.t1 | AT1G50280 | 22.931 | 423 | 286 | 7 | 66 | 459 | 49 | 460 | 3.27e-26 | 113 |
| MS.gene01961.t1 | AT3G22104 | 26.316 | 380 | 211 | 14 | 98 | 448 | 4 | 343 | 7.83e-17 | 83.6 |
| MS.gene01961.t1 | AT3G22104 | 26.316 | 380 | 211 | 14 | 98 | 448 | 4 | 343 | 7.83e-17 | 83.6 |
| MS.gene01961.t1 | AT3G22104 | 26.316 | 380 | 211 | 14 | 98 | 448 | 4 | 343 | 7.83e-17 | 83.6 |
Find 108 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGCATTTCAAGTCATTT+AGG | 0.230690 | 2.2:-59850923 | MS.gene01961:CDS |
| GTTCTTCCACCACAGCTAAT+TGG | 0.289528 | 2.2:-59851127 | MS.gene01961:CDS |
| GCACTTCAGGGGACAATCTT+TGG | 0.295952 | 2.2:+59850115 | None:intergenic |
| AAACAACATAAGCTACTTCT+AGG | 0.305988 | 2.2:-59849985 | MS.gene01961:CDS |
| GGCAATAAACATTTATCTTA+AGG | 0.309851 | 2.2:-59850579 | MS.gene01961:intron |
| ACAGCGTGCGCACGCACTTC+AGG | 0.311538 | 2.2:+59850102 | None:intergenic |
| CATTTGCGATGCTGAACTTC+CGG | 0.323956 | 2.2:+59851045 | None:intergenic |
| AGAAGTTATAAATCAGAATA+TGG | 0.331860 | 2.2:-59849700 | MS.gene01961:CDS |
| TCCAAGTTCACCATGCTTCC+TGG | 0.340331 | 2.2:+59849751 | None:intergenic |
| GTCAAGGAAGAAAGTATTCC+AGG | 0.354497 | 2.2:-59849769 | MS.gene01961:CDS |
| GCCTTCCTTTACCTGTGATA+AGG | 0.357490 | 2.2:+59851596 | None:intergenic |
| AGAGTTAGTTCAAGTTGTAT+TGG | 0.373725 | 2.2:-59850810 | MS.gene01961:CDS |
| ACTCTACATCATAAGAATTC+AGG | 0.379747 | 2.2:+59850828 | None:intergenic |
| ATCATAAAGGTTAAAAGTTC+CGG | 0.381413 | 2.2:-59851064 | MS.gene01961:CDS |
| GTTCCTGTTGTCCACAGAAC+CGG | 0.386093 | 2.2:+59850754 | None:intergenic |
| TTTAGTTCATGCATTCTTGA+AGG | 0.388872 | 2.2:-59851732 | MS.gene01961:CDS |
| CCTTCCTTTACCTGTGATAA+GGG | 0.392042 | 2.2:+59851597 | None:intergenic |
| CTTTCTCTTGGTCATAGTAT+AGG | 0.394661 | 2.2:+59850040 | None:intergenic |
| GTGATTATGTGCAGGTTAAA+TGG | 0.396517 | 2.2:-59851285 | MS.gene01961:intron |
| AGCTGCACAACAGTTCTTAA+TGG | 0.398507 | 2.2:+59850063 | None:intergenic |
| TCCTCAGTCCACCAATCCTT+TGG | 0.399964 | 2.2:+59851211 | None:intergenic |
| GTTGAGAGGGGAAACTTTGT+AGG | 0.400848 | 2.2:-59851771 | MS.gene01961:CDS |
| TCCAGGAAGCATGGTGAACT+TGG | 0.413318 | 2.2:-59849752 | MS.gene01961:CDS |
| CAACGGACTCATTCATTTGA+AGG | 0.422727 | 2.2:+59851790 | None:intergenic |
| CCTTGCCACAACTTGAAGAT+AGG | 0.424728 | 2.2:+59850688 | None:intergenic |
| TTTCCTTTGAGTCTTTCTCT+TGG | 0.425900 | 2.2:+59850028 | None:intergenic |
| ACCCCGGTTCTGTGGACAAC+AGG | 0.430002 | 2.2:-59850757 | MS.gene01961:CDS |
| AGGGTCAACACAAAACTAAA+AGG | 0.432339 | 2.2:-59849843 | MS.gene01961:CDS |
| CAGAACAAAGTCTTTGTAGA+AGG | 0.439216 | 2.2:+59851961 | None:intergenic |
| GATCATAAGCAAATGCTCAT+AGG | 0.443050 | 2.2:-59849730 | MS.gene01961:CDS |
| GCTGAAAGTGTACCAGCTAT+TGG | 0.449675 | 2.2:-59850629 | MS.gene01961:CDS |
| GTTCATGCATTCTTGAAGGT+TGG | 0.453604 | 2.2:-59851728 | MS.gene01961:CDS |
| TAAGATAAATGTTTATTGCC+TGG | 0.454792 | 2.2:+59850582 | None:intergenic |
| TTAAGATCAATCAGAAAAGT+TGG | 0.457461 | 2.2:-59850725 | MS.gene01961:CDS |
| GAAAAGATCTATATTTAGAA+TGG | 0.463506 | 2.2:+59851183 | None:intergenic |
| ATCATTCTGTTCCAAAGGAT+TGG | 0.466212 | 2.2:-59851222 | MS.gene01961:CDS |
| CGGAAGTTCAGCATCGCAAA+TGG | 0.468266 | 2.2:-59851044 | MS.gene01961:CDS |
| CAGCGTGCGCACGCACTTCA+GGG | 0.472237 | 2.2:+59850103 | None:intergenic |
| GTTAGATGATAAATTAGCCT+TGG | 0.472933 | 2.2:-59849821 | MS.gene01961:CDS |
| AATGCATAAACAGGTGCATT+CGG | 0.477091 | 2.2:-59850184 | MS.gene01961:intron |
| CCATGGCTATCTCTTGTGGC+AGG | 0.481421 | 2.2:+59849949 | None:intergenic |
| TCTTGCTGAGAGTAGAGAAA+AGG | 0.481826 | 2.2:-59849863 | MS.gene01961:CDS |
| TCTTGAATTCTTCCTTGTCA+AGG | 0.482245 | 2.2:+59849911 | None:intergenic |
| CATCGCAAATGGAAGAATCC+AGG | 0.483080 | 2.2:-59851033 | MS.gene01961:CDS |
| GCTATGAAGTTCATGAAACT+TGG | 0.484891 | 2.2:-59852377 | MS.gene01961:CDS |
| TGCTCTAATCTGCCAATAGC+TGG | 0.487466 | 2.2:+59850617 | None:intergenic |
| CCAGAGTGGTCTGAGAATCT+TGG | 0.492441 | 2.2:-59851666 | MS.gene01961:CDS |
| GATGGTTATAAGAGGAGTCA+AGG | 0.495344 | 2.2:-59849785 | MS.gene01961:CDS |
| TTCCTGTTGTCCACAGAACC+GGG | 0.500429 | 2.2:+59850755 | None:intergenic |
| AGCCATGGTAAAGGATCTCT+TGG | 0.500525 | 2.2:-59849934 | MS.gene01961:CDS |
| GTGGTTACCTTGCATCATAA+AGG | 0.502589 | 2.2:-59851077 | MS.gene01961:CDS |
| TATAAGATAAGTTGTATCGT+TGG | 0.507629 | 2.2:+59852103 | None:intergenic |
| TCTCCACTTGTTTCAAAATG+TGG | 0.518950 | 2.2:-59851984 | MS.gene01961:CDS |
| ATTCTGTTCCAAAGGATTGG+TGG | 0.520945 | 2.2:-59851219 | MS.gene01961:CDS |
| TTTACCATGGCTATCTCTTG+TGG | 0.524518 | 2.2:+59849945 | None:intergenic |
| GTTGTAACCGGGCCTAGTGT+AGG | 0.526256 | 2.2:+59851255 | None:intergenic |
| CTTGCTGAGAGTAGAGAAAA+GGG | 0.528622 | 2.2:-59849862 | MS.gene01961:CDS |
| TGATTCCTATCTTCAAGTTG+TGG | 0.532607 | 2.2:-59850693 | MS.gene01961:CDS |
| GCGGAAAAGAAGCGCTTGTG+TGG | 0.534519 | 2.2:-59850150 | MS.gene01961:CDS |
| AGCATGATTCCTGCAGATAG+AGG | 0.543978 | 2.2:-59850977 | MS.gene01961:CDS |
| CTATCTTCAAGTTGTGGCAA+GGG | 0.544076 | 2.2:-59850687 | MS.gene01961:CDS |
| TGCATGTATATGCATGTAAG+TGG | 0.544550 | 2.2:-59851096 | MS.gene01961:CDS |
| GATAGAGGTTCAGTTTCAGT+TGG | 0.544692 | 2.2:-59850962 | MS.gene01961:CDS |
| GAAACTGAACCTCTATCTGC+AGG | 0.546404 | 2.2:+59850968 | None:intergenic |
| AATGAATGAGTCCGTTGAGA+GGG | 0.548065 | 2.2:-59851784 | MS.gene01961:CDS |
| GCTTCACCAATTAGCTGTGG+TGG | 0.553316 | 2.2:+59851121 | None:intergenic |
| CCTATCTTCAAGTTGTGGCA+AGG | 0.556195 | 2.2:-59850688 | MS.gene01961:CDS |
| TCCTACACCTACACTAGGCC+CGG | 0.558420 | 2.2:-59851262 | MS.gene01961:CDS |
| ACAAGAGATAGCCATGGTAA+AGG | 0.563901 | 2.2:-59849943 | MS.gene01961:CDS |
| AGTTCTTACACCCTTATCAC+AGG | 0.568010 | 2.2:-59851607 | MS.gene01961:intron |
| AGTGGCGTGCAACGTTGCAA+TGG | 0.572556 | 2.2:+59851698 | None:intergenic |
| CTAGAGCTTAATGATATGCC+TGG | 0.572616 | 2.2:-59851912 | MS.gene01961:CDS |
| AAGAATCTACCCCGGTTCTG+TGG | 0.574839 | 2.2:-59850765 | MS.gene01961:CDS |
| TCTACACGGAACAAGCTGCC+AGG | 0.576435 | 2.2:-59852337 | MS.gene01961:intron |
| AGAGCATCATTCTGTTCCAA+AGG | 0.584180 | 2.2:-59851227 | MS.gene01961:CDS |
| CCAAGATTCTCAGACCACTC+TGG | 0.584674 | 2.2:+59851666 | None:intergenic |
| GGCATATCATTAAGCTCTAG+AGG | 0.584689 | 2.2:+59851915 | None:intergenic |
| TTCTCTACTCTCAGCAAGAG+AGG | 0.587532 | 2.2:+59849867 | None:intergenic |
| AGAGCATGATGATTTGTACC+AGG | 0.593159 | 2.2:-59850600 | MS.gene01961:CDS |
| AGAAAGTATTCCAGGAAGCA+TGG | 0.597512 | 2.2:-59849761 | MS.gene01961:CDS |
| AGAGCTACAAACTTTGACAC+TGG | 0.597683 | 2.2:+59850653 | None:intergenic |
| ATCGCAAATGGAAGAATCCA+GGG | 0.604485 | 2.2:-59851032 | MS.gene01961:CDS |
| ATAAGCAAATGCTCATAGGA+AGG | 0.605385 | 2.2:-59849726 | MS.gene01961:CDS |
| AGCTTAGCAGCACAAAGTGA+AGG | 0.608513 | 2.2:+59851813 | None:intergenic |
| TACAAAGTTTCCCCTCTCAA+CGG | 0.611119 | 2.2:+59851773 | None:intergenic |
| TGACCAAGAGAAAGACTCAA+AGG | 0.612388 | 2.2:-59850031 | MS.gene01961:CDS |
| AGCGTGCGCACGCACTTCAG+GGG | 0.616562 | 2.2:+59850104 | None:intergenic |
| CGGAAAAGAAGCGCTTGTGT+GGG | 0.622895 | 2.2:-59850149 | MS.gene01961:CDS |
| TCAAAAGCTTCTGATCCACC+AGG | 0.628037 | 2.2:+59851894 | None:intergenic |
| AAATGAATGAGTCCGTTGAG+AGG | 0.628513 | 2.2:-59851785 | MS.gene01961:CDS |
| AGGATCTCTTGGCCTTGACA+AGG | 0.630881 | 2.2:-59849923 | MS.gene01961:CDS |
| GGTGCATTCGGACTTGAGCA+AGG | 0.634297 | 2.2:-59850172 | MS.gene01961:CDS |
| AGTTCATGAAACTTGGAACA+AGG | 0.644491 | 2.2:-59852370 | MS.gene01961:CDS |
| ATGAATGAGTCCGTTGAGAG+GGG | 0.649978 | 2.2:-59851783 | MS.gene01961:CDS |
| GAGCTTAATGATATGCCTGG+TGG | 0.663018 | 2.2:-59851909 | MS.gene01961:CDS |
| AATGGTCCTACACCTACACT+AGG | 0.678371 | 2.2:-59851267 | MS.gene01961:CDS |
| TACAACTTATCTTATACACA+AGG | 0.683273 | 2.2:-59852096 | MS.gene01961:intron |
| GGCCAAGAGATCCTTTACCA+TGG | 0.685445 | 2.2:+59849932 | None:intergenic |
| AAGGTCAGATACTTTCTACA+CGG | 0.691782 | 2.2:-59852351 | MS.gene01961:CDS |
| AAAGCTTCACCAATTAGCTG+TGG | 0.694004 | 2.2:+59851118 | None:intergenic |
| TCCTGTTGTCCACAGAACCG+GGG | 0.695896 | 2.2:+59850756 | None:intergenic |
| ACCGGGCCTAGTGTAGGTGT+AGG | 0.701731 | 2.2:+59851261 | None:intergenic |
| CCTGCCACAAGAGATAGCCA+TGG | 0.709754 | 2.2:-59849949 | MS.gene01961:CDS |
| TCCAAAGGATTGGTGGACTG+AGG | 0.711549 | 2.2:-59851212 | MS.gene01961:CDS |
| AAGTAGCATACAGTTTCACG+AGG | 0.711955 | 2.2:-59850864 | MS.gene01961:CDS |
| CCACTCTGGTAACTTCTCAG+TGG | 0.722395 | 2.2:+59851680 | None:intergenic |
| GCATTCGGACTTGAGCAAGG+CGG | 0.760136 | 2.2:-59850169 | MS.gene01961:CDS |
| CCACTGAGAAGTTACCAGAG+TGG | 0.775962 | 2.2:-59851680 | MS.gene01961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAAGTATATTAATG+AGG | - | chr2.2:59850620-59850639 | MS.gene01961:CDS | 10.0% |
| !!! | AAATAAAAGTATATTAATGA+GGG | - | chr2.2:59850621-59850640 | MS.gene01961:CDS | 10.0% |
| !!! | ATTTTCAATGTTTTAAAAAA+CGG | - | chr2.2:59851680-59851699 | MS.gene01961:CDS | 10.0% |
| !! | AGAAGTTATAAATCAGAATA+TGG | - | chr2.2:59852355-59852374 | MS.gene01961:CDS | 20.0% |
| !! | ATAAATCTTGGTTATATCTA+TGG | - | chr2.2:59851823-59851842 | MS.gene01961:CDS | 20.0% |
| !! | CATTAATAAATAGTAGTTAG+CGG | - | chr2.2:59850574-59850593 | MS.gene01961:intron | 20.0% |
| !! | CATTCATGATTATGATAATA+AGG | + | chr2.2:59849888-59849907 | None:intergenic | 20.0% |
| !! | GAAAAGATCTATATTTAGAA+TGG | + | chr2.2:59850875-59850894 | None:intergenic | 20.0% |
| !! | TATAACCAAGATTTATAATG+TGG | + | chr2.2:59851819-59851838 | None:intergenic | 20.0% |
| !! | TGTTAATGAAATAACATGAT+TGG | + | chr2.2:59851521-59851540 | None:intergenic | 20.0% |
| !! | TTTGATATTGCAGAAATTTA+CGG | + | chr2.2:59851777-59851796 | None:intergenic | 20.0% |
| !!! | GAACATTTTTTGTTTAACAA+TGG | - | chr2.2:59850748-59850767 | MS.gene01961:CDS | 20.0% |
| !!! | TAAACTGTCTTAAATTTTCA+TGG | - | chr2.2:59851548-59851567 | MS.gene01961:intron | 20.0% |
| !!! | TTGATTGATAATCTAAAATG+AGG | - | chr2.2:59850664-59850683 | MS.gene01961:CDS | 20.0% |
| ! | ACAAAATCAAATCTTATGAG+GGG | + | chr2.2:59850495-59850514 | None:intergenic | 25.0% |
| ! | ACAAGTAAATACTCCAAATA+TGG | - | chr2.2:59850696-59850715 | MS.gene01961:CDS | 25.0% |
| ! | AGACAAAATCAAATCTTATG+AGG | + | chr2.2:59850497-59850516 | None:intergenic | 25.0% |
| ! | ATCATAAAGGTTAAAAGTTC+CGG | - | chr2.2:59850991-59851010 | MS.gene01961:CDS | 25.0% |
| ! | ATTATCATAATCATGAATGC+AGG | - | chr2.2:59849889-59849908 | MS.gene01961:CDS | 25.0% |
| ! | GACAAAATCAAATCTTATGA+GGG | + | chr2.2:59850496-59850515 | None:intergenic | 25.0% |
| ! | GGCAATAAACATTTATCTTA+AGG | - | chr2.2:59851476-59851495 | MS.gene01961:intron | 25.0% |
| ! | TAAGATAAATGTTTATTGCC+TGG | + | chr2.2:59851476-59851495 | None:intergenic | 25.0% |
| ! | TACAACTTATCTTATACACA+AGG | - | chr2.2:59849959-59849978 | MS.gene01961:CDS | 25.0% |
| ! | TATAAGATAAGTTGTATCGT+TGG | + | chr2.2:59849955-59849974 | None:intergenic | 25.0% |
| ! | TCTCAAATCAAATAATGATG+TGG | + | chr2.2:59849819-59849838 | None:intergenic | 25.0% |
| ! | TTAAGATCAATCAGAAAAGT+TGG | - | chr2.2:59851330-59851349 | MS.gene01961:intron | 25.0% |
| ! | TTATCTTATACACAAGGTAT+CGG | - | chr2.2:59849965-59849984 | MS.gene01961:CDS | 25.0% |
| ! | TTCATCTGTGGTTTATAATT+AGG | - | chr2.2:59849749-59849768 | MS.gene01961:CDS | 25.0% |
| !! | AGATTTTGTTGACAAGATAT+AGG | - | chr2.2:59849836-59849855 | MS.gene01961:CDS | 25.0% |
| !!! | AATTTTTCTGTTTTTTTCCC+TGG | + | chr2.2:59851043-59851062 | None:intergenic | 25.0% |
| !!! | TGGAAAGTTTTTTGAAGTTT+TGG | - | chr2.2:59851265-59851284 | MS.gene01961:CDS | 25.0% |
| AAACAACATAAGCTACTTCT+AGG | - | chr2.2:59852070-59852089 | MS.gene01961:intron | 30.0% | |
| ACTCTACATCATAAGAATTC+AGG | + | chr2.2:59851230-59851249 | None:intergenic | 30.0% | |
| GAGAAAAAGATGGTTATAAG+AGG | - | chr2.2:59852262-59852281 | MS.gene01961:intron | 30.0% | |
| TATCGGAATTAAATTGAGTG+TGG | - | chr2.2:59849982-59850001 | MS.gene01961:CDS | 30.0% | |
| TGTGACCACATTATAAATCT+TGG | - | chr2.2:59851811-59851830 | MS.gene01961:CDS | 30.0% | |
| TGTTGACAAGATATAGGTAT+AGG | - | chr2.2:59849842-59849861 | MS.gene01961:CDS | 30.0% | |
| ! | CTTTTAACCTTTATGATGCA+AGG | + | chr2.2:59850988-59851007 | None:intergenic | 30.0% |
| ! | GTCAAGTCAGCTTTTAATAT+AGG | - | chr2.2:59851654-59851673 | MS.gene01961:CDS | 30.0% |
| ! | GTTAGATGATAAATTAGCCT+TGG | - | chr2.2:59852234-59852253 | MS.gene01961:intron | 30.0% |
| ! | TTGAGCATTTCAAGTCATTT+AGG | - | chr2.2:59851132-59851151 | MS.gene01961:CDS | 30.0% |
| ! | TTTAGTTCATGCATTCTTGA+AGG | - | chr2.2:59850323-59850342 | MS.gene01961:intron | 30.0% |
| ! | TTTTTGCAACTTTGTACTAG+AGG | + | chr2.2:59852053-59852072 | None:intergenic | 30.0% |
| !! | AGAGTTAGTTCAAGTTGTAT+TGG | - | chr2.2:59851245-59851264 | MS.gene01961:CDS | 30.0% |
| !! | TTGGTTTTTATCACAAGATC+AGG | + | chr2.2:59849936-59849955 | None:intergenic | 30.0% |
| AAGGTCAGATACTTTCTACA+CGG | - | chr2.2:59849704-59849723 | MS.gene01961:CDS | 35.0% | |
| AATGCATAAACAGGTGCATT+CGG | - | chr2.2:59851871-59851890 | MS.gene01961:CDS | 35.0% | |
| AGGGTCAACACAAAACTAAA+AGG | - | chr2.2:59852212-59852231 | MS.gene01961:intron | 35.0% | |
| AGTTCATGAAACTTGGAACA+AGG | - | chr2.2:59849685-59849704 | MS.gene01961:CDS | 35.0% | |
| ATAAGCAAATGCTCATAGGA+AGG | - | chr2.2:59852329-59852348 | MS.gene01961:intron | 35.0% | |
| ATCATTCTGTTCCAAAGGAT+TGG | - | chr2.2:59850833-59850852 | MS.gene01961:CDS | 35.0% | |
| ATTAGACCCTTTACGACAAT+TGG | - | chr2.2:59851578-59851597 | MS.gene01961:intron | 35.0% | |
| CACAGATGAAAATGAATACC+TGG | + | chr2.2:59849739-59849758 | None:intergenic | 35.0% | |
| CAGAAATTTACGGTCAAATG+AGG | + | chr2.2:59851767-59851786 | None:intergenic | 35.0% | |
| CAGAACAAAGTCTTTGTAGA+AGG | + | chr2.2:59850097-59850116 | None:intergenic | 35.0% | |
| CTCTAACTAAGTGTCTTTCA+AGG | - | chr2.2:59850522-59850541 | MS.gene01961:intron | 35.0% | |
| CTTTCTCTTGGTCATAGTAT+AGG | + | chr2.2:59852018-59852037 | None:intergenic | 35.0% | |
| GAAAGACACTTAGTTAGAGA+CGG | + | chr2.2:59850521-59850540 | None:intergenic | 35.0% | |
| GATCATAAGCAAATGCTCAT+AGG | - | chr2.2:59852325-59852344 | MS.gene01961:intron | 35.0% | |
| GTGATTATGTGCAGGTTAAA+TGG | - | chr2.2:59850770-59850789 | MS.gene01961:CDS | 35.0% | |
| TAACAATGGTGATTATGTGC+AGG | - | chr2.2:59850762-59850781 | MS.gene01961:CDS | 35.0% | |
| TCTCCACTTGTTTCAAAATG+TGG | - | chr2.2:59850071-59850090 | MS.gene01961:CDS | 35.0% | |
| TCTTGAATTCTTCCTTGTCA+AGG | + | chr2.2:59852147-59852166 | None:intergenic | 35.0% | |
| TGCATGTATATGCATGTAAG+TGG | - | chr2.2:59850959-59850978 | MS.gene01961:CDS | 35.0% | |
| TGTGTGTTCAATGCATAAAC+AGG | - | chr2.2:59851862-59851881 | MS.gene01961:CDS | 35.0% | |
| TTAGACCCTTTACGACAATT+GGG | - | chr2.2:59851579-59851598 | MS.gene01961:intron | 35.0% | |
| TTTCCTTTGAGTCTTTCTCT+TGG | + | chr2.2:59852030-59852049 | None:intergenic | 35.0% | |
| ! | ATGCTCTTTTCTGTTGTAAC+CGG | + | chr2.2:59850815-59850834 | None:intergenic | 35.0% |
| ! | CAGGTATTCATTTTCATCTG+TGG | - | chr2.2:59849737-59849756 | MS.gene01961:CDS | 35.0% |
| ! | CATCTTTTTCTCAAAGTCCA+AGG | + | chr2.2:59852254-59852273 | None:intergenic | 35.0% |
| ! | CTCTTATGAAGTGCCATATT+TGG | + | chr2.2:59850712-59850731 | None:intergenic | 35.0% |
| ! | CTTGGACTTTGAGAAAAAGA+TGG | - | chr2.2:59852252-59852271 | MS.gene01961:intron | 35.0% |
| ! | CTTTGTGCAAAGTTTTGCTA+TGG | - | chr2.2:59850185-59850204 | MS.gene01961:intron | 35.0% |
| ! | GTTTTTATCACAAGATCAGG+AGG | + | chr2.2:59849933-59849952 | None:intergenic | 35.0% |
| ! | TCTTATGAGGGGAAGTTTTA+TGG | + | chr2.2:59850484-59850503 | None:intergenic | 35.0% |
| !! | TGATTCCTATCTTCAAGTTG+TGG | - | chr2.2:59851362-59851381 | MS.gene01961:intron | 35.0% |
| !! | TTTTGGAAAAGAATCTACCC+CGG | - | chr2.2:59851282-59851301 | MS.gene01961:intron | 35.0% |
| AAAGCTTCACCAATTAGCTG+TGG | + | chr2.2:59850940-59850959 | None:intergenic | 40.0% | |
| AAATGAATGAGTCCGTTGAG+AGG | - | chr2.2:59850270-59850289 | MS.gene01961:intron | 40.0% | |
| AAGTAGCATACAGTTTCACG+AGG | - | chr2.2:59851191-59851210 | MS.gene01961:CDS | 40.0% | |
| AATGAATGAGTCCGTTGAGA+GGG | - | chr2.2:59850271-59850290 | MS.gene01961:intron | 40.0% | |
| ACAAGAGATAGCCATGGTAA+AGG | - | chr2.2:59852112-59852131 | MS.gene01961:CDS | 40.0% | |
| ACTTAGCCCAATTGTCGTAA+AGG | + | chr2.2:59851588-59851607 | None:intergenic | 40.0% | |
| AGAGCTACAAACTTTGACAC+TGG | + | chr2.2:59851405-59851424 | None:intergenic | 40.0% | |
| AGCTGCACAACAGTTCTTAA+TGG | + | chr2.2:59851995-59852014 | None:intergenic | 40.0% | |
| AGTTCTTACACCCTTATCAC+AGG | - | chr2.2:59850448-59850467 | MS.gene01961:intron | 40.0% | |
| ATCGCAAATGGAAGAATCCA+GGG | - | chr2.2:59851023-59851042 | MS.gene01961:CDS | 40.0% | |
| ATTCTGTTCCAAAGGATTGG+TGG | - | chr2.2:59850836-59850855 | MS.gene01961:CDS | 40.0% | |
| CCTTCCTTTACCTGTGATAA+GGG | + | chr2.2:59850461-59850480 | None:intergenic | 40.0% | |
| CTAGAGCTTAATGATATGCC+TGG | - | chr2.2:59850143-59850162 | MS.gene01961:CDS | 40.0% | |
| CTTAGCCCAATTGTCGTAAA+GGG | + | chr2.2:59851587-59851606 | None:intergenic | 40.0% | |
| CTTGCTGAGAGTAGAGAAAA+GGG | - | chr2.2:59852193-59852212 | MS.gene01961:intron | 40.0% | |
| GATAGAGGTTCAGTTTCAGT+TGG | - | chr2.2:59851093-59851112 | MS.gene01961:CDS | 40.0% | |
| GATGGTTATAAGAGGAGTCA+AGG | - | chr2.2:59852270-59852289 | MS.gene01961:intron | 40.0% | |
| GTGGTTACCTTGCATCATAA+AGG | - | chr2.2:59850978-59850997 | MS.gene01961:CDS | 40.0% | |
| GTTCATGCATTCTTGAAGGT+TGG | - | chr2.2:59850327-59850346 | MS.gene01961:intron | 40.0% | |
| TACAAAGTTTCCCCTCTCAA+CGG | + | chr2.2:59850285-59850304 | None:intergenic | 40.0% | |
| TACACCCTTATCACAGGTAA+AGG | - | chr2.2:59850454-59850473 | MS.gene01961:intron | 40.0% | |
| TCTTGCTGAGAGTAGAGAAA+AGG | - | chr2.2:59852192-59852211 | MS.gene01961:intron | 40.0% | |
| TGACCAAGAGAAAGACTCAA+AGG | - | chr2.2:59852024-59852043 | MS.gene01961:intron | 40.0% | |
| TTTACCATGGCTATCTCTTG+TGG | + | chr2.2:59852113-59852132 | None:intergenic | 40.0% | |
| ! | AGAGCATCATTCTGTTCCAA+AGG | - | chr2.2:59850828-59850847 | MS.gene01961:CDS | 40.0% |
| ! | AGAGCATGATGATTTGTACC+AGG | - | chr2.2:59851455-59851474 | MS.gene01961:intron | 40.0% |
| ! | CAACGGACTCATTCATTTGA+AGG | + | chr2.2:59850268-59850287 | None:intergenic | 40.0% |
| ! | CTGTATTGTCAGGGTTTTTG+AGG | - | chr2.2:59851722-59851741 | MS.gene01961:CDS | 40.0% |
| ! | GGCATATCATTAAGCTCTAG+AGG | + | chr2.2:59850143-59850162 | None:intergenic | 40.0% |
| ! | TGCTCTTTTCTGTTGTAACC+GGG | + | chr2.2:59850814-59850833 | None:intergenic | 40.0% |
| !! | AGAAAGTATTCCAGGAAGCA+TGG | - | chr2.2:59852294-59852313 | MS.gene01961:intron | 40.0% |
| !! | CTATCTTCAAGTTGTGGCAA+GGG | - | chr2.2:59851368-59851387 | MS.gene01961:intron | 40.0% |
| !! | GTCAAGGAAGAAAGTATTCC+AGG | - | chr2.2:59852286-59852305 | MS.gene01961:intron | 40.0% |
| !!! | AGGCCACATTTTGAAACAAG+TGG | + | chr2.2:59850077-59850096 | None:intergenic | 40.0% |
| AATGGTCCTACACCTACACT+AGG | - | chr2.2:59850788-59850807 | MS.gene01961:CDS | 45.0% | |
| AGCATGATTCCTGCAGATAG+AGG | - | chr2.2:59851078-59851097 | MS.gene01961:CDS | 45.0% | |
| AGCCATGGTAAAGGATCTCT+TGG | - | chr2.2:59852121-59852140 | MS.gene01961:CDS | 45.0% | |
| AGCTTAGCAGCACAAAGTGA+AGG | + | chr2.2:59850245-59850264 | None:intergenic | 45.0% | |
| ATGAATGAGTCCGTTGAGAG+GGG | - | chr2.2:59850272-59850291 | MS.gene01961:intron | 45.0% | |
| CAGTTGTGGCTGTATTGTCA+GGG | - | chr2.2:59851713-59851732 | MS.gene01961:CDS | 45.0% | |
| CATCGCAAATGGAAGAATCC+AGG | - | chr2.2:59851022-59851041 | MS.gene01961:CDS | 45.0% | |
| CATTTGCGATGCTGAACTTC+CGG | + | chr2.2:59851013-59851032 | None:intergenic | 45.0% | |
| CCCTTATCACAGGTAAAGGA+AGG | - | chr2.2:59850458-59850477 | MS.gene01961:intron | 45.0% | |
| CCTTGCCACAACTTGAAGAT+AGG | + | chr2.2:59851370-59851389 | None:intergenic | 45.0% | |
| GAAACTGAACCTCTATCTGC+AGG | + | chr2.2:59851090-59851109 | None:intergenic | 45.0% | |
| GAGCTTAATGATATGCCTGG+TGG | - | chr2.2:59850146-59850165 | MS.gene01961:CDS | 45.0% | |
| GCCTTCCTTTACCTGTGATA+AGG | + | chr2.2:59850462-59850481 | None:intergenic | 45.0% | |
| GGCACTTCATAAGAGACAGA+TGG | - | chr2.2:59850717-59850736 | MS.gene01961:CDS | 45.0% | |
| GTTCTTCCACCACAGCTAAT+TGG | - | chr2.2:59850928-59850947 | MS.gene01961:CDS | 45.0% | |
| GTTGAGAGGGGAAACTTTGT+AGG | - | chr2.2:59850284-59850303 | MS.gene01961:intron | 45.0% | |
| TCAAAAGCTTCTGATCCACC+AGG | + | chr2.2:59850164-59850183 | None:intergenic | 45.0% | |
| TGCTCTAATCTGCCAATAGC+TGG | + | chr2.2:59851441-59851460 | None:intergenic | 45.0% | |
| TTCTCTACTCTCAGCAAGAG+AGG | + | chr2.2:59852191-59852210 | None:intergenic | 45.0% | |
| ! | GCTGAAAGTGTACCAGCTAT+TGG | - | chr2.2:59851426-59851445 | MS.gene01961:intron | 45.0% |
| !! | CCTATCTTCAAGTTGTGGCA+AGG | - | chr2.2:59851367-59851386 | MS.gene01961:intron | 45.0% |
| AAGAATCTACCCCGGTTCTG+TGG | - | chr2.2:59851290-59851309 | MS.gene01961:intron | 50.0% | |
| CCAAGATTCTCAGACCACTC+TGG | + | chr2.2:59850392-59850411 | None:intergenic | 50.0% | |
| CCACTCTGGTAACTTCTCAG+TGG | + | chr2.2:59850378-59850397 | None:intergenic | 50.0% | |
| CCACTGAGAAGTTACCAGAG+TGG | - | chr2.2:59850375-59850394 | MS.gene01961:intron | 50.0% | |
| CCAGAGTGGTCTGAGAATCT+TGG | - | chr2.2:59850389-59850408 | MS.gene01961:intron | 50.0% | |
| CGGAAGTTCAGCATCGCAAA+TGG | - | chr2.2:59851011-59851030 | MS.gene01961:CDS | 50.0% | |
| GCACTTCAGGGGACAATCTT+TGG | + | chr2.2:59851943-59851962 | None:intergenic | 50.0% | |
| GCAGTTGTGGCTGTATTGTC+AGG | - | chr2.2:59851712-59851731 | MS.gene01961:CDS | 50.0% | |
| GCTTCACCAATTAGCTGTGG+TGG | + | chr2.2:59850937-59850956 | None:intergenic | 50.0% | |
| GGCCAAGAGATCCTTTACCA+TGG | + | chr2.2:59852126-59852145 | None:intergenic | 50.0% | |
| GTTCCTGTTGTCCACAGAAC+CGG | + | chr2.2:59851304-59851323 | None:intergenic | 50.0% | |
| TCCAAGTTCACCATGCTTCC+TGG | + | chr2.2:59852307-59852326 | None:intergenic | 50.0% | |
| TCCTCAGTCCACCAATCCTT+TGG | + | chr2.2:59850847-59850866 | None:intergenic | 50.0% | |
| TTCCTGTTGTCCACAGAACC+GGG | + | chr2.2:59851303-59851322 | None:intergenic | 50.0% | |
| ! | TCCAGGAAGCATGGTGAACT+TGG | - | chr2.2:59852303-59852322 | MS.gene01961:intron | 50.0% |
| !! | AGGATCTCTTGGCCTTGACA+AGG | - | chr2.2:59852132-59852151 | MS.gene01961:CDS | 50.0% |
| !! | CGGAAAAGAAGCGCTTGTGT+GGG | - | chr2.2:59851906-59851925 | MS.gene01961:CDS | 50.0% |
| !! | TCCAAAGGATTGGTGGACTG+AGG | - | chr2.2:59850843-59850862 | MS.gene01961:CDS | 50.0% |
| AGTGGCGTGCAACGTTGCAA+TGG | + | chr2.2:59850360-59850379 | None:intergenic | 55.0% | |
| CCATGGCTATCTCTTGTGGC+AGG | + | chr2.2:59852109-59852128 | None:intergenic | 55.0% | |
| CCTGCCACAAGAGATAGCCA+TGG | - | chr2.2:59852106-59852125 | MS.gene01961:CDS | 55.0% | |
| GCATTCGGACTTGAGCAAGG+CGG | - | chr2.2:59851886-59851905 | MS.gene01961:CDS | 55.0% | |
| GGTGCATTCGGACTTGAGCA+AGG | - | chr2.2:59851883-59851902 | MS.gene01961:CDS | 55.0% | |
| GTTGTAACCGGGCCTAGTGT+AGG | + | chr2.2:59850803-59850822 | None:intergenic | 55.0% | |
| TCCTACACCTACACTAGGCC+CGG | - | chr2.2:59850793-59850812 | MS.gene01961:CDS | 55.0% | |
| TCCTGTTGTCCACAGAACCG+GGG | + | chr2.2:59851302-59851321 | None:intergenic | 55.0% | |
| TCTACACGGAACAAGCTGCC+AGG | - | chr2.2:59849718-59849737 | MS.gene01961:CDS | 55.0% | |
| !! | GCGGAAAAGAAGCGCTTGTG+TGG | - | chr2.2:59851905-59851924 | MS.gene01961:CDS | 55.0% |
| ACCCCGGTTCTGTGGACAAC+AGG | - | chr2.2:59851298-59851317 | MS.gene01961:intron | 60.0% | |
| ACCGGGCCTAGTGTAGGTGT+AGG | + | chr2.2:59850797-59850816 | None:intergenic | 60.0% | |
| ACGGTCTGCGACTGCAGTTG+TGG | - | chr2.2:59851699-59851718 | MS.gene01961:CDS | 60.0% | |
| ACAGCGTGCGCACGCACTTC+AGG | + | chr2.2:59851956-59851975 | None:intergenic | 65.0% | |
| AGCGTGCGCACGCACTTCAG+GGG | + | chr2.2:59851954-59851973 | None:intergenic | 65.0% | |
| CAGCGTGCGCACGCACTTCA+GGG | + | chr2.2:59851955-59851974 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 59849681 | 59852396 | 59849681 | ID=MS.gene01961 |
| chr2.2 | mRNA | 59849681 | 59852396 | 59849681 | ID=MS.gene01961.t1;Parent=MS.gene01961 |
| chr2.2 | exon | 59852338 | 59852396 | 59852338 | ID=MS.gene01961.t1.exon1;Parent=MS.gene01961.t1 |
| chr2.2 | CDS | 59852338 | 59852396 | 59852338 | ID=cds.MS.gene01961.t1;Parent=MS.gene01961.t1 |
| chr2.2 | exon | 59852097 | 59852166 | 59852097 | ID=MS.gene01961.t1.exon2;Parent=MS.gene01961.t1 |
| chr2.2 | CDS | 59852097 | 59852166 | 59852097 | ID=cds.MS.gene01961.t1;Parent=MS.gene01961.t1 |
| chr2.2 | exon | 59851608 | 59852006 | 59851608 | ID=MS.gene01961.t1.exon3;Parent=MS.gene01961.t1 |
| chr2.2 | CDS | 59851608 | 59852006 | 59851608 | ID=cds.MS.gene01961.t1;Parent=MS.gene01961.t1 |
| chr2.2 | exon | 59850580 | 59851293 | 59850580 | ID=MS.gene01961.t1.exon4;Parent=MS.gene01961.t1 |
| chr2.2 | CDS | 59850580 | 59851293 | 59850580 | ID=cds.MS.gene01961.t1;Parent=MS.gene01961.t1 |
| chr2.2 | exon | 59849681 | 59850193 | 59849681 | ID=MS.gene01961.t1.exon5;Parent=MS.gene01961.t1 |
| chr2.2 | CDS | 59849681 | 59850193 | 59849681 | ID=cds.MS.gene01961.t1;Parent=MS.gene01961.t1 |
| Gene Sequence |
| Protein sequence |
