Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019792.t1 | XP_013451828.1 | 98.8 | 339 | 4 | 0 | 1 | 339 | 1 | 339 | 1.10E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019792.t1 | P46276 | 87.5 | 337 | 42 | 0 | 1 | 337 | 1 | 337 | 1.5e-178 | 626.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019792.t1 | G8A0S6 | 98.8 | 339 | 4 | 0 | 1 | 339 | 1 | 339 | 7.9e-197 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene019792.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019792 | MS.gene90221 | PPI |
| MS.gene019792 | MS.gene068024 | PPI |
| MS.gene019792 | MS.gene028481 | PPI |
| MS.gene019792 | MS.gene053579 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019792.t1 | MTR_6g035305 | 98.820 | 339 | 4 | 0 | 1 | 339 | 1 | 339 | 0.0 | 698 |
| MS.gene019792.t1 | MTR_2g008030 | 84.776 | 335 | 51 | 0 | 1 | 335 | 1 | 335 | 0.0 | 599 |
| MS.gene019792.t1 | MTR_7g066120 | 50.292 | 342 | 152 | 2 | 11 | 335 | 71 | 411 | 9.66e-115 | 338 |
| MS.gene019792.t1 | MTR_0776s0010 | 41.159 | 328 | 187 | 4 | 7 | 328 | 284 | 611 | 9.33e-84 | 277 |
| MS.gene019792.t1 | MTR_4g093620 | 40.836 | 311 | 161 | 6 | 32 | 332 | 87 | 384 | 3.68e-73 | 232 |
| MS.gene019792.t1 | MTR_3g070100 | 28.625 | 269 | 164 | 8 | 67 | 327 | 116 | 364 | 4.15e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019792.t1 | AT1G43670 | 85.841 | 339 | 48 | 0 | 1 | 339 | 1 | 339 | 0.0 | 617 |
| MS.gene019792.t1 | AT3G54050 | 50.292 | 342 | 150 | 3 | 11 | 335 | 79 | 417 | 1.35e-114 | 338 |
| MS.gene019792.t1 | AT3G54050 | 50.292 | 342 | 150 | 3 | 11 | 335 | 79 | 417 | 1.35e-114 | 338 |
| MS.gene019792.t1 | AT5G64380 | 40.836 | 311 | 165 | 7 | 32 | 332 | 89 | 390 | 3.59e-74 | 234 |
| MS.gene019792.t1 | AT3G55800 | 29.304 | 273 | 157 | 8 | 67 | 327 | 123 | 371 | 1.09e-19 | 89.4 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATAGCTACCAAGAAATA+TGG | 0.228525 | 6.2:-26099583 | None:intergenic |
| TTGCTTAATAACATTGTTCT+TGG | 0.232374 | 6.2:+26092706 | MS.gene019792:CDS |
| ACCACTGGAAGTGGTGTTAA+TGG | 0.234751 | 6.2:+26095864 | MS.gene019792:CDS |
| GAATAAATCTTGCCTTTCTT+TGG | 0.239412 | 6.2:-26096658 | None:intergenic |
| CCTAACTCACCCTGACATTA+AGG | 0.279021 | 6.2:+26095920 | MS.gene019792:CDS |
| GAAAGATCTCCCATATTTCT+TGG | 0.282491 | 6.2:+26099573 | MS.gene019792:CDS |
| CTTCCCAATGTCCTTCTTGA+TGG | 0.290934 | 6.2:+26098502 | MS.gene019792:CDS |
| GTGAAATCTCCACGTGATTC+AGG | 0.296233 | 6.2:-26092679 | None:intergenic |
| GCGAAGCTCATTGGACTTGC+AGG | 0.301432 | 6.2:+26094136 | MS.gene019792:CDS |
| CCTTAATGTCAGGGTGAGTT+AGG | 0.309718 | 6.2:-26095920 | None:intergenic |
| ATGCATTACCCTTTCCTTGC+CGG | 0.313636 | 6.2:-26098549 | None:intergenic |
| GCAAAGTCTCTAAGATATAT+TGG | 0.314481 | 6.2:+26096853 | MS.gene019792:CDS |
| AATAAATCTTGCCTTTCTTT+GGG | 0.339648 | 6.2:-26096657 | None:intergenic |
| ATTCAACACAAAACGTGTTA+TGG | 0.348871 | 6.2:-26092641 | None:intergenic |
| TGCAGAACATCTTCTATGAT+TGG | 0.359209 | 6.2:-26095662 | None:intergenic |
| GATCTTTCATGCAACTTTGT+TGG | 0.362331 | 6.2:-26099558 | None:intergenic |
| GTTCATCGTACATTGCTATA+TGG | 0.377460 | 6.2:+26098313 | MS.gene019792:CDS |
| TTCACCCTTGACCCTTCTCT+TGG | 0.378219 | 6.2:+26095888 | MS.gene019792:CDS |
| CATCTTCTATGATTGGTTCA+TGG | 0.382130 | 6.2:-26095655 | None:intergenic |
| AAAGAAAGGCAAGATTTATT+CGG | 0.384048 | 6.2:+26096660 | MS.gene019792:CDS |
| CGGAGTATTACCTTAATGTC+AGG | 0.406069 | 6.2:-26095930 | None:intergenic |
| AGTAGGACCATCCCAGTTCT+TGG | 0.413154 | 6.2:-26096698 | None:intergenic |
| ACGAAGGGAACGCCAAGAAC+TGG | 0.415047 | 6.2:+26096686 | MS.gene019792:CDS |
| TGCAGGAGAGACCAATGTTC+AGG | 0.427688 | 6.2:+26094153 | MS.gene019792:CDS |
| ATGTTGGAGGAGCCGTCTAA+TGG | 0.431159 | 6.2:-26095251 | None:intergenic |
| TTTGTCAGCAGGGTACAAAA+AGG | 0.440471 | 6.2:-26098341 | None:intergenic |
| GCTGGTCTTGCGAAGCTCAT+TGG | 0.447240 | 6.2:+26094127 | MS.gene019792:CDS |
| AATGTCCTTCTTGATGGAAC+AGG | 0.459315 | 6.2:+26098508 | MS.gene019792:CDS |
| GGCTTTCACCGGCAAGGAAA+GGG | 0.474657 | 6.2:+26098541 | MS.gene019792:CDS |
| AGCCTTGCAAAACACCTCAT+TGG | 0.482303 | 6.2:-26094733 | None:intergenic |
| ATATATCTTAGAGACTTTGC+TGG | 0.483827 | 6.2:-26096850 | None:intergenic |
| TCATAGCTACCAAGAAATAT+GGG | 0.491600 | 6.2:-26099582 | None:intergenic |
| GCTGCCAACATGTTCTTCCC+TGG | 0.493174 | 6.2:-26095686 | None:intergenic |
| ATTGATTGTGGTGTTTCCAT+TGG | 0.496286 | 6.2:+26095272 | MS.gene019792:CDS |
| AACAATGTTATTAAGCAAGA+TGG | 0.499875 | 6.2:-26092701 | None:intergenic |
| GTTCCATCAAGAAGGACATT+GGG | 0.503823 | 6.2:-26098505 | None:intergenic |
| GATGGAACAGGCAGGAGGAC+AGG | 0.504743 | 6.2:+26098520 | MS.gene019792:CDS |
| AGGCTTTCACCGGCAAGGAA+AGG | 0.509795 | 6.2:+26098540 | MS.gene019792:CDS |
| GCAGCTGGTTATTGCATGTA+CGG | 0.516581 | 6.2:+26095704 | MS.gene019792:CDS |
| TAGAAGATGTTCTGCAACCA+GGG | 0.516755 | 6.2:+26095669 | MS.gene019792:CDS |
| AGGATAAACTCGCCAAGAGA+AGG | 0.516852 | 6.2:-26095900 | None:intergenic |
| AAATGCAAGTTTCCAACAGA+TGG | 0.529309 | 6.2:+26096823 | MS.gene019792:CDS |
| GGGAAGAACATGTTGGCAGC+TGG | 0.533032 | 6.2:+26095689 | MS.gene019792:CDS |
| TCTTTGCAGATCCCAAAGAA+AGG | 0.537179 | 6.2:+26096646 | MS.gene019792:intron |
| CGAAGGGAACGCCAAGAACT+GGG | 0.540028 | 6.2:+26096687 | MS.gene019792:CDS |
| ATAGAAGATGTTCTGCAACC+AGG | 0.541839 | 6.2:+26095668 | MS.gene019792:CDS |
| TGTTCCATCAAGAAGGACAT+TGG | 0.542151 | 6.2:-26098506 | None:intergenic |
| GGGAACACTTACCTGAACAT+TGG | 0.543127 | 6.2:-26094164 | None:intergenic |
| GGGCGAAGAACAGAAGAAGC+TGG | 0.548204 | 6.2:+26094701 | MS.gene019792:intron |
| GCAGGAGGACAGGCTTTCAC+CGG | 0.548518 | 6.2:+26098530 | MS.gene019792:CDS |
| AGATGAGGATGCAATATTCG+TGG | 0.548560 | 6.2:+26094870 | MS.gene019792:CDS |
| TTTGCTGGTGAACCATCTGT+TGG | 0.549730 | 6.2:-26096835 | None:intergenic |
| TTGCAGTTTGTGATAACCAC+TGG | 0.553944 | 6.2:+26095849 | MS.gene019792:intron |
| TCCTGCCTGTTCCATCAAGA+AGG | 0.554789 | 6.2:-26098513 | None:intergenic |
| GGAAACACCACAATCAATGT+TGG | 0.562157 | 6.2:-26095267 | None:intergenic |
| TAGGGATCATACAGTTCCAA+TGG | 0.562520 | 6.2:-26095288 | None:intergenic |
| AGATTTATTCGGTGAACGAA+GGG | 0.563706 | 6.2:+26096671 | MS.gene019792:CDS |
| CAAAGCTCTTTATGCTGCAG+AGG | 0.565129 | 6.2:+26099620 | MS.gene019792:CDS |
| CTTGGTTTCTGAAGAAGATG+AGG | 0.575814 | 6.2:+26094855 | MS.gene019792:CDS |
| TGCAAGGCTTTGATAAGCAG+TGG | 0.579114 | 6.2:+26094747 | MS.gene019792:CDS |
| AAGATTTATTCGGTGAACGA+AGG | 0.579302 | 6.2:+26096670 | MS.gene019792:CDS |
| ACTCGCCAAGAGAAGGGTCA+AGG | 0.584729 | 6.2:-26095893 | None:intergenic |
| ACCATTAACACCACTTCCAG+TGG | 0.586134 | 6.2:-26095865 | None:intergenic |
| GGATAAACTCGCCAAGAGAA+GGG | 0.588099 | 6.2:-26095899 | None:intergenic |
| AGTCTCTAAGATATATTGGA+AGG | 0.589845 | 6.2:+26096857 | MS.gene019792:CDS |
| TCCTTCTTGATGGAACAGGC+AGG | 0.593282 | 6.2:+26098512 | MS.gene019792:CDS |
| CATGTACGGAAGCTCTTGCA+CGG | 0.593772 | 6.2:+26095718 | MS.gene019792:CDS |
| CTCGCCAAGAGAAGGGTCAA+GGG | 0.597914 | 6.2:-26095892 | None:intergenic |
| TTTGTGATAACCACTGGAAG+TGG | 0.598951 | 6.2:+26095855 | MS.gene019792:CDS |
| TGTTTGTTCTGCTGTTAACA+AGG | 0.601443 | 6.2:+26092738 | MS.gene019792:CDS |
| AACACCACAATCAATGTTGG+AGG | 0.603640 | 6.2:-26095264 | None:intergenic |
| GGAGTATTACCTTAATGTCA+GGG | 0.609866 | 6.2:-26095929 | None:intergenic |
| AGAGTCCAAATGGAAAACTT+CGG | 0.610193 | 6.2:+26098365 | MS.gene019792:CDS |
| TTCGTGGAGCCTACGCAGCG+TGG | 0.611130 | 6.2:+26094886 | MS.gene019792:CDS |
| GGCTCCTCCAACATTGATTG+TGG | 0.614292 | 6.2:+26095260 | MS.gene019792:CDS |
| AGGACAGGCTTTCACCGGCA+AGG | 0.624102 | 6.2:+26098535 | MS.gene019792:CDS |
| GCTGGATGTTCTTTCCAATG+AGG | 0.626395 | 6.2:+26094719 | MS.gene019792:CDS |
| GGGAACGCCAAGAACTGGGA+TGG | 0.633840 | 6.2:+26096691 | MS.gene019792:CDS |
| TACGATGTGCATCTGCGCTG+TGG | 0.637166 | 6.2:-26092606 | None:intergenic |
| ATTCATACGTACGCAGCAGT+AGG | 0.650826 | 6.2:-26096715 | None:intergenic |
| CATCGTACATTGCTATATGG+AGG | 0.654004 | 6.2:+26098316 | MS.gene019792:CDS |
| GCAACCAGGGAAGAACATGT+TGG | 0.656103 | 6.2:+26095682 | MS.gene019792:CDS |
| AACAACTTTCCACGCTGCGT+AGG | 0.673593 | 6.2:-26094895 | None:intergenic |
| TGGTAGCTATGATGATATCG+AGG | 0.676941 | 6.2:+26099593 | MS.gene019792:CDS |
| TTCTTGATGGAACAGGCAGG+AGG | 0.688021 | 6.2:+26098515 | MS.gene019792:CDS |
| TCTAAGCATCCTGAATCACG+TGG | 0.704682 | 6.2:+26092670 | MS.gene019792:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 26092601 | 26099650 | 26092601 | ID=MS.gene019792 |
| chr6.2 | mRNA | 26092601 | 26099650 | 26092601 | ID=MS.gene019792.t1;Parent=MS.gene019792 |
| chr6.2 | exon | 26092601 | 26092759 | 26092601 | ID=MS.gene019792.t1.exon1;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26092601 | 26092759 | 26092601 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26094127 | 26094174 | 26094127 | ID=MS.gene019792.t1.exon2;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26094127 | 26094174 | 26094127 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26094702 | 26094776 | 26094702 | ID=MS.gene019792.t1.exon3;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26094702 | 26094776 | 26094702 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26094850 | 26094911 | 26094850 | ID=MS.gene019792.t1.exon4;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26094850 | 26094911 | 26094850 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26095232 | 26095298 | 26095232 | ID=MS.gene019792.t1.exon5;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26095232 | 26095298 | 26095232 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26095626 | 26095739 | 26095626 | ID=MS.gene019792.t1.exon6;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26095626 | 26095739 | 26095626 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26095855 | 26095941 | 26095855 | ID=MS.gene019792.t1.exon7;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26095855 | 26095941 | 26095855 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26096655 | 26096725 | 26096655 | ID=MS.gene019792.t1.exon8;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26096655 | 26096725 | 26096655 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26096813 | 26096878 | 26096813 | ID=MS.gene019792.t1.exon9;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26096813 | 26096878 | 26096813 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26098300 | 26098386 | 26098300 | ID=MS.gene019792.t1.exon10;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26098300 | 26098386 | 26098300 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26098487 | 26098562 | 26098487 | ID=MS.gene019792.t1.exon11;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26098487 | 26098562 | 26098487 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| chr6.2 | exon | 26099543 | 26099650 | 26099543 | ID=MS.gene019792.t1.exon12;Parent=MS.gene019792.t1 |
| chr6.2 | CDS | 26099543 | 26099650 | 26099543 | ID=cds.MS.gene019792.t1;Parent=MS.gene019792.t1 |
| Gene Sequence |
| Protein sequence |