Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29159.t1 | XP_003613103.1 | 99.1 | 636 | 6 | 0 | 1 | 636 | 1 | 636 | 0.00E+00 | 1228.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29159.t1 | Q9C9V6 | 71.8 | 645 | 158 | 10 | 1 | 636 | 1 | 630 | 4.4e-248 | 858.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29159.t1 | G7JXS6 | 99.1 | 636 | 6 | 0 | 1 | 636 | 1 | 636 | 0.0e+00 | 1228.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene29159 | 0.861351 | 1.09E-63 | -1.69E-46 |
| MS.gene052042 | MS.gene29159 | 0.803541 | 3.32E-49 | -1.69E-46 |
| MS.gene053147 | MS.gene29159 | 0.819132 | 1.36E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene29159 | 0.80112 | 1.05E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene29159 | 0.818134 | 2.30E-52 | -1.69E-46 |
| MS.gene054581 | MS.gene29159 | 0.820133 | 8.06E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene29159 | 0.80335 | 3.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95079 | MS.gene29159 | PPI |
| MS.gene003151 | MS.gene29159 | PPI |
| MS.gene43452 | MS.gene29159 | PPI |
| MS.gene01961 | MS.gene29159 | PPI |
| MS.gene012763 | MS.gene29159 | PPI |
| MS.gene042077 | MS.gene29159 | PPI |
| MS.gene048277 | MS.gene29159 | PPI |
| MS.gene02885 | MS.gene29159 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29159.t1 | MTR_5g032780 | 99.057 | 636 | 6 | 0 | 1 | 636 | 1 | 636 | 0.0 | 1299 |
| MS.gene29159.t1 | MTR_8g069330 | 72.144 | 639 | 132 | 10 | 1 | 636 | 1 | 596 | 0.0 | 869 |
| MS.gene29159.t1 | MTR_4g134210 | 48.276 | 522 | 224 | 7 | 1 | 521 | 1 | 477 | 6.26e-162 | 478 |
| MS.gene29159.t1 | MTR_5g015790 | 46.607 | 560 | 249 | 9 | 1 | 551 | 1 | 519 | 6.52e-160 | 473 |
| MS.gene29159.t1 | MTR_1g014070 | 47.059 | 527 | 230 | 10 | 1 | 518 | 1 | 487 | 7.92e-153 | 454 |
| MS.gene29159.t1 | MTR_1g106430 | 43.173 | 542 | 268 | 7 | 1 | 537 | 1 | 507 | 3.61e-147 | 440 |
| MS.gene29159.t1 | MTR_2g027410 | 40.600 | 633 | 285 | 12 | 1 | 610 | 1 | 565 | 1.61e-145 | 434 |
| MS.gene29159.t1 | MTR_4g093850 | 39.560 | 546 | 280 | 8 | 5 | 523 | 23 | 545 | 2.51e-127 | 390 |
| MS.gene29159.t1 | MTR_2g009340 | 39.964 | 553 | 275 | 9 | 5 | 523 | 23 | 552 | 1.02e-126 | 389 |
| MS.gene29159.t1 | MTR_2g027410 | 39.356 | 559 | 250 | 11 | 75 | 610 | 1 | 493 | 2.52e-118 | 362 |
| MS.gene29159.t1 | MTR_2g018750 | 40.226 | 532 | 279 | 9 | 1 | 523 | 1 | 502 | 6.18e-115 | 357 |
| MS.gene29159.t1 | MTR_1g064360 | 38.432 | 523 | 282 | 7 | 1 | 523 | 1 | 483 | 1.42e-112 | 349 |
| MS.gene29159.t1 | MTR_1g094850 | 39.587 | 533 | 277 | 11 | 1 | 523 | 1 | 498 | 2.66e-112 | 350 |
| MS.gene29159.t1 | MTR_5g016060 | 37.430 | 537 | 240 | 10 | 22 | 529 | 36 | 505 | 1.34e-109 | 343 |
| MS.gene29159.t1 | MTR_8g090220 | 35.769 | 520 | 260 | 7 | 16 | 515 | 42 | 507 | 3.35e-108 | 336 |
| MS.gene29159.t1 | MTR_8g090220 | 34.783 | 552 | 275 | 8 | 16 | 536 | 42 | 539 | 1.70e-107 | 338 |
| MS.gene29159.t1 | MTR_8g078900 | 38.417 | 518 | 264 | 9 | 28 | 517 | 22 | 512 | 4.90e-107 | 338 |
| MS.gene29159.t1 | MTR_2g084595 | 35.924 | 579 | 325 | 10 | 24 | 591 | 21 | 564 | 1.39e-106 | 336 |
| MS.gene29159.t1 | MTR_8g078900 | 38.659 | 507 | 256 | 9 | 39 | 517 | 3 | 482 | 1.06e-104 | 331 |
| MS.gene29159.t1 | MTR_8g078900 | 40.175 | 458 | 237 | 7 | 70 | 517 | 42 | 472 | 1.84e-102 | 325 |
| MS.gene29159.t1 | MTR_7g073980 | 37.924 | 501 | 268 | 9 | 22 | 519 | 29 | 489 | 1.21e-101 | 323 |
| MS.gene29159.t1 | MTR_4g022330 | 35.965 | 570 | 303 | 11 | 22 | 585 | 30 | 543 | 1.66e-97 | 311 |
| MS.gene29159.t1 | MTR_4g093850 | 36.049 | 491 | 264 | 7 | 5 | 468 | 23 | 490 | 2.77e-96 | 306 |
| MS.gene29159.t1 | MTR_4g095430 | 36.400 | 500 | 271 | 7 | 23 | 519 | 10 | 465 | 9.79e-94 | 301 |
| MS.gene29159.t1 | MTR_1g088885 | 37.100 | 531 | 272 | 14 | 12 | 525 | 18 | 503 | 4.86e-93 | 300 |
| MS.gene29159.t1 | MTR_2g048390 | 37.214 | 481 | 260 | 9 | 1 | 468 | 1 | 452 | 2.68e-90 | 288 |
| MS.gene29159.t1 | MTR_7g108290 | 35.714 | 588 | 315 | 14 | 12 | 584 | 18 | 557 | 9.50e-90 | 293 |
| MS.gene29159.t1 | MTR_3g062540 | 34.449 | 508 | 274 | 8 | 21 | 526 | 19 | 469 | 4.46e-87 | 283 |
| MS.gene29159.t1 | MTR_2g084595 | 36.062 | 452 | 257 | 8 | 24 | 469 | 21 | 446 | 9.19e-83 | 268 |
| MS.gene29159.t1 | MTR_5g016060 | 35.683 | 454 | 198 | 9 | 105 | 529 | 3 | 391 | 4.78e-82 | 268 |
| MS.gene29159.t1 | MTR_8g078900 | 34.177 | 474 | 257 | 8 | 23 | 468 | 17 | 463 | 1.93e-80 | 262 |
| MS.gene29159.t1 | MTR_3g062540 | 33.954 | 483 | 260 | 8 | 46 | 526 | 2 | 427 | 1.08e-78 | 259 |
| MS.gene29159.t1 | MTR_5g075640 | 33.861 | 505 | 282 | 8 | 22 | 524 | 21 | 475 | 2.45e-77 | 257 |
| MS.gene29159.t1 | MTR_8g078900 | 35.941 | 409 | 225 | 6 | 70 | 468 | 42 | 423 | 7.85e-76 | 249 |
| MS.gene29159.t1 | MTR_1g082690 | 31.452 | 496 | 262 | 10 | 27 | 518 | 59 | 480 | 2.12e-72 | 243 |
| MS.gene29159.t1 | MTR_5g075640 | 33.264 | 481 | 269 | 7 | 46 | 524 | 2 | 432 | 3.60e-70 | 237 |
| MS.gene29159.t1 | MTR_4g011530 | 37.864 | 309 | 151 | 4 | 211 | 519 | 46 | 313 | 2.82e-65 | 221 |
| MS.gene29159.t1 | MTR_2g102730 | 38.835 | 309 | 150 | 4 | 211 | 519 | 24 | 293 | 5.34e-62 | 212 |
| MS.gene29159.t1 | MTR_4g045767 | 29.295 | 454 | 250 | 13 | 74 | 519 | 52 | 442 | 1.94e-47 | 175 |
| MS.gene29159.t1 | MTR_4g074190 | 27.063 | 521 | 302 | 12 | 27 | 523 | 4 | 470 | 4.83e-45 | 169 |
| MS.gene29159.t1 | MTR_4g074190 | 27.311 | 476 | 270 | 10 | 70 | 523 | 3 | 424 | 3.00e-43 | 162 |
| MS.gene29159.t1 | MTR_1g035720 | 25.832 | 511 | 281 | 12 | 64 | 541 | 36 | 481 | 3.12e-41 | 157 |
| MS.gene29159.t1 | MTR_4g074190 | 26.282 | 468 | 267 | 12 | 27 | 470 | 4 | 417 | 1.70e-35 | 139 |
| MS.gene29159.t1 | MTR_2g010890 | 25.298 | 419 | 245 | 10 | 94 | 505 | 1 | 358 | 3.30e-21 | 97.4 |
| MS.gene29159.t1 | MTR_1g105870 | 32.161 | 199 | 119 | 4 | 33 | 230 | 38 | 221 | 5.35e-21 | 93.6 |
| MS.gene29159.t1 | MTR_4g080720 | 64.912 | 57 | 20 | 0 | 1 | 57 | 1 | 57 | 1.43e-19 | 83.6 |
| MS.gene29159.t1 | MTR_2g048375 | 36.190 | 105 | 50 | 4 | 485 | 586 | 1 | 91 | 8.71e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29159.t1 | AT1G67900 | 73.023 | 645 | 150 | 11 | 1 | 636 | 1 | 630 | 0.0 | 865 |
| MS.gene29159.t1 | AT1G67900 | 73.023 | 645 | 150 | 11 | 1 | 636 | 1 | 630 | 0.0 | 865 |
| MS.gene29159.t1 | AT1G67900 | 73.023 | 645 | 150 | 11 | 1 | 636 | 1 | 630 | 0.0 | 865 |
| MS.gene29159.t1 | AT1G67900 | 73.023 | 645 | 150 | 11 | 1 | 636 | 1 | 630 | 0.0 | 865 |
| MS.gene29159.t1 | AT1G67900 | 73.023 | 645 | 150 | 11 | 1 | 636 | 1 | 630 | 0.0 | 865 |
| MS.gene29159.t1 | AT1G67900 | 73.023 | 645 | 150 | 11 | 1 | 636 | 1 | 630 | 0.0 | 865 |
| MS.gene29159.t1 | AT3G26490 | 49.085 | 656 | 244 | 15 | 1 | 635 | 1 | 587 | 0.0 | 561 |
| MS.gene29159.t1 | AT3G26490 | 49.085 | 656 | 244 | 15 | 1 | 635 | 1 | 587 | 0.0 | 561 |
| MS.gene29159.t1 | AT3G26490 | 49.085 | 656 | 244 | 15 | 1 | 635 | 1 | 587 | 0.0 | 561 |
| MS.gene29159.t1 | AT3G26490 | 53.061 | 490 | 176 | 13 | 1 | 469 | 1 | 457 | 1.07e-160 | 471 |
| MS.gene29159.t1 | AT2G14820 | 45.149 | 536 | 247 | 8 | 1 | 528 | 1 | 497 | 7.59e-152 | 452 |
| MS.gene29159.t1 | AT2G14820 | 45.149 | 536 | 247 | 8 | 1 | 528 | 1 | 497 | 7.59e-152 | 452 |
| MS.gene29159.t1 | AT5G47800 | 42.964 | 533 | 258 | 7 | 1 | 530 | 1 | 490 | 8.03e-147 | 437 |
| MS.gene29159.t1 | AT5G47800 | 42.964 | 533 | 258 | 7 | 1 | 530 | 1 | 490 | 8.03e-147 | 437 |
| MS.gene29159.t1 | AT5G47800 | 42.964 | 533 | 258 | 7 | 1 | 530 | 1 | 490 | 8.03e-147 | 437 |
| MS.gene29159.t1 | AT5G47800 | 42.964 | 533 | 258 | 7 | 1 | 530 | 114 | 603 | 5.86e-145 | 436 |
| MS.gene29159.t1 | AT5G67440 | 43.619 | 525 | 247 | 8 | 1 | 522 | 1 | 479 | 7.02e-143 | 428 |
| MS.gene29159.t1 | AT5G67440 | 43.619 | 525 | 247 | 8 | 1 | 522 | 1 | 479 | 7.02e-143 | 428 |
| MS.gene29159.t1 | AT4G37590 | 40.504 | 595 | 262 | 12 | 1 | 582 | 1 | 516 | 1.80e-141 | 424 |
| MS.gene29159.t1 | AT4G31820 | 42.344 | 529 | 242 | 10 | 1 | 523 | 1 | 472 | 3.03e-132 | 400 |
| MS.gene29159.t1 | AT5G67440 | 43.595 | 484 | 225 | 7 | 41 | 522 | 5 | 442 | 4.80e-128 | 388 |
| MS.gene29159.t1 | AT2G23050 | 41.588 | 529 | 228 | 11 | 1 | 523 | 1 | 454 | 1.60e-127 | 385 |
| MS.gene29159.t1 | AT5G64330 | 36.498 | 611 | 314 | 9 | 7 | 549 | 33 | 637 | 3.28e-122 | 377 |
| MS.gene29159.t1 | AT5G64330 | 35.759 | 646 | 333 | 11 | 7 | 584 | 33 | 664 | 3.68e-122 | 380 |
| MS.gene29159.t1 | AT5G64330 | 37.133 | 579 | 290 | 9 | 39 | 549 | 6 | 578 | 7.65e-117 | 361 |
| MS.gene29159.t1 | AT4G31820 | 41.597 | 476 | 216 | 9 | 53 | 523 | 1 | 419 | 1.89e-115 | 355 |
| MS.gene29159.t1 | AT1G30440 | 38.879 | 535 | 292 | 9 | 1 | 523 | 1 | 512 | 1.74e-114 | 357 |
| MS.gene29159.t1 | AT5G03250 | 37.782 | 532 | 296 | 6 | 1 | 523 | 1 | 506 | 8.81e-114 | 353 |
| MS.gene29159.t1 | AT5G13600 | 40.189 | 530 | 277 | 10 | 1 | 523 | 1 | 497 | 3.74e-111 | 346 |
| MS.gene29159.t1 | AT5G67385 | 38.976 | 508 | 258 | 8 | 15 | 519 | 16 | 474 | 2.61e-106 | 334 |
| MS.gene29159.t1 | AT5G48800 | 38.856 | 507 | 250 | 9 | 22 | 523 | 37 | 488 | 2.45e-98 | 313 |
| MS.gene29159.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 6.56e-97 | 308 |
| MS.gene29159.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 6.56e-97 | 308 |
| MS.gene29159.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 6.56e-97 | 308 |
| MS.gene29159.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 6.56e-97 | 308 |
| MS.gene29159.t1 | AT5G66560 | 36.397 | 544 | 256 | 10 | 28 | 517 | 21 | 528 | 2.36e-93 | 302 |
| MS.gene29159.t1 | AT5G10250 | 34.357 | 521 | 259 | 8 | 22 | 519 | 46 | 506 | 1.03e-92 | 299 |
| MS.gene29159.t1 | AT3G44820 | 33.786 | 589 | 330 | 15 | 26 | 591 | 23 | 574 | 5.23e-92 | 298 |
| MS.gene29159.t1 | AT3G08570 | 37.059 | 510 | 277 | 11 | 13 | 519 | 22 | 490 | 1.06e-91 | 296 |
| MS.gene29159.t1 | AT5G66560 | 36.398 | 533 | 249 | 10 | 39 | 517 | 3 | 499 | 1.30e-91 | 296 |
| MS.gene29159.t1 | AT5G66560 | 39.130 | 460 | 232 | 9 | 70 | 517 | 66 | 489 | 1.87e-91 | 296 |
| MS.gene29159.t1 | AT1G03010 | 37.773 | 503 | 273 | 12 | 24 | 519 | 7 | 476 | 2.81e-90 | 292 |
| MS.gene29159.t1 | AT1G03010 | 37.403 | 516 | 281 | 13 | 11 | 519 | 22 | 502 | 9.03e-90 | 291 |
| MS.gene29159.t1 | AT1G03010 | 37.773 | 503 | 273 | 12 | 24 | 519 | 34 | 503 | 9.65e-90 | 291 |
| MS.gene29159.t1 | AT5G10250 | 34.442 | 511 | 257 | 9 | 22 | 519 | 46 | 491 | 1.19e-89 | 291 |
| MS.gene29159.t1 | AT2G23050 | 40.436 | 413 | 169 | 8 | 113 | 523 | 1 | 338 | 2.42e-87 | 277 |
| MS.gene29159.t1 | AT3G49970 | 36.344 | 465 | 216 | 11 | 39 | 502 | 7 | 392 | 7.95e-87 | 280 |
| MS.gene29159.t1 | AT3G49970 | 36.344 | 465 | 216 | 11 | 39 | 502 | 7 | 392 | 7.95e-87 | 280 |
| MS.gene29159.t1 | AT3G08660 | 34.808 | 520 | 257 | 12 | 8 | 519 | 21 | 466 | 1.19e-83 | 274 |
| MS.gene29159.t1 | AT2G47860 | 35.141 | 498 | 283 | 10 | 24 | 519 | 35 | 494 | 8.79e-81 | 268 |
| MS.gene29159.t1 | AT2G30520 | 33.002 | 503 | 283 | 10 | 21 | 523 | 25 | 473 | 2.27e-79 | 263 |
| MS.gene29159.t1 | AT3G50840 | 35.119 | 504 | 275 | 8 | 28 | 529 | 18 | 471 | 1.27e-78 | 260 |
| MS.gene29159.t1 | AT5G03250 | 36.429 | 420 | 232 | 6 | 113 | 523 | 1 | 394 | 1.15e-76 | 253 |
| MS.gene29159.t1 | AT2G47860 | 33.270 | 526 | 278 | 11 | 24 | 519 | 35 | 517 | 1.36e-75 | 254 |
| MS.gene29159.t1 | AT3G08660 | 34.858 | 459 | 225 | 10 | 69 | 519 | 14 | 406 | 8.44e-74 | 246 |
| MS.gene29159.t1 | AT2G30520 | 33.260 | 454 | 251 | 8 | 70 | 523 | 24 | 425 | 4.97e-73 | 245 |
| MS.gene29159.t1 | AT2G30520 | 33.260 | 454 | 251 | 8 | 70 | 523 | 24 | 425 | 4.97e-73 | 245 |
| MS.gene29159.t1 | AT3G50840 | 34.433 | 485 | 266 | 8 | 47 | 529 | 1 | 435 | 4.75e-72 | 242 |
| MS.gene29159.t1 | AT3G50840 | 34.433 | 485 | 266 | 8 | 47 | 529 | 1 | 435 | 4.75e-72 | 242 |
| MS.gene29159.t1 | AT5G66560 | 32.866 | 499 | 239 | 10 | 28 | 469 | 21 | 480 | 2.37e-66 | 225 |
| MS.gene29159.t1 | AT1G52770 | 39.355 | 310 | 153 | 4 | 211 | 519 | 28 | 303 | 1.63e-63 | 217 |
| MS.gene29159.t1 | AT3G08660 | 31.770 | 469 | 242 | 12 | 8 | 470 | 21 | 417 | 1.90e-61 | 211 |
| MS.gene29159.t1 | AT3G15570 | 37.377 | 305 | 152 | 4 | 220 | 519 | 38 | 308 | 1.51e-58 | 204 |
| MS.gene29159.t1 | AT2G47860 | 32.662 | 447 | 261 | 10 | 24 | 468 | 35 | 443 | 1.38e-57 | 201 |
| MS.gene29159.t1 | AT2G47860 | 32.850 | 414 | 233 | 9 | 113 | 519 | 1 | 376 | 3.49e-54 | 193 |
| MS.gene29159.t1 | AT2G47860 | 32.850 | 414 | 233 | 9 | 113 | 519 | 1 | 376 | 3.49e-54 | 193 |
| MS.gene29159.t1 | AT2G47860 | 30.998 | 471 | 262 | 11 | 24 | 469 | 35 | 467 | 7.24e-53 | 189 |
| MS.gene29159.t1 | AT3G19850 | 25.895 | 475 | 264 | 8 | 69 | 517 | 51 | 463 | 2.25e-48 | 178 |
| MS.gene29159.t1 | AT5G48130 | 26.049 | 453 | 269 | 9 | 70 | 517 | 76 | 467 | 4.05e-42 | 161 |
| MS.gene29159.t1 | AT3G03510 | 30.000 | 450 | 207 | 12 | 82 | 519 | 8 | 361 | 8.49e-42 | 157 |
| MS.gene29159.t1 | AT1G50280 | 24.569 | 464 | 276 | 8 | 70 | 513 | 18 | 427 | 5.80e-40 | 153 |
| MS.gene29159.t1 | AT1G50280 | 24.569 | 464 | 276 | 8 | 70 | 513 | 51 | 460 | 6.12e-40 | 154 |
| MS.gene29159.t1 | AT5G17580 | 27.567 | 526 | 311 | 11 | 8 | 526 | 2 | 464 | 7.76e-39 | 151 |
| MS.gene29159.t1 | AT5G17580 | 27.734 | 512 | 300 | 11 | 22 | 526 | 1 | 449 | 2.79e-38 | 149 |
| MS.gene29159.t1 | AT3G22104 | 25.567 | 485 | 279 | 13 | 28 | 502 | 6 | 418 | 2.37e-31 | 128 |
| MS.gene29159.t1 | AT3G22104 | 24.939 | 413 | 231 | 10 | 98 | 502 | 2 | 343 | 2.57e-22 | 100 |
| MS.gene29159.t1 | AT3G22104 | 24.939 | 413 | 231 | 10 | 98 | 502 | 2 | 343 | 2.57e-22 | 100 |
| MS.gene29159.t1 | AT3G22104 | 24.939 | 413 | 231 | 10 | 98 | 502 | 2 | 343 | 2.57e-22 | 100 |
| MS.gene29159.t1 | AT3G49900 | 38.144 | 97 | 53 | 4 | 423 | 517 | 214 | 305 | 6.74e-11 | 65.5 |
Find 111 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTAGCATAGACCTTTAT+TGG | 0.142674 | 5.3:+21894412 | MS.gene29159:CDS |
| GAGGATAATTGGAGTGTTTC+TGG | 0.144528 | 5.3:+21896514 | MS.gene29159:CDS |
| CTTCTTTCTATTTCCGTTCT+TGG | 0.164934 | 5.3:-21894532 | None:intergenic |
| CTTTCACTCTTGTTCAGTTC+TGG | 0.171118 | 5.3:-21896241 | None:intergenic |
| TTTCCGTTCTTGGAAATATT+TGG | 0.180699 | 5.3:-21894522 | None:intergenic |
| AATCAGGAAGTTGGACTATT+TGG | 0.186197 | 5.3:-21893963 | None:intergenic |
| CATGATGAATTTGATGAAAA+TGG | 0.218084 | 5.3:+21896592 | MS.gene29159:CDS |
| ACTTGAACAACAACTCTTAA+AGG | 0.232478 | 5.3:-21896343 | None:intergenic |
| TCCAAGTTTCATAAACTTCA+TGG | 0.285144 | 5.3:-21893348 | None:intergenic |
| AGAGTTGAAGACTTTGATTT+TGG | 0.291628 | 5.3:-21896547 | None:intergenic |
| TTTCAACTTCTTCAGTCATT+TGG | 0.299710 | 5.3:-21894095 | None:intergenic |
| TGATCATATCTTGCAAATTC+TGG | 0.304119 | 5.3:-21895107 | None:intergenic |
| AGCTTGCTTCCAACCGAAAA+AGG | 0.306769 | 5.3:+21894642 | MS.gene29159:CDS |
| GTATTCAAGGTGAGGATAAT+TGG | 0.310231 | 5.3:+21896503 | MS.gene29159:CDS |
| TGAAGAAGCATTGAGAATAT+TGG | 0.313880 | 5.3:-21894706 | None:intergenic |
| TCAAAAGTCTTCAACGATCT+TGG | 0.319797 | 5.3:-21894903 | None:intergenic |
| TTCAAAGCATAGGCTTCTAT+TGG | 0.325252 | 5.3:+21894608 | MS.gene29159:CDS |
| ATGACTGAAGAAGTTGAAAA+AGG | 0.332313 | 5.3:+21894099 | MS.gene29159:CDS |
| TCTACACTTCAGAAGCTATA+AGG | 0.334248 | 5.3:+21893387 | MS.gene29159:CDS |
| CTATCATTGTTCTCCAATAA+AGG | 0.335482 | 5.3:-21894425 | None:intergenic |
| TGAAAATTTATGCATCTAGA+TGG | 0.337434 | 5.3:+21894496 | MS.gene29159:CDS |
| TCTGAAGTGTAGAAAGTATC+TGG | 0.344925 | 5.3:-21893377 | None:intergenic |
| GCCATGAAGTTTATGAAACT+TGG | 0.345527 | 5.3:+21893347 | None:intergenic |
| CTACAAAAGCGTTGCATTTG+TGG | 0.358213 | 5.3:+21894202 | MS.gene29159:CDS |
| TGTAGTCTGAAGACTTACTA+TGG | 0.359741 | 5.3:-21894184 | None:intergenic |
| TCCACTCCACCCGGAAAATC+AGG | 0.369267 | 5.3:-21893979 | None:intergenic |
| TGAAAGAAGGCGGTCGCGTT+CGG | 0.375582 | 5.3:+21894923 | MS.gene29159:CDS |
| TGTGACAAACTCACCTTTGT+AGG | 0.375606 | 5.3:-21894288 | None:intergenic |
| TCTTTGCAGGCATAAGCATT+TGG | 0.386345 | 5.3:-21893905 | None:intergenic |
| TTGGTAAATGATGATGGAAT+TGG | 0.390964 | 5.3:+21896616 | MS.gene29159:CDS |
| ATTCTGAGCATAATCTTTGC+AGG | 0.392741 | 5.3:-21893918 | None:intergenic |
| TGAGTTGGTGATGACTATAT+TGG | 0.420160 | 5.3:+21894839 | MS.gene29159:CDS |
| GTGATCTCATAATTCAAGTA+AGG | 0.425248 | 5.3:+21893536 | MS.gene29159:CDS |
| TGCTTCTTCATCTTCAAAGA+TGG | 0.426814 | 5.3:+21894719 | MS.gene29159:CDS |
| GCATTTGTGGTCCGAAGACT+TGG | 0.427763 | 5.3:+21894215 | MS.gene29159:CDS |
| CTTGAACAACAACTCTTAAA+GGG | 0.429190 | 5.3:-21896342 | None:intergenic |
| AAGAAGAGTAGGACTTCAAT+TGG | 0.440636 | 5.3:+21894749 | MS.gene29159:CDS |
| TGTCACATAGTCATTCTAGA+AGG | 0.441367 | 5.3:+21894304 | MS.gene29159:CDS |
| AGCTCTACTACAAGTATTCA+AGG | 0.447165 | 5.3:+21896490 | MS.gene29159:CDS |
| GCATCACCAATGAGATTTGA+AGG | 0.447840 | 5.3:-21894471 | None:intergenic |
| GGCATAAGCATTTGGACAGC+AGG | 0.452818 | 5.3:-21893897 | None:intergenic |
| ACTTGTGGATAGATACCTTC+AGG | 0.457987 | 5.3:+21895025 | MS.gene29159:CDS |
| TTGTGTAGGAAGAGCACAAA+TGG | 0.459576 | 5.3:-21896659 | None:intergenic |
| TGAATTTGATGAAAATGGTT+TGG | 0.459746 | 5.3:+21896597 | MS.gene29159:CDS |
| CAAGCTAGAGCAGCATCATC+TGG | 0.460416 | 5.3:+21896379 | MS.gene29159:CDS |
| ATTTGGTGATGAGATGAATC+AGG | 0.463874 | 5.3:-21893946 | None:intergenic |
| TACCTTGAGATAAATGTCAA+TGG | 0.464242 | 5.3:-21895147 | None:intergenic |
| ACAATGATAGCAATCAAATC+TGG | 0.464906 | 5.3:+21894438 | MS.gene29159:CDS |
| AAGGTTCCTTCAAATCTCAT+TGG | 0.467784 | 5.3:+21894465 | MS.gene29159:CDS |
| TTCAATTCTTGCATCCTCCA+TGG | 0.467888 | 5.3:+21894150 | MS.gene29159:CDS |
| ATGCTTTGAAGTTATTTCGC+TGG | 0.473982 | 5.3:-21894595 | None:intergenic |
| AACGATCTTGGAGGGCTAGT+TGG | 0.475483 | 5.3:-21894891 | None:intergenic |
| GAAAGTTTGAGAATCAAATC+AGG | 0.487700 | 5.3:+21894357 | MS.gene29159:CDS |
| GCTGGTAATTCCCAAGTCTT+CGG | 0.495511 | 5.3:-21894226 | None:intergenic |
| TTGGAACATTTCATGTTACA+AGG | 0.498296 | 5.3:+21894858 | MS.gene29159:CDS |
| AGAATCAAATCAGGAAGTAA+AGG | 0.499839 | 5.3:+21894366 | MS.gene29159:CDS |
| CAAAAGAAAGCTACAAGAAA+CGG | 0.503747 | 5.3:-21894667 | None:intergenic |
| AATGGTTTGGTAAATGATGA+TGG | 0.512979 | 5.3:+21896610 | MS.gene29159:CDS |
| AAAGTCTTCAACGATCTTGG+AGG | 0.513419 | 5.3:-21894900 | None:intergenic |
| ATTCTTGCATCCTCCATGGT+TGG | 0.519380 | 5.3:+21894154 | MS.gene29159:CDS |
| CACCCGGAAAATCAGGAAGT+TGG | 0.520809 | 5.3:-21893972 | None:intergenic |
| ATTGAAAGTGGCAAAACTTG+TGG | 0.529222 | 5.3:+21895010 | MS.gene29159:CDS |
| GCGAAATAACTTCAAAGCAT+AGG | 0.531559 | 5.3:+21894598 | MS.gene29159:CDS |
| ATGGAATTAGCAAGAAGAGT+AGG | 0.536555 | 5.3:+21894738 | MS.gene29159:CDS |
| TTGCATCCTCCATGGTTGGA+AGG | 0.536990 | 5.3:+21894158 | MS.gene29159:CDS |
| CTTGCAGCTACAATGTTGTA+AGG | 0.538418 | 5.3:-21894054 | None:intergenic |
| AATAGTTTCAATGCATCTGC+TGG | 0.540399 | 5.3:-21894244 | None:intergenic |
| ACATAGTTCAAAATTGAAAG+TGG | 0.541920 | 5.3:+21894998 | MS.gene29159:CDS |
| TTGAATTACAAGAGAGTAGG+AGG | 0.548073 | 5.3:+21894961 | MS.gene29159:CDS |
| ACTTTGAATTACAAGAGAGT+AGG | 0.548128 | 5.3:+21894958 | MS.gene29159:CDS |
| GATCTTGGAGGGCTAGTTGG+TGG | 0.550378 | 5.3:-21894888 | None:intergenic |
| AGCCATTGACATTTATCTCA+AGG | 0.550508 | 5.3:+21895145 | MS.gene29159:CDS |
| TGATCTCATAATTCAAGTAA+GGG | 0.550839 | 5.3:+21893537 | MS.gene29159:CDS |
| AATGGAAGCGTGCATGCATG+CGG | 0.551671 | 5.3:+21896303 | MS.gene29159:CDS |
| GTGACAAACTCACCTTTGTA+GGG | 0.551753 | 5.3:-21894287 | None:intergenic |
| TTGTGTGCTAAGTTCTGCTA+TGG | 0.551870 | 5.3:+21894012 | MS.gene29159:CDS |
| AAACTTGATTCACAAGCTTG+AGG | 0.555629 | 5.3:+21894122 | MS.gene29159:CDS |
| TTACCAAATATTTCCAAGAA+CGG | 0.560310 | 5.3:+21894519 | MS.gene29159:CDS |
| CAGAACTGAACAAGAGTGAA+AGG | 0.560948 | 5.3:+21896242 | MS.gene29159:CDS |
| TGAACTATGTGATGCTGAAG+AGG | 0.563744 | 5.3:-21894985 | None:intergenic |
| GCATAAGCATTTGGACAGCA+GGG | 0.571856 | 5.3:-21893896 | None:intergenic |
| TCAAATGCTTCCACTCCACC+CGG | 0.574131 | 5.3:-21893988 | None:intergenic |
| ATAGTCATTCTAGAAGGGTG+AGG | 0.577522 | 5.3:+21894310 | MS.gene29159:CDS |
| CATCTCTTGCAACTTCCTGA+AGG | 0.580853 | 5.3:-21895040 | None:intergenic |
| CATTTGTGGTCCGAAGACTT+GGG | 0.581251 | 5.3:+21894216 | MS.gene29159:CDS |
| AAGAGTAGGACTTCAATTGG+AGG | 0.582077 | 5.3:+21894752 | MS.gene29159:CDS |
| ATCAGGAAGTAAAGGATGGT+GGG | 0.583008 | 5.3:+21894374 | MS.gene29159:CDS |
| AGCAATCAAATCTGGTGGCA+AGG | 0.587341 | 5.3:+21894446 | MS.gene29159:CDS |
| CTATGGTGTCCTTCCAACCA+TGG | 0.587903 | 5.3:-21894167 | None:intergenic |
| GTCACATAGTCATTCTAGAA+GGG | 0.589043 | 5.3:+21894305 | MS.gene29159:CDS |
| GTCTGAGTCTAACTCAGACT+CGG | 0.598165 | 5.3:+21894572 | MS.gene29159:CDS |
| TAGTCATTCTAGAAGGGTGA+GGG | 0.603321 | 5.3:+21894311 | MS.gene29159:CDS |
| AATCAGGAAGTAAAGGATGG+TGG | 0.603373 | 5.3:+21894373 | MS.gene29159:CDS |
| TACTACAAGTATTCAAGGTG+AGG | 0.607107 | 5.3:+21896495 | MS.gene29159:CDS |
| AGTCTTGAGCCACCCTACAA+AGG | 0.609787 | 5.3:+21894275 | MS.gene29159:CDS |
| TCAAATCAGGAAGTAAAGGA+TGG | 0.616909 | 5.3:+21894370 | MS.gene29159:CDS |
| AAGTCTTCAACGATCTTGGA+GGG | 0.617841 | 5.3:-21894899 | None:intergenic |
| TACAGTCTATGATGTTGAGT+TGG | 0.618402 | 5.3:+21894824 | MS.gene29159:CDS |
| ATGATAGCAATCAAATCTGG+TGG | 0.634663 | 5.3:+21894441 | MS.gene29159:CDS |
| GCTAGAGCAGCATCATCTGG+TGG | 0.637791 | 5.3:+21896382 | MS.gene29159:CDS |
| GATCTCATAATTCAAGTAAG+GGG | 0.642036 | 5.3:+21893538 | MS.gene29159:CDS |
| GTCTGAGTTAGACTCAGACT+CGG | 0.643618 | 5.3:-21894568 | None:intergenic |
| AAAGCATTGCTTACAACACA+TGG | 0.648620 | 5.3:+21896433 | MS.gene29159:CDS |
| CATAAGCATTTGGACAGCAG+GGG | 0.670987 | 5.3:-21893895 | None:intergenic |
| TCTAAGAATGAAGCTTGCTG+AGG | 0.674255 | 5.3:+21896567 | MS.gene29159:CDS |
| ACAAACTCACCTTTGTAGGG+TGG | 0.674969 | 5.3:-21894284 | None:intergenic |
| TCATTTGTATAAGAAAGTGA+AGG | 0.677583 | 5.3:-21894801 | None:intergenic |
| AAGTAGATATCTTCTTCACA+AGG | 0.678976 | 5.3:+21893561 | MS.gene29159:CDS |
| TGGTGTCCTTCCAACCATGG+AGG | 0.717381 | 5.3:-21894164 | None:intergenic |
| TGGTGATGAGATGAATCAGG+AGG | 0.725233 | 5.3:-21893943 | None:intergenic |
| TATTAACAGATCATTCACTG+TGG | 0.785745 | 5.3:-21894778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATATACTTATGA+AGG | - | chr5.3:21893831-21893850 | None:intergenic | 10.0% |
| !!! | AAATACAATAAACATTTTAT+AGG | - | chr5.3:21895182-21895201 | None:intergenic | 10.0% |
| !!! | AAGTATATAATTTTTTACTT+TGG | + | chr5.3:21893835-21893854 | MS.gene29159:intron | 10.0% |
| !!! | AGGTTTTTTTATTTTTATTT+TGG | + | chr5.3:21895819-21895838 | MS.gene29159:intron | 10.0% |
| !! | AAAAACATGTAAAAAAAAAG+TGG | + | chr5.3:21895388-21895407 | MS.gene29159:intron | 15.0% |
| !!! | AATTTACTAAGCATTTTTTT+AGG | - | chr5.3:21896685-21896704 | None:intergenic | 15.0% |
| !!! | ATTTTTATCAAGGTATAAAA+TGG | - | chr5.3:21895217-21895236 | None:intergenic | 15.0% |
| !!! | TTAATTTAAGTTAGTTTTCA+AGG | + | chr5.3:21895861-21895880 | MS.gene29159:intron | 15.0% |
| !!! | TTATGTGTGTATTTTTTTAT+AGG | - | chr5.3:21895369-21895388 | None:intergenic | 15.0% |
| !! | AAAAAATGCTTAGTAAATTG+TGG | + | chr5.3:21896686-21896705 | MS.gene29159:CDS | 20.0% |
| !! | AAATAGAGTGAATTCATAAA+TGG | - | chr5.3:21895744-21895763 | None:intergenic | 20.0% |
| !! | AGATAATTTCATAACTCATT+TGG | + | chr5.3:21895598-21895617 | MS.gene29159:intron | 20.0% |
| !! | ATATAGGACTAATAAAAACT+AGG | + | chr5.3:21895959-21895978 | MS.gene29159:intron | 20.0% |
| !! | CAAAATTAAACAATCCAAAA+AGG | - | chr5.3:21893463-21893482 | None:intergenic | 20.0% |
| !!! | ATACTTCACTTTCAAATTTT+AGG | + | chr5.3:21895424-21895443 | MS.gene29159:intron | 20.0% |
| !!! | TTGAATAAGACGATATTTTA+AGG | - | chr5.3:21895487-21895506 | None:intergenic | 20.0% |
| ! | ACATAGTTCAAAATTGAAAG+TGG | + | chr5.3:21894998-21895017 | MS.gene29159:CDS | 25.0% |
| ! | ACTAATATGACACATTGATA+CGG | - | chr5.3:21893760-21893779 | None:intergenic | 25.0% |
| ! | AGTCCTATATTATTTGAACA+TGG | - | chr5.3:21895949-21895968 | None:intergenic | 25.0% |
| ! | CATGATGAATTTGATGAAAA+TGG | + | chr5.3:21896592-21896611 | MS.gene29159:CDS | 25.0% |
| ! | CTACCATGTTCAAATAATAT+AGG | + | chr5.3:21895943-21895962 | MS.gene29159:intron | 25.0% |
| ! | CTTGATAAAAATATCTCAGA+TGG | + | chr5.3:21895225-21895244 | MS.gene29159:intron | 25.0% |
| ! | TCATTTGTATAAGAAAGTGA+AGG | - | chr5.3:21894804-21894823 | None:intergenic | 25.0% |
| ! | TGAAAATTTATGCATCTAGA+TGG | + | chr5.3:21894496-21894515 | MS.gene29159:CDS | 25.0% |
| ! | TGAATTTGATGAAAATGGTT+TGG | + | chr5.3:21896597-21896616 | MS.gene29159:CDS | 25.0% |
| ! | TGATCTCATAATTCAAGTAA+GGG | + | chr5.3:21893537-21893556 | MS.gene29159:CDS | 25.0% |
| ! | TTACCAAATATTTCCAAGAA+CGG | + | chr5.3:21894519-21894538 | MS.gene29159:CDS | 25.0% |
| ! | TTCAACATTTATTGGAAGTT+AGG | + | chr5.3:21895502-21895521 | MS.gene29159:intron | 25.0% |
| !! | CATTTTCATCAAATTCATCA+TGG | - | chr5.3:21896594-21896613 | None:intergenic | 25.0% |
| !! | TCGTCTTATTCAACATTTAT+TGG | + | chr5.3:21895494-21895513 | MS.gene29159:intron | 25.0% |
| !!! | CATCTGAGATATTTTTATCA+AGG | - | chr5.3:21895227-21895246 | None:intergenic | 25.0% |
| !!! | TAACATGTACTTTTAAGTTC+AGG | + | chr5.3:21895799-21895818 | MS.gene29159:intron | 25.0% |
| !!! | TTATGTGTTTTTTAACATGC+AGG | + | chr5.3:21896213-21896232 | MS.gene29159:intron | 25.0% |
| AACTTAGCATAGACCTTTAT+TGG | + | chr5.3:21894412-21894431 | MS.gene29159:CDS | 30.0% | |
| AAGTAGATATCTTCTTCACA+AGG | + | chr5.3:21893561-21893580 | MS.gene29159:CDS | 30.0% | |
| ACAATGATAGCAATCAAATC+TGG | + | chr5.3:21894438-21894457 | MS.gene29159:CDS | 30.0% | |
| ACTTGAACAACAACTCTTAA+AGG | - | chr5.3:21896346-21896365 | None:intergenic | 30.0% | |
| ACTTTGAATTACAAGAGAGT+AGG | + | chr5.3:21894958-21894977 | MS.gene29159:CDS | 30.0% | |
| AGAATCAAATCAGGAAGTAA+AGG | + | chr5.3:21894366-21894385 | MS.gene29159:CDS | 30.0% | |
| AGGATATGAAACAGAATTAG+TGG | + | chr5.3:21895444-21895463 | MS.gene29159:intron | 30.0% | |
| ATGACTGAAGAAGTTGAAAA+AGG | + | chr5.3:21894099-21894118 | MS.gene29159:CDS | 30.0% | |
| CAAAAGAAAGCTACAAGAAA+CGG | - | chr5.3:21894670-21894689 | None:intergenic | 30.0% | |
| CAACTATATCAGTCAAGATA+AGG | - | chr5.3:21895566-21895585 | None:intergenic | 30.0% | |
| CATCATTATAGAGTTCATTG+AGG | - | chr5.3:21895779-21895798 | None:intergenic | 30.0% | |
| CTATCATTGTTCTCCAATAA+AGG | - | chr5.3:21894428-21894447 | None:intergenic | 30.0% | |
| CTTGAACAACAACTCTTAAA+GGG | - | chr5.3:21896345-21896364 | None:intergenic | 30.0% | |
| GAAAGTTTGAGAATCAAATC+AGG | + | chr5.3:21894357-21894376 | MS.gene29159:CDS | 30.0% | |
| GACTAATAAAAACTAGGCTA+TGG | + | chr5.3:21895965-21895984 | MS.gene29159:intron | 30.0% | |
| GATCTCATAATTCAAGTAAG+GGG | + | chr5.3:21893538-21893557 | MS.gene29159:CDS | 30.0% | |
| GTGATCTCATAATTCAAGTA+AGG | + | chr5.3:21893536-21893555 | MS.gene29159:CDS | 30.0% | |
| TACCTTGAGATAAATGTCAA+TGG | - | chr5.3:21895150-21895169 | None:intergenic | 30.0% | |
| TATTAACAGATCATTCACTG+TGG | - | chr5.3:21894781-21894800 | None:intergenic | 30.0% | |
| TGATCATATCTTGCAAATTC+TGG | - | chr5.3:21895110-21895129 | None:intergenic | 30.0% | |
| TTGGAACATTTCATGTTACA+AGG | + | chr5.3:21894858-21894877 | MS.gene29159:CDS | 30.0% | |
| TTTCAACTTCTTCAGTCATT+TGG | - | chr5.3:21894098-21894117 | None:intergenic | 30.0% | |
| TTTCCGTTCTTGGAAATATT+TGG | - | chr5.3:21894525-21894544 | None:intergenic | 30.0% | |
| !! | AATGGTTTGGTAAATGATGA+TGG | + | chr5.3:21896610-21896629 | MS.gene29159:CDS | 30.0% |
| !! | AGAGTTGAAGACTTTGATTT+TGG | - | chr5.3:21896550-21896569 | None:intergenic | 30.0% |
| !! | GAAGAAAATTTTCTAGCATG+AGG | + | chr5.3:21895987-21896006 | MS.gene29159:intron | 30.0% |
| !! | GTTCTTTTCTTTGTTTATGC+AGG | + | chr5.3:21893491-21893510 | MS.gene29159:intron | 30.0% |
| !! | TGAAGAAGCATTGAGAATAT+TGG | - | chr5.3:21894709-21894728 | None:intergenic | 30.0% |
| !! | TGTGTTGTTGTATGTTTTGA+TGG | - | chr5.3:21896466-21896485 | None:intergenic | 30.0% |
| !! | TTGGTAAATGATGATGGAAT+TGG | + | chr5.3:21896616-21896635 | MS.gene29159:CDS | 30.0% |
| !!! | AGCATTTTTTTAGGTTGTGT+AGG | - | chr5.3:21896676-21896695 | None:intergenic | 30.0% |
| !!! | TATTTTAAGGTCAAGAGAGT+TGG | - | chr5.3:21895474-21895493 | None:intergenic | 30.0% |
| AAACTTGATTCACAAGCTTG+AGG | + | chr5.3:21894122-21894141 | MS.gene29159:CDS | 35.0% | |
| AAGAAGAGTAGGACTTCAAT+TGG | + | chr5.3:21894749-21894768 | MS.gene29159:CDS | 35.0% | |
| AAGGTTCCTTCAAATCTCAT+TGG | + | chr5.3:21894465-21894484 | MS.gene29159:CDS | 35.0% | |
| AATAGTTTCAATGCATCTGC+TGG | - | chr5.3:21894247-21894266 | None:intergenic | 35.0% | |
| AATCAGGAAGTTGGACTATT+TGG | - | chr5.3:21893966-21893985 | None:intergenic | 35.0% | |
| ACGTATTGTTACATTTCGGA+AGG | + | chr5.3:21893710-21893729 | MS.gene29159:intron | 35.0% | |
| AGCCATTGACATTTATCTCA+AGG | + | chr5.3:21895145-21895164 | MS.gene29159:CDS | 35.0% | |
| AGCTCTACTACAAGTATTCA+AGG | + | chr5.3:21896490-21896509 | MS.gene29159:CDS | 35.0% | |
| ATACATGAATATGTGACTGC+AGG | + | chr5.3:21896151-21896170 | MS.gene29159:intron | 35.0% | |
| ATGATAGCAATCAAATCTGG+TGG | + | chr5.3:21894441-21894460 | MS.gene29159:CDS | 35.0% | |
| ATGGAATTAGCAAGAAGAGT+AGG | + | chr5.3:21894738-21894757 | MS.gene29159:CDS | 35.0% | |
| ATTAGTAGTTCGTTACGAGA+GGG | - | chr5.3:21895334-21895353 | None:intergenic | 35.0% | |
| ATTCTGAGCATAATCTTTGC+AGG | - | chr5.3:21893921-21893940 | None:intergenic | 35.0% | |
| ATTGAAAGTGGCAAAACTTG+TGG | + | chr5.3:21895010-21895029 | MS.gene29159:CDS | 35.0% | |
| CACACTATCAATTCATGTGA+AGG | - | chr5.3:21895692-21895711 | None:intergenic | 35.0% | |
| CATTATAGAGTTCATTGAGG+TGG | - | chr5.3:21895776-21895795 | None:intergenic | 35.0% | |
| CATTTATTGGAAGTTAGGTG+TGG | + | chr5.3:21895507-21895526 | MS.gene29159:intron | 35.0% | |
| CTTCTTTCTATTTCCGTTCT+TGG | - | chr5.3:21894535-21894554 | None:intergenic | 35.0% | |
| GCGAAATAACTTCAAAGCAT+AGG | + | chr5.3:21894598-21894617 | MS.gene29159:CDS | 35.0% | |
| GTATTCAAGGTGAGGATAAT+TGG | + | chr5.3:21896503-21896522 | MS.gene29159:CDS | 35.0% | |
| TACAGTCTATGATGTTGAGT+TGG | + | chr5.3:21894824-21894843 | MS.gene29159:CDS | 35.0% | |
| TACTACAAGTATTCAAGGTG+AGG | + | chr5.3:21896495-21896514 | MS.gene29159:CDS | 35.0% | |
| TCAAAAGTCTTCAACGATCT+TGG | - | chr5.3:21894906-21894925 | None:intergenic | 35.0% | |
| TCAAATCAGGAAGTAAAGGA+TGG | + | chr5.3:21894370-21894389 | MS.gene29159:CDS | 35.0% | |
| TCTACACTTCAGAAGCTATA+AGG | + | chr5.3:21893387-21893406 | MS.gene29159:CDS | 35.0% | |
| TCTGTCTTAATACTCGTTGA+GGG | - | chr5.3:21895276-21895295 | None:intergenic | 35.0% | |
| TGAACAACGAGCTTGAAATA+TGG | - | chr5.3:21896103-21896122 | None:intergenic | 35.0% | |
| TGCTTCTTCATCTTCAAAGA+TGG | + | chr5.3:21894719-21894738 | MS.gene29159:CDS | 35.0% | |
| TGTAGTCTGAAGACTTACTA+TGG | - | chr5.3:21894187-21894206 | None:intergenic | 35.0% | |
| TGTCACATAGTCATTCTAGA+AGG | + | chr5.3:21894304-21894323 | MS.gene29159:CDS | 35.0% | |
| TGTCATATTAGTGTTGTCTC+TGG | + | chr5.3:21893768-21893787 | MS.gene29159:intron | 35.0% | |
| TTAATAGAAGGGATTAAGCG+CGG | - | chr5.3:21895303-21895322 | None:intergenic | 35.0% | |
| TTCAAAGCATAGGCTTCTAT+TGG | + | chr5.3:21894608-21894627 | MS.gene29159:CDS | 35.0% | |
| TTGAATTACAAGAGAGTAGG+AGG | + | chr5.3:21894961-21894980 | MS.gene29159:CDS | 35.0% | |
| ! | ACATAGTACTGGAACTATGA+TGG | - | chr5.3:21895669-21895688 | None:intergenic | 35.0% |
| ! | GTCACATAGTCATTCTAGAA+GGG | + | chr5.3:21894305-21894324 | MS.gene29159:CDS | 35.0% |
| !! | AAAGCATTGCTTACAACACA+TGG | + | chr5.3:21896433-21896452 | MS.gene29159:CDS | 35.0% |
| !! | ATGCTTTGAAGTTATTTCGC+TGG | - | chr5.3:21894598-21894617 | None:intergenic | 35.0% |
| !! | ATTTGGTGATGAGATGAATC+AGG | - | chr5.3:21893949-21893968 | None:intergenic | 35.0% |
| !! | CGTTGAAGACTTTTGAAAGA+AGG | + | chr5.3:21894910-21894929 | MS.gene29159:CDS | 35.0% |
| !! | TCTGAAGTGTAGAAAGTATC+TGG | - | chr5.3:21893380-21893399 | None:intergenic | 35.0% |
| !! | TGAAGACTTTTGAAAGAAGG+CGG | + | chr5.3:21894913-21894932 | MS.gene29159:CDS | 35.0% |
| !! | TGAGTTGGTGATGACTATAT+TGG | + | chr5.3:21894839-21894858 | MS.gene29159:CDS | 35.0% |
| !!! | TTGATGATGCATCTCCTTTT+TGG | + | chr5.3:21893446-21893465 | MS.gene29159:intron | 35.0% |
| AAAGTCTTCAACGATCTTGG+AGG | - | chr5.3:21894903-21894922 | None:intergenic | 40.0% | |
| AAGAGTAGGACTTCAATTGG+AGG | + | chr5.3:21894752-21894771 | MS.gene29159:CDS | 40.0% | |
| AAGTCTTCAACGATCTTGGA+GGG | - | chr5.3:21894902-21894921 | None:intergenic | 40.0% | |
| AATCAGGAAGTAAAGGATGG+TGG | + | chr5.3:21894373-21894392 | MS.gene29159:CDS | 40.0% | |
| ACTTGTGGATAGATACCTTC+AGG | + | chr5.3:21895025-21895044 | MS.gene29159:CDS | 40.0% | |
| AGGGGGAAATCGTTAATAGA+AGG | - | chr5.3:21895315-21895334 | None:intergenic | 40.0% | |
| ATCAGGAAGTAAAGGATGGT+GGG | + | chr5.3:21894374-21894393 | MS.gene29159:CDS | 40.0% | |
| CAGAACTGAACAAGAGTGAA+AGG | + | chr5.3:21896242-21896261 | MS.gene29159:CDS | 40.0% | |
| CGAAATGTAACAATACGTGC+CGG | - | chr5.3:21893708-21893727 | None:intergenic | 40.0% | |
| CGGCACGTATTGTTACATTT+CGG | + | chr5.3:21893706-21893725 | MS.gene29159:intron | 40.0% | |
| CTCAACGAGTATTAAGACAG+AGG | + | chr5.3:21895275-21895294 | MS.gene29159:intron | 40.0% | |
| CTCTGTCTTAATACTCGTTG+AGG | - | chr5.3:21895277-21895296 | None:intergenic | 40.0% | |
| CTTGCAGCTACAATGTTGTA+AGG | - | chr5.3:21894057-21894076 | None:intergenic | 40.0% | |
| CTTTCACTCTTGTTCAGTTC+TGG | - | chr5.3:21896244-21896263 | None:intergenic | 40.0% | |
| GAGTTCATTGAGGTGGAAAT+CGG | - | chr5.3:21895769-21895788 | None:intergenic | 40.0% | |
| GATTAGTAGTTCGTTACGAG+AGG | - | chr5.3:21895335-21895354 | None:intergenic | 40.0% | |
| GCACAGACACTTCAAATTGA+AGG | + | chr5.3:21893656-21893675 | MS.gene29159:intron | 40.0% | |
| GCATCACCAATGAGATTTGA+AGG | - | chr5.3:21894474-21894493 | None:intergenic | 40.0% | |
| GGGGGAAATCGTTAATAGAA+GGG | - | chr5.3:21895314-21895333 | None:intergenic | 40.0% | |
| GTCAGTCAGGCTAAAATTTC+TGG | - | chr5.3:21895542-21895561 | None:intergenic | 40.0% | |
| GTGACAAACTCACCTTTGTA+GGG | - | chr5.3:21894290-21894309 | None:intergenic | 40.0% | |
| TCATGTGAAGGACATAGTAC+TGG | - | chr5.3:21895680-21895699 | None:intergenic | 40.0% | |
| TCTTTGCAGGCATAAGCATT+TGG | - | chr5.3:21893908-21893927 | None:intergenic | 40.0% | |
| TGAACTATGTGATGCTGAAG+AGG | - | chr5.3:21894988-21895007 | None:intergenic | 40.0% | |
| TGACTGCAAAAAGCTCTCAA+TGG | + | chr5.3:21896285-21896304 | MS.gene29159:CDS | 40.0% | |
| TGTGACAAACTCACCTTTGT+AGG | - | chr5.3:21894291-21894310 | None:intergenic | 40.0% | |
| TTAGTAGTTCGTTACGAGAG+GGG | - | chr5.3:21895333-21895352 | None:intergenic | 40.0% | |
| TTCAATTCTTGCATCCTCCA+TGG | + | chr5.3:21894150-21894169 | MS.gene29159:CDS | 40.0% | |
| TTGTGTGCTAAGTTCTGCTA+TGG | + | chr5.3:21894012-21894031 | MS.gene29159:CDS | 40.0% | |
| TTTGAACATGGTAGCTCAGT+TGG | - | chr5.3:21895937-21895956 | None:intergenic | 40.0% | |
| ! | AGTCAGGCTAAAATTTCTGG+TGG | - | chr5.3:21895539-21895558 | None:intergenic | 40.0% |
| ! | AGTCCAACTTCCTGATTTTC+CGG | + | chr5.3:21893969-21893988 | MS.gene29159:CDS | 40.0% |
| ! | ATAGTCATTCTAGAAGGGTG+AGG | + | chr5.3:21894310-21894329 | MS.gene29159:CDS | 40.0% |
| ! | CCTCCTGTTTAGAACTCATT+CGG | + | chr5.3:21895897-21895916 | MS.gene29159:intron | 40.0% |
| ! | GAGGATAATTGGAGTGTTTC+TGG | + | chr5.3:21896514-21896533 | MS.gene29159:CDS | 40.0% |
| ! | TAGTCATTCTAGAAGGGTGA+GGG | + | chr5.3:21894311-21894330 | MS.gene29159:CDS | 40.0% |
| ! | TGAGGCGTCACTATAATGAT+TGG | + | chr5.3:21896005-21896024 | MS.gene29159:intron | 40.0% |
| ! | TTGTGTAGGAAGAGCACAAA+TGG | - | chr5.3:21896662-21896681 | None:intergenic | 40.0% |
| !! | ACACCGAATGAGTTCTAAAC+AGG | - | chr5.3:21895903-21895922 | None:intergenic | 40.0% |
| !! | CTACAAAAGCGTTGCATTTG+TGG | + | chr5.3:21894202-21894221 | MS.gene29159:CDS | 40.0% |
| !! | GTCAGGCTAAAATTTCTGGT+GGG | - | chr5.3:21895538-21895557 | None:intergenic | 40.0% |
| !! | TCTAAGAATGAAGCTTGCTG+AGG | + | chr5.3:21896567-21896586 | MS.gene29159:CDS | 40.0% |
| ACAAACTCACCTTTGTAGGG+TGG | - | chr5.3:21894287-21894306 | None:intergenic | 45.0% | |
| AGCAATCAAATCTGGTGGCA+AGG | + | chr5.3:21894446-21894465 | MS.gene29159:CDS | 45.0% | |
| ATTCTTGCATCCTCCATGGT+TGG | + | chr5.3:21894154-21894173 | MS.gene29159:CDS | 45.0% | |
| CATAAGCATTTGGACAGCAG+GGG | - | chr5.3:21893898-21893917 | None:intergenic | 45.0% | |
| CATCTCTTGCAACTTCCTGA+AGG | - | chr5.3:21895043-21895062 | None:intergenic | 45.0% | |
| CATTCACGCAGTCAGTTCAT+TGG | + | chr5.3:21896051-21896070 | MS.gene29159:intron | 45.0% | |
| CATTTGTGGTCCGAAGACTT+GGG | + | chr5.3:21894216-21894235 | MS.gene29159:CDS | 45.0% | |
| GCATAAGCATTTGGACAGCA+GGG | - | chr5.3:21893899-21893918 | None:intergenic | 45.0% | |
| GCTGGTAATTCCCAAGTCTT+CGG | - | chr5.3:21894229-21894248 | None:intergenic | 45.0% | |
| GTAGCTCAGTGATACGAGTT+GGG | + | chr5.3:21895249-21895268 | MS.gene29159:intron | 45.0% | |
| GTCAAGATAAGGAGTCAGTC+AGG | - | chr5.3:21895555-21895574 | None:intergenic | 45.0% | |
| GTCAGTTCATTGGTAGGTGT+TGG | + | chr5.3:21896061-21896080 | MS.gene29159:intron | 45.0% | |
| GTCTGAGTCTAACTCAGACT+CGG | + | chr5.3:21894572-21894591 | MS.gene29159:CDS | 45.0% | |
| GTCTGAGTTAGACTCAGACT+CGG | - | chr5.3:21894571-21894590 | None:intergenic | 45.0% | |
| TAGTAGTTCGTTACGAGAGG+GGG | - | chr5.3:21895332-21895351 | None:intergenic | 45.0% | |
| TGTAGCTCAGTGATACGAGT+TGG | + | chr5.3:21895248-21895267 | MS.gene29159:intron | 45.0% | |
| ! | ACAAGAAACGGCGCCTTTTT+CGG | - | chr5.3:21894658-21894677 | None:intergenic | 45.0% |
| ! | AGCTTGCTTCCAACCGAAAA+AGG | + | chr5.3:21894642-21894661 | MS.gene29159:CDS | 45.0% |
| ! | GTCCAACTTCCTGATTTTCC+GGG | + | chr5.3:21893970-21893989 | MS.gene29159:CDS | 45.0% |
| ! | TGGTGATGAGATGAATCAGG+AGG | - | chr5.3:21893946-21893965 | None:intergenic | 45.0% |
| !! | CCGAATGAGTTCTAAACAGG+AGG | - | chr5.3:21895900-21895919 | None:intergenic | 45.0% |
| !! | GAGTTCTAAACAGGAGGTTC+TGG | - | chr5.3:21895894-21895913 | None:intergenic | 45.0% |
| !! | GGTGTTGGCTCAAAATTCGA+CGG | + | chr5.3:21896076-21896095 | MS.gene29159:intron | 45.0% |
| AGTCTTGAGCCACCCTACAA+AGG | + | chr5.3:21894275-21894294 | MS.gene29159:CDS | 50.0% | |
| CAAGCTAGAGCAGCATCATC+TGG | + | chr5.3:21896379-21896398 | MS.gene29159:CDS | 50.0% | |
| CACCCGGAAAATCAGGAAGT+TGG | - | chr5.3:21893975-21893994 | None:intergenic | 50.0% | |
| CACGCAGTCAGTTCATTGGT+AGG | + | chr5.3:21896055-21896074 | MS.gene29159:intron | 50.0% | |
| CTATGGTGTCCTTCCAACCA+TGG | - | chr5.3:21894170-21894189 | None:intergenic | 50.0% | |
| GCATTTGTGGTCCGAAGACT+TGG | + | chr5.3:21894215-21894234 | MS.gene29159:CDS | 50.0% | |
| GGCATAAGCATTTGGACAGC+AGG | - | chr5.3:21893900-21893919 | None:intergenic | 50.0% | |
| GTCAGACACTTACACGACAC+CGG | + | chr5.3:21893686-21893705 | MS.gene29159:intron | 50.0% | |
| TCAAATGCTTCCACTCCACC+CGG | - | chr5.3:21893991-21894010 | None:intergenic | 50.0% | |
| TTGCATCCTCCATGGTTGGA+AGG | + | chr5.3:21894158-21894177 | MS.gene29159:CDS | 50.0% | |
| ! | AACGATCTTGGAGGGCTAGT+TGG | - | chr5.3:21894894-21894913 | None:intergenic | 50.0% |
| ! | AATGGAAGCGTGCATGCATG+CGG | + | chr5.3:21896303-21896322 | MS.gene29159:CDS | 50.0% |
| ! | ACATGGTAGCTCAGTTGGTG+AGG | - | chr5.3:21895932-21895951 | None:intergenic | 50.0% |
| ! | CAACTTCCTGATTTTCCGGG+TGG | + | chr5.3:21893973-21893992 | MS.gene29159:CDS | 50.0% |
| GAACTGACTGCGTGAATGCG+TGG | - | chr5.3:21896049-21896068 | None:intergenic | 55.0% | |
| GCTAGAGCAGCATCATCTGG+TGG | + | chr5.3:21896382-21896401 | MS.gene29159:CDS | 55.0% | |
| TCCACTCCACCCGGAAAATC+AGG | - | chr5.3:21893982-21894001 | None:intergenic | 55.0% | |
| TGAAAGAAGGCGGTCGCGTT+CGG | + | chr5.3:21894923-21894942 | MS.gene29159:CDS | 55.0% | |
| TGGTGTCCTTCCAACCATGG+AGG | - | chr5.3:21894167-21894186 | None:intergenic | 55.0% | |
| ! | TCCTGATTTTCCGGGTGGAG+TGG | + | chr5.3:21893978-21893997 | MS.gene29159:CDS | 55.0% |
| !! | GATCTTGGAGGGCTAGTTGG+TGG | - | chr5.3:21894891-21894910 | None:intergenic | 55.0% |
| !!! | GAAACGGCGCCTTTTTCGGT+TGG | - | chr5.3:21894654-21894673 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 21893350 | 21896741 | 21893350 | ID=MS.gene29159 |
| chr5.3 | mRNA | 21893350 | 21896741 | 21893350 | ID=MS.gene29159.t1;Parent=MS.gene29159 |
| chr5.3 | exon | 21893350 | 21893408 | 21893350 | ID=MS.gene29159.t1.exon1;Parent=MS.gene29159.t1 |
| chr5.3 | CDS | 21893350 | 21893408 | 21893350 | ID=cds.MS.gene29159.t1;Parent=MS.gene29159.t1 |
| chr5.3 | exon | 21893513 | 21893582 | 21893513 | ID=MS.gene29159.t1.exon2;Parent=MS.gene29159.t1 |
| chr5.3 | CDS | 21893513 | 21893582 | 21893513 | ID=cds.MS.gene29159.t1;Parent=MS.gene29159.t1 |
| chr5.3 | exon | 21893892 | 21895166 | 21893892 | ID=MS.gene29159.t1.exon3;Parent=MS.gene29159.t1 |
| chr5.3 | CDS | 21893892 | 21895166 | 21893892 | ID=cds.MS.gene29159.t1;Parent=MS.gene29159.t1 |
| chr5.3 | exon | 21896235 | 21896741 | 21896235 | ID=MS.gene29159.t1.exon4;Parent=MS.gene29159.t1 |
| chr5.3 | CDS | 21896235 | 21896741 | 21896235 | ID=cds.MS.gene29159.t1;Parent=MS.gene29159.t1 |
| Gene Sequence |
| Protein sequence |
