Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006510.t1 | XP_003607369.1 | 97.7 | 435 | 10 | 0 | 26 | 460 | 100 | 534 | 1.00E-258 | 902.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006510.t1 | Q9C8J6 | 70.7 | 427 | 112 | 5 | 29 | 444 | 90 | 514 | 5.0e-185 | 648.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006510.t1 | G7JRN3 | 97.7 | 435 | 10 | 0 | 26 | 460 | 100 | 534 | 7.5e-259 | 902.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018755 | MS.gene006510 | PPI |
| MS.gene018754 | MS.gene006510 | PPI |
| MS.gene04832 | MS.gene006510 | PPI |
| MS.gene04829 | MS.gene006510 | PPI |
| MS.gene46313 | MS.gene006510 | PPI |
| MS.gene46312 | MS.gene006510 | PPI |
| MS.gene020322 | MS.gene006510 | PPI |
| MS.gene020321 | MS.gene006510 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006510.t1 | MTR_4g077070 | 97.701 | 435 | 10 | 0 | 26 | 460 | 100 | 534 | 0.0 | 900 |
| MS.gene006510.t1 | MTR_7g096120 | 52.596 | 443 | 194 | 10 | 11 | 443 | 59 | 495 | 1.67e-167 | 481 |
| MS.gene006510.t1 | MTR_7g096140 | 52.709 | 406 | 177 | 9 | 11 | 407 | 59 | 458 | 8.59e-155 | 447 |
| MS.gene006510.t1 | MTR_2g015690 | 43.659 | 410 | 194 | 8 | 25 | 421 | 19 | 404 | 1.16e-107 | 325 |
| MS.gene006510.t1 | MTR_4g087830 | 40.758 | 422 | 209 | 10 | 25 | 436 | 3 | 393 | 1.23e-99 | 304 |
| MS.gene006510.t1 | MTR_4g087810 | 39.192 | 421 | 217 | 9 | 25 | 436 | 12 | 402 | 6.72e-97 | 297 |
| MS.gene006510.t1 | MTR_7g006400 | 45.143 | 350 | 161 | 10 | 26 | 367 | 105 | 431 | 4.89e-94 | 293 |
| MS.gene006510.t1 | MTR_4g080100 | 36.111 | 432 | 215 | 9 | 28 | 426 | 30 | 433 | 5.52e-87 | 273 |
| MS.gene006510.t1 | MTR_5g013230 | 38.667 | 375 | 194 | 7 | 30 | 386 | 139 | 495 | 2.21e-82 | 264 |
| MS.gene006510.t1 | MTR_7g081620 | 39.440 | 393 | 188 | 9 | 30 | 387 | 73 | 450 | 5.24e-81 | 258 |
| MS.gene006510.t1 | MTR_7g081645 | 39.678 | 373 | 184 | 9 | 25 | 383 | 74 | 419 | 7.11e-81 | 256 |
| MS.gene006510.t1 | MTR_1995s0010 | 51.754 | 228 | 98 | 6 | 148 | 368 | 1 | 223 | 9.67e-77 | 239 |
| MS.gene006510.t1 | MTR_4g099510 | 39.947 | 378 | 198 | 8 | 19 | 386 | 122 | 480 | 5.70e-76 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006510.t1 | AT1G51440 | 69.316 | 453 | 126 | 5 | 3 | 444 | 64 | 514 | 0.0 | 648 |
| MS.gene006510.t1 | AT1G06800 | 56.689 | 441 | 175 | 9 | 10 | 440 | 70 | 504 | 2.80e-179 | 511 |
| MS.gene006510.t1 | AT2G30550 | 56.433 | 443 | 177 | 7 | 8 | 441 | 86 | 521 | 3.32e-179 | 512 |
| MS.gene006510.t1 | AT2G30550 | 57.143 | 371 | 144 | 6 | 8 | 370 | 86 | 449 | 6.62e-150 | 435 |
| MS.gene006510.t1 | AT1G06800 | 56.911 | 369 | 145 | 7 | 10 | 369 | 70 | 433 | 5.37e-149 | 432 |
| MS.gene006510.t1 | AT1G30370 | 43.488 | 430 | 210 | 9 | 23 | 440 | 111 | 519 | 1.82e-120 | 362 |
| MS.gene006510.t1 | AT1G05800 | 47.309 | 353 | 158 | 9 | 24 | 368 | 78 | 410 | 1.12e-98 | 304 |
| MS.gene006510.t1 | AT2G31690 | 45.506 | 356 | 167 | 11 | 22 | 368 | 84 | 421 | 3.82e-95 | 295 |
| MS.gene006510.t1 | AT1G06250 | 39.753 | 405 | 208 | 7 | 30 | 421 | 9 | 390 | 7.29e-94 | 290 |
| MS.gene006510.t1 | AT4G18550 | 40.394 | 406 | 204 | 10 | 30 | 421 | 23 | 404 | 5.28e-93 | 288 |
| MS.gene006510.t1 | AT4G18550 | 40.394 | 406 | 204 | 10 | 30 | 421 | 40 | 421 | 8.12e-93 | 288 |
| MS.gene006510.t1 | AT2G42690 | 36.659 | 431 | 216 | 9 | 30 | 430 | 8 | 411 | 4.97e-87 | 272 |
| MS.gene006510.t1 | AT2G44810 | 40.260 | 385 | 180 | 11 | 24 | 383 | 84 | 443 | 3.76e-84 | 266 |
| MS.gene006510.t1 | AT2G44810 | 40.584 | 377 | 174 | 11 | 32 | 383 | 2 | 353 | 6.75e-84 | 262 |
| MS.gene006510.t1 | AT4G16820 | 40.000 | 390 | 188 | 10 | 15 | 385 | 116 | 478 | 1.04e-78 | 254 |
| MS.gene006510.t1 | AT4G18550 | 42.105 | 266 | 139 | 7 | 30 | 284 | 40 | 301 | 1.39e-63 | 208 |
| MS.gene006510.t1 | AT1G06250 | 40.134 | 299 | 148 | 5 | 131 | 421 | 1 | 276 | 2.60e-63 | 207 |
| MS.gene006510.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 2.97e-11 | 64.7 |
| MS.gene006510.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 151 | 307 | 101 | 239 | 3.69e-11 | 65.1 |
| MS.gene006510.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 3.81e-11 | 64.3 |
| MS.gene006510.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 3.88e-11 | 64.7 |
| MS.gene006510.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 6.09e-11 | 64.3 |
| MS.gene006510.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 6.09e-11 | 64.3 |
| MS.gene006510.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 112 | 250 | 8.15e-11 | 63.9 |
| MS.gene006510.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 112 | 250 | 8.15e-11 | 63.9 |
Find 107 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAACTGAAATTAAAT+TGG | 0.207992 | 4.1:+27473568 | MS.gene006510:CDS |
| AATTTAATATGGTTTCAAAA+AGG | 0.225064 | 4.1:+27473696 | MS.gene006510:CDS |
| TTAGATTTCTTGAAGAATTT+AGG | 0.245553 | 4.1:-27471228 | None:intergenic |
| TTTGAAGGAAAATGGTGATT+TGG | 0.252255 | 4.1:+27473610 | MS.gene006510:CDS |
| CCTGTTTCTACTTTGATTGA+TGG | 0.275271 | 4.1:-27473110 | None:intergenic |
| TTGAAGGAAAATGGTGATTT+GGG | 0.292625 | 4.1:+27473611 | MS.gene006510:CDS |
| GCTTACGACATAGCCGAATT+AGG | 0.294321 | 4.1:+27473302 | MS.gene006510:CDS |
| AAATCCAAGGCGAGAACAAC+TGG | 0.302827 | 4.1:+27470989 | MS.gene006510:CDS |
| AGTGCAGGATTGTTCTTTCT+TGG | 0.310372 | 4.1:-27473150 | None:intergenic |
| TGGAGACAAGATGAGAATAA+AGG | 0.322904 | 4.1:+27473782 | MS.gene006510:CDS |
| TGCATAGAGGTAGCGGCTTA+TGG | 0.364333 | 4.1:-27471187 | None:intergenic |
| GATGATGTTCACTCCTAATT+CGG | 0.369822 | 4.1:-27473315 | None:intergenic |
| CTTCCCAGTTGTTCTCGCCT+TGG | 0.372841 | 4.1:-27470993 | None:intergenic |
| GGCTTTCGTTGAGCGATGTA+TGG | 0.379405 | 4.1:+27470962 | MS.gene006510:CDS |
| CGCGAACGAGTAAACCGTTA+TGG | 0.379883 | 4.1:-27473366 | None:intergenic |
| CGTTCGCGGGGCCGAGAGTT+GGG | 0.383970 | 4.1:+27473381 | MS.gene006510:CDS |
| CAAATCACGTGGTCCTTGAT+TGG | 0.386663 | 4.1:-27473934 | None:intergenic |
| ATAAGAGTTGTGATCTTCTA+AGG | 0.392001 | 4.1:+27473735 | MS.gene006510:CDS |
| TGTGGAGCCCTTATGCTAAC+TGG | 0.405947 | 4.1:+27471262 | MS.gene006510:CDS |
| TTGAAACTGAAATTTCTCAT+TGG | 0.419763 | 4.1:-27473501 | None:intergenic |
| TCGTTCGCGGGGCCGAGAGT+TGG | 0.421350 | 4.1:+27473380 | MS.gene006510:CDS |
| GGAATTTGCACTTTAAAGAA+AGG | 0.421543 | 4.1:+27473402 | MS.gene006510:CDS |
| GCAAGATGATGTGCAATATC+TGG | 0.423197 | 4.1:-27473869 | None:intergenic |
| CATCTTCCTCTTCGTGCAGT+TGG | 0.426552 | 4.1:-27470900 | None:intergenic |
| TTCTCATTGGTTATAATCCC+CGG | 0.428050 | 4.1:-27473488 | None:intergenic |
| GGAGACAAGATGAGAATAAA+GGG | 0.429109 | 4.1:+27473783 | MS.gene006510:CDS |
| GACAAGGTTCCAACCGTGCC+GGG | 0.432120 | 4.1:+27473470 | MS.gene006510:CDS |
| GCTTCCACTAGAGGCCGTTC+AGG | 0.434299 | 4.1:-27473839 | None:intergenic |
| GAAGAAGAGATTAAACGTTT+AGG | 0.434314 | 4.1:+27471312 | MS.gene006510:CDS |
| TGATGCTGATTTCTTCATCT+TGG | 0.436804 | 4.1:-27473235 | None:intergenic |
| CCTTGGAGTTATGCTCATGT+TGG | 0.439341 | 4.1:+27473551 | MS.gene006510:CDS |
| CCATCAATCAAAGTAGAAAC+AGG | 0.440706 | 4.1:+27473110 | MS.gene006510:CDS |
| CTGTTTCTACTTTGATTGAT+GGG | 0.442102 | 4.1:-27473109 | None:intergenic |
| TATCCCATCCAGTTAGCATA+AGG | 0.442825 | 4.1:-27471270 | None:intergenic |
| TTTAATCTCTTCTTCGTTGG+TGG | 0.443070 | 4.1:-27471304 | None:intergenic |
| GATCTTCTAAGGAGTGAGTT+TGG | 0.443725 | 4.1:+27473746 | MS.gene006510:CDS |
| GCGAACGAGTAAACCGTTAT+GGG | 0.455006 | 4.1:-27473365 | None:intergenic |
| GTTATAATCCCCGGCACGGT+TGG | 0.455037 | 4.1:-27473479 | None:intergenic |
| ATAACGGTTTACTCGTTCGC+GGG | 0.455590 | 4.1:+27473368 | MS.gene006510:CDS |
| CGTTTAGGACGCCGTGACAT+AGG | 0.461230 | 4.1:+27471327 | MS.gene006510:CDS |
| CATTTGATGGATGGGTATCA+TGG | 0.469639 | 4.1:+27473662 | MS.gene006510:CDS |
| AAAGAAAGGTGTGAAGAACT+TGG | 0.475583 | 4.1:+27473416 | MS.gene006510:CDS |
| GGGGTGTACACATAATTTAG+AGG | 0.480604 | 4.1:+27473631 | MS.gene006510:CDS |
| TATGTCGTAAGCGCTGAGTA+TGG | 0.482762 | 4.1:-27473291 | None:intergenic |
| ATGATTTCTTTGCGTAGGAT+AGG | 0.496867 | 4.1:-27471036 | None:intergenic |
| TTATATAGTGATTGCATGGA+GGG | 0.497327 | 4.1:+27473016 | MS.gene006510:intron |
| GGGATGGTTCAAACCGATGA+TGG | 0.497989 | 4.1:+27473803 | MS.gene006510:CDS |
| ACGTTTAATCTCTTCTTCGT+TGG | 0.501727 | 4.1:-27471307 | None:intergenic |
| CACAACCCACCTTCCATCAT+CGG | 0.503475 | 4.1:-27473816 | None:intergenic |
| TTCTTTATATAGTGATTGCA+TGG | 0.506997 | 4.1:+27473012 | MS.gene006510:intron |
| GAGAAACTTTACATGGGAGA+TGG | 0.511262 | 4.1:+27471159 | MS.gene006510:CDS |
| GATCAAAACTCAAAATATTG+TGG | 0.513294 | 4.1:+27471105 | MS.gene006510:CDS |
| TGACAAGGTTCCAACCGTGC+CGG | 0.514175 | 4.1:+27473469 | MS.gene006510:CDS |
| TTTCTTTGAGAAACTTTACA+TGG | 0.516670 | 4.1:+27471152 | MS.gene006510:CDS |
| TTGCGTAGGATAGGATCCAT+TGG | 0.518415 | 4.1:-27471027 | None:intergenic |
| GCATTGGTAGCTTCCAATCA+AGG | 0.520891 | 4.1:+27473921 | MS.gene006510:CDS |
| TGTGCCTGAACGGCCTCTAG+TGG | 0.525389 | 4.1:+27473835 | MS.gene006510:CDS |
| AAGTGCAAATTCCCAACTCT+CGG | 0.525702 | 4.1:-27473392 | None:intergenic |
| TGAGAATGAACAATAAGTGC+AGG | 0.528179 | 4.1:-27473165 | None:intergenic |
| GCACCGTGACATACATAGAA+TGG | 0.533607 | 4.1:+27473039 | MS.gene006510:CDS |
| GGAAGGTCTATTAGATCCAA+TGG | 0.534597 | 4.1:+27471011 | MS.gene006510:CDS |
| ATCCCATCCAGTTAGCATAA+GGG | 0.536253 | 4.1:-27471269 | None:intergenic |
| GAGCCCTTATGCTAACTGGA+TGG | 0.539926 | 4.1:+27471266 | MS.gene006510:CDS |
| CGTAAGCGCTGAGTATGGCT+AGG | 0.545238 | 4.1:-27473286 | None:intergenic |
| CGCAAAGAAATCATTCGCTA+TGG | 0.545659 | 4.1:+27471045 | MS.gene006510:CDS |
| AGTTTCTCAAAGAAATGTGC+AGG | 0.546930 | 4.1:-27471144 | None:intergenic |
| AAAGTATATAGAAGATACAT+TGG | 0.550653 | 4.1:+27473523 | MS.gene006510:CDS |
| TTGATGTTGCATAGAGGTAG+CGG | 0.552703 | 4.1:-27471194 | None:intergenic |
| ATTTCTTGAAGAATTTAGGA+AGG | 0.554007 | 4.1:-27471224 | None:intergenic |
| GAAATCAGCATCACAGTCAC+AGG | 0.555372 | 4.1:+27473245 | MS.gene006510:CDS |
| ACAGTCACAGGACACAGTCT+TGG | 0.567549 | 4.1:+27473257 | MS.gene006510:CDS |
| AACAACTAACGTCCCCATAA+CGG | 0.568948 | 4.1:+27473352 | MS.gene006510:CDS |
| TTCTCATCTTGTCTCCAATG+TGG | 0.570582 | 4.1:-27473776 | None:intergenic |
| AGTTTGGTGTTCCACCACAT+TGG | 0.571065 | 4.1:+27473762 | MS.gene006510:CDS |
| AATCGCATTCAAAATCGCAT+TGG | 0.579406 | 4.1:+27473905 | MS.gene006510:CDS |
| CATAACGGTTTACTCGTTCG+CGG | 0.581601 | 4.1:+27473367 | MS.gene006510:CDS |
| GAAGGTGGGTTGTGCCTGAA+CGG | 0.583884 | 4.1:+27473825 | MS.gene006510:CDS |
| AGCCCTTATGCTAACTGGAT+GGG | 0.586402 | 4.1:+27471267 | MS.gene006510:CDS |
| TCATCTTGTCTCCAATGTGG+TGG | 0.589893 | 4.1:-27473773 | None:intergenic |
| GGTGGATGAGCTTCCACTAG+AGG | 0.592564 | 4.1:-27473848 | None:intergenic |
| TGGTTCAAACCGATGATGGA+AGG | 0.596118 | 4.1:+27473807 | MS.gene006510:CDS |
| TTCAAACCGATGATGGAAGG+TGG | 0.599261 | 4.1:+27473810 | MS.gene006510:CDS |
| ATTGGTTATAATCCCCGGCA+CGG | 0.605638 | 4.1:-27473483 | None:intergenic |
| AGCGAATGATTTCTTTGCGT+AGG | 0.609122 | 4.1:-27471041 | None:intergenic |
| TATATAGTGATTGCATGGAG+GGG | 0.612515 | 4.1:+27473017 | MS.gene006510:intron |
| TATCCATTCTATGTATGTCA+CGG | 0.618336 | 4.1:-27473042 | None:intergenic |
| ACAAGGTTCCAACCGTGCCG+GGG | 0.622173 | 4.1:+27473471 | MS.gene006510:CDS |
| TTTATATAGTGATTGCATGG+AGG | 0.627945 | 4.1:+27473015 | MS.gene006510:intron |
| TATGAACCAACTGCACGAAG+AGG | 0.628820 | 4.1:+27470894 | None:intergenic |
| ATTTGATGGATGGGTATCAT+GGG | 0.630818 | 4.1:+27473663 | MS.gene006510:CDS |
| TAACGGTTTACTCGTTCGCG+GGG | 0.632196 | 4.1:+27473369 | MS.gene006510:CDS |
| ACAAGATGAGAATAAAGGGA+TGG | 0.636684 | 4.1:+27473787 | MS.gene006510:CDS |
| GTAAGCGCTGAGTATGGCTA+GGG | 0.639224 | 4.1:-27473285 | None:intergenic |
| AATCCAAGGCGAGAACAACT+GGG | 0.639358 | 4.1:+27470990 | MS.gene006510:CDS |
| TTCTTTGAGAAACTTTACAT+GGG | 0.642102 | 4.1:+27471153 | MS.gene006510:CDS |
| GGAGTGAACATCATCGAAGA+CGG | 0.642474 | 4.1:+27473323 | MS.gene006510:CDS |
| TGATGTTTGATGTTGCATAG+AGG | 0.642978 | 4.1:-27471200 | None:intergenic |
| CAAGGCGAGAACAACTGGGA+AGG | 0.645261 | 4.1:+27470994 | MS.gene006510:CDS |
| CGAACGAGTAAACCGTTATG+GGG | 0.657882 | 4.1:-27473364 | None:intergenic |
| CCAACATGAGCATAACTCCA+AGG | 0.660120 | 4.1:-27473551 | None:intergenic |
| TAGGGTACATACCTATGTCA+CGG | 0.660260 | 4.1:-27471338 | None:intergenic |
| TGAAGGAAAATGGTGATTTG+GGG | 0.667189 | 4.1:+27473612 | MS.gene006510:CDS |
| AATCTAAGATCTCTTCAGTG+TGG | 0.668543 | 4.1:+27471244 | MS.gene006510:CDS |
| GATGTATGGAGAGAAATCCA+AGG | 0.668805 | 4.1:+27470976 | MS.gene006510:CDS |
| TCAAACCGATGATGGAAGGT+GGG | 0.670175 | 4.1:+27473811 | MS.gene006510:CDS |
| AGATGATGTGCAATATCTGG+TGG | 0.691855 | 4.1:-27473866 | None:intergenic |
| AATACATAATATTCATGACA+AGG | 0.698783 | 4.1:+27473454 | MS.gene006510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAATAAAA+AGG | + | chr4.1:27471909-27471928 | MS.gene006510:intron | 0.0% |
| !! | AAAAAATAATAATAATAAAA+AGG | - | chr4.1:27472924-27472943 | None:intergenic | 0.0% |
| !! | GAAAGATAAAAAATTTAATA+TGG | + | chr4.1:27473685-27473704 | MS.gene006510:CDS | 10.0% |
| !!! | ATGTTTTTAAAAGAAATAAT+TGG | + | chr4.1:27472695-27472714 | MS.gene006510:intron | 10.0% |
| !!! | TTATTACTTTTGATTTTTTA+GGG | - | chr4.1:27471829-27471848 | None:intergenic | 10.0% |
| !!! | TTTATTACTTTTGATTTTTT+AGG | - | chr4.1:27471830-27471849 | None:intergenic | 10.0% |
| !! | AATTTAATATGGTTTCAAAA+AGG | + | chr4.1:27473696-27473715 | MS.gene006510:CDS | 15.0% |
| !! | ACTAAAAAAAGAAAAAAGAA+AGG | + | chr4.1:27472540-27472559 | MS.gene006510:intron | 15.0% |
| !! | ATTTAATATGGTTTCAAAAA+GGG | + | chr4.1:27473697-27473716 | MS.gene006510:CDS | 15.0% |
| !! | ATTTCAATTATATATTGAGA+TGG | - | chr4.1:27472635-27472654 | None:intergenic | 15.0% |
| !! | CTAAAAAAAGAAAAAAGAAA+GGG | + | chr4.1:27472541-27472560 | MS.gene006510:intron | 15.0% |
| !! | TAATGAAGGTAAAAAAAAAT+AGG | - | chr4.1:27472046-27472065 | None:intergenic | 15.0% |
| !! | TCAAAAGTAATAAAATTCAT+TGG | + | chr4.1:27471836-27471855 | MS.gene006510:intron | 15.0% |
| !! | TCAGAAACAATATAAATATA+TGG | - | chr4.1:27471435-27471454 | None:intergenic | 15.0% |
| !!! | AAAAAACTAGTATTTTTCTA+TGG | - | chr4.1:27472835-27472854 | None:intergenic | 15.0% |
| !!! | AATATAAATATATGGTCTTT+TGG | - | chr4.1:27471427-27471446 | None:intergenic | 15.0% |
| !!! | AATATTAACAACTTTTAATG+CGG | + | chr4.1:27471719-27471738 | MS.gene006510:intron | 15.0% |
| !!! | AATCAAACAGTTTTAAAAAA+TGG | + | chr4.1:27472142-27472161 | MS.gene006510:intron | 15.0% |
| !!! | ACTTATCTTTATTTTATAAG+TGG | - | chr4.1:27471381-27471400 | None:intergenic | 15.0% |
| !!! | ATATAAATATATGGTCTTTT+GGG | - | chr4.1:27471426-27471445 | None:intergenic | 15.0% |
| !!! | ATCAAACAGTTTTAAAAAAT+GGG | + | chr4.1:27472143-27472162 | MS.gene006510:intron | 15.0% |
| !!! | GTAATTAAATTAAGAGTATA+GGG | - | chr4.1:27471359-27471378 | None:intergenic | 15.0% |
| !!! | TATTACTTTTGATTTTTTAG+GGG | - | chr4.1:27471828-27471847 | None:intergenic | 15.0% |
| !!! | TTTTTTGAGATAAAATTCAT+TGG | + | chr4.1:27471868-27471887 | MS.gene006510:intron | 15.0% |
| !! | AAAGTATATAGAAGATACAT+TGG | + | chr4.1:27473523-27473542 | MS.gene006510:CDS | 20.0% |
| !! | AACCACTATAATTATTGTTA+TGG | - | chr4.1:27472794-27472813 | None:intergenic | 20.0% |
| !! | AATAATAATAAAAAGGTCCA+AGG | - | chr4.1:27472917-27472936 | None:intergenic | 20.0% |
| !! | AATACATAATATTCATGACA+AGG | + | chr4.1:27473454-27473473 | MS.gene006510:CDS | 20.0% |
| !! | ACAAACTCGTAAATTAAAAA+TGG | - | chr4.1:27472108-27472127 | None:intergenic | 20.0% |
| !! | AGAGAGAAAATCATTATTTA+TGG | - | chr4.1:27472405-27472424 | None:intergenic | 20.0% |
| !! | ATAATAATAAAAAGGTCCAA+GGG | - | chr4.1:27472916-27472935 | None:intergenic | 20.0% |
| !! | ATTGTTCTTCAAAAAAGTAA+AGG | + | chr4.1:27472886-27472905 | MS.gene006510:intron | 20.0% |
| !! | GAATATTGCTATAAAAAAGA+TGG | - | chr4.1:27472588-27472607 | None:intergenic | 20.0% |
| !! | TTAAAAGAAATAATTGGTGA+CGG | + | chr4.1:27472701-27472720 | MS.gene006510:intron | 20.0% |
| !! | TTAGATTTCTTGAAGAATTT+AGG | - | chr4.1:27471231-27471250 | None:intergenic | 20.0% |
| !!! | AAAACACTTAATTTTTCAAG+TGG | - | chr4.1:27472342-27472361 | None:intergenic | 20.0% |
| !!! | GGTAATTAAATTAAGAGTAT+AGG | - | chr4.1:27471360-27471379 | None:intergenic | 20.0% |
| !!! | TCAAACAGTTTTAAAAAATG+GGG | + | chr4.1:27472144-27472163 | MS.gene006510:intron | 20.0% |
| !!! | TTTTCAATCTACAATAATGA+AGG | - | chr4.1:27472060-27472079 | None:intergenic | 20.0% |
| ! | ATTTCTTGAAGAATTTAGGA+AGG | - | chr4.1:27471227-27471246 | None:intergenic | 25.0% |
| ! | CTCCATAACAATAATTATAG+TGG | + | chr4.1:27472789-27472808 | MS.gene006510:intron | 25.0% |
| ! | CTTGAACTAGTAATCTATTA+AGG | + | chr4.1:27472235-27472254 | MS.gene006510:intron | 25.0% |
| ! | GAAAGAAAAAAGTTTGTGAT+TGG | + | chr4.1:27471668-27471687 | MS.gene006510:intron | 25.0% |
| ! | GATCAAAACTCAAAATATTG+TGG | + | chr4.1:27471105-27471124 | MS.gene006510:CDS | 25.0% |
| ! | TAAAAAGGCTTAAAACGATA+CGG | + | chr4.1:27471924-27471943 | MS.gene006510:intron | 25.0% |
| ! | TATTGGCAAAAAAAACATGT+GGG | + | chr4.1:27471638-27471657 | MS.gene006510:intron | 25.0% |
| ! | TCAATTATATATTGAGATGG+TGG | - | chr4.1:27472632-27472651 | None:intergenic | 25.0% |
| ! | TGTTGGAACTGAAATTAAAT+TGG | + | chr4.1:27473568-27473587 | MS.gene006510:CDS | 25.0% |
| ! | TTATTGGCAAAAAAAACATG+TGG | + | chr4.1:27471637-27471656 | MS.gene006510:intron | 25.0% |
| ! | TTCTTTATATAGTGATTGCA+TGG | + | chr4.1:27473012-27473031 | MS.gene006510:intron | 25.0% |
| ! | TTGAAACTGAAATTTCTCAT+TGG | - | chr4.1:27473504-27473523 | None:intergenic | 25.0% |
| !! | TATTGTTATGGAGAACATTT+TGG | - | chr4.1:27472782-27472801 | None:intergenic | 25.0% |
| !! | TTCTTTGAGAAACTTTACAT+GGG | + | chr4.1:27471153-27471172 | MS.gene006510:CDS | 25.0% |
| !! | TTTCTTTGAGAAACTTTACA+TGG | + | chr4.1:27471152-27471171 | MS.gene006510:CDS | 25.0% |
| !!! | AGAGTTTAACTTTAAAACAG+AGG | + | chr4.1:27472207-27472226 | MS.gene006510:intron | 25.0% |
| !!! | TAGAAATAGTCCTTTTTTGA+AGG | + | chr4.1:27473595-27473614 | MS.gene006510:CDS | 25.0% |
| AAAAAATGGGGAATTAACTG+TGG | + | chr4.1:27472156-27472175 | MS.gene006510:intron | 30.0% | |
| AAGAAGAAGAAGAAGAATCA+CGG | + | chr4.1:27470941-27470960 | MS.gene006510:CDS | 30.0% | |
| ACTAATTGACCACTTTACAA+TGG | + | chr4.1:27472180-27472199 | MS.gene006510:intron | 30.0% | |
| AGAAAAAAGTTTGTGATTGG+TGG | + | chr4.1:27471671-27471690 | MS.gene006510:intron | 30.0% | |
| ATAAGAGTTGTGATCTTCTA+AGG | + | chr4.1:27473735-27473754 | MS.gene006510:CDS | 30.0% | |
| GAAGAAGAGATTAAACGTTT+AGG | + | chr4.1:27471312-27471331 | MS.gene006510:CDS | 30.0% | |
| TATCCATTCTATGTATGTCA+CGG | - | chr4.1:27473045-27473064 | None:intergenic | 30.0% | |
| TTATATAGTGATTGCATGGA+GGG | + | chr4.1:27473016-27473035 | MS.gene006510:intron | 30.0% | |
| TTGAAGGAAAATGGTGATTT+GGG | + | chr4.1:27473611-27473630 | MS.gene006510:CDS | 30.0% | |
| TTTAGTTATGTTTGTGCGTA+AGG | - | chr4.1:27472526-27472545 | None:intergenic | 30.0% | |
| TTTATATAGTGATTGCATGG+AGG | + | chr4.1:27473015-27473034 | MS.gene006510:intron | 30.0% | |
| TTTGAAGGAAAATGGTGATT+TGG | + | chr4.1:27473610-27473629 | MS.gene006510:CDS | 30.0% | |
| ! | AATTGTTTCTTCTCTCTCTT+TGG | + | chr4.1:27471461-27471480 | MS.gene006510:intron | 30.0% |
| ! | ACTGACTTAGATGTATACAA+TGG | + | chr4.1:27471494-27471513 | MS.gene006510:intron | 30.0% |
| ! | CTTCATGTAGAATGTCTTTT+AGG | - | chr4.1:27473073-27473092 | None:intergenic | 30.0% |
| ! | GGAATTTGCACTTTAAAGAA+AGG | + | chr4.1:27473402-27473421 | MS.gene006510:CDS | 30.0% |
| ! | TCACCATTTTCCTTCAAAAA+AGG | - | chr4.1:27473608-27473627 | None:intergenic | 30.0% |
| !! | ATGGAGAACATTTTGGTATT+TGG | - | chr4.1:27472775-27472794 | None:intergenic | 30.0% |
| !! | CTGTTTCTACTTTGATTGAT+GGG | - | chr4.1:27473112-27473131 | None:intergenic | 30.0% |
| !! | TACTTTTGCATTTGATGGAT+GGG | + | chr4.1:27473654-27473673 | MS.gene006510:CDS | 30.0% |
| !! | TTGCTATTCTTTTGACATGT+GGG | + | chr4.1:27471609-27471628 | MS.gene006510:intron | 30.0% |
| !!! | AGTCCTTTTTTGAAGGAAAA+TGG | + | chr4.1:27473602-27473621 | MS.gene006510:CDS | 30.0% |
| !!! | TTTGCTATTCTTTTGACATG+TGG | + | chr4.1:27471608-27471627 | MS.gene006510:intron | 30.0% |
| AATCGCATTCAAAATCGCAT+TGG | + | chr4.1:27473905-27473924 | MS.gene006510:CDS | 35.0% | |
| ACAAGATGAGAATAAAGGGA+TGG | + | chr4.1:27473787-27473806 | MS.gene006510:CDS | 35.0% | |
| ACGTTTAATCTCTTCTTCGT+TGG | - | chr4.1:27471310-27471329 | None:intergenic | 35.0% | |
| ACTCTTACTCCATTGTAAAG+TGG | - | chr4.1:27472192-27472211 | None:intergenic | 35.0% | |
| AGTTTCTCAAAGAAATGTGC+AGG | - | chr4.1:27471147-27471166 | None:intergenic | 35.0% | |
| ATAATAAAAAGGTCCAAGGG+CGG | - | chr4.1:27472913-27472932 | None:intergenic | 35.0% | |
| ATGATTTCTTTGCGTAGGAT+AGG | - | chr4.1:27471039-27471058 | None:intergenic | 35.0% | |
| CCATCAATCAAAGTAGAAAC+AGG | + | chr4.1:27473110-27473129 | MS.gene006510:CDS | 35.0% | |
| GATGATGTTCACTCCTAATT+CGG | - | chr4.1:27473318-27473337 | None:intergenic | 35.0% | |
| GGAGACAAGATGAGAATAAA+GGG | + | chr4.1:27473783-27473802 | MS.gene006510:CDS | 35.0% | |
| TATATAGTGATTGCATGGAG+GGG | + | chr4.1:27473017-27473036 | MS.gene006510:intron | 35.0% | |
| TGAAGGAAAATGGTGATTTG+GGG | + | chr4.1:27473612-27473631 | MS.gene006510:CDS | 35.0% | |
| TGAGAATGAACAATAAGTGC+AGG | - | chr4.1:27473168-27473187 | None:intergenic | 35.0% | |
| TGATGTTTGATGTTGCATAG+AGG | - | chr4.1:27471203-27471222 | None:intergenic | 35.0% | |
| TGCGGAGATAGAGAAATTTA+TGG | + | chr4.1:27471737-27471756 | MS.gene006510:intron | 35.0% | |
| TGGAGACAAGATGAGAATAA+AGG | + | chr4.1:27473782-27473801 | MS.gene006510:CDS | 35.0% | |
| TTTAATCTCTTCTTCGTTGG+TGG | - | chr4.1:27471307-27471326 | None:intergenic | 35.0% | |
| ! | AAAGAAAGGTGTGAAGAACT+TGG | + | chr4.1:27473416-27473435 | MS.gene006510:CDS | 35.0% |
| ! | AATCTAAGATCTCTTCAGTG+TGG | + | chr4.1:27471244-27471263 | MS.gene006510:CDS | 35.0% |
| ! | ATTTGATGGATGGGTATCAT+GGG | + | chr4.1:27473663-27473682 | MS.gene006510:CDS | 35.0% |
| ! | GTACTTTTGCATTTGATGGA+TGG | + | chr4.1:27473653-27473672 | MS.gene006510:CDS | 35.0% |
| ! | TTCTCATTGGTTATAATCCC+CGG | - | chr4.1:27473491-27473510 | None:intergenic | 35.0% |
| !! | CCTGTTTCTACTTTGATTGA+TGG | - | chr4.1:27473113-27473132 | None:intergenic | 35.0% |
| !! | TGATGCTGATTTCTTCATCT+TGG | - | chr4.1:27473238-27473257 | None:intergenic | 35.0% |
| !!! | AAGATACATTGGCTTTTCCT+TGG | + | chr4.1:27473534-27473553 | MS.gene006510:CDS | 35.0% |
| !!! | AGAGGTACTTTTGCATTTGA+TGG | + | chr4.1:27473649-27473668 | MS.gene006510:CDS | 35.0% |
| !!! | GAAGTCGTTTTATTTCTGAG+AGG | - | chr4.1:27473205-27473224 | None:intergenic | 35.0% |
| !!! | TGACATGTGGGTTTTGTTAT+TGG | + | chr4.1:27471621-27471640 | MS.gene006510:intron | 35.0% |
| AACAACTAACGTCCCCATAA+CGG | + | chr4.1:27473352-27473371 | MS.gene006510:CDS | 40.0% | |
| AAGTGCAAATTCCCAACTCT+CGG | - | chr4.1:27473395-27473414 | None:intergenic | 40.0% | |
| AGATGATGTGCAATATCTGG+TGG | - | chr4.1:27473869-27473888 | None:intergenic | 40.0% | |
| AGCGAATGATTTCTTTGCGT+AGG | - | chr4.1:27471044-27471063 | None:intergenic | 40.0% | |
| AGTGCAGGATTGTTCTTTCT+TGG | - | chr4.1:27473153-27473172 | None:intergenic | 40.0% | |
| ATCCCATCCAGTTAGCATAA+GGG | - | chr4.1:27471272-27471291 | None:intergenic | 40.0% | |
| CGCAAAGAAATCATTCGCTA+TGG | + | chr4.1:27471045-27471064 | MS.gene006510:CDS | 40.0% | |
| GAGAAACTTTACATGGGAGA+TGG | + | chr4.1:27471159-27471178 | MS.gene006510:CDS | 40.0% | |
| GATGTATGGAGAGAAATCCA+AGG | + | chr4.1:27470976-27470995 | MS.gene006510:CDS | 40.0% | |
| GCAAGATGATGTGCAATATC+TGG | - | chr4.1:27473872-27473891 | None:intergenic | 40.0% | |
| GGAAGGTCTATTAGATCCAA+TGG | + | chr4.1:27471011-27471030 | MS.gene006510:CDS | 40.0% | |
| GGGGTGTACACATAATTTAG+AGG | + | chr4.1:27473631-27473650 | MS.gene006510:CDS | 40.0% | |
| TAGGGTACATACCTATGTCA+CGG | - | chr4.1:27471341-27471360 | None:intergenic | 40.0% | |
| TATCCCATCCAGTTAGCATA+AGG | - | chr4.1:27471273-27471292 | None:intergenic | 40.0% | |
| TTCTCATCTTGTCTCCAATG+TGG | - | chr4.1:27473779-27473798 | None:intergenic | 40.0% | |
| TTGATGTTGCATAGAGGTAG+CGG | - | chr4.1:27471197-27471216 | None:intergenic | 40.0% | |
| ! | CATTTGATGGATGGGTATCA+TGG | + | chr4.1:27473662-27473681 | MS.gene006510:CDS | 40.0% |
| ! | GATCTTCTAAGGAGTGAGTT+TGG | + | chr4.1:27473746-27473765 | MS.gene006510:CDS | 40.0% |
| AAAAAGTAAAGGTCCGCCCT+TGG | + | chr4.1:27472897-27472916 | MS.gene006510:intron | 45.0% | |
| AAATCCAAGGCGAGAACAAC+TGG | + | chr4.1:27470989-27471008 | MS.gene006510:CDS | 45.0% | |
| AATCCAAGGCGAGAACAACT+GGG | + | chr4.1:27470990-27471009 | MS.gene006510:CDS | 45.0% | |
| AGCCCTTATGCTAACTGGAT+GGG | + | chr4.1:27471267-27471286 | MS.gene006510:CDS | 45.0% | |
| ATAACGGTTTACTCGTTCGC+GGG | + | chr4.1:27473368-27473387 | MS.gene006510:CDS | 45.0% | |
| ATTGGTTATAATCCCCGGCA+CGG | - | chr4.1:27473486-27473505 | None:intergenic | 45.0% | |
| CATAACGGTTTACTCGTTCG+CGG | + | chr4.1:27473367-27473386 | MS.gene006510:CDS | 45.0% | |
| CCAACATGAGCATAACTCCA+AGG | - | chr4.1:27473554-27473573 | None:intergenic | 45.0% | |
| CCTTGGAGTTATGCTCATGT+TGG | + | chr4.1:27473551-27473570 | MS.gene006510:CDS | 45.0% | |
| CGAACGAGTAAACCGTTATG+GGG | - | chr4.1:27473367-27473386 | None:intergenic | 45.0% | |
| GAAATCAGCATCACAGTCAC+AGG | + | chr4.1:27473245-27473264 | MS.gene006510:CDS | 45.0% | |
| GCACCGTGACATACATAGAA+TGG | + | chr4.1:27473039-27473058 | MS.gene006510:CDS | 45.0% | |
| GCGAACGAGTAAACCGTTAT+GGG | - | chr4.1:27473368-27473387 | None:intergenic | 45.0% | |
| GCTTACGACATAGCCGAATT+AGG | + | chr4.1:27473302-27473321 | MS.gene006510:CDS | 45.0% | |
| GGAGTGAACATCATCGAAGA+CGG | + | chr4.1:27473323-27473342 | MS.gene006510:CDS | 45.0% | |
| TCATCTTGTCTCCAATGTGG+TGG | - | chr4.1:27473776-27473795 | None:intergenic | 45.0% | |
| TTGCGTAGGATAGGATCCAT+TGG | - | chr4.1:27471030-27471049 | None:intergenic | 45.0% | |
| ! | AAAACGATACGGCGCTGAAA+AGG | + | chr4.1:27471935-27471954 | MS.gene006510:intron | 45.0% |
| ! | GCATTGGTAGCTTCCAATCA+AGG | + | chr4.1:27473921-27473940 | MS.gene006510:CDS | 45.0% |
| !! | AGTTTGGTGTTCCACCACAT+TGG | + | chr4.1:27473762-27473781 | MS.gene006510:CDS | 45.0% |
| !! | TATGTCGTAAGCGCTGAGTA+TGG | - | chr4.1:27473294-27473313 | None:intergenic | 45.0% |
| !! | TCAAACCGATGATGGAAGGT+GGG | + | chr4.1:27473811-27473830 | MS.gene006510:CDS | 45.0% |
| !! | TGGTTCAAACCGATGATGGA+AGG | + | chr4.1:27473807-27473826 | MS.gene006510:CDS | 45.0% |
| !! | TTCAAACCGATGATGGAAGG+TGG | + | chr4.1:27473810-27473829 | MS.gene006510:CDS | 45.0% |
| ACAGTCACAGGACACAGTCT+TGG | + | chr4.1:27473257-27473276 | MS.gene006510:CDS | 50.0% | |
| CACAACCCACCTTCCATCAT+CGG | - | chr4.1:27473819-27473838 | None:intergenic | 50.0% | |
| CATCTTCCTCTTCGTGCAGT+TGG | - | chr4.1:27470903-27470922 | None:intergenic | 50.0% | |
| CGCGAACGAGTAAACCGTTA+TGG | - | chr4.1:27473369-27473388 | None:intergenic | 50.0% | |
| GAGCCCTTATGCTAACTGGA+TGG | + | chr4.1:27471266-27471285 | MS.gene006510:CDS | 50.0% | |
| GGCTTTCGTTGAGCGATGTA+TGG | + | chr4.1:27470962-27470981 | MS.gene006510:CDS | 50.0% | |
| GGGATGGTTCAAACCGATGA+TGG | + | chr4.1:27473803-27473822 | MS.gene006510:CDS | 50.0% | |
| TAACGGTTTACTCGTTCGCG+GGG | + | chr4.1:27473369-27473388 | MS.gene006510:CDS | 50.0% | |
| TGTGGAGCCCTTATGCTAAC+TGG | + | chr4.1:27471262-27471281 | MS.gene006510:CDS | 50.0% | |
| ! | GATACGGCGCTGAAAAGGAA+CGG | + | chr4.1:27471940-27471959 | MS.gene006510:intron | 50.0% |
| ! | TGCATAGAGGTAGCGGCTTA+TGG | - | chr4.1:27471190-27471209 | None:intergenic | 50.0% |
| !! | GTAAGCGCTGAGTATGGCTA+GGG | - | chr4.1:27473288-27473307 | None:intergenic | 50.0% |
| CAAGGCGAGAACAACTGGGA+AGG | + | chr4.1:27470994-27471013 | MS.gene006510:CDS | 55.0% | |
| CTTCCCAGTTGTTCTCGCCT+TGG | - | chr4.1:27470996-27471015 | None:intergenic | 55.0% | |
| GGTGGATGAGCTTCCACTAG+AGG | - | chr4.1:27473851-27473870 | None:intergenic | 55.0% | |
| GTTATAATCCCCGGCACGGT+TGG | - | chr4.1:27473482-27473501 | None:intergenic | 55.0% | |
| TGACAAGGTTCCAACCGTGC+CGG | + | chr4.1:27473469-27473488 | MS.gene006510:CDS | 55.0% | |
| ! | CGTTTAGGACGCCGTGACAT+AGG | + | chr4.1:27471327-27471346 | MS.gene006510:CDS | 55.0% |
| !! | CGTAAGCGCTGAGTATGGCT+AGG | - | chr4.1:27473289-27473308 | None:intergenic | 55.0% |
| !! | GAAGGTGGGTTGTGCCTGAA+CGG | + | chr4.1:27473825-27473844 | MS.gene006510:CDS | 55.0% |
| ACAAGGTTCCAACCGTGCCG+GGG | + | chr4.1:27473471-27473490 | MS.gene006510:CDS | 60.0% | |
| GACAAGGTTCCAACCGTGCC+GGG | + | chr4.1:27473470-27473489 | MS.gene006510:CDS | 60.0% | |
| GCTTCCACTAGAGGCCGTTC+AGG | - | chr4.1:27473842-27473861 | None:intergenic | 60.0% | |
| TGTGCCTGAACGGCCTCTAG+TGG | + | chr4.1:27473835-27473854 | MS.gene006510:CDS | 60.0% | |
| CGTTCGCGGGGCCGAGAGTT+GGG | + | chr4.1:27473381-27473400 | MS.gene006510:CDS | 70.0% | |
| TCGTTCGCGGGGCCGAGAGT+TGG | + | chr4.1:27473380-27473399 | MS.gene006510:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 27470895 | 27473952 | 27470895 | ID=MS.gene006510 |
| chr4.1 | mRNA | 27470895 | 27473952 | 27470895 | ID=MS.gene006510.t1;Parent=MS.gene006510 |
| chr4.1 | exon | 27470895 | 27471348 | 27470895 | ID=MS.gene006510.t1.exon1;Parent=MS.gene006510.t1 |
| chr4.1 | CDS | 27470895 | 27471348 | 27470895 | ID=cds.MS.gene006510.t1;Parent=MS.gene006510.t1 |
| chr4.1 | exon | 27473024 | 27473952 | 27473024 | ID=MS.gene006510.t1.exon2;Parent=MS.gene006510.t1 |
| chr4.1 | CDS | 27473024 | 27473952 | 27473024 | ID=cds.MS.gene006510.t1;Parent=MS.gene006510.t1 |
| Gene Sequence |
| Protein sequence |
