AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053579


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053579.t1 MTR_4g093620 94.472 398 17 2 1 393 1 398 0.0 753
MS.gene053579.t1 MTR_7g066120 41.646 413 204 12 1 380 1 409 1.57e-92 284
MS.gene053579.t1 MTR_2g008030 42.122 311 155 7 82 378 32 331 4.32e-75 237
MS.gene053579.t1 MTR_6g035305 40.836 311 161 6 82 379 32 332 2.24e-73 232
MS.gene053579.t1 MTR_0776s0010 37.419 310 175 6 80 375 307 611 5.77e-56 199
MS.gene053579.t1 MTR_3g070100 26.148 283 170 12 119 386 120 378 1.46e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053579.t1 AT5G64380 76.667 360 73 3 40 393 50 404 0.0 562
MS.gene053579.t1 AT3G54050 46.729 321 151 6 79 380 96 415 9.81e-92 282
MS.gene053579.t1 AT3G54050 46.729 321 151 6 79 380 96 415 9.81e-92 282
MS.gene053579.t1 AT1G43670 41.875 320 163 7 82 388 32 341 6.67e-79 246
MS.gene053579.t1 AT3G55800 27.273 286 169 14 119 389 127 388 1.88e-14 74.7

Find 91 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCATTACCTTTGGCTC+TGG 0.272844 4.4:+21380364 MS.gene053579:CDS
TCCCTATCAGAACCACTATT+TGG 0.303466 4.4:-21378819 None:intergenic
AGTCTTTGGTGCAGTTTAAC+TGG 0.327999 4.4:-21381340 None:intergenic
ATTCACTCCAAAGTGGAAAT+AGG 0.331263 4.4:+21380299 MS.gene053579:CDS
CTCCATCGAACTTTGTTGTA+TGG 0.346740 4.4:+21381193 MS.gene053579:CDS
TACCTTGCAGAGTACTTCTT+AGG 0.348324 4.4:-21381148 None:intergenic
ATATATTTCCTTAAGCCTTC+AGG 0.350818 4.4:-21381094 None:intergenic
GTAGGTAAAGGAGGTGGAAT+TGG 0.362077 4.4:+21378696 MS.gene053579:CDS
GGTTGGAAAGTTTGAAGCTT+TGG 0.362731 4.4:-21378537 None:intergenic
TTGATTGGCCTGAAGGCTTA+AGG 0.371460 4.4:+21381086 MS.gene053579:CDS
CTTGTTACTGAAGCCATTGT+TGG 0.385235 4.4:-21378585 None:intergenic
AATTGGTGTGAATGATGATT+TGG 0.387215 4.4:+21378713 MS.gene053579:CDS
TTCACTCTCGACCGTTCAAC+AGG 0.404800 4.4:+21380397 MS.gene053579:CDS
ATGGAAGAGTTGGAAAGTTA+TGG 0.406247 4.4:+21381391 MS.gene053579:CDS
CTATCAGCCTATTTCCACTT+TGG 0.418294 4.4:-21380306 None:intergenic
AAAAGTAAATCCTGGTTATG+AGG 0.419122 4.4:+21381426 MS.gene053579:CDS
GGATCTGTCACGACCACATA+TGG 0.420264 4.4:-21380163 None:intergenic
GAAGGTGATGAGTTGATAGA+AGG 0.422120 4.4:-21378511 None:intergenic
GATATAATATCAAGAGGCTT+TGG 0.431354 4.4:-21378846 None:intergenic
GGAAATAGGCTGATAGCTTC+TGG 0.433737 4.4:+21380313 MS.gene053579:CDS
TCCATCGAACTTTGTTGTAT+GGG 0.439545 4.4:+21381194 MS.gene053579:CDS
TGCCAAATAGTGGTTCTGAT+AGG 0.439936 4.4:+21378817 MS.gene053579:CDS
AAAGCCTCTTGATATTATAT+CGG 0.440217 4.4:+21378848 MS.gene053579:CDS
ACTATACTCTGCATTACCTT+TGG 0.441406 4.4:+21380358 MS.gene053579:CDS
TTTGGAAGACATGGAAGAGT+TGG 0.453917 4.4:+21381381 MS.gene053579:CDS
CCATTGTTGGAGTGAAGAAA+AGG 0.457793 4.4:-21378572 None:intergenic
ATCTGGAAAAGTTGCTGTCA+TGG 0.460073 4.4:+21380096 MS.gene053579:CDS
TCAACAGTAGCAAGTGATGA+TGG 0.462555 4.4:+21378651 MS.gene053579:CDS
AGTAAAACCACTATCAGTCT+TGG 0.470227 4.4:+21378608 MS.gene053579:CDS
CCATCGAACTTTGTTGTATG+GGG 0.479077 4.4:+21381195 MS.gene053579:CDS
ATTGATGCATCCATACCAAC+TGG 0.487257 4.4:+21380205 MS.gene053579:CDS
ACCGTTGATATGCCAAATAG+TGG 0.487632 4.4:+21378807 MS.gene053579:CDS
CTTCATAAACAAGACGAAGA+TGG 0.490062 4.4:-21381240 None:intergenic
TCTGCATTACCTTTGGCTCT+GGG 0.492545 4.4:+21380365 MS.gene053579:CDS
GAAAATTGTACCAGTTGGTA+TGG 0.498000 4.4:-21380215 None:intergenic
GTAAAACCACTATCAGTCTT+GGG 0.502634 4.4:+21378609 MS.gene053579:CDS
GCCAAATAGTGGTTCTGATA+GGG 0.510565 4.4:+21378818 MS.gene053579:CDS
GTGGAGCAAGCTGGTGGGAG+AGG 0.519722 4.4:+21381283 MS.gene053579:CDS
AGTTTGAAGCTTTGGTCGGA+AGG 0.522108 4.4:-21378529 None:intergenic
GAAGTACCCAAGACTGATAG+TGG 0.522996 4.4:-21378615 None:intergenic
TGATGGGTCTGTTACATTGA+TGG 0.523388 4.4:+21378668 MS.gene053579:CDS
TAATCTGCCCACAGAGGAGA+AGG 0.532639 4.4:+21380267 MS.gene053579:CDS
TGCTCCACGATGAAACTAAG+AGG 0.534585 4.4:-21381268 None:intergenic
TTGATGGAGTATGTAGGTAA+AGG 0.537527 4.4:+21378684 MS.gene053579:CDS
ATGGAGTATGTAGGTAAAGG+AGG 0.539783 4.4:+21378687 MS.gene053579:CDS
AGCAAAGCCTTCTCCTCTGT+GGG 0.541176 4.4:-21380274 None:intergenic
GAGTATGTAGGTAAAGGAGG+TGG 0.541348 4.4:+21378690 MS.gene053579:CDS
CCAACTTGGATAAGTGATGA+TGG 0.545731 4.4:+21380139 MS.gene053579:CDS
CATTGTTGGAGTGAAGAAAA+GGG 0.551735 4.4:-21378571 None:intergenic
GTTGGAGTGAAGAAAAGGGT+TGG 0.561218 4.4:-21378567 None:intergenic
CGGTATTTATAAACGCCTTG+AGG 0.565322 4.4:+21380237 MS.gene053579:CDS
AGTTTCATCGTGGAGCAAGC+TGG 0.566038 4.4:+21381274 MS.gene053579:CDS
CCATCATCACTTATCCAAGT+TGG 0.566146 4.4:-21380139 None:intergenic
TTTAGGGAGTTTGGAAGACA+TGG 0.568162 4.4:+21381372 MS.gene053579:CDS
AAGAAAATGATACACCAACT+TGG 0.571987 4.4:+21380125 MS.gene053579:CDS
GGGGTGTGGCGATGAATCCG+AGG 0.573022 4.4:+21381215 MS.gene053579:CDS
CAACAGTAGCAAGTGATGAT+GGG 0.579069 4.4:+21378652 MS.gene053579:CDS
GATACTGTGAGACAAGGAAA+AGG 0.580838 4.4:+21381118 MS.gene053579:CDS
TTGCTGAATTCACTCCAAAG+TGG 0.581831 4.4:+21380292 MS.gene053579:CDS
GTTACATTGATGGAGTATGT+AGG 0.584657 4.4:+21378678 MS.gene053579:CDS
CAGCAAAGCCTTCTCCTCTG+TGG 0.586371 4.4:-21380275 None:intergenic
TGCATGTGTCCCAGAGCCAA+AGG 0.587943 4.4:-21380374 None:intergenic
CCCCATACAACAAAGTTCGA+TGG 0.588449 4.4:-21381195 None:intergenic
TTCATCGTGGAGCAAGCTGG+TGG 0.592470 4.4:+21381277 MS.gene053579:CDS
GGAAAGTTTGAAGCTTTGGT+CGG 0.593641 4.4:-21378533 None:intergenic
AAGGTGATGAGTTGATAGAA+GGG 0.593820 4.4:-21378510 None:intergenic
ATATCAACGGTATAATTGAA+AGG 0.594146 4.4:-21378795 None:intergenic
ATCCTAAGAAGTACTCTGCA+AGG 0.594963 4.4:+21381146 MS.gene053579:CDS
GTCGTGACAGATCCCCTCGA+TGG 0.599505 4.4:+21380172 MS.gene053579:CDS
ATACCGAAAATTGTACCAGT+TGG 0.603945 4.4:-21380220 None:intergenic
CATCGAACTTTGTTGTATGG+GGG 0.606647 4.4:+21381196 MS.gene053579:CDS
TGCTACTGTTGATGAAGATG+AGG 0.607320 4.4:-21378640 None:intergenic
CACACCGATATAATATCAAG+AGG 0.613129 4.4:-21378852 None:intergenic
GGGTGTGGCGATGAATCCGA+GGG 0.615240 4.4:+21381216 MS.gene053579:CDS
TAGCATCAAACCTCATAACC+AGG 0.619050 4.4:-21381436 None:intergenic
GCAGATTATCTAGCTCCTCA+AGG 0.619596 4.4:-21380252 None:intergenic
AATATTTCGAGAACCATCGA+GGG 0.619869 4.4:-21380185 None:intergenic
ACCACTATTTGGCATATCAA+CGG 0.620007 4.4:-21378808 None:intergenic
ACAAGACGAAGATGGTCCCT+CGG 0.621507 4.4:-21381232 None:intergenic
GCTCCACGATGAAACTAAGA+GGG 0.623232 4.4:-21381267 None:intergenic
GAATGAAGTCTCCTGTTGAA+CGG 0.631390 4.4:-21380408 None:intergenic
GCTGGTGGGAGAGGATCCGA+TGG 0.631525 4.4:+21381292 MS.gene053579:CDS
AAGTGATGATGGTCCATATG+TGG 0.632479 4.4:+21380150 MS.gene053579:CDS
TCATCGTGGAGCAAGCTGGT+GGG 0.634727 4.4:+21381278 MS.gene053579:CDS
CAATATTTCGAGAACCATCG+AGG 0.656931 4.4:-21380186 None:intergenic
AGCATTAAAATTCCTCCCCG+TGG 0.680772 4.4:+21380442 MS.gene053579:CDS
TATATTGATACTGTGAGACA+AGG 0.681648 4.4:+21381112 MS.gene053579:CDS
GCTAGATAATCTGCCCACAG+AGG 0.689544 4.4:+21380261 MS.gene053579:CDS
GTGCATATGTTACCACGGGG+AGG 0.701876 4.4:-21380454 None:intergenic
ATATTTCGAGAACCATCGAG+GGG 0.721395 4.4:-21380184 None:intergenic
AAACCCTCTTAGTTTCATCG+TGG 0.730924 4.4:+21381264 MS.gene053579:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATATCTATCAAATT+AGG - chr4.4:21380528-21380547 None:intergenic 10.0%
!!! CTATACAATATTTTTATATT+TGG - chr4.4:21379375-21379394 None:intergenic 10.0%
!! ACATTAATGCTTATAATTTA+AGG + chr4.4:21380646-21380665 MS.gene053579:intron 15.0%
!! TATAAAAATAAACTGAAAAC+AGG + chr4.4:21380844-21380863 MS.gene053579:intron 15.0%
!!! ATAAAAAACACTTTAAAAGT+CGG + chr4.4:21379183-21379202 MS.gene053579:intron 15.0%
!! AACTCAATATAGCATAAATT+AGG + chr4.4:21379159-21379178 MS.gene053579:intron 20.0%
!! GTTCTATTAATGTTGTTAAA+TGG + chr4.4:21379823-21379842 MS.gene053579:intron 20.0%
!! TAACAAAACCCTTTATTAAA+AGG + chr4.4:21379996-21380015 MS.gene053579:intron 20.0%
!! TATTAGAAAATAAGTCATCT+AGG + chr4.4:21379325-21379344 MS.gene053579:intron 20.0%
!! TCTGTTATATTATCAAATGT+TGG + chr4.4:21380558-21380577 MS.gene053579:intron 20.0%
!! TTAAGCTATTTATCAAGAAA+GGG - chr4.4:21380672-21380691 None:intergenic 20.0%
!! TTCTATTAGGTTTAAATATC+AGG - chr4.4:21379471-21379490 None:intergenic 20.0%
!!! CTCTTTTTCCTTTTAATAAA+GGG - chr4.4:21380007-21380026 None:intergenic 20.0%
!!! TCTCTTTTTCCTTTTAATAA+AGG - chr4.4:21380008-21380027 None:intergenic 20.0%
!!! TTCAAAATTTTGAGAATTGA+GGG + chr4.4:21379543-21379562 MS.gene053579:intron 20.0%
!!! TTGATAATATAACAGAAGAT+AGG - chr4.4:21380554-21380573 None:intergenic 20.0%
!!! TTTATTTTTATAAGCTCTTC+AGG - chr4.4:21380836-21380855 None:intergenic 20.0%
! AAAAAAATCATCCAAACTCA+TGG - chr4.4:21378898-21378917 None:intergenic 25.0%
! AAAGCCTCTTGATATTATAT+CGG + chr4.4:21378848-21378867 MS.gene053579:CDS 25.0%
! AATAGAACAGTTTGTCATAA+TGG - chr4.4:21379811-21379830 None:intergenic 25.0%
! ATATCAACGGTATAATTGAA+AGG - chr4.4:21378798-21378817 None:intergenic 25.0%
! ATTCTCTTAAGAAGAATAAG+TGG + chr4.4:21379067-21379086 MS.gene053579:intron 25.0%
! GTAAGTTATATGAAAACACA+AGG - chr4.4:21379504-21379523 None:intergenic 25.0%
! GTTAAGCTATTTATCAAGAA+AGG - chr4.4:21380673-21380692 None:intergenic 25.0%
! GTTCTACAACTTAGATATAA+GGG - chr4.4:21379641-21379660 None:intergenic 25.0%
! TGTTCTACAACTTAGATATA+AGG - chr4.4:21379642-21379661 None:intergenic 25.0%
! TTCTACAACTTAGATATAAG+GGG - chr4.4:21379640-21379659 None:intergenic 25.0%
!! GTTTGTCATAATGGAAATAT+AGG - chr4.4:21379802-21379821 None:intergenic 25.0%
!! TAAGGCTAATTTTCTTTCAT+TGG + chr4.4:21380593-21380612 MS.gene053579:intron 25.0%
!! TTACATTAATTTTCGATGAG+TGG - chr4.4:21379613-21379632 None:intergenic 25.0%
!! TTTGTGTGTTGTTGTTAATT+GGG + chr4.4:21378967-21378986 MS.gene053579:intron 25.0%
!! TTTTGATCTTATGTCAGAAT+TGG + chr4.4:21379862-21379881 MS.gene053579:intron 25.0%
!!! AATGTTGTTAAATGGATTGT+TGG + chr4.4:21379831-21379850 MS.gene053579:intron 25.0%
!!! ATGATGCAAGATATTTTGAT+TGG + chr4.4:21381071-21381090 MS.gene053579:CDS 25.0%
!!! ATGTTGTTAAATGGATTGTT+GGG + chr4.4:21379832-21379851 MS.gene053579:intron 25.0%
!!! CTTCAAAATTTTGAGAATTG+AGG + chr4.4:21379542-21379561 MS.gene053579:intron 25.0%
!!! TCAGTAATGGGTTTAAAAAT+AGG - chr4.4:21379889-21379908 None:intergenic 25.0%
AAAAGTAAATCCTGGTTATG+AGG + chr4.4:21381426-21381445 MS.gene053579:CDS 30.0%
AAACTGTTTGGTTGAGTTTA+TGG - chr4.4:21380931-21380950 None:intergenic 30.0%
AAATCGGTGGTTGAAAATAT+TGG + chr4.4:21379000-21379019 MS.gene053579:intron 30.0%
AAATTACCTTTGTAACAAGC+TGG + chr4.4:21379267-21379286 MS.gene053579:intron 30.0%
AAGAAAATGATACACCAACT+TGG + chr4.4:21380125-21380144 MS.gene053579:CDS 30.0%
AATAAACTGAAAACAGGCTA+TGG + chr4.4:21380850-21380869 MS.gene053579:intron 30.0%
AATCGGTGGTTGAAAATATT+GGG + chr4.4:21379001-21379020 MS.gene053579:intron 30.0%
AATTGGTGTGAATGATGATT+TGG + chr4.4:21378713-21378732 MS.gene053579:CDS 30.0%
ACTAACCAAGACAATCAAAA+AGG - chr4.4:21378925-21378944 None:intergenic 30.0%
AGAAAATAAGTCATCTAGGT+CGG + chr4.4:21379329-21379348 MS.gene053579:intron 30.0%
ATATATTTCCTTAAGCCTTC+AGG - chr4.4:21381097-21381116 None:intergenic 30.0%
ATTGGGAATCATGACAAAAT+CGG + chr4.4:21378984-21379003 MS.gene053579:intron 30.0%
CAGTCAACAACATAAACTTA+GGG - chr4.4:21381012-21381031 None:intergenic 30.0%
CTAACCAAGACAATCAAAAA+GGG - chr4.4:21378924-21378943 None:intergenic 30.0%
CTAGCCATTATGTATGTAAA+AGG + chr4.4:21379955-21379974 MS.gene053579:intron 30.0%
CTCTAACATAAGAGTTTCTA+AGG - chr4.4:21379715-21379734 None:intergenic 30.0%
GATATAATATCAAGAGGCTT+TGG - chr4.4:21378849-21378868 None:intergenic 30.0%
GTACAACAAAAAGTAAATCC+TGG + chr4.4:21381418-21381437 MS.gene053579:CDS 30.0%
TAGTATGGTACATCAGTAAT+GGG - chr4.4:21379901-21379920 None:intergenic 30.0%
TATATTGATACTGTGAGACA+AGG + chr4.4:21381112-21381131 MS.gene053579:CDS 30.0%
TCTATTGAATTCCATGAGTT+TGG + chr4.4:21378884-21378903 MS.gene053579:intron 30.0%
TTAAAGTGCATATGTTACCA+CGG - chr4.4:21380462-21380481 None:intergenic 30.0%
TTGTCATCACTTCAAAAATC+TGG + chr4.4:21380079-21380098 MS.gene053579:CDS 30.0%
TTGTTACAAAGGTAATTTGG+TGG - chr4.4:21379265-21379284 None:intergenic 30.0%
TTTCATTCTGCAATAATGCA+TGG - chr4.4:21380054-21380073 None:intergenic 30.0%
TTTCCACTGAAAACAACTTA+TGG + chr4.4:21380887-21380906 MS.gene053579:intron 30.0%
! AAAGACTTCCTCTCTTTTTA+GGG + chr4.4:21381356-21381375 MS.gene053579:CDS 30.0%
! AAGAAAAGGGTTGGAATTTT+TGG - chr4.4:21378561-21378580 None:intergenic 30.0%
! ACAGCCTTTTACATACATAA+TGG - chr4.4:21379962-21379981 None:intergenic 30.0%
! AGGATGACTCATTTTCTATT+AGG - chr4.4:21379484-21379503 None:intergenic 30.0%
! ATACCAACTGGTACAATTTT+CGG + chr4.4:21380217-21380236 MS.gene053579:CDS 30.0%
! GTTTGTGTGTTGTTGTTAAT+TGG + chr4.4:21378966-21378985 MS.gene053579:intron 30.0%
!! AGCTTGTTACAAAGGTAATT+TGG - chr4.4:21379268-21379287 None:intergenic 30.0%
!! TCAAAATTTTGAAGACCCTT+GGG - chr4.4:21379536-21379555 None:intergenic 30.0%
!! TTTTCCCTTTTTGATTGTCT+TGG + chr4.4:21378917-21378936 MS.gene053579:intron 30.0%
!!! AAGAATCCTACTTTTTCCAT+CGG - chr4.4:21381311-21381330 None:intergenic 30.0%
AATATTTCGAGAACCATCGA+GGG - chr4.4:21380188-21380207 None:intergenic 35.0%
ACCACTATTTGGCATATCAA+CGG - chr4.4:21378811-21378830 None:intergenic 35.0%
ACTATACTCTGCATTACCTT+TGG + chr4.4:21380358-21380377 MS.gene053579:CDS 35.0%
AGTAAAACCACTATCAGTCT+TGG + chr4.4:21378608-21378627 MS.gene053579:CDS 35.0%
ATACCGAAAATTGTACCAGT+TGG - chr4.4:21380223-21380242 None:intergenic 35.0%
ATGGAAGAGTTGGAAAGTTA+TGG + chr4.4:21381391-21381410 MS.gene053579:CDS 35.0%
ATTCACTCCAAAGTGGAAAT+AGG + chr4.4:21380299-21380318 MS.gene053579:CDS 35.0%
ATTCTGCAATAATGCATGGT+GGG - chr4.4:21380050-21380069 None:intergenic 35.0%
CACACCGATATAATATCAAG+AGG - chr4.4:21378855-21378874 None:intergenic 35.0%
CATAAACTTAGGGACTGTAT+AGG - chr4.4:21381002-21381021 None:intergenic 35.0%
CATTGTTGGAGTGAAGAAAA+GGG - chr4.4:21378574-21378593 None:intergenic 35.0%
CTAAAAAGAGAGGAAGTCTT+TGG - chr4.4:21381357-21381376 None:intergenic 35.0%
CTAGTATGGTACATCAGTAA+TGG - chr4.4:21379902-21379921 None:intergenic 35.0%
CTCACAAATGTTCATGTCTA+CGG + chr4.4:21380956-21380975 MS.gene053579:intron 35.0%
CTTATGTTAGAGTGTGTTGA+AGG + chr4.4:21379723-21379742 MS.gene053579:intron 35.0%
CTTCATAAACAAGACGAAGA+TGG - chr4.4:21381243-21381262 None:intergenic 35.0%
GCAGTCAACAACATAAACTT+AGG - chr4.4:21381013-21381032 None:intergenic 35.0%
GTAAAACCACTATCAGTCTT+GGG + chr4.4:21378609-21378628 MS.gene053579:CDS 35.0%
GTCAACATTCAAGACTAGTA+TGG - chr4.4:21379916-21379935 None:intergenic 35.0%
GTTACATTGATGGAGTATGT+AGG + chr4.4:21378678-21378697 MS.gene053579:CDS 35.0%
TAAAGTGCATATGTTACCAC+GGG - chr4.4:21380461-21380480 None:intergenic 35.0%
TGGCCTAATTCAACTATACA+AGG - chr4.4:21379355-21379374 None:intergenic 35.0%
TGGGTAGGAACATATATACA+GGG - chr4.4:21379115-21379134 None:intergenic 35.0%
TTGATGGAGTATGTAGGTAA+AGG + chr4.4:21378684-21378703 MS.gene053579:CDS 35.0%
TTGTGAGTTGTGAAACTGTT+TGG - chr4.4:21380943-21380962 None:intergenic 35.0%
! CAAAGACTTCCTCTCTTTTT+AGG + chr4.4:21381355-21381374 MS.gene053579:CDS 35.0%
! GAAAATTGTACCAGTTGGTA+TGG - chr4.4:21380218-21380237 None:intergenic 35.0%
! TCCATCGAACTTTGTTGTAT+GGG + chr4.4:21381194-21381213 MS.gene053579:CDS 35.0%
! TTTTTGTCAAGTAGCCACAA+TGG + chr4.4:21379038-21379057 MS.gene053579:intron 35.0%
!! AAGAGAATTTCTAGCCATTG+TGG - chr4.4:21379055-21379074 None:intergenic 35.0%
!! AAGGTGATGAGTTGATAGAA+GGG - chr4.4:21378513-21378532 None:intergenic 35.0%
!! ACAAAACCAGCTTGTTACAA+AGG - chr4.4:21379276-21379295 None:intergenic 35.0%
!! AGTCCATAAGTTGTTTTCAG+TGG - chr4.4:21380893-21380912 None:intergenic 35.0%
!! CAAAATTTTGAAGACCCTTG+GGG - chr4.4:21379535-21379554 None:intergenic 35.0%
!! CTCAAAATTTTGAAGACCCT+TGG - chr4.4:21379537-21379556 None:intergenic 35.0%
!! TGTTGGAAGCATCTTACATA+AGG + chr4.4:21380575-21380594 MS.gene053579:intron 35.0%
!!! AAAGGGTTGGAATTTTTGGT+TGG - chr4.4:21378557-21378576 None:intergenic 35.0%
!!! AGATATTTTGATTGGCCTGA+AGG + chr4.4:21381079-21381098 MS.gene053579:CDS 35.0%
AAACCCTCTTAGTTTCATCG+TGG + chr4.4:21381264-21381283 MS.gene053579:CDS 40.0%
AAAGTGCATATGTTACCACG+GGG - chr4.4:21380460-21380479 None:intergenic 40.0%
AACTTACCAATTAAGCCCCA+AGG + chr4.4:21379517-21379536 MS.gene053579:intron 40.0%
AACTTAGGGACTGTATAGGA+TGG - chr4.4:21380998-21381017 None:intergenic 40.0%
ACCGTTGATATGCCAAATAG+TGG + chr4.4:21378807-21378826 MS.gene053579:CDS 40.0%
ACTGATGCACAGATAGAAAC+AGG - chr4.4:21379586-21379605 None:intergenic 40.0%
ACTTACCAATTAAGCCCCAA+GGG + chr4.4:21379518-21379537 MS.gene053579:intron 40.0%
ACTTTGTTGGATGACTCGAA+TGG - chr4.4:21379409-21379428 None:intergenic 40.0%
AGAAGAATAAGTGGTGTGTC+AGG + chr4.4:21379076-21379095 MS.gene053579:intron 40.0%
AGTGACGAGTATCACTTTGT+TGG - chr4.4:21379422-21379441 None:intergenic 40.0%
ATACTCGTCACTCTACGAAT+TGG + chr4.4:21379430-21379449 MS.gene053579:intron 40.0%
ATATTTCGAGAACCATCGAG+GGG - chr4.4:21380187-21380206 None:intergenic 40.0%
ATCTGGAAAAGTTGCTGTCA+TGG + chr4.4:21380096-21380115 MS.gene053579:CDS 40.0%
ATGGAGTATGTAGGTAAAGG+AGG + chr4.4:21378687-21378706 MS.gene053579:CDS 40.0%
ATTGATGCATCCATACCAAC+TGG + chr4.4:21380205-21380224 MS.gene053579:CDS 40.0%
CAACAGTAGCAAGTGATGAT+GGG + chr4.4:21378652-21378671 MS.gene053579:CDS 40.0%
CAATATTTCGAGAACCATCG+AGG - chr4.4:21380189-21380208 None:intergenic 40.0%
CATTCTGCAATAATGCATGG+TGG - chr4.4:21380051-21380070 None:intergenic 40.0%
CCAACTTGGATAAGTGATGA+TGG + chr4.4:21380139-21380158 MS.gene053579:CDS 40.0%
CCATCATCACTTATCCAAGT+TGG - chr4.4:21380142-21380161 None:intergenic 40.0%
CCATTGTTGGAGTGAAGAAA+AGG - chr4.4:21378575-21378594 None:intergenic 40.0%
CGGTATTTATAAACGCCTTG+AGG + chr4.4:21380237-21380256 MS.gene053579:CDS 40.0%
CTATCAGCCTATTTCCACTT+TGG - chr4.4:21380309-21380328 None:intergenic 40.0%
CTTGTTACTGAAGCCATTGT+TGG - chr4.4:21378588-21378607 None:intergenic 40.0%
GAAGAATAAGTGGTGTGTCA+GGG + chr4.4:21379077-21379096 MS.gene053579:intron 40.0%
GAATGAAGTCTCCTGTTGAA+CGG - chr4.4:21380411-21380430 None:intergenic 40.0%
GATACTGTGAGACAAGGAAA+AGG + chr4.4:21381118-21381137 MS.gene053579:CDS 40.0%
GGGTAGGAACATATATACAG+GGG - chr4.4:21379114-21379133 None:intergenic 40.0%
GTGGGTAGGAACATATATAC+AGG - chr4.4:21379116-21379135 None:intergenic 40.0%
TCAACAGTAGCAAGTGATGA+TGG + chr4.4:21378651-21378670 MS.gene053579:CDS 40.0%
TCCAAACTCCCTAAAAAGAG+AGG - chr4.4:21381367-21381386 None:intergenic 40.0%
TCCCTATCAGAACCACTATT+TGG - chr4.4:21378822-21378841 None:intergenic 40.0%
TTCTGCAATAATGCATGGTG+GGG - chr4.4:21380049-21380068 None:intergenic 40.0%
TTGCTGAATTCACTCCAAAG+TGG + chr4.4:21380292-21380311 MS.gene053579:CDS 40.0%
TTTAGGGAGTTTGGAAGACA+TGG + chr4.4:21381372-21381391 MS.gene053579:CDS 40.0%
TTTGGAAGACATGGAAGAGT+TGG + chr4.4:21381381-21381400 MS.gene053579:CDS 40.0%
! AGTCTTTGGTGCAGTTTAAC+TGG - chr4.4:21381343-21381362 None:intergenic 40.0%
! CATCGAACTTTGTTGTATGG+GGG + chr4.4:21381196-21381215 MS.gene053579:CDS 40.0%
! CCATCGAACTTTGTTGTATG+GGG + chr4.4:21381195-21381214 MS.gene053579:CDS 40.0%
! CCTTTTCTTCACTCCAACAA+TGG + chr4.4:21378572-21378591 MS.gene053579:CDS 40.0%
! CGGCCTTGTATAGTTGAATT+AGG + chr4.4:21379349-21379368 MS.gene053579:intron 40.0%
! CTCCATCGAACTTTGTTGTA+TGG + chr4.4:21381193-21381212 MS.gene053579:CDS 40.0%
! GGAAAGTTTGAAGCTTTGGT+CGG - chr4.4:21378536-21378555 None:intergenic 40.0%
! GGTTGGAAAGTTTGAAGCTT+TGG - chr4.4:21378540-21378559 None:intergenic 40.0%
! TACCTTGCAGAGTACTTCTT+AGG - chr4.4:21381151-21381170 None:intergenic 40.0%
! TGATGGGTCTGTTACATTGA+TGG + chr4.4:21378668-21378687 MS.gene053579:CDS 40.0%
! TGCTACTGTTGATGAAGATG+AGG - chr4.4:21378643-21378662 None:intergenic 40.0%
!! AAGTGATGATGGTCCATATG+TGG + chr4.4:21380150-21380169 MS.gene053579:CDS 40.0%
!! ATCCTAAGAAGTACTCTGCA+AGG + chr4.4:21381146-21381165 MS.gene053579:CDS 40.0%
!! GAAGGTGATGAGTTGATAGA+AGG - chr4.4:21378514-21378533 None:intergenic 40.0%
!! GCCAAATAGTGGTTCTGATA+GGG + chr4.4:21378818-21378837 MS.gene053579:CDS 40.0%
!! TCCTCTCTTTTTAGGGAGTT+TGG + chr4.4:21381363-21381382 MS.gene053579:CDS 40.0%
!! TGCCAAATAGTGGTTCTGAT+AGG + chr4.4:21378817-21378836 MS.gene053579:CDS 40.0%
!!! ACAAGCTGGTTTTGTAGAGA+TGG + chr4.4:21379281-21379300 MS.gene053579:intron 40.0%
!!! CAAGCTGGTTTTGTAGAGAT+GGG + chr4.4:21379282-21379301 MS.gene053579:intron 40.0%
!!! CTCTCTTGTTTTGTCACTCA+GGG + chr4.4:21381032-21381051 MS.gene053579:intron 40.0%
AGCATTAAAATTCCTCCCCG+TGG + chr4.4:21380442-21380461 MS.gene053579:CDS 45.0%
CCCCATACAACAAAGTTCGA+TGG - chr4.4:21381198-21381217 None:intergenic 45.0%
CGTCACTCTACGAATTGGTT+TGG + chr4.4:21379435-21379454 MS.gene053579:intron 45.0%
GAGGATCCGATGGAAAAAGT+AGG + chr4.4:21381302-21381321 MS.gene053579:CDS 45.0%
GAGTATGTAGGTAAAGGAGG+TGG + chr4.4:21378690-21378709 MS.gene053579:CDS 45.0%
GCTCCACGATGAAACTAAGA+GGG - chr4.4:21381270-21381289 None:intergenic 45.0%
GGAAATAGGCTGATAGCTTC+TGG + chr4.4:21380313-21380332 MS.gene053579:CDS 45.0%
GGGAATCATGACAAAATCGG+TGG + chr4.4:21378987-21379006 MS.gene053579:intron 45.0%
GTAGGTAAAGGAGGTGGAAT+TGG + chr4.4:21378696-21378715 MS.gene053579:CDS 45.0%
GTTGGAGTGAAGAAAAGGGT+TGG - chr4.4:21378570-21378589 None:intergenic 45.0%
TGCTCCACGATGAAACTAAG+AGG - chr4.4:21381271-21381290 None:intergenic 45.0%
! AACTTTGTTGTATGGGGGTG+TGG + chr4.4:21381201-21381220 MS.gene053579:CDS 45.0%
! AGTTTGAAGCTTTGGTCGGA+AGG - chr4.4:21378532-21378551 None:intergenic 45.0%
! GAAGTACCCAAGACTGATAG+TGG - chr4.4:21378618-21378637 None:intergenic 45.0%
! GCAGATTATCTAGCTCCTCA+AGG - chr4.4:21380255-21380274 None:intergenic 45.0%
!! CGGGGAGGAATTTTAATGCT+TGG - chr4.4:21380442-21380461 None:intergenic 45.0%
!! TCTGCATTACCTTTGGCTCT+GGG + chr4.4:21380365-21380384 MS.gene053579:CDS 45.0%
!! TTGATTGGCCTGAAGGCTTA+AGG + chr4.4:21381086-21381105 MS.gene053579:CDS 45.0%
!!! GCTCTCTTGTTTTGTCACTC+AGG + chr4.4:21381031-21381050 MS.gene053579:intron 45.0%
ACAAGACGAAGATGGTCCCT+CGG - chr4.4:21381235-21381254 None:intergenic 50.0%
AGCAAAGCCTTCTCCTCTGT+GGG - chr4.4:21380277-21380296 None:intergenic 50.0%
AGTTTCATCGTGGAGCAAGC+TGG + chr4.4:21381274-21381293 MS.gene053579:CDS 50.0%
GAAGACCCTTGGGGCTTAAT+TGG - chr4.4:21379526-21379545 None:intergenic 50.0%
GCTAGATAATCTGCCCACAG+AGG + chr4.4:21380261-21380280 MS.gene053579:CDS 50.0%
GGATCTGTCACGACCACATA+TGG - chr4.4:21380166-21380185 None:intergenic 50.0%
TAATCTGCCCACAGAGGAGA+AGG + chr4.4:21380267-21380286 MS.gene053579:CDS 50.0%
TACCCACTGAGCTAAGCTCA+CGG + chr4.4:21379129-21379148 MS.gene053579:intron 50.0%
TTCACTCTCGACCGTTCAAC+AGG + chr4.4:21380397-21380416 MS.gene053579:CDS 50.0%
! CTCTGCATTACCTTTGGCTC+TGG + chr4.4:21380364-21380383 MS.gene053579:CDS 50.0%
ACCCACTGAGCTAAGCTCAC+GGG + chr4.4:21379130-21379149 MS.gene053579:intron 55.0%
CAGCAAAGCCTTCTCCTCTG+TGG - chr4.4:21380278-21380297 None:intergenic 55.0%
GGTGTGTCAGGGTTCGAACT+CGG + chr4.4:21379088-21379107 MS.gene053579:intron 55.0%
GTGAGCTTAGCTCAGTGGGT+AGG - chr4.4:21379130-21379149 None:intergenic 55.0%
GTGCATATGTTACCACGGGG+AGG - chr4.4:21380457-21380476 None:intergenic 55.0%
TCATCGTGGAGCAAGCTGGT+GGG + chr4.4:21381278-21381297 MS.gene053579:CDS 55.0%
TGCATGTGTCCCAGAGCCAA+AGG - chr4.4:21380377-21380396 None:intergenic 55.0%
TTCATCGTGGAGCAAGCTGG+TGG + chr4.4:21381277-21381296 MS.gene053579:CDS 55.0%
CCCACTGAGCTAAGCTCACG+GGG + chr4.4:21379131-21379150 MS.gene053579:intron 60.0%
CCCCGTGAGCTTAGCTCAGT+GGG - chr4.4:21379134-21379153 None:intergenic 60.0%
GGGTGTGGCGATGAATCCGA+GGG + chr4.4:21381216-21381235 MS.gene053579:CDS 60.0%
GTCGTGACAGATCCCCTCGA+TGG + chr4.4:21380172-21380191 MS.gene053579:CDS 60.0%
TCCCCGTGAGCTTAGCTCAG+TGG - chr4.4:21379135-21379154 None:intergenic 60.0%
GCTGGTGGGAGAGGATCCGA+TGG + chr4.4:21381292-21381311 MS.gene053579:CDS 65.0%
GGGGTGTGGCGATGAATCCG+AGG + chr4.4:21381215-21381234 MS.gene053579:CDS 65.0%
GTGGAGCAAGCTGGTGGGAG+AGG + chr4.4:21381283-21381302 MS.gene053579:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 21378486 21381453 21378486 ID=MS.gene053579
chr4.4 mRNA 21378486 21381453 21378486 ID=MS.gene053579.t1;Parent=MS.gene053579
chr4.4 exon 21378486 21378869 21378486 ID=MS.gene053579.t1.exon1;Parent=MS.gene053579.t1
chr4.4 CDS 21378486 21378869 21378486 ID=cds.MS.gene053579.t1;Parent=MS.gene053579.t1
chr4.4 exon 21380067 21380463 21380067 ID=MS.gene053579.t1.exon2;Parent=MS.gene053579.t1
chr4.4 CDS 21380067 21380463 21380067 ID=cds.MS.gene053579.t1;Parent=MS.gene053579.t1
chr4.4 exon 21381053 21381453 21381053 ID=MS.gene053579.t1.exon3;Parent=MS.gene053579.t1
chr4.4 CDS 21381053 21381453 21381053 ID=cds.MS.gene053579.t1;Parent=MS.gene053579.t1
Gene Sequence

>MS.gene053579

ATGCAGTCAGCAGCAACAACAACACCCTTCTATCAACTCATCACCTTCCGACCAAAGCTTCAAACTTTCCAACCAAAAATTCCAACCCTTTTCTTCACTCCAACAATGGCTTCAGTAACAAGAGTAAAACCACTATCAGTCTTGGGTACTTCTTCCTCATCTTCATCAACAGTAGCAAGTGATGATGGGTCTGTTACATTGATGGAGTATGTAGGTAAAGGAGGTGGAATTGGTGTGAATGATGATTTGGTGATTTTGATTGATCATATACAGTATGCTTGTAAGAGAATTGCAGCTCTTATAGCTTCTCCTTTCAATTATACCGTTGATATGCCAAATAGTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTATATCGGTGTGTTTTTCTTCTCTATTGAATTCCATGAGTTTGGATGATTTTTTTTTTCCCTTTTTGATTGTCTTGGTTAGTTTTGTCATGTTTTTTCGTTGTGTTTGTGTGTTGTTGTTAATTGGGAATCATGACAAAATCGGTGGTTGAAAATATTGGGAAAAACTTTTTTTTTTTTTGTCAAGTAGCCACAATGGCTAGAAATTCTCTTAAGAAGAATAAGTGGTGTGTCAGGGTTCGAACTCGGCCCCTGTATATATGTTCCTACCCACTGAGCTAAGCTCACGGGGACATTAACTCAATATAGCATAAATTAGGTATAAAAAACACTTTAAAAGTCGGTTTTGTAAGCATGAATTAGATCAACTATAGCATTAGAGTCTATCTATTCATGTCATCCACCAAATTACCTTTGTAACAAGCTGGTTTTGTAGAGATGGGTTAAATCTGATACTAAAACTTATTAGAAAATAAGTCATCTAGGTCGGCCTTGTATAGTTGAATTAGGCCAAATATAAAAATATTGTATAGCGTTAGTCTATCCATTCGAGTCATCCAACAAAGTGATACTCGTCACTCTACGAATTGGTTTGGATTAGTTAGACCTGATATTTAAACCTAATAGAAAATGAGTCATCCTTGTGTTTTCATATAACTTACCAATTAAGCCCCAAGGGTCTTCAAAATTTTGAGAATTGAGGGTTTCATATCATTTCATGCCTGTTTCTATCTGTGCATCAGTTGAACCACTCATCGAAAATTAATGTAAGCTACCCCTTATATCTAAGTTGTAGAACATCATCATGAGAATTTCTTGACTGCTGATAGTGATATATCTACTTATAAATCCTTAGAAACTCTTATGTTAGAGTGTGTTGAAGGTTATATATTCTTGACTCAAGTCTATGTATGTAAGTCTTGCATGAGATATATAACCTATATTTCCATTATGACAAACTGTTCTATTAATGTTGTTAAATGGATTGTTGGGCTAATAATTTTGATCTTATGTCAGAATTGGTCCTATTTTTAAACCCATTACTGATGTACCATACTAGTCTTGAATGTTGACTGTCATATCTAAATTCTTTCTAGCCATTATGTATGTAAAAGGCTGTGTAATTTACTTTCTTAACAAAACCCTTTATTAAAAGGAAAAAGAGAATCTGAGTCATCAATTATCCCCACCATGCATTATTGCAGAATGAAATTATCTTGTCATCACTTCAAAAATCTGGAAAAGTTGCTGTCATGGCTTCTGAAGAAAATGATACACCAACTTGGATAAGTGATGATGGTCCATATGTGGTCGTGACAGATCCCCTCGATGGTTCTCGAAATATTGATGCATCCATACCAACTGGTACAATTTTCGGTATTTATAAACGCCTTGAGGAGCTAGATAATCTGCCCACAGAGGAGAAGGCTTTGCTGAATTCACTCCAAAGTGGAAATAGGCTGATAGCTTCTGGTTATGTTCTTTATTCATCTGCAACTATACTCTGCATTACCTTTGGCTCTGGGACACATGCATTCACTCTCGACCGTTCAACAGGAGACTTCATTCTGACAAATCCAAGCATTAAAATTCCTCCCCGTGGTAACATATGCACTTTAATTATGACATATACACAAATATTTACAGATCTAATATCAACTTTCCTAATTTGATAGATATTTTATAACTCCTATCTTCTGTTATATTATCAAATGTTGGAAGCATCTTACATAAGGCTAATTTTCTTTCATTGGTTATTTTCATTGTTTTCTTACTTCATGTAGACATTAATGCTTATAATTTAAGGCCCTTTCTTGATAAATAGCTTAACTAAGCACTTTAGCACAAGCGCTTATCATATAAATGCTTATGTATAAGCTATGTCTATAGCAAAAGATAAAATAAAGTTAAACTATTTTCATATAAACTATAAATTGTTTTCATAAACTATAAATTGTTTTCATAAACTATCCTGAAGAGCTTATAAAAATAAACTGAAAACAGGCTATGGACATGTCAAAGTTGTTTCCACTGAAAACAACTTATGGACTTGTCAAAATTTGTTTCCATAAACTCAACCAAACAGTTTCACAACTCACAAATGTTCATGTCTACGGATAAGTTCAAATAAGTCCATCCTATACAGTCCCTAAGTTTATGTTGTTGACTGCTCTCTTGTTTTGTCACTCAGGGCAAATATATTCTGTGAATGATGCAAGATATTTTGATTGGCCTGAAGGCTTAAGGAAATATATTGATACTGTGAGACAAGGAAAAGGTAGATATCCTAAGAAGTACTCTGCAAGGTATATATGCTCTCTAGTAGCTGATCTCCATCGAACTTTGTTGTATGGGGGTGTGGCGATGAATCCGAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATCGTGGAGCAAGCTGGTGGGAGAGGATCCGATGGAAAAAGTAGGATTCTTTCTCTTCAACCAGTTAAACTGCACCAAAGACTTCCTCTCTTTTTAGGGAGTTTGGAAGACATGGAAGAGTTGGAAAGTTATGGAGACGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA

Protein sequence

>MS.gene053579.t1

MQSAATTTPFYQLITFRPKLQTFQPKIPTLFFTPTMASVTRVKPLSVLGTSSSSSSTVASDDGSVTLMEYVGKGGGIGVNDDLVILIDHIQYACKRIAALIASPFNYTVDMPNSGSDRDAPKPLDIISNEIILSSLQKSGKVAVMASEENDTPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDNLPTEEKALLNSLQSGNRLIASGYVLYSSATILCITFGSGTHAFTLDRSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKSRILSLQPVKLHQRLPLFLGSLEDMEELESYGDVQQKVNPGYEV