Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028481.t1 | XP_003608394.1 | 95.6 | 362 | 12 | 1 | 1 | 358 | 37 | 398 | 4.50E-193 | 683.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028481.t1 | Q07204 | 47.2 | 320 | 150 | 6 | 44 | 345 | 91 | 409 | 8.1e-74 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028481.t1 | G7JV43 | 95.6 | 362 | 12 | 1 | 1 | 358 | 37 | 398 | 3.3e-193 | 683.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055116 | MS.gene028481 | PPI |
| MS.gene94785 | MS.gene028481 | PPI |
| MS.gene48151 | MS.gene028481 | PPI |
| MS.gene84575 | MS.gene028481 | PPI |
| MS.gene80354 | MS.gene028481 | PPI |
| MS.gene028481 | MS.gene85727 | PPI |
| MS.gene028481 | MS.gene03323 | PPI |
| MS.gene019792 | MS.gene028481 | PPI |
| MS.gene028481 | MS.gene46018 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028481.t1 | MTR_4g093620 | 95.580 | 362 | 12 | 1 | 1 | 358 | 37 | 398 | 0.0 | 702 |
| MS.gene028481.t1 | MTR_7g066120 | 44.379 | 338 | 165 | 7 | 30 | 345 | 73 | 409 | 5.35e-90 | 276 |
| MS.gene028481.t1 | MTR_2g008030 | 41.801 | 311 | 156 | 7 | 47 | 343 | 32 | 331 | 6.51e-74 | 233 |
| MS.gene028481.t1 | MTR_6g035305 | 44.737 | 266 | 132 | 4 | 87 | 344 | 74 | 332 | 1.07e-72 | 229 |
| MS.gene028481.t1 | MTR_0776s0010 | 37.419 | 310 | 175 | 6 | 45 | 340 | 307 | 611 | 2.42e-55 | 196 |
| MS.gene028481.t1 | MTR_3g070100 | 26.148 | 283 | 170 | 12 | 84 | 351 | 120 | 378 | 1.70e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028481.t1 | AT5G64380 | 76.111 | 360 | 75 | 3 | 5 | 358 | 50 | 404 | 0.0 | 555 |
| MS.gene028481.t1 | AT3G54050 | 46.417 | 321 | 152 | 6 | 44 | 345 | 96 | 415 | 2.02e-90 | 277 |
| MS.gene028481.t1 | AT3G54050 | 46.417 | 321 | 152 | 6 | 44 | 345 | 96 | 415 | 2.02e-90 | 277 |
| MS.gene028481.t1 | AT1G43670 | 41.640 | 317 | 168 | 7 | 47 | 353 | 32 | 341 | 8.34e-78 | 243 |
| MS.gene028481.t1 | AT3G55800 | 25.886 | 367 | 225 | 17 | 6 | 354 | 51 | 388 | 1.42e-14 | 74.7 |
Find 81 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCATTACCTTTGGCTC+TGG | 0.272844 | 4.1:+20099160 | MS.gene028481:CDS |
| TCCCTATCAGAACCACTATT+TGG | 0.303466 | 4.1:-20097614 | None:intergenic |
| AGTCTTTGGTGCAGTTTAAC+TGG | 0.305843 | 4.1:-20100116 | None:intergenic |
| ATTCACTCCAAAGTGGAAAT+AGG | 0.331263 | 4.1:+20099095 | MS.gene028481:CDS |
| CTCCATCGAACTTTGTTGTA+TGG | 0.346740 | 4.1:+20099969 | MS.gene028481:CDS |
| TACCTTGCAGAGTACTTCTT+AGG | 0.348324 | 4.1:-20099924 | None:intergenic |
| ATATATTTCCTTAAGCCTTC+AGG | 0.350818 | 4.1:-20099870 | None:intergenic |
| GTAAAACCACTATCAGTCTT+AGG | 0.354058 | 4.1:+20097404 | MS.gene028481:CDS |
| GTAGGTAAAGGAGGTGGAAT+TGG | 0.362077 | 4.1:+20097491 | MS.gene028481:CDS |
| TTGATTGGCCTGAAGGCTTA+AGG | 0.371460 | 4.1:+20099862 | MS.gene028481:CDS |
| AATTGGTGTGAATGATGATT+TGG | 0.387215 | 4.1:+20097508 | MS.gene028481:CDS |
| TTCACTCTCGACCGTTCAAC+AGG | 0.404800 | 4.1:+20099193 | MS.gene028481:CDS |
| ATGGAAGAGTTGGAAAGTTA+TGG | 0.406247 | 4.1:+20100167 | MS.gene028481:CDS |
| ACCATTGATATGCCAAATAG+TGG | 0.413324 | 4.1:+20097602 | MS.gene028481:CDS |
| CTATCAGCCTATTTCCACTT+TGG | 0.418294 | 4.1:-20099102 | None:intergenic |
| AAAAGTAAATCCTGGTTATG+AGG | 0.419122 | 4.1:+20100202 | MS.gene028481:CDS |
| GGATCTGTCACGACCACATA+TGG | 0.420264 | 4.1:-20098959 | None:intergenic |
| GATATAATATCAAGAGGCTT+TGG | 0.431354 | 4.1:-20097641 | None:intergenic |
| GGAAATAGGCTGATAGCTTC+TGG | 0.433737 | 4.1:+20099109 | MS.gene028481:CDS |
| TCCATCGAACTTTGTTGTAT+GGG | 0.439545 | 4.1:+20099970 | MS.gene028481:CDS |
| TGCCAAATAGTGGTTCTGAT+AGG | 0.439936 | 4.1:+20097612 | MS.gene028481:CDS |
| AAAGCCTCTTGATATTATAT+CGG | 0.440217 | 4.1:+20097643 | MS.gene028481:CDS |
| ACTATACTCTGCATTACCTT+TGG | 0.441406 | 4.1:+20099154 | MS.gene028481:CDS |
| TTTGGAAGACATGGAAGAGT+TGG | 0.453917 | 4.1:+20100157 | MS.gene028481:CDS |
| ATCTGGAAAAGTTGCTGTCA+TGG | 0.460073 | 4.1:+20098892 | MS.gene028481:CDS |
| TCAACAGTAGCAAGTGATGA+TGG | 0.462555 | 4.1:+20097446 | MS.gene028481:CDS |
| CCATCGAACTTTGTTGTATG+GGG | 0.479077 | 4.1:+20099971 | MS.gene028481:CDS |
| ATTGATGCATCCATACCAAC+TGG | 0.487257 | 4.1:+20099001 | MS.gene028481:CDS |
| CTTCATAAACAAGACGAAGA+TGG | 0.490062 | 4.1:-20100016 | None:intergenic |
| TCTGCATTACCTTTGGCTCT+GGG | 0.492545 | 4.1:+20099161 | MS.gene028481:CDS |
| GAAAATTGTACCAGTTGGTA+TGG | 0.498000 | 4.1:-20099011 | None:intergenic |
| GCCAAATAGTGGTTCTGATA+GGG | 0.510565 | 4.1:+20097613 | MS.gene028481:CDS |
| GTGGAGCAAGCTGGTGGGAG+AGG | 0.519722 | 4.1:+20100059 | MS.gene028481:CDS |
| TGATGGGTCTGTTACATTGA+TGG | 0.523388 | 4.1:+20097463 | MS.gene028481:CDS |
| GAAGTACCTAAGACTGATAG+TGG | 0.526082 | 4.1:-20097410 | None:intergenic |
| ACCACTATTTGGCATATCAA+TGG | 0.526712 | 4.1:-20097603 | None:intergenic |
| TAATCTGCCCACAGAGGAGA+AGG | 0.532639 | 4.1:+20099063 | MS.gene028481:CDS |
| TGCTCCACGATGAAACTAAG+AGG | 0.534585 | 4.1:-20100044 | None:intergenic |
| TTGATGGAGTATGTAGGTAA+AGG | 0.537527 | 4.1:+20097479 | MS.gene028481:CDS |
| ATGGAGTATGTAGGTAAAGG+AGG | 0.539783 | 4.1:+20097482 | MS.gene028481:CDS |
| AGCAAAGCCTTCTCCTCTGT+GGG | 0.541176 | 4.1:-20099070 | None:intergenic |
| GAGTATGTAGGTAAAGGAGG+TGG | 0.541348 | 4.1:+20097485 | MS.gene028481:CDS |
| CCAACTTGGATAAGTGATGA+TGG | 0.545731 | 4.1:+20098935 | MS.gene028481:CDS |
| CGGTATTTATAAACGCCTTG+AGG | 0.565322 | 4.1:+20099033 | MS.gene028481:CDS |
| AGTTTCATCGTGGAGCAAGC+TGG | 0.566038 | 4.1:+20100050 | MS.gene028481:CDS |
| CCATCATCACTTATCCAAGT+TGG | 0.566146 | 4.1:-20098935 | None:intergenic |
| TTTAGGGAGTTTGGAAGACA+TGG | 0.568162 | 4.1:+20100148 | MS.gene028481:CDS |
| AAGAAAATGATACACCAACT+TGG | 0.571987 | 4.1:+20098921 | MS.gene028481:CDS |
| CAACAGTAGCAAGTGATGAT+GGG | 0.579069 | 4.1:+20097447 | MS.gene028481:CDS |
| GATACTGTGAGACAAGGAAA+AGG | 0.580838 | 4.1:+20099894 | MS.gene028481:CDS |
| TTGCTGAATTCACTCCAAAG+TGG | 0.581831 | 4.1:+20099088 | MS.gene028481:CDS |
| GTTACATTGATGGAGTATGT+AGG | 0.584657 | 4.1:+20097473 | MS.gene028481:CDS |
| CAGCAAAGCCTTCTCCTCTG+TGG | 0.586371 | 4.1:-20099071 | None:intergenic |
| TGCATGTGTCCCAGAGCCAA+AGG | 0.587943 | 4.1:-20099170 | None:intergenic |
| CCCCATACAACAAAGTTCGA+TGG | 0.588449 | 4.1:-20099971 | None:intergenic |
| ATATCAATGGTATAATTGAA+AGG | 0.591706 | 4.1:-20097590 | None:intergenic |
| TTCATCGTGGAGCAAGCTGG+TGG | 0.592470 | 4.1:+20100053 | MS.gene028481:CDS |
| ATCCTAAGAAGTACTCTGCA+AGG | 0.594963 | 4.1:+20099922 | MS.gene028481:CDS |
| GTCGTGACAGATCCCCTCGA+TGG | 0.599505 | 4.1:+20098968 | MS.gene028481:CDS |
| ATACCGAAAATTGTACCAGT+TGG | 0.603945 | 4.1:-20099016 | None:intergenic |
| CATCGAACTTTGTTGTATGG+GGG | 0.606647 | 4.1:+20099972 | MS.gene028481:CDS |
| TGCTACTGTTGATGAAGATG+AGG | 0.607320 | 4.1:-20097435 | None:intergenic |
| CACACCGATATAATATCAAG+AGG | 0.613129 | 4.1:-20097647 | None:intergenic |
| TAGCATCAAACCTCATAACC+AGG | 0.619050 | 4.1:-20100212 | None:intergenic |
| GCAGATTATCTAGCTCCTCA+AGG | 0.619596 | 4.1:-20099048 | None:intergenic |
| AATATTTCGAGAACCATCGA+GGG | 0.619869 | 4.1:-20098981 | None:intergenic |
| ACAAGACGAAGATGGTCCCT+CGG | 0.621507 | 4.1:-20100008 | None:intergenic |
| GCTCCACGATGAAACTAAGA+GGG | 0.623232 | 4.1:-20100043 | None:intergenic |
| GAATGAAGTCTCCTGTTGAA+CGG | 0.631390 | 4.1:-20099204 | None:intergenic |
| GCTGGTGGGAGAGGATCCGA+TGG | 0.631525 | 4.1:+20100068 | MS.gene028481:CDS |
| AAGTGATGATGGTCCATATG+TGG | 0.632479 | 4.1:+20098946 | MS.gene028481:CDS |
| TCATCGTGGAGCAAGCTGGT+GGG | 0.634727 | 4.1:+20100054 | MS.gene028481:CDS |
| GGGGTGTGGTGATGAATCCG+AGG | 0.643718 | 4.1:+20099991 | MS.gene028481:CDS |
| CAATATTTCGAGAACCATCG+AGG | 0.656931 | 4.1:-20098982 | None:intergenic |
| AGCATTAAAATTCCTCCCCG+TGG | 0.680772 | 4.1:+20099238 | MS.gene028481:CDS |
| TATATTGATACTGTGAGACA+AGG | 0.681648 | 4.1:+20099888 | MS.gene028481:CDS |
| GCTAGATAATCTGCCCACAG+AGG | 0.689544 | 4.1:+20099057 | MS.gene028481:CDS |
| GGGTGTGGTGATGAATCCGA+GGG | 0.698882 | 4.1:+20099992 | MS.gene028481:CDS |
| GTGTATATGTTACCACGGGG+AGG | 0.699288 | 4.1:-20099250 | None:intergenic |
| ATATTTCGAGAACCATCGAG+GGG | 0.721395 | 4.1:-20098980 | None:intergenic |
| AAACCCTCTTAGTTTCATCG+TGG | 0.730924 | 4.1:+20100040 | MS.gene028481:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATATCTATCAAATT+AGG | - | chr4.1:20099324-20099343 | None:intergenic | 10.0% |
| !!! | CTATACAATATTTTTATATT+TGG | - | chr4.1:20098171-20098190 | None:intergenic | 10.0% |
| !! | ACATTAATGCTTATAATTTA+AGG | + | chr4.1:20099442-20099461 | MS.gene028481:intron | 15.0% |
| !! | TATAAAAATAAACTGAAAAC+AGG | + | chr4.1:20099620-20099639 | MS.gene028481:intron | 15.0% |
| !! | TTTCTATTAGGTTTAAATAT+CGG | - | chr4.1:20098268-20098287 | None:intergenic | 15.0% |
| !!! | ATAAAAAACACTTTAAAAGT+CGG | + | chr4.1:20097979-20097998 | MS.gene028481:intron | 15.0% |
| !! | AACTCAATATAGCATAAATT+AGG | + | chr4.1:20097955-20097974 | MS.gene028481:intron | 20.0% |
| !! | ATATCAATGGTATAATTGAA+AGG | - | chr4.1:20097593-20097612 | None:intergenic | 20.0% |
| !! | GTTCTATTAATGTTGTTAAA+TGG | + | chr4.1:20098619-20098638 | MS.gene028481:intron | 20.0% |
| !! | TAACAAAACCCTTTATTAAA+AGG | + | chr4.1:20098792-20098811 | MS.gene028481:intron | 20.0% |
| !! | TATTAGAAAATAAGTCATCT+AGG | + | chr4.1:20098121-20098140 | MS.gene028481:intron | 20.0% |
| !! | TCTGTTATATTATCAAATGT+TGG | + | chr4.1:20099354-20099373 | MS.gene028481:intron | 20.0% |
| !! | TTAAGCTATTTATCAAGAAA+GGG | - | chr4.1:20099468-20099487 | None:intergenic | 20.0% |
| !! | TTCTATTAGGTTTAAATATC+GGG | - | chr4.1:20098267-20098286 | None:intergenic | 20.0% |
| !!! | CTCTTTTTCCTTTTAATAAA+GGG | - | chr4.1:20098803-20098822 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTCCTTTTAATAA+AGG | - | chr4.1:20098804-20098823 | None:intergenic | 20.0% |
| !!! | TTCAAAATTTTGAGAATTGA+GGG | + | chr4.1:20098339-20098358 | MS.gene028481:intron | 20.0% |
| !!! | TTGATAATATAACAGAAGAT+AGG | - | chr4.1:20099350-20099369 | None:intergenic | 20.0% |
| !!! | TTTATTTTTATAAGCTCTTC+AGG | - | chr4.1:20099612-20099631 | None:intergenic | 20.0% |
| ! | AAAAAAATCATCCAAACTCA+TGG | - | chr4.1:20097693-20097712 | None:intergenic | 25.0% |
| ! | AAAGCCTCTTGATATTATAT+CGG | + | chr4.1:20097643-20097662 | MS.gene028481:CDS | 25.0% |
| ! | AATAGAACAGTTTGTCATAA+TGG | - | chr4.1:20098607-20098626 | None:intergenic | 25.0% |
| ! | GTAAGTTATATGAAAACACA+AGG | - | chr4.1:20098300-20098319 | None:intergenic | 25.0% |
| ! | GTTAAGCTATTTATCAAGAA+AGG | - | chr4.1:20099469-20099488 | None:intergenic | 25.0% |
| ! | GTTCTACAACTTAGATATAA+GGG | - | chr4.1:20098437-20098456 | None:intergenic | 25.0% |
| ! | TGTTCTACAACTTAGATATA+AGG | - | chr4.1:20098438-20098457 | None:intergenic | 25.0% |
| ! | TTAAAGTGTATATGTTACCA+CGG | - | chr4.1:20099258-20099277 | None:intergenic | 25.0% |
| ! | TTCTACAACTTAGATATAAG+GGG | - | chr4.1:20098436-20098455 | None:intergenic | 25.0% |
| ! | TTTCCACTTAAAACAACTTA+TGG | + | chr4.1:20099663-20099682 | MS.gene028481:intron | 25.0% |
| !! | GTTTGTCATAATGGAAATAT+AGG | - | chr4.1:20098598-20098617 | None:intergenic | 25.0% |
| !! | TAAGGCTAATTTTCTTTCAT+TGG | + | chr4.1:20099389-20099408 | MS.gene028481:intron | 25.0% |
| !! | TACATTAATTTTCGATGAGT+GGG | - | chr4.1:20098408-20098427 | None:intergenic | 25.0% |
| !! | TTACATTAATTTTCGATGAG+TGG | - | chr4.1:20098409-20098428 | None:intergenic | 25.0% |
| !! | TTTGTGTGTTGTTGTTAATT+GGG | + | chr4.1:20097760-20097779 | MS.gene028481:intron | 25.0% |
| !! | TTTTGATCTTATGTCAGAAT+TGG | + | chr4.1:20098658-20098677 | MS.gene028481:intron | 25.0% |
| !!! | AATGTTGTTAAATGGATTGT+TGG | + | chr4.1:20098627-20098646 | MS.gene028481:intron | 25.0% |
| !!! | ATGATGCAAGATATTTTGAT+TGG | + | chr4.1:20099847-20099866 | MS.gene028481:CDS | 25.0% |
| !!! | ATGTTGTTAAATGGATTGTT+GGG | + | chr4.1:20098628-20098647 | MS.gene028481:intron | 25.0% |
| !!! | CTTCAAAATTTTGAGAATTG+AGG | + | chr4.1:20098338-20098357 | MS.gene028481:intron | 25.0% |
| !!! | TCAGTAATGGGTTTAAAAAT+AGG | - | chr4.1:20098685-20098704 | None:intergenic | 25.0% |
| AAAAGTAAATCCTGGTTATG+AGG | + | chr4.1:20100202-20100221 | MS.gene028481:CDS | 30.0% | |
| AAACTGTTTGGTTGAGTTTA+TGG | - | chr4.1:20099707-20099726 | None:intergenic | 30.0% | |
| AAATCGGTGGTTGAAAATAT+TGG | + | chr4.1:20097793-20097812 | MS.gene028481:intron | 30.0% | |
| AAATTACCTTTGTAACAAGC+TGG | + | chr4.1:20098063-20098082 | MS.gene028481:intron | 30.0% | |
| AAGAAAATGATACACCAACT+TGG | + | chr4.1:20098921-20098940 | MS.gene028481:CDS | 30.0% | |
| AATAAACTGAAAACAGGCTA+TGG | + | chr4.1:20099626-20099645 | MS.gene028481:intron | 30.0% | |
| AATCGGTGGTTGAAAATATT+GGG | + | chr4.1:20097794-20097813 | MS.gene028481:intron | 30.0% | |
| AATTGGTGTGAATGATGATT+TGG | + | chr4.1:20097508-20097527 | MS.gene028481:CDS | 30.0% | |
| ACTAACCAAGACAATCAAAA+AGG | - | chr4.1:20097718-20097737 | None:intergenic | 30.0% | |
| AGAAAATAAGTCATCTAGGT+CGG | + | chr4.1:20098125-20098144 | MS.gene028481:intron | 30.0% | |
| ATATATTTCCTTAAGCCTTC+AGG | - | chr4.1:20099873-20099892 | None:intergenic | 30.0% | |
| ATTGGGAATCATGACAAAAT+CGG | + | chr4.1:20097777-20097796 | MS.gene028481:intron | 30.0% | |
| CAGTCAACAACATAAACTTA+GGG | - | chr4.1:20099788-20099807 | None:intergenic | 30.0% | |
| CTAACCAAGACAATCAAAAA+GGG | - | chr4.1:20097717-20097736 | None:intergenic | 30.0% | |
| CTAGCCATTATGTATGTAAA+AGG | + | chr4.1:20098751-20098770 | MS.gene028481:intron | 30.0% | |
| CTCTAACATAAGAGTTTCTA+AGG | - | chr4.1:20098511-20098530 | None:intergenic | 30.0% | |
| CTCTTAAGAAGAAGAATAAG+TGG | + | chr4.1:20097863-20097882 | MS.gene028481:intron | 30.0% | |
| GATATAATATCAAGAGGCTT+TGG | - | chr4.1:20097644-20097663 | None:intergenic | 30.0% | |
| GTACAACAAAAAGTAAATCC+TGG | + | chr4.1:20100194-20100213 | MS.gene028481:CDS | 30.0% | |
| TAAAGTGTATATGTTACCAC+GGG | - | chr4.1:20099257-20099276 | None:intergenic | 30.0% | |
| TAGTATGGTACATCAGTAAT+GGG | - | chr4.1:20098697-20098716 | None:intergenic | 30.0% | |
| TATATTGATACTGTGAGACA+AGG | + | chr4.1:20099888-20099907 | MS.gene028481:CDS | 30.0% | |
| TCTATTGAATTCCATGAGTT+TGG | + | chr4.1:20097679-20097698 | MS.gene028481:intron | 30.0% | |
| TTGTTACAAAGGTAATTTGG+TGG | - | chr4.1:20098061-20098080 | None:intergenic | 30.0% | |
| TTTCATTCTGCAATAATGCA+TGG | - | chr4.1:20098850-20098869 | None:intergenic | 30.0% | |
| ! | AAAGACTTCCTCTCTTTTTA+GGG | + | chr4.1:20100132-20100151 | MS.gene028481:CDS | 30.0% |
| ! | ACAGCCTTTTACATACATAA+TGG | - | chr4.1:20098758-20098777 | None:intergenic | 30.0% |
| ! | AGGATGACTCATTTTCTATT+AGG | - | chr4.1:20098280-20098299 | None:intergenic | 30.0% |
| ! | ATACCAACTGGTACAATTTT+CGG | + | chr4.1:20099013-20099032 | MS.gene028481:CDS | 30.0% |
| ! | GTTTGTGTGTTGTTGTTAAT+TGG | + | chr4.1:20097759-20097778 | MS.gene028481:intron | 30.0% |
| !! | AGCTTGTTACAAAGGTAATT+TGG | - | chr4.1:20098064-20098083 | None:intergenic | 30.0% |
| !! | TCAAAATTTTGAAGACCCTT+GGG | - | chr4.1:20098332-20098351 | None:intergenic | 30.0% |
| !! | TTTTCCCTTTTTGATTGTCT+TGG | + | chr4.1:20097710-20097729 | MS.gene028481:intron | 30.0% |
| !!! | AAGAATCCTACTTTTTCCAT+CGG | - | chr4.1:20100087-20100106 | None:intergenic | 30.0% |
| !!! | AGTCCATAAGTTGTTTTAAG+TGG | - | chr4.1:20099669-20099688 | None:intergenic | 30.0% |
| AAAGTGTATATGTTACCACG+GGG | - | chr4.1:20099256-20099275 | None:intergenic | 35.0% | |
| AATATTTCGAGAACCATCGA+GGG | - | chr4.1:20098984-20099003 | None:intergenic | 35.0% | |
| ACCACTATTTGGCATATCAA+TGG | - | chr4.1:20097606-20097625 | None:intergenic | 35.0% | |
| ACCATTGATATGCCAAATAG+TGG | + | chr4.1:20097602-20097621 | MS.gene028481:CDS | 35.0% | |
| ACTATACTCTGCATTACCTT+TGG | + | chr4.1:20099154-20099173 | MS.gene028481:CDS | 35.0% | |
| ATACCGAAAATTGTACCAGT+TGG | - | chr4.1:20099019-20099038 | None:intergenic | 35.0% | |
| ATGGAAGAGTTGGAAAGTTA+TGG | + | chr4.1:20100167-20100186 | MS.gene028481:CDS | 35.0% | |
| ATTCACTCCAAAGTGGAAAT+AGG | + | chr4.1:20099095-20099114 | MS.gene028481:CDS | 35.0% | |
| ATTCTGCAATAATGCATGGT+GGG | - | chr4.1:20098846-20098865 | None:intergenic | 35.0% | |
| CACACCGATATAATATCAAG+AGG | - | chr4.1:20097650-20097669 | None:intergenic | 35.0% | |
| CATAAACTTAGGGACTGTAT+AGG | - | chr4.1:20099778-20099797 | None:intergenic | 35.0% | |
| CTAAAAAGAGAGGAAGTCTT+TGG | - | chr4.1:20100133-20100152 | None:intergenic | 35.0% | |
| CTAGTATGGTACATCAGTAA+TGG | - | chr4.1:20098698-20098717 | None:intergenic | 35.0% | |
| CTCACAAATGTTCATGTCTA+CGG | + | chr4.1:20099732-20099751 | MS.gene028481:intron | 35.0% | |
| CTTATGTTAGAGTGTGTTGA+AGG | + | chr4.1:20098519-20098538 | MS.gene028481:intron | 35.0% | |
| CTTCATAAACAAGACGAAGA+TGG | - | chr4.1:20100019-20100038 | None:intergenic | 35.0% | |
| GCAGTCAACAACATAAACTT+AGG | - | chr4.1:20099789-20099808 | None:intergenic | 35.0% | |
| GTAAAACCACTATCAGTCTT+AGG | + | chr4.1:20097404-20097423 | MS.gene028481:CDS | 35.0% | |
| GTCAACATTCAAGACTAGTA+TGG | - | chr4.1:20098712-20098731 | None:intergenic | 35.0% | |
| GTTACATTGATGGAGTATGT+AGG | + | chr4.1:20097473-20097492 | MS.gene028481:CDS | 35.0% | |
| TGGGTAGGAACATATATACA+GGG | - | chr4.1:20097911-20097930 | None:intergenic | 35.0% | |
| TTGATGGAGTATGTAGGTAA+AGG | + | chr4.1:20097479-20097498 | MS.gene028481:CDS | 35.0% | |
| TTGTCATCACTCCAAAAATC+TGG | + | chr4.1:20098875-20098894 | MS.gene028481:CDS | 35.0% | |
| TTGTGAGTTGTGAAACTGTT+TGG | - | chr4.1:20099719-20099738 | None:intergenic | 35.0% | |
| ! | CAAAGACTTCCTCTCTTTTT+AGG | + | chr4.1:20100131-20100150 | MS.gene028481:CDS | 35.0% |
| ! | CAGCAACTTTTCCAGATTTT+TGG | - | chr4.1:20098889-20098908 | None:intergenic | 35.0% |
| ! | GAAAATTGTACCAGTTGGTA+TGG | - | chr4.1:20099014-20099033 | None:intergenic | 35.0% |
| ! | TCCATCGAACTTTGTTGTAT+GGG | + | chr4.1:20099970-20099989 | MS.gene028481:CDS | 35.0% |
| ! | TTTTTGTCAAGTAGCCACAA+TGG | + | chr4.1:20097831-20097850 | MS.gene028481:intron | 35.0% |
| !! | AAGAGAATTTCTAGCCATTG+TGG | - | chr4.1:20097848-20097867 | None:intergenic | 35.0% |
| !! | ACAAAACCAGCTTGTTACAA+AGG | - | chr4.1:20098072-20098091 | None:intergenic | 35.0% |
| !! | CAAAATTTTGAAGACCCTTG+GGG | - | chr4.1:20098331-20098350 | None:intergenic | 35.0% |
| !! | CGGTTTTGTAAGCATGAATT+AGG | + | chr4.1:20097999-20098018 | MS.gene028481:intron | 35.0% |
| !! | CTCAAAATTTTGAAGACCCT+TGG | - | chr4.1:20098333-20098352 | None:intergenic | 35.0% |
| !! | TGTTGGAAGCATCTTACATA+AGG | + | chr4.1:20099371-20099390 | MS.gene028481:intron | 35.0% |
| !!! | AGATATTTTGATTGGCCTGA+AGG | + | chr4.1:20099855-20099874 | MS.gene028481:CDS | 35.0% |
| AAACCCTCTTAGTTTCATCG+TGG | + | chr4.1:20100040-20100059 | MS.gene028481:CDS | 40.0% | |
| AACTTACCAATTAAGCCCCA+AGG | + | chr4.1:20098313-20098332 | MS.gene028481:intron | 40.0% | |
| AACTTAGGGACTGTATAGGA+TGG | - | chr4.1:20099774-20099793 | None:intergenic | 40.0% | |
| ACTGATGCACAGATAGAAAC+AGG | - | chr4.1:20098382-20098401 | None:intergenic | 40.0% | |
| ACTTACCAATTAAGCCCCAA+GGG | + | chr4.1:20098314-20098333 | MS.gene028481:intron | 40.0% | |
| ACTTTGTTGGATGACTCGAA+TGG | - | chr4.1:20098205-20098224 | None:intergenic | 40.0% | |
| AGAAGAATAAGTGGTGTGTC+AGG | + | chr4.1:20097872-20097891 | MS.gene028481:intron | 40.0% | |
| AGTGACGAGTATCACTTTGT+TGG | - | chr4.1:20098218-20098237 | None:intergenic | 40.0% | |
| ATACTCGTCACTCTACGAAT+TGG | + | chr4.1:20098226-20098245 | MS.gene028481:intron | 40.0% | |
| ATATTTCGAGAACCATCGAG+GGG | - | chr4.1:20098983-20099002 | None:intergenic | 40.0% | |
| ATCTGGAAAAGTTGCTGTCA+TGG | + | chr4.1:20098892-20098911 | MS.gene028481:CDS | 40.0% | |
| ATGGAGTATGTAGGTAAAGG+AGG | + | chr4.1:20097482-20097501 | MS.gene028481:CDS | 40.0% | |
| ATTGATGCATCCATACCAAC+TGG | + | chr4.1:20099001-20099020 | MS.gene028481:CDS | 40.0% | |
| CAACAGTAGCAAGTGATGAT+GGG | + | chr4.1:20097447-20097466 | MS.gene028481:CDS | 40.0% | |
| CAATATTTCGAGAACCATCG+AGG | - | chr4.1:20098985-20099004 | None:intergenic | 40.0% | |
| CATTCTGCAATAATGCATGG+TGG | - | chr4.1:20098847-20098866 | None:intergenic | 40.0% | |
| CCAACTTGGATAAGTGATGA+TGG | + | chr4.1:20098935-20098954 | MS.gene028481:CDS | 40.0% | |
| CCATCATCACTTATCCAAGT+TGG | - | chr4.1:20098938-20098957 | None:intergenic | 40.0% | |
| CGGTATTTATAAACGCCTTG+AGG | + | chr4.1:20099033-20099052 | MS.gene028481:CDS | 40.0% | |
| CTATCAGCCTATTTCCACTT+TGG | - | chr4.1:20099105-20099124 | None:intergenic | 40.0% | |
| GAAGAATAAGTGGTGTGTCA+GGG | + | chr4.1:20097873-20097892 | MS.gene028481:intron | 40.0% | |
| GAATGAAGTCTCCTGTTGAA+CGG | - | chr4.1:20099207-20099226 | None:intergenic | 40.0% | |
| GATACTGTGAGACAAGGAAA+AGG | + | chr4.1:20099894-20099913 | MS.gene028481:CDS | 40.0% | |
| GGGTAGGAACATATATACAG+GGG | - | chr4.1:20097910-20097929 | None:intergenic | 40.0% | |
| GTGGGTAGGAACATATATAC+AGG | - | chr4.1:20097912-20097931 | None:intergenic | 40.0% | |
| TCAACAGTAGCAAGTGATGA+TGG | + | chr4.1:20097446-20097465 | MS.gene028481:CDS | 40.0% | |
| TCCAAACTCCCTAAAAAGAG+AGG | - | chr4.1:20100143-20100162 | None:intergenic | 40.0% | |
| TCCCTATCAGAACCACTATT+TGG | - | chr4.1:20097617-20097636 | None:intergenic | 40.0% | |
| TGGCCTAATTCAACTCTACA+AGG | - | chr4.1:20098151-20098170 | None:intergenic | 40.0% | |
| TTCTGCAATAATGCATGGTG+GGG | - | chr4.1:20098845-20098864 | None:intergenic | 40.0% | |
| TTGCTGAATTCACTCCAAAG+TGG | + | chr4.1:20099088-20099107 | MS.gene028481:CDS | 40.0% | |
| TTTAGGGAGTTTGGAAGACA+TGG | + | chr4.1:20100148-20100167 | MS.gene028481:CDS | 40.0% | |
| TTTGGAAGACATGGAAGAGT+TGG | + | chr4.1:20100157-20100176 | MS.gene028481:CDS | 40.0% | |
| ! | AGTCTTTGGTGCAGTTTAAC+TGG | - | chr4.1:20100119-20100138 | None:intergenic | 40.0% |
| ! | CATCGAACTTTGTTGTATGG+GGG | + | chr4.1:20099972-20099991 | MS.gene028481:CDS | 40.0% |
| ! | CCATCGAACTTTGTTGTATG+GGG | + | chr4.1:20099971-20099990 | MS.gene028481:CDS | 40.0% |
| ! | CTCCATCGAACTTTGTTGTA+TGG | + | chr4.1:20099969-20099988 | MS.gene028481:CDS | 40.0% |
| ! | GAAGTACCTAAGACTGATAG+TGG | - | chr4.1:20097413-20097432 | None:intergenic | 40.0% |
| ! | TACCTTGCAGAGTACTTCTT+AGG | - | chr4.1:20099927-20099946 | None:intergenic | 40.0% |
| ! | TGATGGGTCTGTTACATTGA+TGG | + | chr4.1:20097463-20097482 | MS.gene028481:CDS | 40.0% |
| ! | TGCTACTGTTGATGAAGATG+AGG | - | chr4.1:20097438-20097457 | None:intergenic | 40.0% |
| !! | AAGTGATGATGGTCCATATG+TGG | + | chr4.1:20098946-20098965 | MS.gene028481:CDS | 40.0% |
| !! | ATCCTAAGAAGTACTCTGCA+AGG | + | chr4.1:20099922-20099941 | MS.gene028481:CDS | 40.0% |
| !! | GCCAAATAGTGGTTCTGATA+GGG | + | chr4.1:20097613-20097632 | MS.gene028481:CDS | 40.0% |
| !! | TCCTCTCTTTTTAGGGAGTT+TGG | + | chr4.1:20100139-20100158 | MS.gene028481:CDS | 40.0% |
| !! | TGCCAAATAGTGGTTCTGAT+AGG | + | chr4.1:20097612-20097631 | MS.gene028481:CDS | 40.0% |
| !!! | ACAAGCTGGTTTTGTAGAGA+TGG | + | chr4.1:20098077-20098096 | MS.gene028481:intron | 40.0% |
| !!! | CAAGCTGGTTTTGTAGAGAT+GGG | + | chr4.1:20098078-20098097 | MS.gene028481:intron | 40.0% |
| !!! | CTCTCTTGTTTTGTCACTCA+GGG | + | chr4.1:20099808-20099827 | MS.gene028481:intron | 40.0% |
| AGCATTAAAATTCCTCCCCG+TGG | + | chr4.1:20099238-20099257 | MS.gene028481:CDS | 45.0% | |
| CCCCATACAACAAAGTTCGA+TGG | - | chr4.1:20099974-20099993 | None:intergenic | 45.0% | |
| CGTCACTCTACGAATTGGTT+TGG | + | chr4.1:20098231-20098250 | MS.gene028481:intron | 45.0% | |
| GAGGATCCGATGGAAAAAGT+AGG | + | chr4.1:20100078-20100097 | MS.gene028481:CDS | 45.0% | |
| GAGTATGTAGGTAAAGGAGG+TGG | + | chr4.1:20097485-20097504 | MS.gene028481:CDS | 45.0% | |
| GCTCCACGATGAAACTAAGA+GGG | - | chr4.1:20100046-20100065 | None:intergenic | 45.0% | |
| GGAAATAGGCTGATAGCTTC+TGG | + | chr4.1:20099109-20099128 | MS.gene028481:CDS | 45.0% | |
| GGGAATCATGACAAAATCGG+TGG | + | chr4.1:20097780-20097799 | MS.gene028481:intron | 45.0% | |
| GTAGGTAAAGGAGGTGGAAT+TGG | + | chr4.1:20097491-20097510 | MS.gene028481:CDS | 45.0% | |
| TGCTCCACGATGAAACTAAG+AGG | - | chr4.1:20100047-20100066 | None:intergenic | 45.0% | |
| ! | AACTTTGTTGTATGGGGGTG+TGG | + | chr4.1:20099977-20099996 | MS.gene028481:CDS | 45.0% |
| ! | CGGCCTTGTAGAGTTGAATT+AGG | + | chr4.1:20098145-20098164 | MS.gene028481:intron | 45.0% |
| ! | GCAGATTATCTAGCTCCTCA+AGG | - | chr4.1:20099051-20099070 | None:intergenic | 45.0% |
| !! | CGGGGAGGAATTTTAATGCT+TGG | - | chr4.1:20099238-20099257 | None:intergenic | 45.0% |
| !! | TCTGCATTACCTTTGGCTCT+GGG | + | chr4.1:20099161-20099180 | MS.gene028481:CDS | 45.0% |
| !! | TTGATTGGCCTGAAGGCTTA+AGG | + | chr4.1:20099862-20099881 | MS.gene028481:CDS | 45.0% |
| !!! | GCTCTCTTGTTTTGTCACTC+AGG | + | chr4.1:20099807-20099826 | MS.gene028481:intron | 45.0% |
| ACAAGACGAAGATGGTCCCT+CGG | - | chr4.1:20100011-20100030 | None:intergenic | 50.0% | |
| AGCAAAGCCTTCTCCTCTGT+GGG | - | chr4.1:20099073-20099092 | None:intergenic | 50.0% | |
| AGTTTCATCGTGGAGCAAGC+TGG | + | chr4.1:20100050-20100069 | MS.gene028481:CDS | 50.0% | |
| GAAGACCCTTGGGGCTTAAT+TGG | - | chr4.1:20098322-20098341 | None:intergenic | 50.0% | |
| GCTAGATAATCTGCCCACAG+AGG | + | chr4.1:20099057-20099076 | MS.gene028481:CDS | 50.0% | |
| GGATCTGTCACGACCACATA+TGG | - | chr4.1:20098962-20098981 | None:intergenic | 50.0% | |
| GTGTATATGTTACCACGGGG+AGG | - | chr4.1:20099253-20099272 | None:intergenic | 50.0% | |
| TAATCTGCCCACAGAGGAGA+AGG | + | chr4.1:20099063-20099082 | MS.gene028481:CDS | 50.0% | |
| TACCCACTGAGCTAAGCTCA+CGG | + | chr4.1:20097925-20097944 | MS.gene028481:intron | 50.0% | |
| TTCACTCTCGACCGTTCAAC+AGG | + | chr4.1:20099193-20099212 | MS.gene028481:CDS | 50.0% | |
| ! | CTCTGCATTACCTTTGGCTC+TGG | + | chr4.1:20099160-20099179 | MS.gene028481:CDS | 50.0% |
| ACCCACTGAGCTAAGCTCAC+GGG | + | chr4.1:20097926-20097945 | MS.gene028481:intron | 55.0% | |
| CAGCAAAGCCTTCTCCTCTG+TGG | - | chr4.1:20099074-20099093 | None:intergenic | 55.0% | |
| GGTGTGTCAGGGTTCGAACT+CGG | + | chr4.1:20097884-20097903 | MS.gene028481:intron | 55.0% | |
| GTGAGCTTAGCTCAGTGGGT+AGG | - | chr4.1:20097926-20097945 | None:intergenic | 55.0% | |
| TCATCGTGGAGCAAGCTGGT+GGG | + | chr4.1:20100054-20100073 | MS.gene028481:CDS | 55.0% | |
| TGCATGTGTCCCAGAGCCAA+AGG | - | chr4.1:20099173-20099192 | None:intergenic | 55.0% | |
| TTCATCGTGGAGCAAGCTGG+TGG | + | chr4.1:20100053-20100072 | MS.gene028481:CDS | 55.0% | |
| ! | GGGTGTGGTGATGAATCCGA+GGG | + | chr4.1:20099992-20100011 | MS.gene028481:CDS | 55.0% |
| CCCACTGAGCTAAGCTCACG+GGG | + | chr4.1:20097927-20097946 | MS.gene028481:intron | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+GGG | - | chr4.1:20097930-20097949 | None:intergenic | 60.0% | |
| GTCGTGACAGATCCCCTCGA+TGG | + | chr4.1:20098968-20098987 | MS.gene028481:CDS | 60.0% | |
| TCCCCGTGAGCTTAGCTCAG+TGG | - | chr4.1:20097931-20097950 | None:intergenic | 60.0% | |
| ! | GGGGTGTGGTGATGAATCCG+AGG | + | chr4.1:20099991-20100010 | MS.gene028481:CDS | 60.0% |
| GCTGGTGGGAGAGGATCCGA+TGG | + | chr4.1:20100068-20100087 | MS.gene028481:CDS | 65.0% | |
| GTGGAGCAAGCTGGTGGGAG+AGG | + | chr4.1:20100059-20100078 | MS.gene028481:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 20097386 | 20100229 | 20097386 | ID=MS.gene028481 |
| chr4.1 | mRNA | 20097386 | 20100229 | 20097386 | ID=MS.gene028481.t1;Parent=MS.gene028481 |
| chr4.1 | exon | 20097386 | 20097664 | 20097386 | ID=MS.gene028481.t1.exon1;Parent=MS.gene028481.t1 |
| chr4.1 | CDS | 20097386 | 20097664 | 20097386 | ID=cds.MS.gene028481.t1;Parent=MS.gene028481.t1 |
| chr4.1 | exon | 20098863 | 20099259 | 20098863 | ID=MS.gene028481.t1.exon2;Parent=MS.gene028481.t1 |
| chr4.1 | CDS | 20098863 | 20099259 | 20098863 | ID=cds.MS.gene028481.t1;Parent=MS.gene028481.t1 |
| chr4.1 | exon | 20099829 | 20100229 | 20099829 | ID=MS.gene028481.t1.exon3;Parent=MS.gene028481.t1 |
| chr4.1 | CDS | 20099829 | 20100229 | 20099829 | ID=cds.MS.gene028481.t1;Parent=MS.gene028481.t1 |
| Gene Sequence |
| Protein sequence |
