Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28990.t1 | XP_003607369.1 | 97.5 | 435 | 11 | 0 | 26 | 460 | 100 | 534 | 5.20E-258 | 899.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28990.t1 | Q9C8J6 | 70.7 | 427 | 112 | 5 | 29 | 444 | 90 | 514 | 6.5e-185 | 648.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28990.t1 | G7JRN3 | 97.5 | 435 | 11 | 0 | 26 | 460 | 100 | 534 | 3.7e-258 | 899.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene28990 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene049396 | MS.gene28990 | 0.840208 | 9.99E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene28990 | 0.850321 | 1.83E-60 | -1.69E-46 |
| MS.gene049656 | MS.gene28990 | 0.800182 | 1.62E-48 | -1.69E-46 |
| MS.gene049794 | MS.gene28990 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene28990 | 0.838914 | 2.17E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene28990 | 0.82203 | 2.95E-53 | -1.69E-46 |
| MS.gene050502 | MS.gene28990 | 0.891642 | 3.30E-74 | -1.69E-46 |
| MS.gene050593 | MS.gene28990 | 0.842357 | 2.72E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene28990 | 0.823428 | 1.39E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene28990 | 0.843616 | 1.26E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene28990 | 0.842556 | 2.41E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene28990 | 0.819469 | 1.14E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene28990 | 0.803239 | 3.83E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene28990 | 0.803248 | 3.82E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene28990 | 0.840534 | 8.21E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene28990 | 0.831696 | 1.44E-55 | -1.69E-46 |
| MS.gene051387 | MS.gene28990 | 0.81545 | 9.19E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene28990 | 0.835903 | 1.28E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene28990 | 0.856076 | 4.11E-62 | -1.69E-46 |
| MS.gene051941 | MS.gene28990 | 0.853126 | 2.94E-61 | -1.69E-46 |
| MS.gene052136 | MS.gene28990 | 0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene052318 | MS.gene28990 | 0.821629 | 3.65E-53 | -1.69E-46 |
| MS.gene052346 | MS.gene28990 | 0.991992 | 1.09E-190 | -1.69E-46 |
| MS.gene052414 | MS.gene28990 | 0.86795 | 9.38E-66 | -1.69E-46 |
| MS.gene052421 | MS.gene28990 | 0.812235 | 4.70E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene28990 | 0.843655 | 1.23E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene28990 | 0.834439 | 3.00E-56 | -1.69E-46 |
| MS.gene052505 | MS.gene28990 | 0.830341 | 3.10E-55 | -1.69E-46 |
| MS.gene052506 | MS.gene28990 | 0.817027 | 4.08E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene28990 | 0.825798 | 3.85E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene28990 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene28990 | 0.831837 | 1.33E-55 | -1.69E-46 |
| MS.gene052825 | MS.gene28990 | 0.826345 | 2.85E-54 | -1.69E-46 |
| MS.gene052966 | MS.gene28990 | 0.806298 | 8.80E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene28990 | 0.849848 | 2.49E-60 | -1.69E-46 |
| MS.gene052999 | MS.gene28990 | 0.846813 | 1.72E-59 | -1.69E-46 |
| MS.gene053169 | MS.gene28990 | 0.828587 | 8.28E-55 | -1.69E-46 |
| MS.gene053203 | MS.gene28990 | 0.816694 | 4.85E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene28990 | 0.802021 | 6.84E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene28990 | 0.801414 | 9.11E-49 | -1.69E-46 |
| MS.gene053318 | MS.gene28990 | 0.848146 | 7.38E-60 | -1.69E-46 |
| MS.gene05335 | MS.gene28990 | 0.816446 | 5.51E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene28990 | 0.864991 | 8.16E-65 | -1.69E-46 |
| MS.gene053449 | MS.gene28990 | 0.82536 | 4.89E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene28990 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene28990 | 0.867088 | 1.77E-65 | -1.69E-46 |
| MS.gene053626 | MS.gene28990 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene28990 | 0.834704 | 2.57E-56 | -1.69E-46 |
| MS.gene053912 | MS.gene28990 | 0.805401 | 1.36E-49 | -1.69E-46 |
| MS.gene053997 | MS.gene28990 | 0.820569 | 6.40E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene28990 | 0.805804 | 1.12E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene28990 | 0.800163 | 1.64E-48 | -1.69E-46 |
| MS.gene054927 | MS.gene28990 | 0.831417 | 1.69E-55 | -1.69E-46 |
| MS.gene05494 | MS.gene28990 | 0.849995 | 2.26E-60 | -1.69E-46 |
| MS.gene05505 | MS.gene28990 | 0.824983 | 6.00E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene28990 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene055289 | MS.gene28990 | 0.808964 | 2.39E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene28990 | 0.82259 | 2.18E-53 | -1.69E-46 |
| MS.gene055539 | MS.gene28990 | 0.81571 | 8.04E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene28990 | 0.828985 | 6.63E-55 | -1.69E-46 |
| MS.gene055741 | MS.gene28990 | 0.897299 | 1.61E-76 | -1.69E-46 |
| MS.gene055744 | MS.gene28990 | 0.894887 | 1.62E-75 | -1.69E-46 |
| MS.gene05589 | MS.gene28990 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene28990 | 0.879279 | 1.42E-69 | -1.69E-46 |
| MS.gene055911 | MS.gene28990 | 0.876893 | 9.72E-69 | -1.69E-46 |
| MS.gene056166 | MS.gene28990 | 0.854734 | 1.01E-61 | -1.69E-46 |
| MS.gene056346 | MS.gene28990 | 0.874927 | 4.61E-68 | -1.69E-46 |
| MS.gene056422 | MS.gene28990 | 0.804376 | 2.22E-49 | -1.69E-46 |
| MS.gene056448 | MS.gene28990 | 0.808509 | 2.99E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene28990 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene28990 | 0.850753 | 1.38E-60 | -1.69E-46 |
| MS.gene056514 | MS.gene28990 | 0.823607 | 1.26E-53 | -1.69E-46 |
| MS.gene05666 | MS.gene28990 | 0.836034 | 1.19E-56 | -1.69E-46 |
| MS.gene056877 | MS.gene28990 | 0.854698 | 1.04E-61 | -1.69E-46 |
| MS.gene056878 | MS.gene28990 | 0.804023 | 2.64E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene28990 | 0.868095 | 8.42E-66 | -1.69E-46 |
| MS.gene057076 | MS.gene28990 | 0.853518 | 2.27E-61 | -1.69E-46 |
| MS.gene057086 | MS.gene28990 | 0.822136 | 2.78E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene28990 | 0.808967 | 2.39E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene28990 | 0.818953 | 1.50E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene28990 | 0.853266 | 2.68E-61 | -1.69E-46 |
| MS.gene057856 | MS.gene28990 | 0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene28990 | 0.828398 | 9.19E-55 | -1.69E-46 |
| MS.gene058130 | MS.gene28990 | 0.82207 | 2.88E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene28990 | 0.806619 | 7.53E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene28990 | 0.832785 | 7.75E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene28990 | 0.831038 | 2.09E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene28990 | 0.822236 | 2.64E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene28990 | 0.841055 | 5.99E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene28990 | 0.830359 | 3.07E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene28990 | 0.844665 | 6.57E-59 | -1.69E-46 |
| MS.gene059023 | MS.gene28990 | 0.812938 | 3.30E-51 | -1.69E-46 |
| MS.gene059129 | MS.gene28990 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene059303 | MS.gene28990 | 0.847962 | 8.30E-60 | -1.69E-46 |
| MS.gene059368 | MS.gene28990 | 0.820677 | 6.04E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene28990 | 0.808077 | 3.70E-50 | -1.69E-46 |
| MS.gene059517 | MS.gene28990 | 0.825136 | 5.53E-54 | -1.69E-46 |
| MS.gene059667 | MS.gene28990 | 0.817068 | 3.99E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene28990 | 0.801111 | 1.05E-48 | -1.69E-46 |
| MS.gene059680 | MS.gene28990 | 0.80867 | 2.76E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene28990 | 0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene28990 | 0.871898 | 4.81E-67 | -1.69E-46 |
| MS.gene060482 | MS.gene28990 | 0.809229 | 2.10E-50 | -1.69E-46 |
| MS.gene060485 | MS.gene28990 | 0.851735 | 7.31E-61 | -1.69E-46 |
| MS.gene060593 | MS.gene28990 | -0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene060778 | MS.gene28990 | 0.815827 | 7.57E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene28990 | 0.864988 | 8.18E-65 | -1.69E-46 |
| MS.gene060837 | MS.gene28990 | 0.855207 | 7.37E-62 | -1.69E-46 |
| MS.gene06097 | MS.gene28990 | 0.829118 | 6.16E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene28990 | 0.805275 | 1.44E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene28990 | 0.840421 | 8.78E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28990 | MS.gene04829 | PPI |
| MS.gene28990 | MS.gene020322 | PPI |
| MS.gene018754 | MS.gene28990 | PPI |
| MS.gene28990 | MS.gene46312 | PPI |
| MS.gene28990 | MS.gene020321 | PPI |
| MS.gene28990 | MS.gene46313 | PPI |
| MS.gene28990 | MS.gene04832 | PPI |
| MS.gene28990 | MS.gene018755 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28990.t1 | MTR_4g077070 | 97.471 | 435 | 11 | 0 | 26 | 460 | 100 | 534 | 0.0 | 897 |
| MS.gene28990.t1 | MTR_7g096120 | 52.596 | 443 | 194 | 10 | 11 | 443 | 59 | 495 | 2.09e-167 | 481 |
| MS.gene28990.t1 | MTR_7g096140 | 52.709 | 406 | 177 | 9 | 11 | 407 | 59 | 458 | 1.13e-154 | 447 |
| MS.gene28990.t1 | MTR_2g015690 | 43.659 | 410 | 194 | 8 | 25 | 421 | 19 | 404 | 1.44e-107 | 325 |
| MS.gene28990.t1 | MTR_4g087830 | 40.758 | 422 | 209 | 10 | 25 | 436 | 3 | 393 | 1.78e-99 | 304 |
| MS.gene28990.t1 | MTR_4g087810 | 39.192 | 421 | 217 | 9 | 25 | 436 | 12 | 402 | 7.73e-97 | 297 |
| MS.gene28990.t1 | MTR_7g006400 | 45.143 | 350 | 161 | 10 | 26 | 367 | 105 | 431 | 5.38e-94 | 293 |
| MS.gene28990.t1 | MTR_4g080100 | 36.111 | 432 | 215 | 9 | 28 | 426 | 30 | 433 | 1.39e-86 | 272 |
| MS.gene28990.t1 | MTR_7g081620 | 39.949 | 393 | 186 | 9 | 30 | 387 | 73 | 450 | 2.54e-82 | 261 |
| MS.gene28990.t1 | MTR_5g013230 | 38.667 | 375 | 194 | 7 | 30 | 386 | 139 | 495 | 2.79e-82 | 264 |
| MS.gene28990.t1 | MTR_7g081645 | 39.678 | 373 | 184 | 9 | 25 | 383 | 74 | 419 | 1.59e-81 | 258 |
| MS.gene28990.t1 | MTR_1995s0010 | 51.754 | 228 | 98 | 6 | 148 | 368 | 1 | 223 | 1.19e-76 | 239 |
| MS.gene28990.t1 | MTR_4g099510 | 39.947 | 378 | 198 | 8 | 19 | 386 | 122 | 480 | 6.20e-76 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28990.t1 | AT1G51440 | 69.316 | 453 | 126 | 5 | 3 | 444 | 64 | 514 | 0.0 | 647 |
| MS.gene28990.t1 | AT2G30550 | 56.433 | 443 | 177 | 7 | 8 | 441 | 86 | 521 | 3.91e-179 | 512 |
| MS.gene28990.t1 | AT1G06800 | 56.689 | 441 | 175 | 9 | 10 | 440 | 70 | 504 | 7.38e-179 | 511 |
| MS.gene28990.t1 | AT2G30550 | 57.143 | 371 | 144 | 6 | 8 | 370 | 86 | 449 | 8.59e-150 | 435 |
| MS.gene28990.t1 | AT1G06800 | 56.911 | 369 | 145 | 7 | 10 | 369 | 70 | 433 | 1.08e-148 | 431 |
| MS.gene28990.t1 | AT1G30370 | 43.488 | 430 | 210 | 9 | 23 | 440 | 111 | 519 | 3.38e-120 | 361 |
| MS.gene28990.t1 | AT1G05800 | 46.742 | 353 | 160 | 8 | 24 | 368 | 78 | 410 | 1.92e-98 | 303 |
| MS.gene28990.t1 | AT2G31690 | 44.944 | 356 | 169 | 10 | 22 | 368 | 84 | 421 | 4.63e-95 | 295 |
| MS.gene28990.t1 | AT1G06250 | 39.753 | 405 | 208 | 7 | 30 | 421 | 9 | 390 | 2.36e-93 | 289 |
| MS.gene28990.t1 | AT4G18550 | 40.394 | 406 | 204 | 10 | 30 | 421 | 23 | 404 | 6.01e-93 | 288 |
| MS.gene28990.t1 | AT4G18550 | 40.394 | 406 | 204 | 10 | 30 | 421 | 40 | 421 | 9.64e-93 | 288 |
| MS.gene28990.t1 | AT2G42690 | 36.659 | 431 | 216 | 9 | 30 | 430 | 8 | 411 | 1.47e-86 | 271 |
| MS.gene28990.t1 | AT2G44810 | 40.260 | 385 | 180 | 11 | 24 | 383 | 84 | 443 | 3.88e-84 | 266 |
| MS.gene28990.t1 | AT2G44810 | 40.584 | 377 | 174 | 11 | 32 | 383 | 2 | 353 | 7.60e-84 | 262 |
| MS.gene28990.t1 | AT4G16820 | 40.000 | 390 | 188 | 10 | 15 | 385 | 116 | 478 | 1.84e-78 | 253 |
| MS.gene28990.t1 | AT4G18550 | 42.105 | 266 | 139 | 7 | 30 | 284 | 40 | 301 | 1.47e-63 | 208 |
| MS.gene28990.t1 | AT1G06250 | 40.134 | 299 | 148 | 5 | 131 | 421 | 1 | 276 | 7.72e-63 | 206 |
| MS.gene28990.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 3.20e-11 | 64.3 |
| MS.gene28990.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 3.64e-11 | 65.1 |
| MS.gene28990.t1 | AT5G18630 | 30.818 | 159 | 88 | 5 | 151 | 307 | 101 | 239 | 3.83e-11 | 65.1 |
| MS.gene28990.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 3.95e-11 | 64.3 |
| MS.gene28990.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 6.60e-11 | 64.3 |
| MS.gene28990.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 100 | 238 | 6.60e-11 | 64.3 |
| MS.gene28990.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 112 | 250 | 8.76e-11 | 63.9 |
| MS.gene28990.t1 | AT5G18640 | 30.818 | 159 | 88 | 5 | 151 | 307 | 112 | 250 | 8.76e-11 | 63.9 |
Find 107 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAACTGAAATTAAAT+TGG | 0.207992 | 4.2:+32630536 | MS.gene28990:CDS |
| AATTTAATATGGTTTCAAAA+AGG | 0.225064 | 4.2:+32630664 | MS.gene28990:CDS |
| TTAGATTTCTTGAAGAATTT+AGG | 0.245553 | 4.2:-32628206 | None:intergenic |
| TTGAAGGGAAATGGTGATTT+GGG | 0.250692 | 4.2:+32630579 | MS.gene28990:CDS |
| CCTGTTTCTACTTTGATTGA+TGG | 0.275271 | 4.2:-32630078 | None:intergenic |
| GCTTACGACATAGCCGAATT+AGG | 0.294321 | 4.2:+32630270 | MS.gene28990:CDS |
| AAATCCAAGGCGAGAACAAC+TGG | 0.302827 | 4.2:+32627967 | MS.gene28990:CDS |
| TTTGAAGGGAAATGGTGATT+TGG | 0.307709 | 4.2:+32630578 | MS.gene28990:CDS |
| AGTGCAGGATTGTTCTTTCT+TGG | 0.310372 | 4.2:-32630118 | None:intergenic |
| TGGAGACAAGATGAGAATAA+AGG | 0.322904 | 4.2:+32630750 | MS.gene28990:CDS |
| TGCATAGAGGTAGCGGCTTA+TGG | 0.364333 | 4.2:-32628165 | None:intergenic |
| GATGATGTTCACTCCTAATT+CGG | 0.369822 | 4.2:-32630283 | None:intergenic |
| CTTCCCAGTTGTTCTCGCCT+TGG | 0.372841 | 4.2:-32627971 | None:intergenic |
| GGCTTTCGTTGAGCGATGTA+TGG | 0.379405 | 4.2:+32627940 | MS.gene28990:CDS |
| CGCGAACGAGTAAACCGTTA+TGG | 0.379883 | 4.2:-32630334 | None:intergenic |
| CGTTCGCGGGGCCGAGAGTT+GGG | 0.383970 | 4.2:+32630349 | MS.gene28990:CDS |
| CAAATCACGTGGTCCTTGAT+TGG | 0.386663 | 4.2:-32630902 | None:intergenic |
| ATAAGAGTTGTGATCTTCTA+AGG | 0.392001 | 4.2:+32630703 | MS.gene28990:CDS |
| TGTGGAGCCCTTATGCTAAC+TGG | 0.405947 | 4.2:+32628240 | MS.gene28990:CDS |
| TTGAAACTGAAATTTCTCAT+TGG | 0.419763 | 4.2:-32630469 | None:intergenic |
| TCGTTCGCGGGGCCGAGAGT+TGG | 0.421350 | 4.2:+32630348 | MS.gene28990:CDS |
| GGAATTTGCACTTTAAAGAA+AGG | 0.421543 | 4.2:+32630370 | MS.gene28990:CDS |
| GCAAGATGATGTGCAATATC+TGG | 0.423197 | 4.2:-32630837 | None:intergenic |
| CATCTTCCTCTTCGTGCAGT+TGG | 0.426552 | 4.2:-32627878 | None:intergenic |
| TTCTCATTGGTTATAATCCC+CGG | 0.428050 | 4.2:-32630456 | None:intergenic |
| GGAGACAAGATGAGAATAAA+GGG | 0.429109 | 4.2:+32630751 | MS.gene28990:CDS |
| GACAAGGTTCCAACCGTGCC+GGG | 0.432120 | 4.2:+32630438 | MS.gene28990:CDS |
| GCTTCCACTAGAGGCCGTTC+AGG | 0.434299 | 4.2:-32630807 | None:intergenic |
| GAAGAAGAGATTAAACGTTT+AGG | 0.434314 | 4.2:+32628290 | MS.gene28990:CDS |
| TGATGCTGATTTCTTCATCT+TGG | 0.436804 | 4.2:-32630203 | None:intergenic |
| CCTTGGAGTTATGCTCATGT+TGG | 0.439341 | 4.2:+32630519 | MS.gene28990:CDS |
| CCATCAATCAAAGTAGAAAC+AGG | 0.440706 | 4.2:+32630078 | MS.gene28990:CDS |
| CTGTTTCTACTTTGATTGAT+GGG | 0.442102 | 4.2:-32630077 | None:intergenic |
| TATCCCATCCAGTTAGCATA+AGG | 0.442825 | 4.2:-32628248 | None:intergenic |
| TTTAATCTCTTCTTCGTTGG+TGG | 0.443070 | 4.2:-32628282 | None:intergenic |
| GATCTTCTAAGGAGTGAGTT+TGG | 0.443725 | 4.2:+32630714 | MS.gene28990:CDS |
| GCGAACGAGTAAACCGTTAT+GGG | 0.455006 | 4.2:-32630333 | None:intergenic |
| GTTATAATCCCCGGCACGGT+TGG | 0.455037 | 4.2:-32630447 | None:intergenic |
| ATAACGGTTTACTCGTTCGC+GGG | 0.455590 | 4.2:+32630336 | MS.gene28990:CDS |
| CGTTTAGGACGCCGTGACAT+AGG | 0.461230 | 4.2:+32628305 | MS.gene28990:CDS |
| CATTTGATGGATGGGTATCA+TGG | 0.469639 | 4.2:+32630630 | MS.gene28990:CDS |
| AAAGAAAGGTGTGAAGAACT+TGG | 0.475583 | 4.2:+32630384 | MS.gene28990:CDS |
| GGGGTGTACACATAATTTAG+AGG | 0.480604 | 4.2:+32630599 | MS.gene28990:CDS |
| TATGTCGTAAGCGCTGAGTA+TGG | 0.482762 | 4.2:-32630259 | None:intergenic |
| CTCTTTATATAGTGATTGCA+TGG | 0.493736 | 4.2:+32629980 | MS.gene28990:intron |
| ATGATTTCTTTGCGTAGGAT+AGG | 0.496867 | 4.2:-32628014 | None:intergenic |
| TTATATAGTGATTGCATGGA+GGG | 0.497247 | 4.2:+32629984 | MS.gene28990:intron |
| GGGATGGTTCAAACCGATGA+TGG | 0.497989 | 4.2:+32630771 | MS.gene28990:CDS |
| ACGTTTAATCTCTTCTTCGT+TGG | 0.501727 | 4.2:-32628285 | None:intergenic |
| CACAACCCACCTTCCATCAT+CGG | 0.503475 | 4.2:-32630784 | None:intergenic |
| GAGAAACTTTACATGGGAGA+TGG | 0.511262 | 4.2:+32628137 | MS.gene28990:CDS |
| GATCAAAACTCAAAATATTG+TGG | 0.513294 | 4.2:+32628083 | MS.gene28990:CDS |
| TGACAAGGTTCCAACCGTGC+CGG | 0.514175 | 4.2:+32630437 | MS.gene28990:CDS |
| TTTCTTTGAGAAACTTTACA+TGG | 0.516670 | 4.2:+32628130 | MS.gene28990:CDS |
| TTGCGTAGGATAGGATCCAT+TGG | 0.518415 | 4.2:-32628005 | None:intergenic |
| GCATTGGTAGCTTCCAATCA+AGG | 0.520891 | 4.2:+32630889 | MS.gene28990:CDS |
| TGTGCCTGAACGGCCTCTAG+TGG | 0.525389 | 4.2:+32630803 | MS.gene28990:CDS |
| AAGTGCAAATTCCCAACTCT+CGG | 0.525702 | 4.2:-32630360 | None:intergenic |
| TGAGAATGAACAATAAGTGC+AGG | 0.528179 | 4.2:-32630133 | None:intergenic |
| GCACCGTGACATACATAGAA+TGG | 0.533607 | 4.2:+32630007 | MS.gene28990:CDS |
| GGAAGGTCTATTAGATCCAA+TGG | 0.534597 | 4.2:+32627989 | MS.gene28990:CDS |
| ATCCCATCCAGTTAGCATAA+GGG | 0.536253 | 4.2:-32628247 | None:intergenic |
| GAGCCCTTATGCTAACTGGA+TGG | 0.539926 | 4.2:+32628244 | MS.gene28990:CDS |
| CGTAAGCGCTGAGTATGGCT+AGG | 0.545238 | 4.2:-32630254 | None:intergenic |
| CGCAAAGAAATCATTCGCTA+TGG | 0.545659 | 4.2:+32628023 | MS.gene28990:CDS |
| AGTTTCTCAAAGAAATGTGC+AGG | 0.546930 | 4.2:-32628122 | None:intergenic |
| AAAGTATATAGAAGATACAT+TGG | 0.550653 | 4.2:+32630491 | MS.gene28990:CDS |
| TTGATGTTGCATAGAGGTAG+CGG | 0.552703 | 4.2:-32628172 | None:intergenic |
| ATTTCTTGAAGAATTTAGGA+AGG | 0.554007 | 4.2:-32628202 | None:intergenic |
| GAAATCAGCATCACAGTCAC+AGG | 0.555372 | 4.2:+32630213 | MS.gene28990:CDS |
| ACAGTCACAGGACACAGTCT+TGG | 0.567549 | 4.2:+32630225 | MS.gene28990:CDS |
| AACAACTAACGTCCCCATAA+CGG | 0.568948 | 4.2:+32630320 | MS.gene28990:CDS |
| TTCTCATCTTGTCTCCAATG+TGG | 0.570582 | 4.2:-32630744 | None:intergenic |
| AGTTTGGTGTTCCACCACAT+TGG | 0.571065 | 4.2:+32630730 | MS.gene28990:CDS |
| AATCGCATTCAAAATCGCAT+TGG | 0.579406 | 4.2:+32630873 | MS.gene28990:CDS |
| CATAACGGTTTACTCGTTCG+CGG | 0.581601 | 4.2:+32630335 | MS.gene28990:CDS |
| GAAGGTGGGTTGTGCCTGAA+CGG | 0.583884 | 4.2:+32630793 | MS.gene28990:CDS |
| AGCCCTTATGCTAACTGGAT+GGG | 0.586402 | 4.2:+32628245 | MS.gene28990:CDS |
| TCATCTTGTCTCCAATGTGG+TGG | 0.589893 | 4.2:-32630741 | None:intergenic |
| TGAAGGGAAATGGTGATTTG+GGG | 0.591270 | 4.2:+32630580 | MS.gene28990:CDS |
| GGTGGATGAGCTTCCACTAG+AGG | 0.592564 | 4.2:-32630816 | None:intergenic |
| TGGTTCAAACCGATGATGGA+AGG | 0.596118 | 4.2:+32630775 | MS.gene28990:CDS |
| TTCAAACCGATGATGGAAGG+TGG | 0.599261 | 4.2:+32630778 | MS.gene28990:CDS |
| ATTGGTTATAATCCCCGGCA+CGG | 0.605638 | 4.2:-32630451 | None:intergenic |
| AGCGAATGATTTCTTTGCGT+AGG | 0.609122 | 4.2:-32628019 | None:intergenic |
| TATATAGTGATTGCATGGAG+GGG | 0.612515 | 4.2:+32629985 | MS.gene28990:intron |
| TATCCATTCTATGTATGTCA+CGG | 0.618336 | 4.2:-32630010 | None:intergenic |
| ACAAGGTTCCAACCGTGCCG+GGG | 0.622173 | 4.2:+32630439 | MS.gene28990:CDS |
| TTTATATAGTGATTGCATGG+AGG | 0.625462 | 4.2:+32629983 | MS.gene28990:intron |
| TATGAACCAACTGCACGAAG+AGG | 0.628820 | 4.2:+32627872 | None:intergenic |
| ATTTGATGGATGGGTATCAT+GGG | 0.630818 | 4.2:+32630631 | MS.gene28990:CDS |
| TAACGGTTTACTCGTTCGCG+GGG | 0.632196 | 4.2:+32630337 | MS.gene28990:CDS |
| ACAAGATGAGAATAAAGGGA+TGG | 0.636684 | 4.2:+32630755 | MS.gene28990:CDS |
| GTAAGCGCTGAGTATGGCTA+GGG | 0.639224 | 4.2:-32630253 | None:intergenic |
| AATCCAAGGCGAGAACAACT+GGG | 0.639358 | 4.2:+32627968 | MS.gene28990:CDS |
| TTCTTTGAGAAACTTTACAT+GGG | 0.642102 | 4.2:+32628131 | MS.gene28990:CDS |
| GGAGTGAACATCATCGAAGA+CGG | 0.642474 | 4.2:+32630291 | MS.gene28990:CDS |
| TGATGTTTGATGTTGCATAG+AGG | 0.642978 | 4.2:-32628178 | None:intergenic |
| CAAGGCGAGAACAACTGGGA+AGG | 0.645261 | 4.2:+32627972 | MS.gene28990:CDS |
| CGAACGAGTAAACCGTTATG+GGG | 0.657882 | 4.2:-32630332 | None:intergenic |
| CCAACATGAGCATAACTCCA+AGG | 0.660120 | 4.2:-32630519 | None:intergenic |
| TAGGGTACATACCTATGTCA+CGG | 0.660260 | 4.2:-32628316 | None:intergenic |
| AATCTAAGATCTCTTCAGTG+TGG | 0.668543 | 4.2:+32628222 | MS.gene28990:CDS |
| GATGTATGGAGAGAAATCCA+AGG | 0.668805 | 4.2:+32627954 | MS.gene28990:CDS |
| TCAAACCGATGATGGAAGGT+GGG | 0.670175 | 4.2:+32630779 | MS.gene28990:CDS |
| AGATGATGTGCAATATCTGG+TGG | 0.691855 | 4.2:-32630834 | None:intergenic |
| AATACATAATATTCATGACA+AGG | 0.698783 | 4.2:+32630422 | MS.gene28990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAATAAAA+AGG | + | chr4.2:32628887-32628906 | MS.gene28990:intron | 0.0% |
| !! | AAAAAATAATAATAATAAAA+AGG | - | chr4.2:32629892-32629911 | None:intergenic | 0.0% |
| !! | GAAAGATAAAAAATTTAATA+TGG | + | chr4.2:32630653-32630672 | MS.gene28990:CDS | 10.0% |
| !!! | ATGTTTTTAAAAGAAATAAT+TGG | + | chr4.2:32629665-32629684 | MS.gene28990:intron | 10.0% |
| !!! | TTATTACTTTTGATTTTTTA+GGG | - | chr4.2:32628807-32628826 | None:intergenic | 10.0% |
| !!! | TTTATTACTTTTGATTTTTT+AGG | - | chr4.2:32628808-32628827 | None:intergenic | 10.0% |
| !! | AATTTAATATGGTTTCAAAA+AGG | + | chr4.2:32630664-32630683 | MS.gene28990:CDS | 15.0% |
| !! | ACTAAAAAAAGAAAAAAGAA+AGG | + | chr4.2:32629509-32629528 | MS.gene28990:intron | 15.0% |
| !! | ATTTAATATGGTTTCAAAAA+GGG | + | chr4.2:32630665-32630684 | MS.gene28990:CDS | 15.0% |
| !! | ATTTCAATTATATATTGAGA+TGG | - | chr4.2:32629604-32629623 | None:intergenic | 15.0% |
| !! | CTAAAAAAAGAAAAAAGAAA+GGG | + | chr4.2:32629510-32629529 | MS.gene28990:intron | 15.0% |
| !! | TAATGAAGGTAAAAAAAAAT+AGG | - | chr4.2:32629024-32629043 | None:intergenic | 15.0% |
| !! | TCAAAAGTAATAAAATTCAT+TGG | + | chr4.2:32628814-32628833 | MS.gene28990:intron | 15.0% |
| !! | TCAGAAACAATATAAATATA+TGG | - | chr4.2:32628413-32628432 | None:intergenic | 15.0% |
| !!! | AAAAAACTAGTATTTTTCTA+TGG | - | chr4.2:32629805-32629824 | None:intergenic | 15.0% |
| !!! | AATATAAATATATGGTCTTT+TGG | - | chr4.2:32628405-32628424 | None:intergenic | 15.0% |
| !!! | AATATTAACAACTTTTAATG+CGG | + | chr4.2:32628697-32628716 | MS.gene28990:intron | 15.0% |
| !!! | AATCAAACAGTTTTAAAAAA+TGG | + | chr4.2:32629111-32629130 | MS.gene28990:intron | 15.0% |
| !!! | ACTTATCTTTATTTTATAAG+TGG | - | chr4.2:32628359-32628378 | None:intergenic | 15.0% |
| !!! | ATATAAATATATGGTCTTTT+GGG | - | chr4.2:32628404-32628423 | None:intergenic | 15.0% |
| !!! | ATCAAACAGTTTTAAAAAAT+GGG | + | chr4.2:32629112-32629131 | MS.gene28990:intron | 15.0% |
| !!! | GTAATTAAATTAAGAGTATA+GGG | - | chr4.2:32628337-32628356 | None:intergenic | 15.0% |
| !!! | TATATTCTCAATCTTTTATA+TGG | + | chr4.2:32629546-32629565 | MS.gene28990:intron | 15.0% |
| !!! | TATTACTTTTGATTTTTTAG+GGG | - | chr4.2:32628806-32628825 | None:intergenic | 15.0% |
| !!! | TTTTTTGAGATAAAATTCAT+TGG | + | chr4.2:32628846-32628865 | MS.gene28990:intron | 15.0% |
| !! | AAAGTATATAGAAGATACAT+TGG | + | chr4.2:32630491-32630510 | MS.gene28990:CDS | 20.0% |
| !! | AACCACTATAATTATTGTTA+TGG | - | chr4.2:32629764-32629783 | None:intergenic | 20.0% |
| !! | AATAATAATAAAAAGGTCCA+AGG | - | chr4.2:32629885-32629904 | None:intergenic | 20.0% |
| !! | AATACATAATATTCATGACA+AGG | + | chr4.2:32630422-32630441 | MS.gene28990:CDS | 20.0% |
| !! | AGAGAGAAAATCATTATTTA+TGG | - | chr4.2:32629374-32629393 | None:intergenic | 20.0% |
| !! | AGAGATTCGTAAATTAAAAA+TGG | - | chr4.2:32629086-32629105 | None:intergenic | 20.0% |
| !! | ATAATAATAAAAAGGTCCAA+GGG | - | chr4.2:32629884-32629903 | None:intergenic | 20.0% |
| !! | ATTGTTCTTCAAAAAAGTAA+AGG | + | chr4.2:32629854-32629873 | MS.gene28990:intron | 20.0% |
| !! | TTAAAAGAAATAATTGGTGA+CGG | + | chr4.2:32629671-32629690 | MS.gene28990:intron | 20.0% |
| !! | TTAGATTTCTTGAAGAATTT+AGG | - | chr4.2:32628209-32628228 | None:intergenic | 20.0% |
| !!! | AAAACACTTAATTTTTCAAG+TGG | - | chr4.2:32629311-32629330 | None:intergenic | 20.0% |
| !!! | GGTAATTAAATTAAGAGTAT+AGG | - | chr4.2:32628338-32628357 | None:intergenic | 20.0% |
| !!! | TCAAACAGTTTTAAAAAATG+GGG | + | chr4.2:32629113-32629132 | MS.gene28990:intron | 20.0% |
| !!! | TTTTCGATTTACAATAATGA+AGG | - | chr4.2:32629038-32629057 | None:intergenic | 20.0% |
| ! | ATTTCTTGAAGAATTTAGGA+AGG | - | chr4.2:32628205-32628224 | None:intergenic | 25.0% |
| ! | CTCCATAACAATAATTATAG+TGG | + | chr4.2:32629759-32629778 | MS.gene28990:intron | 25.0% |
| ! | CTTGAACTAGTAATCTATTA+AGG | + | chr4.2:32629204-32629223 | MS.gene28990:intron | 25.0% |
| ! | GAAAGAAAAAAGTTTGTGAT+TGG | + | chr4.2:32628646-32628665 | MS.gene28990:intron | 25.0% |
| ! | GATCAAAACTCAAAATATTG+TGG | + | chr4.2:32628083-32628102 | MS.gene28990:CDS | 25.0% |
| ! | TAAAAAGGCTTAAAACGATA+CGG | + | chr4.2:32628902-32628921 | MS.gene28990:intron | 25.0% |
| ! | TATTGGCAAAAAAAACATGT+GGG | + | chr4.2:32628616-32628635 | MS.gene28990:intron | 25.0% |
| ! | TCAATTATATATTGAGATGG+TGG | - | chr4.2:32629601-32629620 | None:intergenic | 25.0% |
| ! | TGTTGGAACTGAAATTAAAT+TGG | + | chr4.2:32630536-32630555 | MS.gene28990:CDS | 25.0% |
| ! | TTATTGGCAAAAAAAACATG+TGG | + | chr4.2:32628615-32628634 | MS.gene28990:intron | 25.0% |
| ! | TTGAAACTGAAATTTCTCAT+TGG | - | chr4.2:32630472-32630491 | None:intergenic | 25.0% |
| !! | TATTGTTATGGAGAACATTT+TGG | - | chr4.2:32629752-32629771 | None:intergenic | 25.0% |
| !! | TTCTTTGAGAAACTTTACAT+GGG | + | chr4.2:32628131-32628150 | MS.gene28990:CDS | 25.0% |
| !! | TTTCTTTGAGAAACTTTACA+TGG | + | chr4.2:32628130-32628149 | MS.gene28990:CDS | 25.0% |
| !!! | AGAAATAGTCCTTTTTTGAA+GGG | + | chr4.2:32630564-32630583 | MS.gene28990:CDS | 25.0% |
| !!! | AGAGTTTAACTTTAAAACAG+AGG | + | chr4.2:32629176-32629195 | MS.gene28990:intron | 25.0% |
| !!! | TAGAAATAGTCCTTTTTTGA+AGG | + | chr4.2:32630563-32630582 | MS.gene28990:CDS | 25.0% |
| AAAAAATGGGGAATTAACTG+TGG | + | chr4.2:32629125-32629144 | MS.gene28990:intron | 30.0% | |
| AAGAAGAAGAAGAAGAATCA+CGG | + | chr4.2:32627919-32627938 | MS.gene28990:CDS | 30.0% | |
| ACTAATTGACCACTTTACAA+TGG | + | chr4.2:32629149-32629168 | MS.gene28990:intron | 30.0% | |
| AGAAAAAAGTTTGTGATTGG+TGG | + | chr4.2:32628649-32628668 | MS.gene28990:intron | 30.0% | |
| ATAAGAGTTGTGATCTTCTA+AGG | + | chr4.2:32630703-32630722 | MS.gene28990:CDS | 30.0% | |
| CTCTTTATATAGTGATTGCA+TGG | + | chr4.2:32629980-32629999 | MS.gene28990:intron | 30.0% | |
| GAAGAAGAGATTAAACGTTT+AGG | + | chr4.2:32628290-32628309 | MS.gene28990:CDS | 30.0% | |
| TATCCATTCTATGTATGTCA+CGG | - | chr4.2:32630013-32630032 | None:intergenic | 30.0% | |
| TTATATAGTGATTGCATGGA+GGG | + | chr4.2:32629984-32630003 | MS.gene28990:intron | 30.0% | |
| TTTAGTTATGTTTGTGCGTA+AGG | - | chr4.2:32629495-32629514 | None:intergenic | 30.0% | |
| TTTATATAGTGATTGCATGG+AGG | + | chr4.2:32629983-32630002 | MS.gene28990:intron | 30.0% | |
| ! | AATTGTTTCTTCTCTCTCTT+TGG | + | chr4.2:32628439-32628458 | MS.gene28990:intron | 30.0% |
| ! | ACTGACTTAGATGTATACAA+TGG | + | chr4.2:32628472-32628491 | MS.gene28990:intron | 30.0% |
| ! | CTTCATGTAGAATGTCTTTT+AGG | - | chr4.2:32630041-32630060 | None:intergenic | 30.0% |
| ! | GGAATTTGCACTTTAAAGAA+AGG | + | chr4.2:32630370-32630389 | MS.gene28990:CDS | 30.0% |
| !! | ATGGAGAACATTTTGGTATT+TGG | - | chr4.2:32629745-32629764 | None:intergenic | 30.0% |
| !! | CTGTTTCTACTTTGATTGAT+GGG | - | chr4.2:32630080-32630099 | None:intergenic | 30.0% |
| !! | TACTTTTGCATTTGATGGAT+GGG | + | chr4.2:32630622-32630641 | MS.gene28990:CDS | 30.0% |
| !! | TTGCTATTCTTTTGACATGT+GGG | + | chr4.2:32628587-32628606 | MS.gene28990:intron | 30.0% |
| !!! | TTTGCTATTCTTTTGACATG+TGG | + | chr4.2:32628586-32628605 | MS.gene28990:intron | 30.0% |
| AATCGCATTCAAAATCGCAT+TGG | + | chr4.2:32630873-32630892 | MS.gene28990:CDS | 35.0% | |
| ACAAGATGAGAATAAAGGGA+TGG | + | chr4.2:32630755-32630774 | MS.gene28990:CDS | 35.0% | |
| ACGTTTAATCTCTTCTTCGT+TGG | - | chr4.2:32628288-32628307 | None:intergenic | 35.0% | |
| ACTCTTACTCCATTGTAAAG+TGG | - | chr4.2:32629161-32629180 | None:intergenic | 35.0% | |
| AGTTTCTCAAAGAAATGTGC+AGG | - | chr4.2:32628125-32628144 | None:intergenic | 35.0% | |
| ATAATAAAAAGGTCCAAGGG+CGG | - | chr4.2:32629881-32629900 | None:intergenic | 35.0% | |
| ATGATTTCTTTGCGTAGGAT+AGG | - | chr4.2:32628017-32628036 | None:intergenic | 35.0% | |
| CCATCAATCAAAGTAGAAAC+AGG | + | chr4.2:32630078-32630097 | MS.gene28990:CDS | 35.0% | |
| GATGATGTTCACTCCTAATT+CGG | - | chr4.2:32630286-32630305 | None:intergenic | 35.0% | |
| GGAGACAAGATGAGAATAAA+GGG | + | chr4.2:32630751-32630770 | MS.gene28990:CDS | 35.0% | |
| TATATAGTGATTGCATGGAG+GGG | + | chr4.2:32629985-32630004 | MS.gene28990:intron | 35.0% | |
| TCACCATTTCCCTTCAAAAA+AGG | - | chr4.2:32630576-32630595 | None:intergenic | 35.0% | |
| TGAGAATGAACAATAAGTGC+AGG | - | chr4.2:32630136-32630155 | None:intergenic | 35.0% | |
| TGATGTTTGATGTTGCATAG+AGG | - | chr4.2:32628181-32628200 | None:intergenic | 35.0% | |
| TGCGGAGATAGAGAAATTTA+TGG | + | chr4.2:32628715-32628734 | MS.gene28990:intron | 35.0% | |
| TGGAGACAAGATGAGAATAA+AGG | + | chr4.2:32630750-32630769 | MS.gene28990:CDS | 35.0% | |
| TTGAAGGGAAATGGTGATTT+GGG | + | chr4.2:32630579-32630598 | MS.gene28990:CDS | 35.0% | |
| TTTAATCTCTTCTTCGTTGG+TGG | - | chr4.2:32628285-32628304 | None:intergenic | 35.0% | |
| TTTGAAGGGAAATGGTGATT+TGG | + | chr4.2:32630578-32630597 | MS.gene28990:CDS | 35.0% | |
| ! | AAAGAAAGGTGTGAAGAACT+TGG | + | chr4.2:32630384-32630403 | MS.gene28990:CDS | 35.0% |
| ! | AATCTAAGATCTCTTCAGTG+TGG | + | chr4.2:32628222-32628241 | MS.gene28990:CDS | 35.0% |
| ! | ATTTGATGGATGGGTATCAT+GGG | + | chr4.2:32630631-32630650 | MS.gene28990:CDS | 35.0% |
| ! | GTACTTTTGCATTTGATGGA+TGG | + | chr4.2:32630621-32630640 | MS.gene28990:CDS | 35.0% |
| ! | TTCTCATTGGTTATAATCCC+CGG | - | chr4.2:32630459-32630478 | None:intergenic | 35.0% |
| !! | CCTGTTTCTACTTTGATTGA+TGG | - | chr4.2:32630081-32630100 | None:intergenic | 35.0% |
| !! | TGATGCTGATTTCTTCATCT+TGG | - | chr4.2:32630206-32630225 | None:intergenic | 35.0% |
| !!! | AAGATACATTGGCTTTTCCT+TGG | + | chr4.2:32630502-32630521 | MS.gene28990:CDS | 35.0% |
| !!! | AGAGGTACTTTTGCATTTGA+TGG | + | chr4.2:32630617-32630636 | MS.gene28990:CDS | 35.0% |
| !!! | AGTCCTTTTTTGAAGGGAAA+TGG | + | chr4.2:32630570-32630589 | MS.gene28990:CDS | 35.0% |
| !!! | GAAGTCGTTTTATTTCTGAG+AGG | - | chr4.2:32630173-32630192 | None:intergenic | 35.0% |
| !!! | TGACATGTGGGTTTTGTTAT+TGG | + | chr4.2:32628599-32628618 | MS.gene28990:intron | 35.0% |
| AACAACTAACGTCCCCATAA+CGG | + | chr4.2:32630320-32630339 | MS.gene28990:CDS | 40.0% | |
| AAGTGCAAATTCCCAACTCT+CGG | - | chr4.2:32630363-32630382 | None:intergenic | 40.0% | |
| AGATGATGTGCAATATCTGG+TGG | - | chr4.2:32630837-32630856 | None:intergenic | 40.0% | |
| AGCGAATGATTTCTTTGCGT+AGG | - | chr4.2:32628022-32628041 | None:intergenic | 40.0% | |
| AGTGCAGGATTGTTCTTTCT+TGG | - | chr4.2:32630121-32630140 | None:intergenic | 40.0% | |
| ATCCCATCCAGTTAGCATAA+GGG | - | chr4.2:32628250-32628269 | None:intergenic | 40.0% | |
| CGCAAAGAAATCATTCGCTA+TGG | + | chr4.2:32628023-32628042 | MS.gene28990:CDS | 40.0% | |
| GAGAAACTTTACATGGGAGA+TGG | + | chr4.2:32628137-32628156 | MS.gene28990:CDS | 40.0% | |
| GATGTATGGAGAGAAATCCA+AGG | + | chr4.2:32627954-32627973 | MS.gene28990:CDS | 40.0% | |
| GCAAGATGATGTGCAATATC+TGG | - | chr4.2:32630840-32630859 | None:intergenic | 40.0% | |
| GGAAGGTCTATTAGATCCAA+TGG | + | chr4.2:32627989-32628008 | MS.gene28990:CDS | 40.0% | |
| GGGGTGTACACATAATTTAG+AGG | + | chr4.2:32630599-32630618 | MS.gene28990:CDS | 40.0% | |
| TAGGGTACATACCTATGTCA+CGG | - | chr4.2:32628319-32628338 | None:intergenic | 40.0% | |
| TATCCCATCCAGTTAGCATA+AGG | - | chr4.2:32628251-32628270 | None:intergenic | 40.0% | |
| TGAAGGGAAATGGTGATTTG+GGG | + | chr4.2:32630580-32630599 | MS.gene28990:CDS | 40.0% | |
| TTCTCATCTTGTCTCCAATG+TGG | - | chr4.2:32630747-32630766 | None:intergenic | 40.0% | |
| TTGATGTTGCATAGAGGTAG+CGG | - | chr4.2:32628175-32628194 | None:intergenic | 40.0% | |
| ! | CATTTGATGGATGGGTATCA+TGG | + | chr4.2:32630630-32630649 | MS.gene28990:CDS | 40.0% |
| ! | GATCTTCTAAGGAGTGAGTT+TGG | + | chr4.2:32630714-32630733 | MS.gene28990:CDS | 40.0% |
| AAAAAGTAAAGGTCCGCCCT+TGG | + | chr4.2:32629865-32629884 | MS.gene28990:intron | 45.0% | |
| AAATCCAAGGCGAGAACAAC+TGG | + | chr4.2:32627967-32627986 | MS.gene28990:CDS | 45.0% | |
| AATCCAAGGCGAGAACAACT+GGG | + | chr4.2:32627968-32627987 | MS.gene28990:CDS | 45.0% | |
| AGCCCTTATGCTAACTGGAT+GGG | + | chr4.2:32628245-32628264 | MS.gene28990:CDS | 45.0% | |
| ATAACGGTTTACTCGTTCGC+GGG | + | chr4.2:32630336-32630355 | MS.gene28990:CDS | 45.0% | |
| ATTGGTTATAATCCCCGGCA+CGG | - | chr4.2:32630454-32630473 | None:intergenic | 45.0% | |
| CATAACGGTTTACTCGTTCG+CGG | + | chr4.2:32630335-32630354 | MS.gene28990:CDS | 45.0% | |
| CCAACATGAGCATAACTCCA+AGG | - | chr4.2:32630522-32630541 | None:intergenic | 45.0% | |
| CCTTGGAGTTATGCTCATGT+TGG | + | chr4.2:32630519-32630538 | MS.gene28990:CDS | 45.0% | |
| CGAACGAGTAAACCGTTATG+GGG | - | chr4.2:32630335-32630354 | None:intergenic | 45.0% | |
| GAAATCAGCATCACAGTCAC+AGG | + | chr4.2:32630213-32630232 | MS.gene28990:CDS | 45.0% | |
| GCACCGTGACATACATAGAA+TGG | + | chr4.2:32630007-32630026 | MS.gene28990:CDS | 45.0% | |
| GCGAACGAGTAAACCGTTAT+GGG | - | chr4.2:32630336-32630355 | None:intergenic | 45.0% | |
| GCTTACGACATAGCCGAATT+AGG | + | chr4.2:32630270-32630289 | MS.gene28990:CDS | 45.0% | |
| GGAGTGAACATCATCGAAGA+CGG | + | chr4.2:32630291-32630310 | MS.gene28990:CDS | 45.0% | |
| TCATCTTGTCTCCAATGTGG+TGG | - | chr4.2:32630744-32630763 | None:intergenic | 45.0% | |
| TTGCGTAGGATAGGATCCAT+TGG | - | chr4.2:32628008-32628027 | None:intergenic | 45.0% | |
| ! | AAAACGATACGGCGCTGAAA+AGG | + | chr4.2:32628913-32628932 | MS.gene28990:intron | 45.0% |
| ! | GCATTGGTAGCTTCCAATCA+AGG | + | chr4.2:32630889-32630908 | MS.gene28990:CDS | 45.0% |
| !! | AGTTTGGTGTTCCACCACAT+TGG | + | chr4.2:32630730-32630749 | MS.gene28990:CDS | 45.0% |
| !! | TATGTCGTAAGCGCTGAGTA+TGG | - | chr4.2:32630262-32630281 | None:intergenic | 45.0% |
| !! | TCAAACCGATGATGGAAGGT+GGG | + | chr4.2:32630779-32630798 | MS.gene28990:CDS | 45.0% |
| !! | TGGTTCAAACCGATGATGGA+AGG | + | chr4.2:32630775-32630794 | MS.gene28990:CDS | 45.0% |
| !! | TTCAAACCGATGATGGAAGG+TGG | + | chr4.2:32630778-32630797 | MS.gene28990:CDS | 45.0% |
| ACAGTCACAGGACACAGTCT+TGG | + | chr4.2:32630225-32630244 | MS.gene28990:CDS | 50.0% | |
| CACAACCCACCTTCCATCAT+CGG | - | chr4.2:32630787-32630806 | None:intergenic | 50.0% | |
| CATCTTCCTCTTCGTGCAGT+TGG | - | chr4.2:32627881-32627900 | None:intergenic | 50.0% | |
| CGCGAACGAGTAAACCGTTA+TGG | - | chr4.2:32630337-32630356 | None:intergenic | 50.0% | |
| GAGCCCTTATGCTAACTGGA+TGG | + | chr4.2:32628244-32628263 | MS.gene28990:CDS | 50.0% | |
| GGCTTTCGTTGAGCGATGTA+TGG | + | chr4.2:32627940-32627959 | MS.gene28990:CDS | 50.0% | |
| GGGATGGTTCAAACCGATGA+TGG | + | chr4.2:32630771-32630790 | MS.gene28990:CDS | 50.0% | |
| TAACGGTTTACTCGTTCGCG+GGG | + | chr4.2:32630337-32630356 | MS.gene28990:CDS | 50.0% | |
| TGTGGAGCCCTTATGCTAAC+TGG | + | chr4.2:32628240-32628259 | MS.gene28990:CDS | 50.0% | |
| ! | GATACGGCGCTGAAAAGGAA+CGG | + | chr4.2:32628918-32628937 | MS.gene28990:intron | 50.0% |
| ! | TGCATAGAGGTAGCGGCTTA+TGG | - | chr4.2:32628168-32628187 | None:intergenic | 50.0% |
| !! | GTAAGCGCTGAGTATGGCTA+GGG | - | chr4.2:32630256-32630275 | None:intergenic | 50.0% |
| CAAGGCGAGAACAACTGGGA+AGG | + | chr4.2:32627972-32627991 | MS.gene28990:CDS | 55.0% | |
| CTTCCCAGTTGTTCTCGCCT+TGG | - | chr4.2:32627974-32627993 | None:intergenic | 55.0% | |
| GGTGGATGAGCTTCCACTAG+AGG | - | chr4.2:32630819-32630838 | None:intergenic | 55.0% | |
| GTTATAATCCCCGGCACGGT+TGG | - | chr4.2:32630450-32630469 | None:intergenic | 55.0% | |
| TGACAAGGTTCCAACCGTGC+CGG | + | chr4.2:32630437-32630456 | MS.gene28990:CDS | 55.0% | |
| ! | CGTTTAGGACGCCGTGACAT+AGG | + | chr4.2:32628305-32628324 | MS.gene28990:CDS | 55.0% |
| !! | CGTAAGCGCTGAGTATGGCT+AGG | - | chr4.2:32630257-32630276 | None:intergenic | 55.0% |
| !! | GAAGGTGGGTTGTGCCTGAA+CGG | + | chr4.2:32630793-32630812 | MS.gene28990:CDS | 55.0% |
| ACAAGGTTCCAACCGTGCCG+GGG | + | chr4.2:32630439-32630458 | MS.gene28990:CDS | 60.0% | |
| GACAAGGTTCCAACCGTGCC+GGG | + | chr4.2:32630438-32630457 | MS.gene28990:CDS | 60.0% | |
| GCTTCCACTAGAGGCCGTTC+AGG | - | chr4.2:32630810-32630829 | None:intergenic | 60.0% | |
| TGTGCCTGAACGGCCTCTAG+TGG | + | chr4.2:32630803-32630822 | MS.gene28990:CDS | 60.0% | |
| CGTTCGCGGGGCCGAGAGTT+GGG | + | chr4.2:32630349-32630368 | MS.gene28990:CDS | 70.0% | |
| TCGTTCGCGGGGCCGAGAGT+TGG | + | chr4.2:32630348-32630367 | MS.gene28990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32627873 | 32630920 | 32627873 | ID=MS.gene28990 |
| chr4.2 | mRNA | 32627873 | 32630920 | 32627873 | ID=MS.gene28990.t1;Parent=MS.gene28990 |
| chr4.2 | exon | 32627873 | 32628326 | 32627873 | ID=MS.gene28990.t1.exon1;Parent=MS.gene28990.t1 |
| chr4.2 | CDS | 32627873 | 32628326 | 32627873 | ID=cds.MS.gene28990.t1;Parent=MS.gene28990.t1 |
| chr4.2 | exon | 32629992 | 32630920 | 32629992 | ID=MS.gene28990.t1.exon2;Parent=MS.gene28990.t1 |
| chr4.2 | CDS | 32629992 | 32630920 | 32629992 | ID=cds.MS.gene28990.t1;Parent=MS.gene28990.t1 |
| Gene Sequence |
| Protein sequence |
