AlfalfaGEDB | MS.gene020322

M. sativa cultivar XinJiangDaYe / MS.gene020322

KEGG: -
GO: GO:0006629 GO:0008150 GO:0008152 GO:0044238 GO:0071704
PFAM: PF01764.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020322.t1	XP_013449828.1	92.8	503	36	0	1	503	1	503	7.10E-285	989.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020322.t1	Q3EBR6	57.9	432	173	6	71	497	98	525	8.0e-152	538.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020322.t1	A0A072U3F4	92.8	503	36	0	1	503	1	503	5.1e-285	989.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene020322	MS.gene052346	PPI
MS.gene020322	MS.gene006510	PPI
MS.gene031785	MS.gene020322	PPI
MS.gene28990	MS.gene020322	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020322.t1	MTR_7g096120	92.843	503	36	0	1	503	1	503	0.0	967
MS.gene020322.t1	MTR_7g096140	97.162	458	13	0	1	458	1	458	0.0	948
MS.gene020322.t1	MTR_4g077070	53.613	429	183	10	73	495	99	517	4.72e-168	485
MS.gene020322.t1	MTR_1995s0010	97.309	223	6	0	197	419	1	223	9.33e-163	460
MS.gene020322.t1	MTR_2g015690	40.196	408	216	5	74	474	20	406	2.38e-100	308
MS.gene020322.t1	MTR_4g087810	39.430	421	218	8	74	488	13	402	5.59e-98	301
MS.gene020322.t1	MTR_4g087830	38.480	421	222	8	74	488	4	393	1.30e-96	298
MS.gene020322.t1	MTR_7g006400	41.477	352	174	10	74	418	105	431	1.40e-84	270
MS.gene020322.t1	MTR_4g080100	34.000	450	238	7	52	475	14	430	8.86e-83	263
MS.gene020322.t1	MTR_5g013230	39.050	379	198	12	74	437	135	495	1.67e-81	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020322.t1	AT2G30550	57.870	432	173	6	71	497	98	525	0.0	537
MS.gene020322.t1	AT1G06800	57.243	428	173	7	74	495	85	508	0.0	524
MS.gene020322.t1	AT2G30550	60.393	356	132	6	71	421	98	449	2.99e-161	466
MS.gene020322.t1	AT1G51440	49.027	514	224	12	20	502	15	521	1.12e-159	464
MS.gene020322.t1	AT1G06800	59.207	353	134	7	74	420	85	433	4.82e-156	451
MS.gene020322.t1	AT1G30370	42.469	405	216	7	74	473	114	506	1.92e-109	335
MS.gene020322.t1	AT1G05800	42.077	366	186	9	59	419	66	410	1.84e-93	292
MS.gene020322.t1	AT1G06250	38.293	410	222	6	74	474	5	392	5.29e-90	281
MS.gene020322.t1	AT2G31690	40.310	387	207	10	66	447	80	447	2.97e-88	279
MS.gene020322.t1	AT4G18550	36.029	408	232	4	76	475	21	407	4.44e-88	276

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Find 122 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAATGCATCATAAC+AGG	0.381110	7.2:+14060232	None:intergenic
AAATCTTGCCTCCAATTTGG+TGG	0.500957	7.2:+14057064	None:intergenic
AAATGCACGGTGAAGATGAT+TGG	0.402324	7.2:-14060325	MS.gene020322:CDS
AAATGCATCATAACAGGCTT+GGG	0.481652	7.2:+14060238	None:intergenic
AACGATGTTCGAGTAGAAGC+AGG	0.537151	7.2:-14059630	MS.gene020322:CDS
AACTACCAATCGAAAAGGCA+TGG	0.602251	7.2:-14060352	MS.gene020322:CDS
AAGAAAGTGGATTCGGATCT+GGG	0.462189	7.2:+14060527	None:intergenic
AAGGCATGGCGCAAAATGCA+CGG	0.592136	7.2:-14060338	MS.gene020322:CDS
AATATGGTGAAGACCGAAGA+TGG	0.533831	7.2:-14057034	MS.gene020322:CDS
AATGCACGGTGAAGATGATT+GGG	0.537535	7.2:-14060324	MS.gene020322:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACACGGTTAAATGTTA+GGG	-	chr7.2:14058070-14058089	MS.gene020322:intron	30.0%
ATATGAAGCAACCACTAAAA+GGG	-	chr7.2:14060354-14060373	MS.gene020322:CDS	30.0%
ATTAGTTCAGATCGCATTAT+TGG	+	chr7.2:14057219-14057238	None:intergenic	30.0%
CAACCAATTCATACGAAATA+TGG	-	chr7.2:14060157-14060176	MS.gene020322:CDS	30.0%
CATATTTCGTATGAATTGGT+TGG	+	chr7.2:14060159-14060178	None:intergenic	30.0%
CGAGATTTCTTAAAGAAATC+TGG	+	chr7.2:14057414-14057433	None:intergenic	30.0%
GAAGTTAGTATTACGTTAAC+GGG	-	chr7.2:14057999-14058018	MS.gene020322:intron	30.0%
GACAATACCCTATATTCATA+GGG	-	chr7.2:14059233-14059252	MS.gene020322:CDS	30.0%
GATGAAACAACAAAACAGAT+AGG	-	chr7.2:14057495-14057514	MS.gene020322:intron	30.0%
GCAAGATTTGAATAGGAATA+TGG	-	chr7.2:14060444-14060463	MS.gene020322:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	14056931	14060585	14056931	ID=MS.gene020322
chr7.2	mRNA	14056931	14060585	14056931	ID=MS.gene020322.t1;Parent=MS.gene020322
chr7.2	exon	14060000	14060585	14060000	ID=MS.gene020322.t1.exon1;Parent=MS.gene020322.t1
chr7.2	CDS	14060000	14060585	14060000	ID=cds.MS.gene020322.t1;Parent=MS.gene020322.t1
chr7.2	exon	14059090	14059762	14059090	ID=MS.gene020322.t1.exon2;Parent=MS.gene020322.t1
chr7.2	CDS	14059090	14059762	14059090	ID=cds.MS.gene020322.t1;Parent=MS.gene020322.t1
chr7.2	exon	14056931	14057183	14056931	ID=MS.gene020322.t1.exon3;Parent=MS.gene020322.t1
chr7.2	CDS	14056931	14057183	14056931	ID=cds.MS.gene020322.t1;Parent=MS.gene020322.t1

Gene Sequence

>MS.gene020322

ATGGCTGTATCAATCTCAAACATGCTCATAGCCTTTCCCAGATCCGAATCCACTTTCTTCTTCGGATCCAACTCCAACCACCTCAAATTCCAAACAACACAACCAATAACCCTAACAACAAAAAAACTCACCACAAAATGCACCACAACCCAATCCAACACCATCACACAACTCCAATCACAACCCACAAAACAATCATCAAAACTTACTGAACTACCAATCGAAAAGGCATGGCGCAAAATGCACGGTGAAGATGATTGGGTTGGCCTTTTGGATCCAATGGATCCAATAATGCGATCTGAACTAATCCGTTATGGAGAGATGTCCCAAGCCTGTTATGATGCATTTGATTTTGATCCATATTCAAAATATTGTGGTAGTTGCAAACACCCACACCTTGAATTTTTCCCATCGTTAGATCTTCCACACATAGGGTATGAGGTGACACGCTACCTCTACGCCACAGCAAATGTTAACGTCCCAGATTTCTTTAAGAAATCTCGATGGCCAGATAAATATTGGAGCGAACACGCAAATTGGATGGGATACATAGCCGTTTCAAACGATGAAACAACAAAACAGATAGGTGTGTGGATTAACGTTTCCAAAATATTTTTGAGTGGATGTTACTCCCTCCACTATCAAATATAAGAAATAATTGGTAAAAAAAAGTATATGTATTTAGTCCAAAATTTGAACTACTATATGCAACTTCACTTGACCAATTTCTTTGTATACTTTATATAGGAAAAAATATTTTGCAAATGAACTCTTAATTAAAATAATGAGTTTTCCCTAACGATGTTTATGTTTGGAACTACAGGTCGTAGAGACGTCGTCGTTGCTTGGCGAGGTACTGTGACTCATGTTGAATGGGTAGCCAATCTTCAAAATTTTCTTAAACCTATTTACCAAGACATTCCTTGTCCAGACAACGATGTTCGAGTAGAAGCAGGTTTTCTTGATATGTACACCGATAGACAAACAAAAGACGGTTATTGCAAATATTCTGCTAGAGAACAAGTTTTAGGAGAAGTGAAAAGGTTGTTAGAGAAATTTCCTAATGAAGAAGTTAGTATTACGTTAACGGGACATAGTTTAGGGAGTGCTATGGCAACATTAAGTGCGTTTGATATAGCAGAAACACGGTTAAATGTTAGGGAAAATGGTGAAAAAATTCATGTTTCAGTATTTTCATTTTCTGGACCTAGGGTTGGGAACGTGAAATTTAAAGGGAGATTGGAGAAACATTTAGGGGTTAAGATTTTGAGGGTTCATAATAAGCATGATATGGTGCCAAAGTCACCAGGGTTTCTTATTAATGAGAAATCGCCTGAGTGGTTATTAAAGTTTGCTGAGGATATTGATATTCCATGGTGTTACACTCATGTTGGAGTTGAGTTAGAGTTGGACCACAAGATTTCTCCATTTTTGAATCCTAATGCTGATGCTGCATGTGCTCATAACTTGGAGGCCCACTTGCACATACTCGATGGGTAAGTCTTTCTGTCTTCAACTTAATTAGTCCAACCACGTATTTTGCATGTGCATCTCTAGTTTCTTTGATTGATGATAGGTAATAAACATTTTTAAAAATATAAATGTATATTTTAAATATTTAATTTATGTACATCATCATAAAAAATTATAACATATCATACATATGCATATCAATGGTGCATTGATCCATGACTAAAAAAGATATACGTTGTCACAATATTTAACGAGCATGATAAATCGCGTGTTTTTAAATAATAATAAAATGATTTGAAATAAAAAAATATTAAGGGAGGAGGTAACATTGGCAAAGACGCCAATTAATTACTGTAATATACTATAGTTCAATGATATTTGAGTTTAAGTTTGTTCGGTTATGCCTTAACAAAAATTGACTTTGAATGATTTGATTTTGTAAAAAACATTTTTCTTAAAAATTAGTTAAATGTGAAGTATGATGAACGATAAAATTTGATTAAATCATATATACATACCAAAAATGCAAATCCTCACTCCAAATCAATTAGAAATTGGGTTGCACTTCGATGACTCTGTGTTTAGTGATTTTGATGACTTTTTCTCAATCTCTTTTTTAATCAATAATTATCTTTCATCAAAATAATTTATTTTAATTATTTATCTATGACACTCTTTCATCTAAAATACACTAAAGTCACCCAAATATTTTCCGAAAAATAATATATGAGCATCTATGTTGCAACAACTATTTTAACAACCCTATGAATATAAGGTATATTTTTGTAAAAGCATCATGTTTTGAAACTTTTTTTCCTTTTACTTTTATGACAATACCCTATATTCATAGGGTTGTCAAAATAGTTATTGTGAATTAGAAACTCATATCATTTCTCTTGTGTGAATGCCTAAAAAAAATTATCGATCGTTATCTATCGTGTCCGGGGGTTTGAGGGGGACCATGACCAATTAGACACTTTAACACGCAACAATGATCTTCAGGACTAGAAAGAGGTCCCCTTACGGACCTATCATAGGTCACCGTCCTTAGATATTAAATCACAAAAAAAAAATGCGAGTGTTTACTTAACAATTACCTATATTTTATTTAATCTGTATAGAAGAGTTAAATAAATGAGTAGTATTACTTTAACAATTATTTTTATTTCTGCCAGTTATTTAATAAACTGAAATTTAATTACTGCGTACTAGGTAATGACAAAAGTTTATAGAGATTCAATTAAATTTTACTGTTATATTATGTTATAGAAAGAACATGGTAGATAATTCATCTATTTAATATCAAACAAAATAGACACATTCTCTAGAGTGGATAATTCGGATGTCTTTGTGGAGTGGATAATTCAGATGTGTTTATAGAGGATGACACCTTTAAAAGGACCCTCTCTTTTCACTTTTTCATAAACCCAACTTAATAAATTAATTAAAAACAATCAAAAAAAATTCTTTTGAAATAACATTCAACAATCAAATGTTGTTGAAATATAATGACATAGAATTACCAATAAGACCTATTTAATAAATTTTCATGAGGTGTCGAGTTGGAAAAATTAGATACTTATTAGATATTGGTATTAAAAACTATAAAATAGGTCAAGTATACATCAGAGACCCACTTAAACATTTAAATGAGTGCGCTCTATGCGGATGCTCTTGTTTTTTAAAATATATTCTCATATGCCTATCTTTTTCATTGGTATGGGCGGACAATATAAAGATTTGTTTACATTACCAACCAATTCATACGAAATATGGTTTATGATTGGTTGACGGTTTATCAAAGTTAGTCTCAATTATATCATATAATTGAGTGTCATATAAAAAAATTATACTGTTAACTATTTTTGAATGGCAAAATTTGTATATATGAGCAAAATATTAATAAAGTATAACTTTGATGATGAGCAGGTACCATGGGAGCAACCGTGGATATGAAGCAACCACTAAAAGGGACATTGCTTTGGTGAATAAGGCTTGTGACTTTGTGAAAGATGAGCACTCTGTGCCACCAAATTGGAGGCAAGATTTGAATAGGAATATGGTGAAGACCGAAGATGGACGTTGGGTGCTGGCTCAACGCCCACAACTTGCAGATACTCATCATGAAGACATTGAGCCTTATCTCTCCCAGATAGGACTCATCTCTTCATCTAATAAATAA

Protein sequence

>MS.gene020322.t1

MAVSISNMLIAFPRSESTFFFGSNSNHLKFQTTQPITLTTKKLTTKCTTTQSNTITQLQSQPTKQSSKLTELPIEKAWRKMHGEDDWVGLLDPMDPIMRSELIRYGEMSQACYDAFDFDPYSKYCGSCKHPHLEFFPSLDLPHIGYEVTRYLYATANVNVPDFFKKSRWPDKYWSEHANWMGYIAVSNDETTKQIGRRDVVVAWRGTVTHVEWVANLQNFLKPIYQDIPCPDNDVRVEAGFLDMYTDRQTKDGYCKYSAREQVLGEVKRLLEKFPNEEVSITLTGHSLGSAMATLSAFDIAETRLNVRENGEKIHVSVFSFSGPRVGNVKFKGRLEKHLGVKILRVHNKHDMVPKSPGFLINEKSPEWLLKFAEDIDIPWCYTHVGVELELDHKISPFLNPNADAACAHNLEAHLHILDGYHGSNRGYEATTKRDIALVNKACDFVKDEHSVPPNWRQDLNRNMVKTEDGRWVLAQRPQLADTHHEDIEPYLSQIGLISSSNK