Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44279.t1 | XP_003613103.1 | 99.4 | 636 | 4 | 0 | 1 | 636 | 1 | 636 | 0.00E+00 | 1229.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44279.t1 | Q9C9V6 | 71.6 | 645 | 159 | 10 | 1 | 636 | 1 | 630 | 2.2e-247 | 856.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44279.t1 | G7JXS6 | 99.4 | 636 | 4 | 0 | 1 | 636 | 1 | 636 | 0.0e+00 | 1229.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44279 | MS.gene95079 | PPI |
| MS.gene048277 | MS.gene44279 | PPI |
| MS.gene042077 | MS.gene44279 | PPI |
| MS.gene02885 | MS.gene44279 | PPI |
| MS.gene44279 | MS.gene43452 | PPI |
| MS.gene44279 | MS.gene012763 | PPI |
| MS.gene44279 | MS.gene003151 | PPI |
| MS.gene44279 | MS.gene01961 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44279.t1 | MTR_5g032780 | 99.371 | 636 | 4 | 0 | 1 | 636 | 1 | 636 | 0.0 | 1302 |
| MS.gene44279.t1 | MTR_8g069330 | 72.057 | 637 | 136 | 9 | 1 | 636 | 1 | 596 | 0.0 | 868 |
| MS.gene44279.t1 | MTR_4g134210 | 48.467 | 522 | 223 | 7 | 1 | 521 | 1 | 477 | 1.55e-162 | 479 |
| MS.gene44279.t1 | MTR_5g015790 | 46.429 | 560 | 250 | 9 | 1 | 551 | 1 | 519 | 9.83e-160 | 473 |
| MS.gene44279.t1 | MTR_1g014070 | 47.228 | 523 | 235 | 10 | 1 | 518 | 1 | 487 | 5.54e-153 | 455 |
| MS.gene44279.t1 | MTR_1g106430 | 42.989 | 542 | 269 | 7 | 1 | 537 | 1 | 507 | 2.45e-147 | 441 |
| MS.gene44279.t1 | MTR_2g027410 | 40.758 | 633 | 284 | 12 | 1 | 610 | 1 | 565 | 2.81e-146 | 436 |
| MS.gene44279.t1 | MTR_4g093850 | 39.560 | 546 | 280 | 8 | 5 | 523 | 23 | 545 | 7.72e-127 | 389 |
| MS.gene44279.t1 | MTR_2g009340 | 39.964 | 553 | 275 | 9 | 5 | 523 | 23 | 552 | 3.20e-126 | 388 |
| MS.gene44279.t1 | MTR_2g027410 | 39.535 | 559 | 249 | 11 | 75 | 610 | 1 | 493 | 4.77e-119 | 363 |
| MS.gene44279.t1 | MTR_2g018750 | 40.226 | 532 | 279 | 9 | 1 | 523 | 1 | 502 | 4.05e-114 | 354 |
| MS.gene44279.t1 | MTR_1g064360 | 38.241 | 523 | 283 | 7 | 1 | 523 | 1 | 483 | 2.15e-111 | 346 |
| MS.gene44279.t1 | MTR_1g094850 | 39.065 | 535 | 277 | 11 | 1 | 523 | 1 | 498 | 1.15e-110 | 345 |
| MS.gene44279.t1 | MTR_5g016060 | 37.244 | 537 | 241 | 10 | 22 | 529 | 36 | 505 | 3.01e-108 | 340 |
| MS.gene44279.t1 | MTR_8g090220 | 35.962 | 520 | 259 | 7 | 16 | 515 | 42 | 507 | 5.25e-108 | 336 |
| MS.gene44279.t1 | MTR_8g090220 | 34.964 | 552 | 274 | 8 | 16 | 536 | 42 | 539 | 2.08e-107 | 338 |
| MS.gene44279.t1 | MTR_8g078900 | 38.031 | 518 | 266 | 9 | 28 | 517 | 22 | 512 | 1.16e-105 | 334 |
| MS.gene44279.t1 | MTR_2g084595 | 35.579 | 579 | 327 | 10 | 24 | 591 | 21 | 564 | 4.12e-105 | 332 |
| MS.gene44279.t1 | MTR_8g078900 | 38.264 | 507 | 258 | 9 | 39 | 517 | 3 | 482 | 3.33e-103 | 327 |
| MS.gene44279.t1 | MTR_7g073980 | 38.124 | 501 | 267 | 9 | 22 | 519 | 29 | 489 | 7.35e-102 | 323 |
| MS.gene44279.t1 | MTR_8g078900 | 39.738 | 458 | 239 | 7 | 70 | 517 | 42 | 472 | 5.17e-101 | 321 |
| MS.gene44279.t1 | MTR_4g022330 | 36.014 | 572 | 300 | 11 | 22 | 585 | 30 | 543 | 9.50e-98 | 312 |
| MS.gene44279.t1 | MTR_4g093850 | 35.772 | 492 | 266 | 7 | 5 | 469 | 23 | 491 | 3.09e-95 | 303 |
| MS.gene44279.t1 | MTR_1g088885 | 37.288 | 531 | 271 | 14 | 12 | 525 | 18 | 503 | 2.84e-93 | 300 |
| MS.gene44279.t1 | MTR_4g095430 | 36.217 | 497 | 276 | 7 | 23 | 519 | 10 | 465 | 5.84e-93 | 299 |
| MS.gene44279.t1 | MTR_7g108290 | 35.884 | 588 | 314 | 14 | 12 | 584 | 18 | 557 | 2.05e-90 | 294 |
| MS.gene44279.t1 | MTR_2g048390 | 37.006 | 481 | 261 | 9 | 1 | 468 | 1 | 452 | 2.49e-89 | 285 |
| MS.gene44279.t1 | MTR_3g062540 | 34.449 | 508 | 274 | 8 | 21 | 526 | 19 | 469 | 8.22e-87 | 282 |
| MS.gene44279.t1 | MTR_2g084595 | 35.841 | 452 | 258 | 8 | 24 | 469 | 21 | 446 | 2.43e-81 | 264 |
| MS.gene44279.t1 | MTR_5g016060 | 35.463 | 454 | 199 | 9 | 105 | 529 | 3 | 391 | 1.69e-80 | 264 |
| MS.gene44279.t1 | MTR_8g078900 | 33.966 | 474 | 258 | 8 | 23 | 468 | 17 | 463 | 2.05e-79 | 259 |
| MS.gene44279.t1 | MTR_3g062540 | 33.954 | 483 | 260 | 8 | 46 | 526 | 2 | 427 | 1.82e-78 | 259 |
| MS.gene44279.t1 | MTR_5g075640 | 33.861 | 505 | 282 | 8 | 22 | 524 | 21 | 475 | 3.95e-77 | 256 |
| MS.gene44279.t1 | MTR_8g078900 | 35.697 | 409 | 226 | 6 | 70 | 468 | 42 | 423 | 1.08e-74 | 246 |
| MS.gene44279.t1 | MTR_1g082690 | 31.452 | 496 | 262 | 10 | 27 | 518 | 59 | 480 | 2.53e-72 | 243 |
| MS.gene44279.t1 | MTR_5g075640 | 33.264 | 481 | 269 | 7 | 46 | 524 | 2 | 432 | 5.74e-70 | 236 |
| MS.gene44279.t1 | MTR_4g011530 | 38.188 | 309 | 150 | 4 | 211 | 519 | 46 | 313 | 8.90e-66 | 223 |
| MS.gene44279.t1 | MTR_2g102730 | 39.159 | 309 | 149 | 4 | 211 | 519 | 24 | 293 | 1.61e-62 | 213 |
| MS.gene44279.t1 | MTR_4g045767 | 29.075 | 454 | 251 | 13 | 74 | 519 | 52 | 442 | 7.08e-47 | 174 |
| MS.gene44279.t1 | MTR_4g074190 | 27.481 | 524 | 296 | 13 | 27 | 523 | 4 | 470 | 4.47e-46 | 171 |
| MS.gene44279.t1 | MTR_4g074190 | 27.766 | 479 | 264 | 11 | 70 | 523 | 3 | 424 | 3.06e-44 | 166 |
| MS.gene44279.t1 | MTR_1g035720 | 25.832 | 511 | 281 | 12 | 64 | 541 | 36 | 481 | 4.05e-41 | 157 |
| MS.gene44279.t1 | MTR_4g074190 | 26.539 | 471 | 262 | 13 | 27 | 470 | 4 | 417 | 3.46e-36 | 141 |
| MS.gene44279.t1 | MTR_2g010890 | 25.060 | 419 | 246 | 10 | 94 | 505 | 1 | 358 | 5.01e-21 | 96.7 |
| MS.gene44279.t1 | MTR_1g105870 | 32.161 | 199 | 119 | 4 | 33 | 230 | 38 | 221 | 6.11e-21 | 93.6 |
| MS.gene44279.t1 | MTR_4g080720 | 64.912 | 57 | 20 | 0 | 1 | 57 | 1 | 57 | 1.58e-19 | 83.6 |
| MS.gene44279.t1 | MTR_2g048375 | 36.190 | 105 | 50 | 4 | 485 | 586 | 1 | 91 | 8.39e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44279.t1 | AT1G67900 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 863 |
| MS.gene44279.t1 | AT1G67900 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 863 |
| MS.gene44279.t1 | AT1G67900 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 863 |
| MS.gene44279.t1 | AT1G67900 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 863 |
| MS.gene44279.t1 | AT1G67900 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 863 |
| MS.gene44279.t1 | AT1G67900 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 863 |
| MS.gene44279.t1 | AT3G26490 | 49.238 | 656 | 243 | 15 | 1 | 635 | 1 | 587 | 0.0 | 563 |
| MS.gene44279.t1 | AT3G26490 | 49.238 | 656 | 243 | 15 | 1 | 635 | 1 | 587 | 0.0 | 563 |
| MS.gene44279.t1 | AT3G26490 | 49.238 | 656 | 243 | 15 | 1 | 635 | 1 | 587 | 0.0 | 563 |
| MS.gene44279.t1 | AT3G26490 | 53.265 | 490 | 175 | 13 | 1 | 469 | 1 | 457 | 7.81e-162 | 473 |
| MS.gene44279.t1 | AT2G14820 | 45.149 | 536 | 247 | 8 | 1 | 528 | 1 | 497 | 1.90e-152 | 454 |
| MS.gene44279.t1 | AT2G14820 | 45.149 | 536 | 247 | 8 | 1 | 528 | 1 | 497 | 1.90e-152 | 454 |
| MS.gene44279.t1 | AT5G47800 | 43.152 | 533 | 257 | 7 | 1 | 530 | 1 | 490 | 2.10e-147 | 439 |
| MS.gene44279.t1 | AT5G47800 | 43.152 | 533 | 257 | 7 | 1 | 530 | 1 | 490 | 2.10e-147 | 439 |
| MS.gene44279.t1 | AT5G47800 | 43.152 | 533 | 257 | 7 | 1 | 530 | 1 | 490 | 2.10e-147 | 439 |
| MS.gene44279.t1 | AT5G47800 | 43.152 | 533 | 257 | 7 | 1 | 530 | 114 | 603 | 1.12e-145 | 438 |
| MS.gene44279.t1 | AT5G67440 | 43.619 | 525 | 247 | 8 | 1 | 522 | 1 | 479 | 2.23e-143 | 429 |
| MS.gene44279.t1 | AT5G67440 | 43.619 | 525 | 247 | 8 | 1 | 522 | 1 | 479 | 2.23e-143 | 429 |
| MS.gene44279.t1 | AT4G37590 | 40.336 | 595 | 263 | 12 | 1 | 582 | 1 | 516 | 3.06e-141 | 424 |
| MS.gene44279.t1 | AT4G31820 | 42.722 | 529 | 240 | 10 | 1 | 523 | 1 | 472 | 1.35e-133 | 404 |
| MS.gene44279.t1 | AT5G67440 | 43.595 | 484 | 225 | 7 | 41 | 522 | 5 | 442 | 2.19e-128 | 389 |
| MS.gene44279.t1 | AT2G23050 | 41.588 | 529 | 228 | 11 | 1 | 523 | 1 | 454 | 4.93e-128 | 386 |
| MS.gene44279.t1 | AT5G64330 | 36.498 | 611 | 314 | 9 | 7 | 549 | 33 | 637 | 1.18e-121 | 376 |
| MS.gene44279.t1 | AT5G64330 | 35.759 | 646 | 333 | 11 | 7 | 584 | 33 | 664 | 2.00e-121 | 378 |
| MS.gene44279.t1 | AT4G31820 | 42.017 | 476 | 214 | 9 | 53 | 523 | 1 | 419 | 4.87e-117 | 359 |
| MS.gene44279.t1 | AT5G64330 | 37.133 | 579 | 290 | 9 | 39 | 549 | 6 | 578 | 2.85e-116 | 360 |
| MS.gene44279.t1 | AT1G30440 | 39.171 | 531 | 296 | 9 | 1 | 523 | 1 | 512 | 3.88e-114 | 356 |
| MS.gene44279.t1 | AT5G03250 | 37.782 | 532 | 296 | 6 | 1 | 523 | 1 | 506 | 5.68e-114 | 353 |
| MS.gene44279.t1 | AT5G13600 | 40.189 | 530 | 277 | 10 | 1 | 523 | 1 | 497 | 1.26e-110 | 345 |
| MS.gene44279.t1 | AT5G67385 | 38.976 | 508 | 258 | 8 | 15 | 519 | 16 | 474 | 9.07e-106 | 333 |
| MS.gene44279.t1 | AT5G48800 | 39.053 | 507 | 249 | 9 | 22 | 523 | 37 | 488 | 7.71e-99 | 315 |
| MS.gene44279.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 1.67e-96 | 307 |
| MS.gene44279.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 1.67e-96 | 307 |
| MS.gene44279.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 1.67e-96 | 307 |
| MS.gene44279.t1 | AT5G67385 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 1.67e-96 | 307 |
| MS.gene44279.t1 | AT5G10250 | 34.549 | 521 | 258 | 8 | 22 | 519 | 46 | 506 | 7.87e-93 | 299 |
| MS.gene44279.t1 | AT3G08570 | 37.255 | 510 | 276 | 11 | 13 | 519 | 22 | 490 | 5.91e-92 | 297 |
| MS.gene44279.t1 | AT5G66560 | 36.029 | 544 | 258 | 10 | 28 | 517 | 21 | 528 | 7.44e-92 | 298 |
| MS.gene44279.t1 | AT3G44820 | 33.786 | 589 | 330 | 15 | 26 | 591 | 23 | 574 | 4.76e-91 | 295 |
| MS.gene44279.t1 | AT1G03010 | 37.972 | 503 | 272 | 12 | 24 | 519 | 7 | 476 | 9.11e-91 | 293 |
| MS.gene44279.t1 | AT1G03010 | 37.972 | 503 | 272 | 12 | 24 | 519 | 34 | 503 | 2.41e-90 | 293 |
| MS.gene44279.t1 | AT1G03010 | 37.597 | 516 | 280 | 13 | 11 | 519 | 22 | 502 | 2.69e-90 | 293 |
| MS.gene44279.t1 | AT5G66560 | 36.023 | 533 | 251 | 10 | 39 | 517 | 3 | 499 | 3.02e-90 | 293 |
| MS.gene44279.t1 | AT5G66560 | 38.696 | 460 | 234 | 9 | 70 | 517 | 66 | 489 | 5.55e-90 | 292 |
| MS.gene44279.t1 | AT5G10250 | 34.638 | 511 | 256 | 9 | 22 | 519 | 46 | 491 | 1.58e-89 | 290 |
| MS.gene44279.t1 | AT2G23050 | 40.436 | 413 | 169 | 8 | 113 | 523 | 1 | 338 | 1.50e-87 | 277 |
| MS.gene44279.t1 | AT3G49970 | 36.344 | 465 | 216 | 11 | 39 | 502 | 7 | 392 | 2.89e-86 | 279 |
| MS.gene44279.t1 | AT3G49970 | 36.344 | 465 | 216 | 11 | 39 | 502 | 7 | 392 | 2.89e-86 | 279 |
| MS.gene44279.t1 | AT3G08660 | 35.000 | 520 | 256 | 12 | 8 | 519 | 21 | 466 | 9.94e-84 | 274 |
| MS.gene44279.t1 | AT2G47860 | 35.341 | 498 | 282 | 10 | 24 | 519 | 35 | 494 | 2.02e-81 | 270 |
| MS.gene44279.t1 | AT2G30520 | 32.604 | 503 | 285 | 9 | 21 | 523 | 25 | 473 | 3.63e-79 | 263 |
| MS.gene44279.t1 | AT3G50840 | 34.921 | 504 | 276 | 8 | 28 | 529 | 18 | 471 | 3.92e-78 | 259 |
| MS.gene44279.t1 | AT5G03250 | 36.429 | 420 | 232 | 6 | 113 | 523 | 1 | 394 | 4.82e-77 | 254 |
| MS.gene44279.t1 | AT2G47860 | 33.460 | 526 | 277 | 11 | 24 | 519 | 35 | 517 | 2.84e-76 | 256 |
| MS.gene44279.t1 | AT3G08660 | 35.076 | 459 | 224 | 10 | 69 | 519 | 14 | 406 | 7.00e-74 | 246 |
| MS.gene44279.t1 | AT2G30520 | 33.260 | 454 | 251 | 8 | 70 | 523 | 24 | 425 | 6.80e-73 | 244 |
| MS.gene44279.t1 | AT2G30520 | 33.260 | 454 | 251 | 8 | 70 | 523 | 24 | 425 | 6.80e-73 | 244 |
| MS.gene44279.t1 | AT3G50840 | 33.874 | 493 | 258 | 9 | 47 | 529 | 1 | 435 | 1.21e-71 | 241 |
| MS.gene44279.t1 | AT3G50840 | 33.874 | 493 | 258 | 9 | 47 | 529 | 1 | 435 | 1.21e-71 | 241 |
| MS.gene44279.t1 | AT5G66560 | 32.665 | 499 | 240 | 10 | 28 | 469 | 21 | 480 | 2.41e-65 | 223 |
| MS.gene44279.t1 | AT1G52770 | 39.677 | 310 | 152 | 4 | 211 | 519 | 28 | 303 | 2.53e-64 | 219 |
| MS.gene44279.t1 | AT3G08660 | 31.770 | 469 | 242 | 12 | 8 | 470 | 21 | 417 | 2.88e-61 | 210 |
| MS.gene44279.t1 | AT3G15570 | 37.705 | 305 | 151 | 4 | 220 | 519 | 38 | 308 | 3.26e-59 | 205 |
| MS.gene44279.t1 | AT2G47860 | 32.662 | 447 | 261 | 10 | 24 | 468 | 35 | 443 | 8.02e-58 | 201 |
| MS.gene44279.t1 | AT2G47860 | 33.092 | 414 | 232 | 9 | 113 | 519 | 1 | 376 | 1.03e-54 | 195 |
| MS.gene44279.t1 | AT2G47860 | 33.092 | 414 | 232 | 9 | 113 | 519 | 1 | 376 | 1.03e-54 | 195 |
| MS.gene44279.t1 | AT2G47860 | 30.998 | 471 | 262 | 11 | 24 | 469 | 35 | 467 | 4.68e-53 | 189 |
| MS.gene44279.t1 | AT3G19850 | 26.483 | 472 | 265 | 8 | 69 | 517 | 51 | 463 | 1.09e-48 | 179 |
| MS.gene44279.t1 | AT5G48130 | 26.049 | 453 | 269 | 9 | 70 | 517 | 76 | 467 | 2.07e-42 | 162 |
| MS.gene44279.t1 | AT3G03510 | 30.000 | 450 | 207 | 12 | 82 | 519 | 8 | 361 | 8.75e-42 | 157 |
| MS.gene44279.t1 | AT1G50280 | 24.353 | 464 | 277 | 8 | 70 | 513 | 18 | 427 | 1.90e-39 | 152 |
| MS.gene44279.t1 | AT1G50280 | 24.353 | 464 | 277 | 8 | 70 | 513 | 51 | 460 | 3.07e-39 | 152 |
| MS.gene44279.t1 | AT5G17580 | 27.567 | 526 | 311 | 11 | 8 | 526 | 2 | 464 | 1.20e-38 | 150 |
| MS.gene44279.t1 | AT5G17580 | 27.734 | 512 | 300 | 11 | 22 | 526 | 1 | 449 | 3.72e-38 | 149 |
| MS.gene44279.t1 | AT3G22104 | 25.773 | 485 | 278 | 13 | 28 | 502 | 6 | 418 | 7.22e-32 | 130 |
| MS.gene44279.t1 | AT3G22104 | 25.182 | 413 | 230 | 10 | 98 | 502 | 2 | 343 | 9.23e-23 | 102 |
| MS.gene44279.t1 | AT3G22104 | 25.182 | 413 | 230 | 10 | 98 | 502 | 2 | 343 | 9.23e-23 | 102 |
| MS.gene44279.t1 | AT3G22104 | 25.182 | 413 | 230 | 10 | 98 | 502 | 2 | 343 | 9.23e-23 | 102 |
Find 112 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTAGCATAGACCTTTAT+TGG | 0.142674 | 5.4:+22992711 | MS.gene44279:CDS |
| GAGGATAATTGGAGTGTTTC+TGG | 0.144528 | 5.4:+22994823 | MS.gene44279:CDS |
| CTTCTTTCTATTTCCGTTCT+TGG | 0.164934 | 5.4:-22992831 | None:intergenic |
| CTTTCACTCTTGTTCAGTTC+TGG | 0.171118 | 5.4:-22994550 | None:intergenic |
| TTTCCGTTCTTGGAAATATT+TGG | 0.180699 | 5.4:-22992821 | None:intergenic |
| CATGATGAATTTGATGAAAA+TGG | 0.208213 | 5.4:+22994901 | MS.gene44279:CDS |
| ACTTGAACAACAACTCTTAA+AGG | 0.232478 | 5.4:-22994652 | None:intergenic |
| AATCAGGAAGTTGAACTATT+TGG | 0.235212 | 5.4:-22992262 | None:intergenic |
| TCCAAGTTTCATAAACTTCA+TGG | 0.285144 | 5.4:-22991648 | None:intergenic |
| AGAGTTGAAGACTTTGATTT+TGG | 0.291628 | 5.4:-22994856 | None:intergenic |
| TTTCAACTTCTTCAGTCATT+TGG | 0.299710 | 5.4:-22992394 | None:intergenic |
| AGCTTGCTTCCAACTGAAAA+AGG | 0.300589 | 5.4:+22992941 | MS.gene44279:CDS |
| TGATCATATCTTGCAAATTC+TGG | 0.304119 | 5.4:-22993406 | None:intergenic |
| GTATTCAAGGTGAGGATAAT+TGG | 0.310231 | 5.4:+22994812 | MS.gene44279:CDS |
| TGAAGAAGCATTGAGAATAT+TGG | 0.313880 | 5.4:-22993005 | None:intergenic |
| CCACAAAAGCGTTGCATTTG+TGG | 0.325463 | 5.4:+22992501 | MS.gene44279:CDS |
| ATGACTGAAGAAGTTGAAAA+AGG | 0.332313 | 5.4:+22992398 | MS.gene44279:CDS |
| TCTACACTTCAGAAGCTATA+AGG | 0.334248 | 5.4:+22991687 | MS.gene44279:CDS |
| CTATCATTGTTCTCCAATAA+AGG | 0.335482 | 5.4:-22992724 | None:intergenic |
| TGAAAATTTATGCATCTAGA+TGG | 0.337434 | 5.4:+22992795 | MS.gene44279:CDS |
| TCTGAAGTGTAGAAAGTATC+TGG | 0.344925 | 5.4:-22991677 | None:intergenic |
| GCCATGAAGTTTATGAAACT+TGG | 0.345527 | 5.4:+22991647 | None:intergenic |
| TGTGGTCTGAAGACTTACTA+TGG | 0.346482 | 5.4:-22992483 | None:intergenic |
| TCCACTCCACCCGGAAAATC+AGG | 0.369267 | 5.4:-22992278 | None:intergenic |
| TGTGACAAACTCACCTTTGT+AGG | 0.375606 | 5.4:-22992587 | None:intergenic |
| TTCAAAGCATAGGCTGCTAT+TGG | 0.379331 | 5.4:+22992907 | MS.gene44279:CDS |
| TCTTTGCAGGCATAAGCATT+TGG | 0.386345 | 5.4:-22992204 | None:intergenic |
| TGAAAGAAGGCGATCACGTT+CGG | 0.388598 | 5.4:+22993222 | MS.gene44279:CDS |
| TTGGTAAATGATGATGGAAT+TGG | 0.390964 | 5.4:+22994925 | MS.gene44279:CDS |
| ATTCTGAGCATAATCTTTGC+AGG | 0.392741 | 5.4:-22992217 | None:intergenic |
| TGAGTTGGTGATGACTATAT+TGG | 0.420160 | 5.4:+22993138 | MS.gene44279:CDS |
| GTGATCTCATAATTCAAGTA+AGG | 0.425248 | 5.4:+22991836 | MS.gene44279:CDS |
| TGCTTCTTCATCTTCAAAGA+TGG | 0.426814 | 5.4:+22993018 | MS.gene44279:CDS |
| GCATTTGTGGTCCGAAGACT+TGG | 0.427763 | 5.4:+22992514 | MS.gene44279:CDS |
| CTTGAACAACAACTCTTAAA+GGG | 0.429190 | 5.4:-22994651 | None:intergenic |
| TGTCACATAGTCATTCTAGA+AGG | 0.445951 | 5.4:+22992603 | MS.gene44279:CDS |
| AGCTCTACTACAAGTATTCA+AGG | 0.447165 | 5.4:+22994799 | MS.gene44279:CDS |
| GGCATAAGCATTTGGATAGC+AGG | 0.447706 | 5.4:-22992196 | None:intergenic |
| GCATCACCAATGAGATTTGA+AGG | 0.447840 | 5.4:-22992770 | None:intergenic |
| TTGTGTAGGAAGAGCACAAA+TGG | 0.459576 | 5.4:-22994968 | None:intergenic |
| TGAATTTGATGAAAATGGTT+TGG | 0.459746 | 5.4:+22994906 | MS.gene44279:CDS |
| CAAGCTAGAGCAGCATCATC+TGG | 0.460416 | 5.4:+22994688 | MS.gene44279:CDS |
| TACCTTGAGATAAATGTCAA+TGG | 0.464242 | 5.4:-22993446 | None:intergenic |
| ACAATGATAGCAATCAAATC+TGG | 0.464906 | 5.4:+22992737 | MS.gene44279:CDS |
| AACGATCTCGGAGGGCTAGT+TGG | 0.466201 | 5.4:-22993190 | None:intergenic |
| AAGGTTCCTTCAAATCTCAT+TGG | 0.467784 | 5.4:+22992764 | MS.gene44279:CDS |
| TTCAATTCTTGCATCCTCCA+TGG | 0.467888 | 5.4:+22992449 | MS.gene44279:CDS |
| TCAAAAGTCTTCAACGATCT+CGG | 0.468557 | 5.4:-22993202 | None:intergenic |
| GCTTGTGGATAGGTACCTTC+AGG | 0.469743 | 5.4:+22993324 | MS.gene44279:CDS |
| ATTTGGTGATGAGATGAATC+AGG | 0.473504 | 5.4:-22992245 | None:intergenic |
| ATGCTTTGAAGTTATTTCGC+TGG | 0.473982 | 5.4:-22992894 | None:intergenic |
| GAAAGTTTGAGAATCAAATC+AGG | 0.487700 | 5.4:+22992656 | MS.gene44279:CDS |
| AAGAAGGGTAGGACTTCAAT+TGG | 0.492020 | 5.4:+22993048 | MS.gene44279:CDS |
| GCTGGTAATTCCCAAGTCTT+CGG | 0.495511 | 5.4:-22992525 | None:intergenic |
| TGCGTTGTTGTATGTTTCGA+TGG | 0.498679 | 5.4:-22994772 | None:intergenic |
| AGAATCAAATCAGGAAGTAA+AGG | 0.499839 | 5.4:+22992665 | MS.gene44279:CDS |
| TTGGAACAGTTCATGTTACA+AGG | 0.510924 | 5.4:+22993157 | MS.gene44279:CDS |
| AATGGTTTGGTAAATGATGA+TGG | 0.512979 | 5.4:+22994919 | MS.gene44279:CDS |
| ATTCTTGCATCCTCCATGGT+TGG | 0.519380 | 5.4:+22992453 | MS.gene44279:CDS |
| ATTGAAAGTGGCAAAGCTTG+TGG | 0.529767 | 5.4:+22993309 | MS.gene44279:CDS |
| GCGAAATAACTTCAAAGCAT+AGG | 0.531559 | 5.4:+22992897 | MS.gene44279:CDS |
| CTTGCAGCTACAATGTTGTA+AGG | 0.538418 | 5.4:-22992353 | None:intergenic |
| GCATAAGCATTTGGATAGCA+GGG | 0.539705 | 5.4:-22992195 | None:intergenic |
| AATAGTTTCAATGCATCTGC+TGG | 0.540399 | 5.4:-22992543 | None:intergenic |
| TTGCATCCTCCATGGTTGGA+AGG | 0.541728 | 5.4:+22992457 | MS.gene44279:CDS |
| ACATAGTTCAAAATTGAAAG+TGG | 0.541920 | 5.4:+22993297 | MS.gene44279:CDS |
| TTGAATTACAAGAGAGTAGG+AGG | 0.548073 | 5.4:+22993260 | MS.gene44279:CDS |
| ACTTTGAATTACAAGAGAGT+AGG | 0.548128 | 5.4:+22993257 | MS.gene44279:CDS |
| AGCCATTGACATTTATCTCA+AGG | 0.550508 | 5.4:+22993444 | MS.gene44279:CDS |
| TGATCTCATAATTCAAGTAA+GGG | 0.550839 | 5.4:+22991837 | MS.gene44279:CDS |
| AATGGAAGCGTGCATGCATG+CGG | 0.551671 | 5.4:+22994612 | MS.gene44279:CDS |
| GTGACAAACTCACCTTTGTA+GGG | 0.551753 | 5.4:-22992586 | None:intergenic |
| TTGTGTGCTAAGTTCTGCTA+TGG | 0.551870 | 5.4:+22992311 | MS.gene44279:CDS |
| CAAAGATGGAATTAGCAAGA+AGG | 0.552149 | 5.4:+22993032 | MS.gene44279:CDS |
| AAACTTGATTCACAAGCTTG+AGG | 0.555629 | 5.4:+22992421 | MS.gene44279:CDS |
| AAAGATGGAATTAGCAAGAA+GGG | 0.557589 | 5.4:+22993033 | MS.gene44279:CDS |
| TTACCAAATATTTCCAAGAA+CGG | 0.560310 | 5.4:+22992818 | MS.gene44279:CDS |
| CAGAACTGAACAAGAGTGAA+AGG | 0.560948 | 5.4:+22994551 | MS.gene44279:CDS |
| GATCTCGGAGGGCTAGTTGG+TGG | 0.563074 | 5.4:-22993187 | None:intergenic |
| TGAACTATGTGATGCTGAAG+AGG | 0.563744 | 5.4:-22993284 | None:intergenic |
| ATAGTCATTCTAGAAGGATG+AGG | 0.566210 | 5.4:+22992609 | MS.gene44279:CDS |
| TCAAATGCTTCCACTCCACC+CGG | 0.574131 | 5.4:-22992287 | None:intergenic |
| ATCAGGAAGTAAAGGATGGT+GGG | 0.580568 | 5.4:+22992673 | MS.gene44279:CDS |
| CATTTGTGGTCCGAAGACTT+GGG | 0.581251 | 5.4:+22992515 | MS.gene44279:CDS |
| ATGGAATTAGCAAGAAGGGT+AGG | 0.583335 | 5.4:+22993037 | MS.gene44279:CDS |
| CTATGGTATCCTTCCAACCA+TGG | 0.584707 | 5.4:-22992466 | None:intergenic |
| AGCAATCAAATCTGGTGGCA+AGG | 0.587341 | 5.4:+22992745 | MS.gene44279:CDS |
| CATCTCTTGCAACTTCCTGA+AGG | 0.592567 | 5.4:-22993339 | None:intergenic |
| GTCTGAGTCTAACTCAGACT+CGG | 0.598165 | 5.4:+22992871 | MS.gene44279:CDS |
| AATCAGGAAGTAAAGGATGG+TGG | 0.603373 | 5.4:+22992672 | MS.gene44279:CDS |
| TACTACAAGTATTCAAGGTG+AGG | 0.607107 | 5.4:+22994804 | MS.gene44279:CDS |
| AAGGGTAGGACTTCAATTGG+AGG | 0.609288 | 5.4:+22993051 | MS.gene44279:CDS |
| AGTCTTGAGCCACCCTACAA+AGG | 0.609787 | 5.4:+22992574 | MS.gene44279:CDS |
| TAGTCATTCTAGAAGGATGA+GGG | 0.613006 | 5.4:+22992610 | MS.gene44279:CDS |
| TCAAATCAGGAAGTAAAGGA+TGG | 0.616909 | 5.4:+22992669 | MS.gene44279:CDS |
| TACAGTCTATGATGTTGAGT+TGG | 0.618402 | 5.4:+22993123 | MS.gene44279:CDS |
| AAGTCTTCAACGATCTCGGA+GGG | 0.622487 | 5.4:-22993198 | None:intergenic |
| AAGTGGCAAAGCTTGTGGAT+AGG | 0.625893 | 5.4:+22993314 | MS.gene44279:CDS |
| ATGATAGCAATCAAATCTGG+TGG | 0.634663 | 5.4:+22992740 | MS.gene44279:CDS |
| GCTAGAGCAGCATCATCTGG+TGG | 0.637791 | 5.4:+22994691 | MS.gene44279:CDS |
| GATCTCATAATTCAAGTAAG+GGG | 0.642036 | 5.4:+22991838 | MS.gene44279:CDS |
| GTCTGAGTTAGACTCAGACT+CGG | 0.643618 | 5.4:-22992867 | None:intergenic |
| TCTAAGAATGAAGCTTGCTG+AGG | 0.644686 | 5.4:+22994876 | MS.gene44279:CDS |
| AAAGCATTGCTTACAACACA+TGG | 0.648620 | 5.4:+22994742 | MS.gene44279:CDS |
| CATAAGCATTTGGATAGCAG+GGG | 0.668690 | 5.4:-22992194 | None:intergenic |
| AAAGTCTTCAACGATCTCGG+AGG | 0.669614 | 5.4:-22993199 | None:intergenic |
| ACAAACTCACCTTTGTAGGG+TGG | 0.674969 | 5.4:-22992583 | None:intergenic |
| TCATTTGTATAAGAAAGTGA+AGG | 0.677583 | 5.4:-22993100 | None:intergenic |
| AAGTAGATATCTTCTTCACA+AGG | 0.678976 | 5.4:+22991861 | MS.gene44279:CDS |
| TGGTATCCTTCCAACCATGG+AGG | 0.717381 | 5.4:-22992463 | None:intergenic |
| TGGTGATGAGATGAATCAGG+AGG | 0.725233 | 5.4:-22992242 | None:intergenic |
| TATTAATAGATCATTCACTG+TGG | 0.782652 | 5.4:-22993077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATATACTTATGA+AGG | - | chr5.4:22992130-22992149 | None:intergenic | 10.0% |
| !!! | AAATACAATAAACATTTTAT+AGG | - | chr5.4:22993481-22993500 | None:intergenic | 10.0% |
| !!! | AAGTATATAATTTTTTACTT+TGG | + | chr5.4:22992134-22992153 | MS.gene44279:intron | 10.0% |
| !!! | AGGTTTTTTTATTTTTATTT+TGG | + | chr5.4:22994117-22994136 | MS.gene44279:intron | 10.0% |
| !!! | TAATTTAAGTTTTTTTTTCA+AGG | + | chr5.4:22994160-22994179 | MS.gene44279:intron | 10.0% |
| !! | AAAAACATGTAAAAAAAAAG+TGG | + | chr5.4:22993688-22993707 | MS.gene44279:intron | 15.0% |
| !!! | AATTTACTAAGCATTTTTTT+AGG | - | chr5.4:22994994-22995013 | None:intergenic | 15.0% |
| !!! | ATTTTTATCAAGGTATAAAA+TGG | - | chr5.4:22993517-22993536 | None:intergenic | 15.0% |
| !!! | TTGAATAAGACAATATTTTA+AGG | - | chr5.4:22993787-22993806 | None:intergenic | 15.0% |
| !!! | TTTTGTGTGTATTTTTTTAT+AGG | - | chr5.4:22993671-22993690 | None:intergenic | 15.0% |
| !! | AAAAAATGCTTAGTAAATTG+TGG | + | chr5.4:22994995-22995014 | MS.gene44279:CDS | 20.0% |
| !! | AAATAGAGTGAATTCATAAA+TGG | - | chr5.4:22994042-22994061 | None:intergenic | 20.0% |
| !! | AGATAATTTCATAACTCATT+TGG | + | chr5.4:22993896-22993915 | MS.gene44279:intron | 20.0% |
| !! | ATATAGGACTAATAAAAACT+AGG | + | chr5.4:22994257-22994276 | MS.gene44279:intron | 20.0% |
| !! | CAAAATTAAACAATCCAATA+AGG | - | chr5.4:22991763-22991782 | None:intergenic | 20.0% |
| !! | TGATAAAAATATATCTCAGA+TGG | + | chr5.4:22993527-22993546 | MS.gene44279:intron | 20.0% |
| !!! | ATACTTCACTTTCAAATTTT+AGG | + | chr5.4:22993724-22993743 | MS.gene44279:intron | 20.0% |
| !!! | TCTGAGATATATTTTTATCA+AGG | - | chr5.4:22993527-22993546 | None:intergenic | 20.0% |
| !!! | TTGTCTTATTCAACATTTAT+TGG | + | chr5.4:22993794-22993813 | MS.gene44279:intron | 20.0% |
| ! | AAAATAACGAGCTTGAAATA+TGG | - | chr5.4:22994401-22994420 | None:intergenic | 25.0% |
| ! | ACATAGTTCAAAATTGAAAG+TGG | + | chr5.4:22993297-22993316 | MS.gene44279:CDS | 25.0% |
| ! | ACTAATATGACACATTGATA+CGG | - | chr5.4:22992059-22992078 | None:intergenic | 25.0% |
| ! | AGTCCTATATTATTTGAACA+TGG | - | chr5.4:22994247-22994266 | None:intergenic | 25.0% |
| ! | CATGATGAATTTGATGAAAA+TGG | + | chr5.4:22994901-22994920 | MS.gene44279:CDS | 25.0% |
| ! | CTACCATGTTCAAATAATAT+AGG | + | chr5.4:22994241-22994260 | MS.gene44279:intron | 25.0% |
| ! | TATTAATAGATCATTCACTG+TGG | - | chr5.4:22993080-22993099 | None:intergenic | 25.0% |
| ! | TCATTTGTATAAGAAAGTGA+AGG | - | chr5.4:22993103-22993122 | None:intergenic | 25.0% |
| ! | TGAAAATTTATGCATCTAGA+TGG | + | chr5.4:22992795-22992814 | MS.gene44279:CDS | 25.0% |
| ! | TGAATTTGATGAAAATGGTT+TGG | + | chr5.4:22994906-22994925 | MS.gene44279:CDS | 25.0% |
| ! | TGATCTCATAATTCAAGTAA+GGG | + | chr5.4:22991837-22991856 | MS.gene44279:CDS | 25.0% |
| ! | TTACCAAATATTTCCAAGAA+CGG | + | chr5.4:22992818-22992837 | MS.gene44279:CDS | 25.0% |
| ! | TTCAACATTTATTGGAAGTT+AGG | + | chr5.4:22993802-22993821 | MS.gene44279:intron | 25.0% |
| !!! | TAACATGTACTTTTAAGTTC+AGG | + | chr5.4:22994097-22994116 | MS.gene44279:intron | 25.0% |
| !!! | TTATGTGTTTTTTAACATGC+AGG | + | chr5.4:22994522-22994541 | MS.gene44279:intron | 25.0% |
| AAAGATGGAATTAGCAAGAA+GGG | + | chr5.4:22993033-22993052 | MS.gene44279:CDS | 30.0% | |
| AACTTAGCATAGACCTTTAT+TGG | + | chr5.4:22992711-22992730 | MS.gene44279:CDS | 30.0% | |
| AAGGGGAAATTGTTAATAGA+AGG | - | chr5.4:22993617-22993636 | None:intergenic | 30.0% | |
| AAGTAGATATCTTCTTCACA+AGG | + | chr5.4:22991861-22991880 | MS.gene44279:CDS | 30.0% | |
| AATCAGGAAGTTGAACTATT+TGG | - | chr5.4:22992265-22992284 | None:intergenic | 30.0% | |
| ACAATGATAGCAATCAAATC+TGG | + | chr5.4:22992737-22992756 | MS.gene44279:CDS | 30.0% | |
| ACTTGAACAACAACTCTTAA+AGG | - | chr5.4:22994655-22994674 | None:intergenic | 30.0% | |
| ACTTTGAATTACAAGAGAGT+AGG | + | chr5.4:22993257-22993276 | MS.gene44279:CDS | 30.0% | |
| AGAATCAAATCAGGAAGTAA+AGG | + | chr5.4:22992665-22992684 | MS.gene44279:CDS | 30.0% | |
| AGGATATGAAACAGAATTAG+TGG | + | chr5.4:22993744-22993763 | MS.gene44279:intron | 30.0% | |
| AGGGGAAATTGTTAATAGAA+GGG | - | chr5.4:22993616-22993635 | None:intergenic | 30.0% | |
| ATGACTGAAGAAGTTGAAAA+AGG | + | chr5.4:22992398-22992417 | MS.gene44279:CDS | 30.0% | |
| CATCATTATAGAGTTCATTG+AGG | - | chr5.4:22994077-22994096 | None:intergenic | 30.0% | |
| CTATCATTGTTCTCCAATAA+AGG | - | chr5.4:22992727-22992746 | None:intergenic | 30.0% | |
| CTTGAACAACAACTCTTAAA+GGG | - | chr5.4:22994654-22994673 | None:intergenic | 30.0% | |
| GAAAGTTTGAGAATCAAATC+AGG | + | chr5.4:22992656-22992675 | MS.gene44279:CDS | 30.0% | |
| GACTAATAAAAACTAGGCTA+TGG | + | chr5.4:22994263-22994282 | MS.gene44279:intron | 30.0% | |
| GATCTCATAATTCAAGTAAG+GGG | + | chr5.4:22991838-22991857 | MS.gene44279:CDS | 30.0% | |
| GTGATCTCATAATTCAAGTA+AGG | + | chr5.4:22991836-22991855 | MS.gene44279:CDS | 30.0% | |
| TACCTTGAGATAAATGTCAA+TGG | - | chr5.4:22993449-22993468 | None:intergenic | 30.0% | |
| TGATCATATCTTGCAAATTC+TGG | - | chr5.4:22993409-22993428 | None:intergenic | 30.0% | |
| TTAATAGAAGGGATTAAGCA+CGG | - | chr5.4:22993605-22993624 | None:intergenic | 30.0% | |
| TTTCAACTTCTTCAGTCATT+TGG | - | chr5.4:22992397-22992416 | None:intergenic | 30.0% | |
| TTTCCGTTCTTGGAAATATT+TGG | - | chr5.4:22992824-22992843 | None:intergenic | 30.0% | |
| ! | GTTCTTTTCTTTGTATATGC+AGG | + | chr5.4:22991791-22991810 | MS.gene44279:intron | 30.0% |
| !! | AATGGTTTGGTAAATGATGA+TGG | + | chr5.4:22994919-22994938 | MS.gene44279:CDS | 30.0% |
| !! | AGAGTTGAAGACTTTGATTT+TGG | - | chr5.4:22994859-22994878 | None:intergenic | 30.0% |
| !! | GAAGAAAATTTTCTAGCATG+AGG | + | chr5.4:22994285-22994304 | MS.gene44279:intron | 30.0% |
| !! | TGAAGAAGCATTGAGAATAT+TGG | - | chr5.4:22993008-22993027 | None:intergenic | 30.0% |
| !! | TGTCATATTAGTGTTGTTTC+TGG | + | chr5.4:22992067-22992086 | MS.gene44279:intron | 30.0% |
| !! | TTGGTAAATGATGATGGAAT+TGG | + | chr5.4:22994925-22994944 | MS.gene44279:CDS | 30.0% |
| !!! | AGCATTTTTTTAGGTTGTGT+AGG | - | chr5.4:22994985-22995004 | None:intergenic | 30.0% |
| !!! | TATTTTAAGGTCAAGAGAGT+TGG | - | chr5.4:22993774-22993793 | None:intergenic | 30.0% |
| AAACTTGATTCACAAGCTTG+AGG | + | chr5.4:22992421-22992440 | MS.gene44279:CDS | 35.0% | |
| AAGGTTCCTTCAAATCTCAT+TGG | + | chr5.4:22992764-22992783 | MS.gene44279:CDS | 35.0% | |
| AATAGTTTCAATGCATCTGC+TGG | - | chr5.4:22992546-22992565 | None:intergenic | 35.0% | |
| ACGTATTGTTACATTTGGGA+AGG | + | chr5.4:22992010-22992029 | MS.gene44279:intron | 35.0% | |
| AGCCATTGACATTTATCTCA+AGG | + | chr5.4:22993444-22993463 | MS.gene44279:CDS | 35.0% | |
| AGCTCTACTACAAGTATTCA+AGG | + | chr5.4:22994799-22994818 | MS.gene44279:CDS | 35.0% | |
| ATACATGAATATGTGACTGC+AGG | + | chr5.4:22994457-22994476 | MS.gene44279:intron | 35.0% | |
| ATGATAGCAATCAAATCTGG+TGG | + | chr5.4:22992740-22992759 | MS.gene44279:CDS | 35.0% | |
| ATTAGTAGTTCGTTACGAGA+AGG | - | chr5.4:22993636-22993655 | None:intergenic | 35.0% | |
| ATTCTGAGCATAATCTTTGC+AGG | - | chr5.4:22992220-22992239 | None:intergenic | 35.0% | |
| ATTTGTGTTTGTGTCTGTGT+CGG | + | chr5.4:22992103-22992122 | MS.gene44279:intron | 35.0% | |
| CAAAGATGGAATTAGCAAGA+AGG | + | chr5.4:22993032-22993051 | MS.gene44279:CDS | 35.0% | |
| CACAAACACAAATGCAAACA+CGG | - | chr5.4:22992096-22992115 | None:intergenic | 35.0% | |
| CACACTATCAATTCATGAGA+AGG | - | chr5.4:22993990-22994009 | None:intergenic | 35.0% | |
| CATTATAGAGTTCATTGAGG+TGG | - | chr5.4:22994074-22994093 | None:intergenic | 35.0% | |
| CATTTATTGGAAGTTAGGTG+TGG | + | chr5.4:22993807-22993826 | MS.gene44279:intron | 35.0% | |
| CTTCTTTCTATTTCCGTTCT+TGG | - | chr5.4:22992834-22992853 | None:intergenic | 35.0% | |
| GCGAAATAACTTCAAAGCAT+AGG | + | chr5.4:22992897-22992916 | MS.gene44279:CDS | 35.0% | |
| GTATTCAAGGTGAGGATAAT+TGG | + | chr5.4:22994812-22994831 | MS.gene44279:CDS | 35.0% | |
| TACAGTCTATGATGTTGAGT+TGG | + | chr5.4:22993123-22993142 | MS.gene44279:CDS | 35.0% | |
| TACTACAAGTATTCAAGGTG+AGG | + | chr5.4:22994804-22994823 | MS.gene44279:CDS | 35.0% | |
| TCAAAAGTCTTCAACGATCT+CGG | - | chr5.4:22993205-22993224 | None:intergenic | 35.0% | |
| TCAAATCAGGAAGTAAAGGA+TGG | + | chr5.4:22992669-22992688 | MS.gene44279:CDS | 35.0% | |
| TCTACACTTCAGAAGCTATA+AGG | + | chr5.4:22991687-22991706 | MS.gene44279:CDS | 35.0% | |
| TCTTTCTTAATACTCGTCGA+GGG | - | chr5.4:22993578-22993597 | None:intergenic | 35.0% | |
| TGCAACTATCAGTCAAGATA+AGG | - | chr5.4:22993866-22993885 | None:intergenic | 35.0% | |
| TGCTTCTTCATCTTCAAAGA+TGG | + | chr5.4:22993018-22993037 | MS.gene44279:CDS | 35.0% | |
| TGTCACATAGTCATTCTAGA+AGG | + | chr5.4:22992603-22992622 | MS.gene44279:CDS | 35.0% | |
| TTAGTAGTTCGTTACGAGAA+GGG | - | chr5.4:22993635-22993654 | None:intergenic | 35.0% | |
| TTGAATTACAAGAGAGTAGG+AGG | + | chr5.4:22993260-22993279 | MS.gene44279:CDS | 35.0% | |
| TTGGAACAGTTCATGTTACA+AGG | + | chr5.4:22993157-22993176 | MS.gene44279:CDS | 35.0% | |
| ! | AGTTCAACTTCCTGATTTTC+CGG | + | chr5.4:22992268-22992287 | MS.gene44279:CDS | 35.0% |
| ! | ATAGTCATTCTAGAAGGATG+AGG | + | chr5.4:22992609-22992628 | MS.gene44279:CDS | 35.0% |
| ! | TAGTCATTCTAGAAGGATGA+GGG | + | chr5.4:22992610-22992629 | MS.gene44279:CDS | 35.0% |
| !! | AAAGCATTGCTTACAACACA+TGG | + | chr5.4:22994742-22994761 | MS.gene44279:CDS | 35.0% |
| !! | ATGCTTTGAAGTTATTTCGC+TGG | - | chr5.4:22992897-22992916 | None:intergenic | 35.0% |
| !! | ATTTGGTGATGAGATGAATC+AGG | - | chr5.4:22992248-22992267 | None:intergenic | 35.0% |
| !! | CGTTGAAGACTTTTGAAAGA+AGG | + | chr5.4:22993209-22993228 | MS.gene44279:CDS | 35.0% |
| !! | TCTGAAGTGTAGAAAGTATC+TGG | - | chr5.4:22991680-22991699 | None:intergenic | 35.0% |
| !! | TGAGTTGGTGATGACTATAT+TGG | + | chr5.4:22993138-22993157 | MS.gene44279:CDS | 35.0% |
| !! | TTGATGATGCATCTCCTTAT+TGG | + | chr5.4:22991746-22991765 | MS.gene44279:intron | 35.0% |
| AAGAAGGGTAGGACTTCAAT+TGG | + | chr5.4:22993048-22993067 | MS.gene44279:CDS | 40.0% | |
| AATCAGGAAGTAAAGGATGG+TGG | + | chr5.4:22992672-22992691 | MS.gene44279:CDS | 40.0% | |
| ACCTCCTGTTAGAACTCATT+CGG | + | chr5.4:22994195-22994214 | MS.gene44279:intron | 40.0% | |
| ATCAGGAAGTAAAGGATGGT+GGG | + | chr5.4:22992673-22992692 | MS.gene44279:CDS | 40.0% | |
| ATGGAATTAGCAAGAAGGGT+AGG | + | chr5.4:22993037-22993056 | MS.gene44279:CDS | 40.0% | |
| ATTGAAAGTGGCAAAGCTTG+TGG | + | chr5.4:22993309-22993328 | MS.gene44279:CDS | 40.0% | |
| CAGAACTGAACAAGAGTGAA+AGG | + | chr5.4:22994551-22994570 | MS.gene44279:CDS | 40.0% | |
| CATAAGCATTTGGATAGCAG+GGG | - | chr5.4:22992197-22992216 | None:intergenic | 40.0% | |
| CCAAATGTAACAATACGTGC+CGG | - | chr5.4:22992008-22992027 | None:intergenic | 40.0% | |
| CGGCACGTATTGTTACATTT+GGG | + | chr5.4:22992006-22992025 | MS.gene44279:intron | 40.0% | |
| CTCGACGAGTATTAAGAAAG+AGG | + | chr5.4:22993577-22993596 | MS.gene44279:intron | 40.0% | |
| CTCTTTCTTAATACTCGTCG+AGG | - | chr5.4:22993579-22993598 | None:intergenic | 40.0% | |
| CTTGCAGCTACAATGTTGTA+AGG | - | chr5.4:22992356-22992375 | None:intergenic | 40.0% | |
| CTTTCACTCTTGTTCAGTTC+TGG | - | chr5.4:22994553-22994572 | None:intergenic | 40.0% | |
| GAGTTCATTGAGGTGGAAAT+CGG | - | chr5.4:22994067-22994086 | None:intergenic | 40.0% | |
| GCATAAGCATTTGGATAGCA+GGG | - | chr5.4:22992198-22992217 | None:intergenic | 40.0% | |
| GCATCACCAATGAGATTTGA+AGG | - | chr5.4:22992773-22992792 | None:intergenic | 40.0% | |
| GTCAGTCAGGCTAAAATTTC+TGG | - | chr5.4:22993842-22993861 | None:intergenic | 40.0% | |
| GTGACAAACTCACCTTTGTA+GGG | - | chr5.4:22992589-22992608 | None:intergenic | 40.0% | |
| TAGTAGTTCGTTACGAGAAG+GGG | - | chr5.4:22993634-22993653 | None:intergenic | 40.0% | |
| TCATGAGAAGGACATAGTAC+TGG | - | chr5.4:22993978-22993997 | None:intergenic | 40.0% | |
| TCTTTGCAGGCATAAGCATT+TGG | - | chr5.4:22992207-22992226 | None:intergenic | 40.0% | |
| TGAACTATGTGATGCTGAAG+AGG | - | chr5.4:22993287-22993306 | None:intergenic | 40.0% | |
| TGACTGCAAAAAGCTCTCAA+TGG | + | chr5.4:22994594-22994613 | MS.gene44279:CDS | 40.0% | |
| TGCGTTGTTGTATGTTTCGA+TGG | - | chr5.4:22994775-22994794 | None:intergenic | 40.0% | |
| TGTGACAAACTCACCTTTGT+AGG | - | chr5.4:22992590-22992609 | None:intergenic | 40.0% | |
| TGTGGTCTGAAGACTTACTA+TGG | - | chr5.4:22992486-22992505 | None:intergenic | 40.0% | |
| TTCAAAGCATAGGCTGCTAT+TGG | + | chr5.4:22992907-22992926 | MS.gene44279:CDS | 40.0% | |
| TTCAATTCTTGCATCCTCCA+TGG | + | chr5.4:22992449-22992468 | MS.gene44279:CDS | 40.0% | |
| TTGTGTGCTAAGTTCTGCTA+TGG | + | chr5.4:22992311-22992330 | MS.gene44279:CDS | 40.0% | |
| TTTGAACATGGTAGCTCAGT+TGG | - | chr5.4:22994235-22994254 | None:intergenic | 40.0% | |
| ! | ACATAGTACTGGAACTGTGA+TGG | - | chr5.4:22993967-22993986 | None:intergenic | 40.0% |
| ! | AGCTTGCTTCCAACTGAAAA+AGG | + | chr5.4:22992941-22992960 | MS.gene44279:CDS | 40.0% |
| ! | AGTCAGGCTAAAATTTCTGG+TGG | - | chr5.4:22993839-22993858 | None:intergenic | 40.0% |
| ! | GAGGATAATTGGAGTGTTTC+TGG | + | chr5.4:22994823-22994842 | MS.gene44279:CDS | 40.0% |
| ! | GTACTGACGCTTCAAATTGA+AGG | + | chr5.4:22991956-22991975 | MS.gene44279:intron | 40.0% |
| ! | GTTCAACTTCCTGATTTTCC+GGG | + | chr5.4:22992269-22992288 | MS.gene44279:CDS | 40.0% |
| ! | TGAGGCGTCACTATAATGAT+TGG | + | chr5.4:22994303-22994322 | MS.gene44279:intron | 40.0% |
| ! | TTGTGTAGGAAGAGCACAAA+TGG | - | chr5.4:22994971-22994990 | None:intergenic | 40.0% |
| !! | GTCAGGCTAAAATTTCTGGT+GGG | - | chr5.4:22993838-22993857 | None:intergenic | 40.0% |
| !! | TCTAAGAATGAAGCTTGCTG+AGG | + | chr5.4:22994876-22994895 | MS.gene44279:CDS | 40.0% |
| !!! | GAAACAGCACCTTTTTCAGT+TGG | - | chr5.4:22992953-22992972 | None:intergenic | 40.0% |
| AAAGTCTTCAACGATCTCGG+AGG | - | chr5.4:22993202-22993221 | None:intergenic | 45.0% | |
| AAGGGTAGGACTTCAATTGG+AGG | + | chr5.4:22993051-22993070 | MS.gene44279:CDS | 45.0% | |
| AAGTCTTCAACGATCTCGGA+GGG | - | chr5.4:22993201-22993220 | None:intergenic | 45.0% | |
| AAGTGGCAAAGCTTGTGGAT+AGG | + | chr5.4:22993314-22993333 | MS.gene44279:CDS | 45.0% | |
| ACAAACTCACCTTTGTAGGG+TGG | - | chr5.4:22992586-22992605 | None:intergenic | 45.0% | |
| AGCAATCAAATCTGGTGGCA+AGG | + | chr5.4:22992745-22992764 | MS.gene44279:CDS | 45.0% | |
| ATTCTTGCATCCTCCATGGT+TGG | + | chr5.4:22992453-22992472 | MS.gene44279:CDS | 45.0% | |
| CATCTCTTGCAACTTCCTGA+AGG | - | chr5.4:22993342-22993361 | None:intergenic | 45.0% | |
| CATTCACGCAGTCAGTTCAT+TGG | + | chr5.4:22994349-22994368 | MS.gene44279:intron | 45.0% | |
| CATTTGTGGTCCGAAGACTT+GGG | + | chr5.4:22992515-22992534 | MS.gene44279:CDS | 45.0% | |
| CCGGCACGTATTGTTACATT+TGG | + | chr5.4:22992005-22992024 | MS.gene44279:intron | 45.0% | |
| CTATGGTATCCTTCCAACCA+TGG | - | chr5.4:22992469-22992488 | None:intergenic | 45.0% | |
| GCTGGTAATTCCCAAGTCTT+CGG | - | chr5.4:22992528-22992547 | None:intergenic | 45.0% | |
| GGCATAAGCATTTGGATAGC+AGG | - | chr5.4:22992199-22992218 | None:intergenic | 45.0% | |
| GTAGCTCAGTGATACGAGTT+GGG | + | chr5.4:22993551-22993570 | MS.gene44279:intron | 45.0% | |
| GTCAAGATAAGGAGTCAGTC+AGG | - | chr5.4:22993855-22993874 | None:intergenic | 45.0% | |
| GTCAGTTCATTGGTAGGTGT+TGG | + | chr5.4:22994359-22994378 | MS.gene44279:intron | 45.0% | |
| GTCTGAGTCTAACTCAGACT+CGG | + | chr5.4:22992871-22992890 | MS.gene44279:CDS | 45.0% | |
| GTCTGAGTTAGACTCAGACT+CGG | - | chr5.4:22992870-22992889 | None:intergenic | 45.0% | |
| TGAAAGAAGGCGATCACGTT+CGG | + | chr5.4:22993222-22993241 | MS.gene44279:CDS | 45.0% | |
| TGTAGCTCAGTGATACGAGT+TGG | + | chr5.4:22993550-22993569 | MS.gene44279:intron | 45.0% | |
| ! | ACCGAATGAGTTCTAACAGG+AGG | - | chr5.4:22994199-22994218 | None:intergenic | 45.0% |
| ! | CCACAAATGCAACGCTTTTG+TGG | - | chr5.4:22992504-22992523 | None:intergenic | 45.0% |
| ! | GACACCGAATGAGTTCTAAC+AGG | - | chr5.4:22994202-22994221 | None:intergenic | 45.0% |
| ! | TGAGTTCTAACAGGAGGTTC+TGG | - | chr5.4:22994193-22994212 | None:intergenic | 45.0% |
| ! | TGGTGATGAGATGAATCAGG+AGG | - | chr5.4:22992245-22992264 | None:intergenic | 45.0% |
| !! | CCACAAAAGCGTTGCATTTG+TGG | + | chr5.4:22992501-22992520 | MS.gene44279:CDS | 45.0% |
| !! | GGTGTTGGCTCAAAATTCGA+CGG | + | chr5.4:22994374-22994393 | MS.gene44279:intron | 45.0% |
| AGTCTTGAGCCACCCTACAA+AGG | + | chr5.4:22992574-22992593 | MS.gene44279:CDS | 50.0% | |
| CAAGCTAGAGCAGCATCATC+TGG | + | chr5.4:22994688-22994707 | MS.gene44279:CDS | 50.0% | |
| CACGCAGTCAGTTCATTGGT+AGG | + | chr5.4:22994353-22994372 | MS.gene44279:intron | 50.0% | |
| GCATTTGTGGTCCGAAGACT+TGG | + | chr5.4:22992514-22992533 | MS.gene44279:CDS | 50.0% | |
| GCTTGTGGATAGGTACCTTC+AGG | + | chr5.4:22993324-22993343 | MS.gene44279:CDS | 50.0% | |
| GTCAGACACTTACACGACAC+CGG | + | chr5.4:22991986-22992005 | MS.gene44279:intron | 50.0% | |
| TCAAATGCTTCCACTCCACC+CGG | - | chr5.4:22992290-22992309 | None:intergenic | 50.0% | |
| TGGTATCCTTCCAACCATGG+AGG | - | chr5.4:22992466-22992485 | None:intergenic | 50.0% | |
| TTGCATCCTCCATGGTTGGA+AGG | + | chr5.4:22992457-22992476 | MS.gene44279:CDS | 50.0% | |
| ! | AATGGAAGCGTGCATGCATG+CGG | + | chr5.4:22994612-22994631 | MS.gene44279:CDS | 50.0% |
| ! | ACATGGTAGCTCAGTTGGTG+AGG | - | chr5.4:22994230-22994249 | None:intergenic | 50.0% |
| ! | CAACTTCCTGATTTTCCGGG+TGG | + | chr5.4:22992272-22992291 | MS.gene44279:CDS | 50.0% |
| GAACTGACTGCGTGAATGCG+TGG | - | chr5.4:22994347-22994366 | None:intergenic | 55.0% | |
| GCTAGAGCAGCATCATCTGG+TGG | + | chr5.4:22994691-22994710 | MS.gene44279:CDS | 55.0% | |
| TCCACTCCACCCGGAAAATC+AGG | - | chr5.4:22992281-22992300 | None:intergenic | 55.0% | |
| ! | AACGATCTCGGAGGGCTAGT+TGG | - | chr5.4:22993193-22993212 | None:intergenic | 55.0% |
| ! | TCCTGATTTTCCGGGTGGAG+TGG | + | chr5.4:22992277-22992296 | MS.gene44279:CDS | 55.0% |
| !! | GATCTCGGAGGGCTAGTTGG+TGG | - | chr5.4:22993190-22993209 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22991650 | 22995050 | 22991650 | ID=MS.gene44279 |
| chr5.4 | mRNA | 22991650 | 22995050 | 22991650 | ID=MS.gene44279.t1;Parent=MS.gene44279 |
| chr5.4 | exon | 22991650 | 22991708 | 22991650 | ID=MS.gene44279.t1.exon1;Parent=MS.gene44279.t1 |
| chr5.4 | CDS | 22991650 | 22991708 | 22991650 | ID=cds.MS.gene44279.t1;Parent=MS.gene44279.t1 |
| chr5.4 | exon | 22991813 | 22991882 | 22991813 | ID=MS.gene44279.t1.exon2;Parent=MS.gene44279.t1 |
| chr5.4 | CDS | 22991813 | 22991882 | 22991813 | ID=cds.MS.gene44279.t1;Parent=MS.gene44279.t1 |
| chr5.4 | exon | 22992191 | 22993465 | 22992191 | ID=MS.gene44279.t1.exon3;Parent=MS.gene44279.t1 |
| chr5.4 | CDS | 22992191 | 22993465 | 22992191 | ID=cds.MS.gene44279.t1;Parent=MS.gene44279.t1 |
| chr5.4 | exon | 22994544 | 22995050 | 22994544 | ID=MS.gene44279.t1.exon4;Parent=MS.gene44279.t1 |
| chr5.4 | CDS | 22994544 | 22995050 | 22994544 | ID=cds.MS.gene44279.t1;Parent=MS.gene44279.t1 |
| Gene Sequence |
| Protein sequence |
