Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031785.t1 | XP_003607369.1 | 97.5 | 435 | 11 | 0 | 25 | 459 | 100 | 534 | 1.80E-258 | 901.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031785.t1 | Q9C8J6 | 70.7 | 427 | 112 | 5 | 28 | 443 | 90 | 514 | 3.8e-185 | 649.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031785.t1 | G7JRN3 | 97.5 | 435 | 11 | 0 | 25 | 459 | 100 | 534 | 1.3e-258 | 901.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031785 | MS.gene020321 | PPI |
| MS.gene018754 | MS.gene031785 | PPI |
| MS.gene031785 | MS.gene020322 | PPI |
| MS.gene031785 | MS.gene46312 | PPI |
| MS.gene031785 | MS.gene04832 | PPI |
| MS.gene031785 | MS.gene018755 | PPI |
| MS.gene031785 | MS.gene46313 | PPI |
| MS.gene031785 | MS.gene04829 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031785.t1 | MTR_4g077070 | 96.818 | 440 | 14 | 0 | 20 | 459 | 95 | 534 | 0.0 | 900 |
| MS.gene031785.t1 | MTR_7g096120 | 52.212 | 452 | 195 | 11 | 1 | 442 | 55 | 495 | 1.22e-166 | 479 |
| MS.gene031785.t1 | MTR_7g096140 | 52.289 | 415 | 178 | 10 | 1 | 406 | 55 | 458 | 5.28e-154 | 445 |
| MS.gene031785.t1 | MTR_2g015690 | 43.415 | 410 | 195 | 8 | 24 | 420 | 19 | 404 | 4.79e-107 | 323 |
| MS.gene031785.t1 | MTR_4g087830 | 40.758 | 422 | 209 | 10 | 24 | 435 | 3 | 393 | 2.33e-99 | 303 |
| MS.gene031785.t1 | MTR_4g087810 | 39.192 | 421 | 217 | 9 | 24 | 435 | 12 | 402 | 1.20e-96 | 297 |
| MS.gene031785.t1 | MTR_7g006400 | 45.143 | 350 | 161 | 10 | 25 | 366 | 105 | 431 | 3.86e-94 | 293 |
| MS.gene031785.t1 | MTR_4g080100 | 36.111 | 432 | 215 | 9 | 27 | 425 | 30 | 433 | 3.68e-87 | 273 |
| MS.gene031785.t1 | MTR_5g013230 | 38.601 | 386 | 201 | 7 | 18 | 385 | 128 | 495 | 7.52e-84 | 268 |
| MS.gene031785.t1 | MTR_7g081620 | 38.903 | 401 | 195 | 9 | 21 | 386 | 65 | 450 | 2.21e-81 | 259 |
| MS.gene031785.t1 | MTR_7g081645 | 39.678 | 373 | 184 | 9 | 24 | 382 | 74 | 419 | 1.19e-80 | 256 |
| MS.gene031785.t1 | MTR_4g099510 | 40.476 | 378 | 196 | 8 | 18 | 385 | 122 | 480 | 6.84e-78 | 252 |
| MS.gene031785.t1 | MTR_1995s0010 | 51.754 | 228 | 98 | 6 | 147 | 367 | 1 | 223 | 1.10e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031785.t1 | AT1G51440 | 70.370 | 432 | 115 | 5 | 23 | 443 | 85 | 514 | 0.0 | 646 |
| MS.gene031785.t1 | AT1G06800 | 56.502 | 446 | 177 | 9 | 4 | 439 | 66 | 504 | 7.76e-179 | 510 |
| MS.gene031785.t1 | AT2G30550 | 55.982 | 443 | 179 | 7 | 7 | 440 | 86 | 521 | 9.80e-178 | 508 |
| MS.gene031785.t1 | AT1G06800 | 56.684 | 374 | 147 | 7 | 4 | 368 | 66 | 433 | 7.67e-149 | 431 |
| MS.gene031785.t1 | AT2G30550 | 56.150 | 374 | 149 | 6 | 4 | 369 | 83 | 449 | 1.29e-148 | 432 |
| MS.gene031785.t1 | AT1G30370 | 43.750 | 432 | 210 | 9 | 20 | 439 | 109 | 519 | 2.43e-122 | 367 |
| MS.gene031785.t1 | AT1G05800 | 47.309 | 353 | 158 | 9 | 23 | 367 | 78 | 410 | 1.27e-98 | 304 |
| MS.gene031785.t1 | AT2G31690 | 45.763 | 354 | 165 | 11 | 23 | 367 | 86 | 421 | 4.35e-95 | 295 |
| MS.gene031785.t1 | AT1G06250 | 39.753 | 405 | 208 | 7 | 29 | 420 | 9 | 390 | 2.41e-93 | 289 |
| MS.gene031785.t1 | AT4G18550 | 40.394 | 406 | 204 | 10 | 29 | 420 | 23 | 404 | 1.31e-92 | 287 |
| MS.gene031785.t1 | AT4G18550 | 40.394 | 406 | 204 | 10 | 29 | 420 | 40 | 421 | 2.41e-92 | 286 |
| MS.gene031785.t1 | AT2G42690 | 36.659 | 431 | 216 | 9 | 29 | 429 | 8 | 411 | 6.25e-87 | 272 |
| MS.gene031785.t1 | AT2G44810 | 40.260 | 385 | 180 | 11 | 23 | 382 | 84 | 443 | 3.35e-84 | 266 |
| MS.gene031785.t1 | AT2G44810 | 40.584 | 377 | 174 | 11 | 31 | 382 | 2 | 353 | 7.78e-84 | 262 |
| MS.gene031785.t1 | AT4G16820 | 40.513 | 390 | 186 | 10 | 14 | 384 | 116 | 478 | 3.39e-80 | 258 |
| MS.gene031785.t1 | AT4G18550 | 42.105 | 266 | 139 | 7 | 29 | 283 | 40 | 301 | 3.39e-63 | 207 |
| MS.gene031785.t1 | AT1G06250 | 40.134 | 299 | 148 | 5 | 130 | 420 | 1 | 276 | 4.01e-63 | 207 |
| MS.gene031785.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 150 | 306 | 100 | 238 | 3.34e-11 | 64.3 |
| MS.gene031785.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 150 | 306 | 100 | 238 | 3.94e-11 | 64.3 |
| MS.gene031785.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 150 | 306 | 101 | 239 | 4.45e-11 | 64.7 |
| MS.gene031785.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 150 | 306 | 100 | 238 | 4.50e-11 | 64.7 |
| MS.gene031785.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 150 | 306 | 100 | 238 | 6.69e-11 | 64.3 |
| MS.gene031785.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 150 | 306 | 100 | 238 | 6.69e-11 | 64.3 |
| MS.gene031785.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 150 | 306 | 112 | 250 | 9.29e-11 | 63.9 |
| MS.gene031785.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 150 | 306 | 112 | 250 | 9.29e-11 | 63.9 |
Find 109 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAACTGAAATTAAAT+TGG | 0.207992 | 4.3:+31467701 | MS.gene031785:CDS |
| AATTTAATATGGTTTCAAAA+AGG | 0.225064 | 4.3:+31467829 | MS.gene031785:CDS |
| TTAGATTTCTTGAAGAATTT+AGG | 0.245553 | 4.3:-31465407 | None:intergenic |
| TTTGAAGGAAAATGGTGATT+TGG | 0.252255 | 4.3:+31467743 | MS.gene031785:CDS |
| CCTGTTTCTACTTTGATTGA+TGG | 0.275271 | 4.3:-31467243 | None:intergenic |
| TTGAAGGAAAATGGTGATTT+GGG | 0.292625 | 4.3:+31467744 | MS.gene031785:CDS |
| GCTTACGACATAGCCGAATT+AGG | 0.294321 | 4.3:+31467435 | MS.gene031785:CDS |
| AGTGCAGGATTGTTCTTTCT+TGG | 0.310372 | 4.3:-31467283 | None:intergenic |
| TGGAGACAAGATGAGAATAA+AGG | 0.322904 | 4.3:+31467915 | MS.gene031785:CDS |
| AAATCCAAGGCGATAACAAC+TGG | 0.343166 | 4.3:+31465168 | MS.gene031785:CDS |
| TGCATAGAGGTAGCGGCTTA+TGG | 0.364333 | 4.3:-31465366 | None:intergenic |
| GATGATGTTCACTCCTAATT+CGG | 0.369822 | 4.3:-31467448 | None:intergenic |
| GGCTTTCGTTGAGCGATGTA+TGG | 0.379405 | 4.3:+31465141 | MS.gene031785:CDS |
| CGCGAACGAGTAAACCGTTA+TGG | 0.379883 | 4.3:-31467499 | None:intergenic |
| CGTTCGCGGGGCCGAGAGTT+GGG | 0.383970 | 4.3:+31467514 | MS.gene031785:CDS |
| CAAATCACGTGGTCCTTGAT+TGG | 0.386663 | 4.3:-31468067 | None:intergenic |
| ATAAGAGTTGTGATCTTCTA+AGG | 0.392001 | 4.3:+31467868 | MS.gene031785:CDS |
| TGTGGAGCCCTTATGCTAAC+TGG | 0.405947 | 4.3:+31465441 | MS.gene031785:CDS |
| CTTCCCAGTTGTTATCGCCT+TGG | 0.418732 | 4.3:-31465172 | None:intergenic |
| TTGAAACTGAAATTTCTCAT+TGG | 0.419763 | 4.3:-31467634 | None:intergenic |
| TCGTTCGCGGGGCCGAGAGT+TGG | 0.421350 | 4.3:+31467513 | MS.gene031785:CDS |
| GGAATTTGCACTTTAAAGAA+AGG | 0.421543 | 4.3:+31467535 | MS.gene031785:CDS |
| GCAAGATGATGTGCAATATC+TGG | 0.423197 | 4.3:-31468002 | None:intergenic |
| CATCTTCCTCTTCGTGCAGT+TGG | 0.426552 | 4.3:-31465082 | None:intergenic |
| TTCTCATTGGTTATAATCCC+CGG | 0.428050 | 4.3:-31467621 | None:intergenic |
| GGAGACAAGATGAGAATAAA+GGG | 0.429109 | 4.3:+31467916 | MS.gene031785:CDS |
| GACAAGGTTCCAACCGTGCC+GGG | 0.432120 | 4.3:+31467603 | MS.gene031785:CDS |
| GCTTCCACTAGAGGCCGTTC+AGG | 0.434299 | 4.3:-31467972 | None:intergenic |
| GAAGAAGAGATTAAACGTTT+AGG | 0.434314 | 4.3:+31465491 | MS.gene031785:CDS |
| TGATGCTGATTTCTTCATCT+TGG | 0.436804 | 4.3:-31467368 | None:intergenic |
| CCTTGGAGTTATGCTCATGT+TGG | 0.439341 | 4.3:+31467684 | MS.gene031785:CDS |
| CCATCAATCAAAGTAGAAAC+AGG | 0.440706 | 4.3:+31467243 | MS.gene031785:CDS |
| CTGTTTCTACTTTGATTGAT+GGG | 0.442102 | 4.3:-31467242 | None:intergenic |
| TATCCCATCCAGTTAGCATA+AGG | 0.442825 | 4.3:-31465449 | None:intergenic |
| TTTAATCTCTTCTTCGTTGG+TGG | 0.443070 | 4.3:-31465483 | None:intergenic |
| GATCTTCTAAGGAGTGAGTT+TGG | 0.443725 | 4.3:+31467879 | MS.gene031785:CDS |
| GCGAACGAGTAAACCGTTAT+GGG | 0.455006 | 4.3:-31467498 | None:intergenic |
| GTTATAATCCCCGGCACGGT+TGG | 0.455037 | 4.3:-31467612 | None:intergenic |
| ATAACGGTTTACTCGTTCGC+GGG | 0.455590 | 4.3:+31467501 | MS.gene031785:CDS |
| CGTTTAGGACGCCGTGACAT+AGG | 0.461230 | 4.3:+31465506 | MS.gene031785:CDS |
| CATTTGATGGATGGGTATCA+TGG | 0.469639 | 4.3:+31467795 | MS.gene031785:CDS |
| AAAGAAAGGTGTGAAGAACT+TGG | 0.475583 | 4.3:+31467549 | MS.gene031785:CDS |
| GGGGTGTACACATAATTTAG+AGG | 0.480604 | 4.3:+31467764 | MS.gene031785:CDS |
| TATGTCGTAAGCGCTGAGTA+TGG | 0.482762 | 4.3:-31467424 | None:intergenic |
| CTCTTTATATAGTGATTGCA+TGG | 0.493736 | 4.3:+31467145 | MS.gene031785:intron |
| ATGATTTCTTTGCGTAGGAT+AGG | 0.496867 | 4.3:-31465215 | None:intergenic |
| TTATATAGTGATTGCATGGA+GGG | 0.497247 | 4.3:+31467149 | MS.gene031785:intron |
| GGGATGGTTCAAACCGATGA+TGG | 0.497989 | 4.3:+31467936 | MS.gene031785:CDS |
| ACGTTTAATCTCTTCTTCGT+TGG | 0.501727 | 4.3:-31465486 | None:intergenic |
| CACAACCCACCTTCCATCAT+CGG | 0.503475 | 4.3:-31467949 | None:intergenic |
| GAGAAACTTTACATGGGAGA+TGG | 0.511262 | 4.3:+31465338 | MS.gene031785:CDS |
| GATCAAAACTCAAAATATTG+TGG | 0.513294 | 4.3:+31465284 | MS.gene031785:CDS |
| TGACAAGGTTCCAACCGTGC+CGG | 0.514175 | 4.3:+31467602 | MS.gene031785:CDS |
| TTTCTTTGAGAAACTTTACA+TGG | 0.516670 | 4.3:+31465331 | MS.gene031785:CDS |
| TTGCGTAGGATAGGATCCAT+TGG | 0.518415 | 4.3:-31465206 | None:intergenic |
| GCATTGGTAGCTTCCAATCA+AGG | 0.520891 | 4.3:+31468054 | MS.gene031785:CDS |
| TGTGCCTGAACGGCCTCTAG+TGG | 0.525389 | 4.3:+31467968 | MS.gene031785:CDS |
| AAGTGCAAATTCCCAACTCT+CGG | 0.525702 | 4.3:-31467525 | None:intergenic |
| TGAGAATGAACAATAAGTGC+AGG | 0.528179 | 4.3:-31467298 | None:intergenic |
| GCACCGTGACATACATAGAA+TGG | 0.533607 | 4.3:+31467172 | MS.gene031785:CDS |
| GGAAGGTCTATTAGATCCAA+TGG | 0.534597 | 4.3:+31465190 | MS.gene031785:CDS |
| ATCCCATCCAGTTAGCATAA+GGG | 0.536253 | 4.3:-31465448 | None:intergenic |
| GAGCCCTTATGCTAACTGGA+TGG | 0.539926 | 4.3:+31465445 | MS.gene031785:CDS |
| CGTAAGCGCTGAGTATGGCT+AGG | 0.545238 | 4.3:-31467419 | None:intergenic |
| CGCAAAGAAATCATTCGCTA+TGG | 0.545659 | 4.3:+31465224 | MS.gene031785:CDS |
| AGTTTCTCAAAGAAATGTGC+AGG | 0.546930 | 4.3:-31465323 | None:intergenic |
| AAAGTATATAGAAGATACAT+TGG | 0.550653 | 4.3:+31467656 | MS.gene031785:CDS |
| TTGATGTTGCATAGAGGTAG+CGG | 0.552703 | 4.3:-31465373 | None:intergenic |
| ATTTCTTGAAGAATTTAGGA+AGG | 0.554007 | 4.3:-31465403 | None:intergenic |
| GAAATCAGCATCACAGTCAC+AGG | 0.555372 | 4.3:+31467378 | MS.gene031785:CDS |
| ACAGTCACAGGACACAGTCT+TGG | 0.567549 | 4.3:+31467390 | MS.gene031785:CDS |
| AACAACTAACGTCCCCATAA+CGG | 0.568948 | 4.3:+31467485 | MS.gene031785:CDS |
| TTCTCATCTTGTCTCCAATG+TGG | 0.570582 | 4.3:-31467909 | None:intergenic |
| AGTTTGGTGTTCCACCACAT+TGG | 0.571065 | 4.3:+31467895 | MS.gene031785:CDS |
| AATCGCATTCAAAATCGCAT+TGG | 0.579406 | 4.3:+31468038 | MS.gene031785:CDS |
| CATAACGGTTTACTCGTTCG+CGG | 0.581601 | 4.3:+31467500 | MS.gene031785:CDS |
| GAAGGTGGGTTGTGCCTGAA+CGG | 0.583884 | 4.3:+31467958 | MS.gene031785:CDS |
| AGCCCTTATGCTAACTGGAT+GGG | 0.586402 | 4.3:+31465446 | MS.gene031785:CDS |
| TCATCTTGTCTCCAATGTGG+TGG | 0.589893 | 4.3:-31467906 | None:intergenic |
| GGTGGATGAGCTTCCACTAG+AGG | 0.592564 | 4.3:-31467981 | None:intergenic |
| TGGTTCAAACCGATGATGGA+AGG | 0.596118 | 4.3:+31467940 | MS.gene031785:CDS |
| TTCAAACCGATGATGGAAGG+TGG | 0.599261 | 4.3:+31467943 | MS.gene031785:CDS |
| ATTGGTTATAATCCCCGGCA+CGG | 0.605638 | 4.3:-31467616 | None:intergenic |
| AGCGAATGATTTCTTTGCGT+AGG | 0.609122 | 4.3:-31465220 | None:intergenic |
| TATATAGTGATTGCATGGAG+GGG | 0.612515 | 4.3:+31467150 | MS.gene031785:intron |
| TATCCATTCTATGTATGTCA+CGG | 0.618336 | 4.3:-31467175 | None:intergenic |
| ACAAGGTTCCAACCGTGCCG+GGG | 0.622173 | 4.3:+31467604 | MS.gene031785:CDS |
| TTTATATAGTGATTGCATGG+AGG | 0.625462 | 4.3:+31467148 | MS.gene031785:intron |
| TATGAACCAACTGCACGAAG+AGG | 0.628820 | 4.3:+31465076 | None:intergenic |
| ATTTGATGGATGGGTATCAT+GGG | 0.630818 | 4.3:+31467796 | MS.gene031785:CDS |
| CAAGGCGATAACAACTGGGA+AGG | 0.632086 | 4.3:+31465173 | MS.gene031785:CDS |
| TAACGGTTTACTCGTTCGCG+GGG | 0.632196 | 4.3:+31467502 | MS.gene031785:CDS |
| ACAAGATGAGAATAAAGGGA+TGG | 0.636684 | 4.3:+31467920 | MS.gene031785:CDS |
| GTAAGCGCTGAGTATGGCTA+GGG | 0.639224 | 4.3:-31467418 | None:intergenic |
| TTCTTTGAGAAACTTTACAT+GGG | 0.642102 | 4.3:+31465332 | MS.gene031785:CDS |
| GGAGTGAACATCATCGAAGA+CGG | 0.642474 | 4.3:+31467456 | MS.gene031785:CDS |
| TGATGTTTGATGTTGCATAG+AGG | 0.642978 | 4.3:-31465379 | None:intergenic |
| AATCCAAGGCGATAACAACT+GGG | 0.645053 | 4.3:+31465169 | MS.gene031785:CDS |
| CGAACGAGTAAACCGTTATG+GGG | 0.657882 | 4.3:-31467497 | None:intergenic |
| CCAACATGAGCATAACTCCA+AGG | 0.660120 | 4.3:-31467684 | None:intergenic |
| TAGGGTACATACCTATGTCA+CGG | 0.660260 | 4.3:-31465517 | None:intergenic |
| TGAAGGAAAATGGTGATTTG+GGG | 0.667189 | 4.3:+31467745 | MS.gene031785:CDS |
| AATCTAAGATCTCTTCAGTG+TGG | 0.668543 | 4.3:+31465423 | MS.gene031785:CDS |
| GATGTATGGAGAGAAATCCA+AGG | 0.668805 | 4.3:+31465155 | MS.gene031785:CDS |
| TCAAACCGATGATGGAAGGT+GGG | 0.670175 | 4.3:+31467944 | MS.gene031785:CDS |
| ACATCGCTCAACGAAAGCCG+TGG | 0.676341 | 4.3:-31465137 | None:intergenic |
| AGATGATGTGCAATATCTGG+TGG | 0.691855 | 4.3:-31467999 | None:intergenic |
| AATACATAATATTCATGACA+AGG | 0.698783 | 4.3:+31467587 | MS.gene031785:CDS |
| AAGAAGAAGAAGAATCACCA+CGG | 0.725260 | 4.3:+31465120 | MS.gene031785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAATAAAA+AGG | + | chr4.3:31466088-31466107 | MS.gene031785:intron | 0.0% |
| !! | AAAAAATAATAATAATAAAA+AGG | - | chr4.3:31467057-31467076 | None:intergenic | 0.0% |
| !! | GAAAGATAAAAAATTTAATA+TGG | + | chr4.3:31467818-31467837 | MS.gene031785:CDS | 10.0% |
| !!! | ATGTTTTTAAAAGAAATAAT+TGG | + | chr4.3:31466830-31466849 | MS.gene031785:intron | 10.0% |
| !!! | TTATTACTTTTGATTTTTTA+GGG | - | chr4.3:31466008-31466027 | None:intergenic | 10.0% |
| !!! | TTTATTACTTTTGATTTTTT+AGG | - | chr4.3:31466009-31466028 | None:intergenic | 10.0% |
| !! | AAATTTCTTCAAAAAAGTAA+AGG | + | chr4.3:31467019-31467038 | MS.gene031785:intron | 15.0% |
| !! | AATTTAATATGGTTTCAAAA+AGG | + | chr4.3:31467829-31467848 | MS.gene031785:CDS | 15.0% |
| !! | ACTAAAAAAAGAAAAAAGAA+AGG | + | chr4.3:31466675-31466694 | MS.gene031785:intron | 15.0% |
| !! | ATAATGAAGGTAAAAAAAAT+AGG | - | chr4.3:31466182-31466201 | None:intergenic | 15.0% |
| !! | ATTTAATATGGTTTCAAAAA+GGG | + | chr4.3:31467830-31467849 | MS.gene031785:CDS | 15.0% |
| !! | ATTTCAATTATATATTGAGA+TGG | - | chr4.3:31466770-31466789 | None:intergenic | 15.0% |
| !! | CTAAAAAAAGAAAAAAGAAA+GGG | + | chr4.3:31466676-31466695 | MS.gene031785:intron | 15.0% |
| !! | TCAAAAGTAATAAAATTCAT+TGG | + | chr4.3:31466015-31466034 | MS.gene031785:intron | 15.0% |
| !! | TCAGAAACAATATAAATATA+TGG | - | chr4.3:31465614-31465633 | None:intergenic | 15.0% |
| !!! | AAAAAACTAGTATTTTTCTA+TGG | - | chr4.3:31466970-31466989 | None:intergenic | 15.0% |
| !!! | AATATAAATATATGGTCTTT+TGG | - | chr4.3:31465606-31465625 | None:intergenic | 15.0% |
| !!! | AATATTAACAACTTTTAATG+CGG | + | chr4.3:31465898-31465917 | MS.gene031785:intron | 15.0% |
| !!! | AATCAAACAGTTTTAAAAAA+TGG | + | chr4.3:31466277-31466296 | MS.gene031785:intron | 15.0% |
| !!! | ATATAAATATATGGTCTTTT+GGG | - | chr4.3:31465605-31465624 | None:intergenic | 15.0% |
| !!! | ATCAAACAGTTTTAAAAAAT+GGG | + | chr4.3:31466278-31466297 | MS.gene031785:intron | 15.0% |
| !!! | GTAATTAAATTAAGAGTATA+GGG | - | chr4.3:31465538-31465557 | None:intergenic | 15.0% |
| !!! | TATTACTTTTGATTTTTTAG+GGG | - | chr4.3:31466007-31466026 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTACAATAATGA+AGG | - | chr4.3:31466195-31466214 | None:intergenic | 15.0% |
| !!! | TTTTTTGAGATAAAATTCAT+TGG | + | chr4.3:31466047-31466066 | MS.gene031785:intron | 15.0% |
| !! | AAAGTATATAGAAGATACAT+TGG | + | chr4.3:31467656-31467675 | MS.gene031785:CDS | 20.0% |
| !! | AACCACTATAATTATTGTTA+TGG | - | chr4.3:31466929-31466948 | None:intergenic | 20.0% |
| !! | AATAATAATAAAAAGGTCCA+AGG | - | chr4.3:31467050-31467069 | None:intergenic | 20.0% |
| !! | AATACATAATATTCATGACA+AGG | + | chr4.3:31467587-31467606 | MS.gene031785:CDS | 20.0% |
| !! | ACAAACTCGTAAATTAAAAA+TGG | - | chr4.3:31466243-31466262 | None:intergenic | 20.0% |
| !! | AGAGAGAAAATCATTATTTA+TGG | - | chr4.3:31466540-31466559 | None:intergenic | 20.0% |
| !! | ATAATAATAAAAAGGTCCAA+GGG | - | chr4.3:31467049-31467068 | None:intergenic | 20.0% |
| !! | GAATATTGCTATAAAAAAGA+TGG | - | chr4.3:31466723-31466742 | None:intergenic | 20.0% |
| !! | TTAAAAGAAATAATTGGTGA+CGG | + | chr4.3:31466836-31466855 | MS.gene031785:intron | 20.0% |
| !! | TTAGATTTCTTGAAGAATTT+AGG | - | chr4.3:31465410-31465429 | None:intergenic | 20.0% |
| !!! | AAAACACTTAATTTTTCAAG+TGG | - | chr4.3:31466477-31466496 | None:intergenic | 20.0% |
| !!! | ACTTATCTTTATTTTATGAG+TGG | - | chr4.3:31465560-31465579 | None:intergenic | 20.0% |
| !!! | GGTAATTAAATTAAGAGTAT+AGG | - | chr4.3:31465539-31465558 | None:intergenic | 20.0% |
| !!! | TCAAACAGTTTTAAAAAATG+GGG | + | chr4.3:31466279-31466298 | MS.gene031785:intron | 20.0% |
| ! | ATTTCTTGAAGAATTTAGGA+AGG | - | chr4.3:31465406-31465425 | None:intergenic | 25.0% |
| ! | CTCCATAACAATAATTATAG+TGG | + | chr4.3:31466924-31466943 | MS.gene031785:intron | 25.0% |
| ! | CTTGAACTAGTAATCTATTA+AGG | + | chr4.3:31466370-31466389 | MS.gene031785:intron | 25.0% |
| ! | GAAAGAAAAAAGTTTGTGAT+TGG | + | chr4.3:31465847-31465866 | MS.gene031785:intron | 25.0% |
| ! | GATCAAAACTCAAAATATTG+TGG | + | chr4.3:31465284-31465303 | MS.gene031785:CDS | 25.0% |
| ! | TAAAAAGGCTTAAAACGATA+CGG | + | chr4.3:31466103-31466122 | MS.gene031785:intron | 25.0% |
| ! | TATTGGCAAAAAAAACATGT+GGG | + | chr4.3:31465817-31465836 | MS.gene031785:intron | 25.0% |
| ! | TCAATTATATATTGAGATGG+TGG | - | chr4.3:31466767-31466786 | None:intergenic | 25.0% |
| ! | TGTTGGAACTGAAATTAAAT+TGG | + | chr4.3:31467701-31467720 | MS.gene031785:CDS | 25.0% |
| ! | TTATTGGCAAAAAAAACATG+TGG | + | chr4.3:31465816-31465835 | MS.gene031785:intron | 25.0% |
| ! | TTGAAACTGAAATTTCTCAT+TGG | - | chr4.3:31467637-31467656 | None:intergenic | 25.0% |
| !! | TATTGTTATGGAGAACATTT+TGG | - | chr4.3:31466917-31466936 | None:intergenic | 25.0% |
| !! | TTCTTTGAGAAACTTTACAT+GGG | + | chr4.3:31465332-31465351 | MS.gene031785:CDS | 25.0% |
| !! | TTTCTTTGAGAAACTTTACA+TGG | + | chr4.3:31465331-31465350 | MS.gene031785:CDS | 25.0% |
| !!! | AGAGTTTAACTTTAAAACAG+AGG | + | chr4.3:31466342-31466361 | MS.gene031785:intron | 25.0% |
| !!! | TAGAAATAGTCCTTTTTTGA+AGG | + | chr4.3:31467728-31467747 | MS.gene031785:CDS | 25.0% |
| AAAAAATGGGGAATTAACTG+TGG | + | chr4.3:31466291-31466310 | MS.gene031785:intron | 30.0% | |
| ACTAATTGACCACTTTACAA+TGG | + | chr4.3:31466315-31466334 | MS.gene031785:intron | 30.0% | |
| AGAAAAAAGTTTGTGATTGG+TGG | + | chr4.3:31465850-31465869 | MS.gene031785:intron | 30.0% | |
| ATAAGAGTTGTGATCTTCTA+AGG | + | chr4.3:31467868-31467887 | MS.gene031785:CDS | 30.0% | |
| CTCTTTATATAGTGATTGCA+TGG | + | chr4.3:31467145-31467164 | MS.gene031785:intron | 30.0% | |
| GAAGAAGAGATTAAACGTTT+AGG | + | chr4.3:31465491-31465510 | MS.gene031785:CDS | 30.0% | |
| TATCCATTCTATGTATGTCA+CGG | - | chr4.3:31467178-31467197 | None:intergenic | 30.0% | |
| TTATATAGTGATTGCATGGA+GGG | + | chr4.3:31467149-31467168 | MS.gene031785:intron | 30.0% | |
| TTGAAGGAAAATGGTGATTT+GGG | + | chr4.3:31467744-31467763 | MS.gene031785:CDS | 30.0% | |
| TTTAGTTATGTTTGTGCGTA+AGG | - | chr4.3:31466661-31466680 | None:intergenic | 30.0% | |
| TTTATATAGTGATTGCATGG+AGG | + | chr4.3:31467148-31467167 | MS.gene031785:intron | 30.0% | |
| TTTGAAGGAAAATGGTGATT+TGG | + | chr4.3:31467743-31467762 | MS.gene031785:CDS | 30.0% | |
| ! | AATTGTTTCTTCTCTCTCTT+TGG | + | chr4.3:31465640-31465659 | MS.gene031785:intron | 30.0% |
| ! | ACTGACTTAGATGTATACAA+TGG | + | chr4.3:31465673-31465692 | MS.gene031785:intron | 30.0% |
| ! | CTTCATGTAGAATGTCTTTT+AGG | - | chr4.3:31467206-31467225 | None:intergenic | 30.0% |
| ! | GGAATTTGCACTTTAAAGAA+AGG | + | chr4.3:31467535-31467554 | MS.gene031785:CDS | 30.0% |
| ! | TCACCATTTTCCTTCAAAAA+AGG | - | chr4.3:31467741-31467760 | None:intergenic | 30.0% |
| !! | ATGGAGAACATTTTGGTATT+TGG | - | chr4.3:31466910-31466929 | None:intergenic | 30.0% |
| !! | CTGTTTCTACTTTGATTGAT+GGG | - | chr4.3:31467245-31467264 | None:intergenic | 30.0% |
| !! | TACTTTTGCATTTGATGGAT+GGG | + | chr4.3:31467787-31467806 | MS.gene031785:CDS | 30.0% |
| !! | TTGCTATTCTTTTGACATGT+GGG | + | chr4.3:31465788-31465807 | MS.gene031785:intron | 30.0% |
| !!! | AGTCCTTTTTTGAAGGAAAA+TGG | + | chr4.3:31467735-31467754 | MS.gene031785:CDS | 30.0% |
| !!! | TTTGCTATTCTTTTGACATG+TGG | + | chr4.3:31465787-31465806 | MS.gene031785:intron | 30.0% |
| AAGAAGAAGAAGAATCACCA+CGG | + | chr4.3:31465120-31465139 | MS.gene031785:CDS | 35.0% | |
| AATCGCATTCAAAATCGCAT+TGG | + | chr4.3:31468038-31468057 | MS.gene031785:CDS | 35.0% | |
| ACAAGATGAGAATAAAGGGA+TGG | + | chr4.3:31467920-31467939 | MS.gene031785:CDS | 35.0% | |
| ACGTTTAATCTCTTCTTCGT+TGG | - | chr4.3:31465489-31465508 | None:intergenic | 35.0% | |
| ACTCTTACTCCATTGTAAAG+TGG | - | chr4.3:31466327-31466346 | None:intergenic | 35.0% | |
| AGTTTCTCAAAGAAATGTGC+AGG | - | chr4.3:31465326-31465345 | None:intergenic | 35.0% | |
| ATAATAAAAAGGTCCAAGGG+CGG | - | chr4.3:31467046-31467065 | None:intergenic | 35.0% | |
| ATGATTTCTTTGCGTAGGAT+AGG | - | chr4.3:31465218-31465237 | None:intergenic | 35.0% | |
| CCATCAATCAAAGTAGAAAC+AGG | + | chr4.3:31467243-31467262 | MS.gene031785:CDS | 35.0% | |
| GATGATGTTCACTCCTAATT+CGG | - | chr4.3:31467451-31467470 | None:intergenic | 35.0% | |
| GGAGACAAGATGAGAATAAA+GGG | + | chr4.3:31467916-31467935 | MS.gene031785:CDS | 35.0% | |
| TATATAGTGATTGCATGGAG+GGG | + | chr4.3:31467150-31467169 | MS.gene031785:intron | 35.0% | |
| TGAAGGAAAATGGTGATTTG+GGG | + | chr4.3:31467745-31467764 | MS.gene031785:CDS | 35.0% | |
| TGAGAATGAACAATAAGTGC+AGG | - | chr4.3:31467301-31467320 | None:intergenic | 35.0% | |
| TGATGTTTGATGTTGCATAG+AGG | - | chr4.3:31465382-31465401 | None:intergenic | 35.0% | |
| TGCGGAGATAGAGAAATTTA+TGG | + | chr4.3:31465916-31465935 | MS.gene031785:intron | 35.0% | |
| TGGAGACAAGATGAGAATAA+AGG | + | chr4.3:31467915-31467934 | MS.gene031785:CDS | 35.0% | |
| TTTAATCTCTTCTTCGTTGG+TGG | - | chr4.3:31465486-31465505 | None:intergenic | 35.0% | |
| ! | AAAGAAAGGTGTGAAGAACT+TGG | + | chr4.3:31467549-31467568 | MS.gene031785:CDS | 35.0% |
| ! | AATCTAAGATCTCTTCAGTG+TGG | + | chr4.3:31465423-31465442 | MS.gene031785:CDS | 35.0% |
| ! | ATTTGATGGATGGGTATCAT+GGG | + | chr4.3:31467796-31467815 | MS.gene031785:CDS | 35.0% |
| ! | GTACTTTTGCATTTGATGGA+TGG | + | chr4.3:31467786-31467805 | MS.gene031785:CDS | 35.0% |
| ! | TTCTCATTGGTTATAATCCC+CGG | - | chr4.3:31467624-31467643 | None:intergenic | 35.0% |
| !! | CCTGTTTCTACTTTGATTGA+TGG | - | chr4.3:31467246-31467265 | None:intergenic | 35.0% |
| !! | TGATGCTGATTTCTTCATCT+TGG | - | chr4.3:31467371-31467390 | None:intergenic | 35.0% |
| !!! | AAGATACATTGGCTTTTCCT+TGG | + | chr4.3:31467667-31467686 | MS.gene031785:CDS | 35.0% |
| !!! | AGAGGTACTTTTGCATTTGA+TGG | + | chr4.3:31467782-31467801 | MS.gene031785:CDS | 35.0% |
| !!! | GAAGTCGTTTTATTTCTGAG+AGG | - | chr4.3:31467338-31467357 | None:intergenic | 35.0% |
| !!! | TGACATGTGGGTTTTGTTAT+TGG | + | chr4.3:31465800-31465819 | MS.gene031785:intron | 35.0% |
| AAATCCAAGGCGATAACAAC+TGG | + | chr4.3:31465168-31465187 | MS.gene031785:CDS | 40.0% | |
| AACAACTAACGTCCCCATAA+CGG | + | chr4.3:31467485-31467504 | MS.gene031785:CDS | 40.0% | |
| AAGTGCAAATTCCCAACTCT+CGG | - | chr4.3:31467528-31467547 | None:intergenic | 40.0% | |
| AATCCAAGGCGATAACAACT+GGG | + | chr4.3:31465169-31465188 | MS.gene031785:CDS | 40.0% | |
| AGATGATGTGCAATATCTGG+TGG | - | chr4.3:31468002-31468021 | None:intergenic | 40.0% | |
| AGCGAATGATTTCTTTGCGT+AGG | - | chr4.3:31465223-31465242 | None:intergenic | 40.0% | |
| AGTGCAGGATTGTTCTTTCT+TGG | - | chr4.3:31467286-31467305 | None:intergenic | 40.0% | |
| ATCCCATCCAGTTAGCATAA+GGG | - | chr4.3:31465451-31465470 | None:intergenic | 40.0% | |
| CGCAAAGAAATCATTCGCTA+TGG | + | chr4.3:31465224-31465243 | MS.gene031785:CDS | 40.0% | |
| GAGAAACTTTACATGGGAGA+TGG | + | chr4.3:31465338-31465357 | MS.gene031785:CDS | 40.0% | |
| GATGTATGGAGAGAAATCCA+AGG | + | chr4.3:31465155-31465174 | MS.gene031785:CDS | 40.0% | |
| GCAAGATGATGTGCAATATC+TGG | - | chr4.3:31468005-31468024 | None:intergenic | 40.0% | |
| GGAAGGTCTATTAGATCCAA+TGG | + | chr4.3:31465190-31465209 | MS.gene031785:CDS | 40.0% | |
| GGGGTGTACACATAATTTAG+AGG | + | chr4.3:31467764-31467783 | MS.gene031785:CDS | 40.0% | |
| TAGGGTACATACCTATGTCA+CGG | - | chr4.3:31465520-31465539 | None:intergenic | 40.0% | |
| TATCCCATCCAGTTAGCATA+AGG | - | chr4.3:31465452-31465471 | None:intergenic | 40.0% | |
| TTCTCATCTTGTCTCCAATG+TGG | - | chr4.3:31467912-31467931 | None:intergenic | 40.0% | |
| TTGATGTTGCATAGAGGTAG+CGG | - | chr4.3:31465376-31465395 | None:intergenic | 40.0% | |
| ! | CATTTGATGGATGGGTATCA+TGG | + | chr4.3:31467795-31467814 | MS.gene031785:CDS | 40.0% |
| ! | GATCTTCTAAGGAGTGAGTT+TGG | + | chr4.3:31467879-31467898 | MS.gene031785:CDS | 40.0% |
| AAAAAGTAAAGGTCCGCCCT+TGG | + | chr4.3:31467030-31467049 | MS.gene031785:intron | 45.0% | |
| AGCCCTTATGCTAACTGGAT+GGG | + | chr4.3:31465446-31465465 | MS.gene031785:CDS | 45.0% | |
| ATAACGGTTTACTCGTTCGC+GGG | + | chr4.3:31467501-31467520 | MS.gene031785:CDS | 45.0% | |
| ATTGGTTATAATCCCCGGCA+CGG | - | chr4.3:31467619-31467638 | None:intergenic | 45.0% | |
| CATAACGGTTTACTCGTTCG+CGG | + | chr4.3:31467500-31467519 | MS.gene031785:CDS | 45.0% | |
| CCAACATGAGCATAACTCCA+AGG | - | chr4.3:31467687-31467706 | None:intergenic | 45.0% | |
| CCTTGGAGTTATGCTCATGT+TGG | + | chr4.3:31467684-31467703 | MS.gene031785:CDS | 45.0% | |
| CGAACGAGTAAACCGTTATG+GGG | - | chr4.3:31467500-31467519 | None:intergenic | 45.0% | |
| GAAATCAGCATCACAGTCAC+AGG | + | chr4.3:31467378-31467397 | MS.gene031785:CDS | 45.0% | |
| GCACCGTGACATACATAGAA+TGG | + | chr4.3:31467172-31467191 | MS.gene031785:CDS | 45.0% | |
| GCGAACGAGTAAACCGTTAT+GGG | - | chr4.3:31467501-31467520 | None:intergenic | 45.0% | |
| GCTTACGACATAGCCGAATT+AGG | + | chr4.3:31467435-31467454 | MS.gene031785:CDS | 45.0% | |
| GGAGTGAACATCATCGAAGA+CGG | + | chr4.3:31467456-31467475 | MS.gene031785:CDS | 45.0% | |
| TCATCTTGTCTCCAATGTGG+TGG | - | chr4.3:31467909-31467928 | None:intergenic | 45.0% | |
| TTGCGTAGGATAGGATCCAT+TGG | - | chr4.3:31465209-31465228 | None:intergenic | 45.0% | |
| ! | AAAACGATACGGCGCTGAAA+AGG | + | chr4.3:31466114-31466133 | MS.gene031785:intron | 45.0% |
| ! | GCATTGGTAGCTTCCAATCA+AGG | + | chr4.3:31468054-31468073 | MS.gene031785:CDS | 45.0% |
| !! | AGTTTGGTGTTCCACCACAT+TGG | + | chr4.3:31467895-31467914 | MS.gene031785:CDS | 45.0% |
| !! | TATGTCGTAAGCGCTGAGTA+TGG | - | chr4.3:31467427-31467446 | None:intergenic | 45.0% |
| !! | TCAAACCGATGATGGAAGGT+GGG | + | chr4.3:31467944-31467963 | MS.gene031785:CDS | 45.0% |
| !! | TGGTTCAAACCGATGATGGA+AGG | + | chr4.3:31467940-31467959 | MS.gene031785:CDS | 45.0% |
| !! | TTCAAACCGATGATGGAAGG+TGG | + | chr4.3:31467943-31467962 | MS.gene031785:CDS | 45.0% |
| ACAGTCACAGGACACAGTCT+TGG | + | chr4.3:31467390-31467409 | MS.gene031785:CDS | 50.0% | |
| CAAGGCGATAACAACTGGGA+AGG | + | chr4.3:31465173-31465192 | MS.gene031785:CDS | 50.0% | |
| CACAACCCACCTTCCATCAT+CGG | - | chr4.3:31467952-31467971 | None:intergenic | 50.0% | |
| CATCTTCCTCTTCGTGCAGT+TGG | - | chr4.3:31465085-31465104 | None:intergenic | 50.0% | |
| CGCGAACGAGTAAACCGTTA+TGG | - | chr4.3:31467502-31467521 | None:intergenic | 50.0% | |
| CTTCCCAGTTGTTATCGCCT+TGG | - | chr4.3:31465175-31465194 | None:intergenic | 50.0% | |
| GAGCCCTTATGCTAACTGGA+TGG | + | chr4.3:31465445-31465464 | MS.gene031785:CDS | 50.0% | |
| GGCTTTCGTTGAGCGATGTA+TGG | + | chr4.3:31465141-31465160 | MS.gene031785:CDS | 50.0% | |
| GGGATGGTTCAAACCGATGA+TGG | + | chr4.3:31467936-31467955 | MS.gene031785:CDS | 50.0% | |
| TAACGGTTTACTCGTTCGCG+GGG | + | chr4.3:31467502-31467521 | MS.gene031785:CDS | 50.0% | |
| TGTGGAGCCCTTATGCTAAC+TGG | + | chr4.3:31465441-31465460 | MS.gene031785:CDS | 50.0% | |
| ! | GATACGGCGCTGAAAAGGAA+CGG | + | chr4.3:31466119-31466138 | MS.gene031785:intron | 50.0% |
| ! | TGCATAGAGGTAGCGGCTTA+TGG | - | chr4.3:31465369-31465388 | None:intergenic | 50.0% |
| !! | GTAAGCGCTGAGTATGGCTA+GGG | - | chr4.3:31467421-31467440 | None:intergenic | 50.0% |
| ACATCGCTCAACGAAAGCCG+TGG | - | chr4.3:31465140-31465159 | None:intergenic | 55.0% | |
| GGTGGATGAGCTTCCACTAG+AGG | - | chr4.3:31467984-31468003 | None:intergenic | 55.0% | |
| GTTATAATCCCCGGCACGGT+TGG | - | chr4.3:31467615-31467634 | None:intergenic | 55.0% | |
| TGACAAGGTTCCAACCGTGC+CGG | + | chr4.3:31467602-31467621 | MS.gene031785:CDS | 55.0% | |
| ! | CGTTTAGGACGCCGTGACAT+AGG | + | chr4.3:31465506-31465525 | MS.gene031785:CDS | 55.0% |
| !! | CGTAAGCGCTGAGTATGGCT+AGG | - | chr4.3:31467422-31467441 | None:intergenic | 55.0% |
| !! | GAAGGTGGGTTGTGCCTGAA+CGG | + | chr4.3:31467958-31467977 | MS.gene031785:CDS | 55.0% |
| ACAAGGTTCCAACCGTGCCG+GGG | + | chr4.3:31467604-31467623 | MS.gene031785:CDS | 60.0% | |
| GACAAGGTTCCAACCGTGCC+GGG | + | chr4.3:31467603-31467622 | MS.gene031785:CDS | 60.0% | |
| GCTTCCACTAGAGGCCGTTC+AGG | - | chr4.3:31467975-31467994 | None:intergenic | 60.0% | |
| TGTGCCTGAACGGCCTCTAG+TGG | + | chr4.3:31467968-31467987 | MS.gene031785:CDS | 60.0% | |
| CGTTCGCGGGGCCGAGAGTT+GGG | + | chr4.3:31467514-31467533 | MS.gene031785:CDS | 70.0% | |
| TCGTTCGCGGGGCCGAGAGT+TGG | + | chr4.3:31467513-31467532 | MS.gene031785:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 31465077 | 31468085 | 31465077 | ID=MS.gene031785 |
| chr4.3 | mRNA | 31465077 | 31468085 | 31465077 | ID=MS.gene031785.t1;Parent=MS.gene031785 |
| chr4.3 | exon | 31465077 | 31465527 | 31465077 | ID=MS.gene031785.t1.exon1;Parent=MS.gene031785.t1 |
| chr4.3 | CDS | 31465077 | 31465527 | 31465077 | ID=cds.MS.gene031785.t1;Parent=MS.gene031785.t1 |
| chr4.3 | exon | 31467157 | 31468085 | 31467157 | ID=MS.gene031785.t1.exon2;Parent=MS.gene031785.t1 |
| chr4.3 | CDS | 31467157 | 31468085 | 31467157 | ID=cds.MS.gene031785.t1;Parent=MS.gene031785.t1 |
| Gene Sequence |
| Protein sequence |
