AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020364

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020364.t1 MTR_7g096870 97.575 536 13 0 1 536 1 536 0.0 1084
MS.gene020364.t1 MTR_7g096880 90.637 534 48 1 1 534 1 532 0.0 962
MS.gene020364.t1 MTR_1g069935 85.356 519 76 0 1 519 1 519 0.0 941
MS.gene020364.t1 MTR_3g082700 75.741 540 128 1 1 537 1 540 0.0 837
MS.gene020364.t1 MTR_1g069930 75.340 515 126 1 1 514 1 515 0.0 835
MS.gene020364.t1 MTR_1g074930 76.834 518 116 2 5 518 4 521 0.0 833
MS.gene020364.t1 MTR_1g043220 75.376 532 127 2 5 532 4 535 0.0 822
MS.gene020364.t1 MTR_1g043200 76.281 527 119 3 5 527 4 528 0.0 817
MS.gene020364.t1 MTR_1g074940 76.654 514 100 4 1 508 1 500 0.0 813
MS.gene020364.t1 MTR_1g043290 75.475 526 125 2 5 526 4 529 0.0 812
MS.gene020364.t1 MTR_1g028600 61.089 514 188 3 6 518 3 505 0.0 634
MS.gene020364.t1 MTR_5g068140 57.537 544 203 4 8 532 7 541 0.0 619
MS.gene020364.t1 MTR_4g083960 51.866 536 227 12 6 534 5 516 0.0 518
MS.gene020364.t1 MTR_3g084110 21.875 448 288 15 76 512 76 472 1.80e-13 73.2
MS.gene020364.t1 MTR_7g446340 23.340 467 293 17 76 527 104 520 3.33e-12 69.3
MS.gene020364.t1 MTR_6g007340 23.340 467 293 17 76 527 104 520 3.33e-12 69.3
MS.gene020364.t1 MTR_6g088450 25.564 399 245 12 81 463 108 470 4.93e-12 68.6
MS.gene020364.t1 MTR_1g116660 21.429 434 277 14 90 511 97 478 5.07e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020364.t1 AT2G38940 85.078 516 74 1 1 513 1 516 0.0 928
MS.gene020364.t1 AT3G54700 84.556 518 79 1 1 518 1 517 0.0 926
MS.gene020364.t1 AT3G54700 84.556 518 79 1 1 518 1 517 0.0 926
MS.gene020364.t1 AT2G32830 74.122 541 136 1 1 537 1 541 0.0 853
MS.gene020364.t1 AT5G43360 78.077 520 112 1 1 518 1 520 0.0 839
MS.gene020364.t1 AT5G43350 77.992 518 112 1 1 516 1 518 0.0 837
MS.gene020364.t1 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 808
MS.gene020364.t1 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 808
MS.gene020364.t1 AT5G43340 67.181 518 155 2 3 518 4 508 0.0 737
MS.gene020364.t1 AT1G20860 48.972 535 255 9 6 533 3 526 7.72e-174 501
MS.gene020364.t1 AT1G76430 47.858 537 251 11 5 528 3 523 1.67e-173 501
MS.gene020364.t1 AT1G20860 48.972 535 255 9 6 533 55 578 4.69e-173 501
MS.gene020364.t1 AT4G08878 68.487 238 75 0 31 268 13 250 3.50e-115 342
MS.gene020364.t1 AT4G08895 55.944 143 31 1 318 460 23 133 5.96e-47 161
MS.gene020364.t1 AT2G43330 22.748 444 260 17 90 511 93 475 2.02e-11 67.0

Find 139 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTCTTTGCAAATTT+TGG -0.031518 7.2:-13538304 MS.gene020364:CDS
CCCTTTGCTTCTTCCGGTTT+TGG 0.142326 7.2:-13539146 MS.gene020364:CDS
TATCCTTCTGGAAGAGATTT+TGG 0.150755 7.2:+13538599 None:intergenic
GCTTTCTGTGGAACACTTTC+AGG 0.150980 7.2:-13539303 MS.gene020364:CDS
CATGCAGGGTTTCGGAATTT+TGG 0.151969 7.2:-13539022 MS.gene020364:CDS
GTTGGGATGTTGTAACATTT+TGG 0.179506 7.2:-13538077 MS.gene020364:CDS
TGCATTCGGGTTCTTGTATT+TGG 0.192044 7.2:-13538173 MS.gene020364:CDS
GCGGTATAACGAGCAGTTTC+TGG 0.246126 7.2:+13538823 None:intergenic
GTTATCTGTTCAATTGGTTC+TGG 0.268162 7.2:-13539207 MS.gene020364:CDS
AGGGTTGTCATGACAGATTT+TGG 0.291172 7.2:+13539165 None:intergenic
GGGGCTATAGTTGGTGCATT+CGG 0.293505 7.2:-13538187 MS.gene020364:CDS
ATTGGTTCTGGTCTTTCTTT+CGG 0.310334 7.2:-13539195 MS.gene020364:CDS
AACCTCCTCAAGTGCATTCA+TGG 0.318200 7.2:+13538540 None:intergenic
TGACAACCCTTTGCTTCTTC+CGG 0.331448 7.2:-13539152 MS.gene020364:CDS
ATTAGAATACTCCGACATTA+TGG 0.331666 7.2:+13539083 None:intergenic
CTTCTCCTCTTTCTGTGGTT+CGG 0.335668 7.2:+13538732 None:intergenic
CATAATTTCATCTGCATTCA+AGG 0.338184 7.2:-13538980 MS.gene020364:CDS
GTCTTTGCCATGCAGGGTTT+CGG 0.339550 7.2:-13539030 MS.gene020364:CDS
GGGCTATAGTTGGTGCATTC+GGG 0.341772 7.2:-13538186 MS.gene020364:CDS
TTGCACTGAAAATATCCTTC+TGG 0.362845 7.2:+13538587 None:intergenic
TTCCCCAAGCAGACTACATT+TGG 0.372520 7.2:-13538909 MS.gene020364:CDS
CCTCCAAATGTAGTCTGCTT+GGG 0.372673 7.2:+13538906 None:intergenic
GCAGTACAGTACCAGGCTAT+TGG 0.376413 7.2:-13538480 MS.gene020364:CDS
AAGATTTACCATCCAATTGA+TGG 0.386978 7.2:-13538428 MS.gene020364:CDS
TGGTGGTGACTACCCTCTTT+CGG 0.394304 7.2:-13539109 MS.gene020364:CDS
TGCAGCAGTCTTTGCCATGC+AGG 0.397867 7.2:-13539037 MS.gene020364:CDS
ACAACAAATGTTGTAGCATT+AGG 0.400761 7.2:+13538280 None:intergenic
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7.2:+13538416 None:intergenic
CATCCGCATCGGGAAAGCTT+GGG 0.403184 7.2:-13538207 MS.gene020364:CDS
TAGCACCTCAATTTGATCCT+TGG 0.413690 7.2:+13539527 None:intergenic
CGCATATACTACCACGTTGA+TGG 0.419141 7.2:-13539381 MS.gene020364:CDS
TCCTCCAAATGTAGTCTGCT+TGG 0.420387 7.2:+13538905 None:intergenic
TACCGAACCCAAGCCAAAAC+CGG 0.427494 7.2:+13539133 None:intergenic
TGGCTGGCTTGGTGATAAGA+TGG 0.431799 7.2:-13539268 MS.gene020364:CDS
GGTGAGAATGATGAGGAAGT+TGG 0.432793 7.2:-13537995 MS.gene020364:CDS
GGCAAATGGAAAATCTTTAG+AGG 0.436138 7.2:-13538026 MS.gene020364:CDS
GCAGGGTACCCTGCAGGTAT+TGG 0.442599 7.2:-13538121 MS.gene020364:CDS
ATGATGGTTATCTGTTCAAT+TGG 0.447387 7.2:-13539213 MS.gene020364:CDS
GGCAAAGACTGCTGCAATGA+AGG 0.448745 7.2:+13539044 None:intergenic
TGCAATCATCATAGCTGGTA+TGG 0.448896 7.2:-13539463 MS.gene020364:CDS
AGCTGCAGCAGATATGTCTA+AGG 0.462417 7.2:-13538776 MS.gene020364:CDS
TTATGAGTCCAGTGTTCATA+AGG 0.464297 7.2:+13538364 None:intergenic
GGCTGGCTTGGTGATAAGAT+GGG 0.464364 7.2:-13539267 MS.gene020364:CDS
TCATCCGCATCGGGAAAGCT+TGG 0.465982 7.2:-13538208 MS.gene020364:CDS
GACAAGAGTAAAGCAGATGC+AGG 0.466575 7.2:-13538139 MS.gene020364:CDS
AAGGAAAAGGCTAAATCATA+TGG 0.468204 7.2:-13538712 MS.gene020364:CDS
GAGTAGTAAGTCATTGCAGC+TGG 0.469391 7.2:+13538859 None:intergenic
TGGGGAACAGTTGAACCAAC+TGG 0.470918 7.2:+13538925 None:intergenic
ACATCACCACAAATCCTATT+CGG 0.472436 7.2:+13538335 None:intergenic
ATTCACAGCAGCTGATACAT+TGG 0.472564 7.2:+13539332 None:intergenic
TTCTTAGTACCCGAGGCAAA+TGG 0.472965 7.2:-13538040 MS.gene020364:CDS
GTGAATGGTGTTGCTTTCTG+TGG 0.474993 7.2:-13539315 MS.gene020364:CDS
ACTCATAAGGATAACCGAAT+AGG 0.475963 7.2:-13538349 MS.gene020364:CDS
TGAAGCCGAACCACAGAAAG+AGG 0.480495 7.2:-13538737 MS.gene020364:CDS
GACATTATGGTAGCCGAAAG+AGG 0.481182 7.2:+13539096 None:intergenic
TTTCATCTGCATTCAAGGCC+AGG 0.481632 7.2:-13538975 MS.gene020364:CDS
TGGCTTGGGTTCGGTATTGG+TGG 0.492801 7.2:-13539126 MS.gene020364:CDS
CTTGTATTTGGCACAAAACA+AGG 0.497426 7.2:-13538161 MS.gene020364:CDS
TTATGAACACTGGACTCATA+AGG 0.499390 7.2:-13538362 MS.gene020364:CDS
TCCCTTGTTACCAAGTTGCT+CGG 0.500986 7.2:-13539405 MS.gene020364:CDS
CCCAAAATTTGCAAAGAAGA+AGG 0.507277 7.2:+13538303 None:intergenic
CCCAAGCAGACTACATTTGG+AGG 0.513096 7.2:-13538906 MS.gene020364:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.513709 7.2:+13538550 None:intergenic
GGAAAGCTTGGGGCTATAGT+TGG 0.514607 7.2:-13538196 MS.gene020364:CDS
GCAGCAGTCTTTGCCATGCA+GGG 0.514618 7.2:-13539036 MS.gene020364:CDS
AGATTTACCATCCAATTGAT+GGG 0.514693 7.2:-13538427 MS.gene020364:CDS
CAAGTTGATCGAAATCTAGC+TGG 0.515101 7.2:+13538241 None:intergenic
TTCACTGCAATCATCATAGC+TGG 0.515551 7.2:-13539468 MS.gene020364:CDS
ACAGAAAGAGGAGAAGGAAA+AGG 0.518948 7.2:-13538725 MS.gene020364:CDS
GGATAACCGAATAGGATTTG+TGG 0.523531 7.2:-13538341 MS.gene020364:CDS
CATGGAATATCATCCGCATC+GGG 0.524513 7.2:-13538217 MS.gene020364:CDS
GGCTTGGTGATAAGATGGGC+AGG 0.528400 7.2:-13539263 MS.gene020364:CDS
GCCAAAACCGGAAGAAGCAA+AGG 0.528845 7.2:+13539145 None:intergenic
CTATGATGATTGCAGTGAAA+TGG 0.528943 7.2:+13539472 None:intergenic
GCATTCATGGTTTGTGCAGG+AGG 0.529180 7.2:+13538553 None:intergenic
TTCTTCATACCAATACCTGC+AGG 0.529263 7.2:+13538112 None:intergenic
CGAACCACAGAAAGAGGAGA+AGG 0.530308 7.2:-13538731 MS.gene020364:CDS
TTCACAGCAGCTGATACATT+GGG 0.530334 7.2:+13539333 None:intergenic
CGTCATGGACTACATTTGCT+TGG 0.532151 7.2:-13538664 MS.gene020364:CDS
GTGGCTTTCATAGACAGAAT+AGG 0.532759 7.2:-13538451 MS.gene020364:CDS
TACATTGGGAGGCAACGTAC+CGG 0.539000 7.2:+13539347 None:intergenic
AGATTTCGATCAACTTGCCA+TGG 0.539975 7.2:-13538235 MS.gene020364:CDS
AATGTATCAGCTGCTGTGAA+TGG 0.543645 7.2:-13539330 MS.gene020364:CDS
GCAGATGCAGGGTACCCTGC+AGG 0.546146 7.2:-13538127 MS.gene020364:CDS
GTTGATGGTGCAGCAAAGCC+CGG 0.548274 7.2:-13539366 MS.gene020364:CDS
GGCTTGAATAGTCATGGCCA+AGG 0.551613 7.2:-13539544 None:intergenic
GTCCGAGCAACTTGGTAACA+AGG 0.554046 7.2:+13539403 None:intergenic
AAATCTTTAGAGGAAATGTC+AGG 0.557207 7.2:-13538016 MS.gene020364:CDS
TTGCCATTCCTTATGAACAC+TGG 0.558026 7.2:-13538372 MS.gene020364:CDS
CCATGGAATATCATCCGCAT+CGG 0.559707 7.2:-13538218 MS.gene020364:CDS
TCTTACGAGGTTGATCCAGT+TGG 0.560435 7.2:-13538940 MS.gene020364:CDS
ACATTGGGAGGCAACGTACC+GGG 0.562466 7.2:+13539348 None:intergenic
TGGAGGATAATTGTGATGGT+AGG 0.563401 7.2:-13538889 MS.gene020364:CDS
AGTCCAGTGTTCATAAGGAA+TGG 0.563480 7.2:+13538369 None:intergenic
TGCTTGGTACAACAAGCACT+TGG 0.567808 7.2:-13538648 MS.gene020364:CDS
GCAATCATCATAGCTGGTAT+GGG 0.570874 7.2:-13539462 MS.gene020364:CDS
GAAGAATCCCATCAATTGGA+TGG 0.573451 7.2:+13538420 None:intergenic
CATTCATGGTTTGTGCAGGA+GGG 0.580236 7.2:+13538554 None:intergenic
TAGCCAAAATCTCTTCCAGA+AGG 0.581352 7.2:-13538602 MS.gene020364:CDS
GCCACGGTAAACCAATAGCC+TGG 0.581737 7.2:+13538469 None:intergenic
GCTCTATGCAGTACAGTACC+AGG 0.583363 7.2:-13538487 MS.gene020364:CDS
AAAGAGTTCATGAGTCGTCA+TGG 0.583437 7.2:-13538679 MS.gene020364:CDS
TGGTATGACCCTCATGATGA+TGG 0.586953 7.2:-13539229 MS.gene020364:CDS
AACCATGAATGCACTTGAGG+AGG 0.589777 7.2:-13538542 MS.gene020364:CDS
CCGATGCGGATGATATTCCA+TGG 0.591183 7.2:+13538218 None:intergenic
CATGGCCAAGGATCAAATTG+AGG 0.592004 7.2:-13539532 MS.gene020364:CDS
CCAAAACCGGAAGAAGCAAA+GGG 0.592671 7.2:+13539146 None:intergenic
AGCCCCAAGCTTTCCCGATG+CGG 0.596062 7.2:+13538204 None:intergenic
CTCCAAATGTAGTCTGCTTG+GGG 0.596396 7.2:+13538907 None:intergenic
ATCCGCATCGGGAAAGCTTG+GGG 0.597584 7.2:-13538206 MS.gene020364:CDS
AATGTCAGGTGAGAATGATG+AGG 0.605492 7.2:-13538002 MS.gene020364:CDS
CATTTGGAGGATAATTGTGA+TGG 0.611828 7.2:-13538893 MS.gene020364:CDS
GCGTTGTTATTCTGAGCATG+AGG 0.612504 7.2:+13537950 None:intergenic
GTTTGATTCTCCGTCTTACG+AGG 0.613183 7.2:-13538953 MS.gene020364:CDS
ACTGGATCAACCTCGTAAGA+CGG 0.613448 7.2:+13538943 None:intergenic
ACAAACCATGAATGCACTTG+AGG 0.613620 7.2:-13538545 MS.gene020364:CDS
AGTAGTAAGTCATTGCAGCT+GGG 0.615517 7.2:+13538860 None:intergenic
AACAGATAACCATCATCATG+AGG 0.618082 7.2:+13539220 None:intergenic
GTATATGCGTCCGAGCAACT+TGG 0.620992 7.2:+13539395 None:intergenic
ACATTATGGTAGCCGAAAGA+GGG 0.623125 7.2:+13539097 None:intergenic
ACCAGGCTATTGGTTTACCG+TGG 0.630346 7.2:-13538470 MS.gene020364:CDS
TATTCTGTCTATGAAAGCCA+CGG 0.630634 7.2:+13538453 None:intergenic
GGTGCTAAATGCGCTTGATG+TGG 0.631666 7.2:-13539511 MS.gene020364:CDS
ATTTGCAAAGAAGAAGGTCA+AGG 0.633508 7.2:+13538309 None:intergenic
GTGCACTTTCTTAGTACCCG+AGG 0.637975 7.2:-13538047 MS.gene020364:CDS
AATGGCAAGAGCAAACATGA+AGG 0.639251 7.2:+13538387 None:intergenic
CAAAATTCCGAAACCCTGCA+TGG 0.639934 7.2:+13539023 None:intergenic
TCCGAGCAACTTGGTAACAA+GGG 0.641166 7.2:+13539404 None:intergenic
ACAGCAGCTGATACATTGGG+AGG 0.653095 7.2:+13539336 None:intergenic
ACAAGAGTAAAGCAGATGCA+GGG 0.657371 7.2:-13538138 MS.gene020364:CDS
TCTTTCGGCTACCATAATGT+CGG 0.663564 7.2:-13539094 MS.gene020364:CDS
GTAAGACGGAGAATCAAACC+TGG 0.669834 7.2:+13538957 None:intergenic
CTGCAATGACTTACTACTCG+CGG 0.671835 7.2:-13538855 MS.gene020364:CDS
GGCAAGAGCAAACATGAAGG+CGG 0.671889 7.2:+13538390 None:intergenic
ACAGATAACCATCATCATGA+GGG 0.673555 7.2:+13539221 None:intergenic
TCTTCATACCAATACCTGCA+GGG 0.687460 7.2:+13538113 None:intergenic
TGTGTTCTTAGCAACTAAAG+CGG 0.693409 7.2:+13538804 None:intergenic
TTGATGTGGCTAAAACACAA+TGG 0.704796 7.2:-13539497 MS.gene020364:CDS
GCTTTGCTGCACCATCAACG+TGG 0.731004 7.2:+13539370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATTCATTGATTTTGTT+GGG - chr7.2:13539377-13539396 MS.gene020364:CDS 20.0%
! ATTCTAATAAAAAGACTCGT+GGG - chr7.2:13538403-13538422 MS.gene020364:CDS 25.0%
! TATTCTAATAAAAAGACTCG+TGG - chr7.2:13538402-13538421 MS.gene020364:CDS 25.0%
!!! GAAGAATTCATTGATTTTGT+TGG - chr7.2:13539376-13539395 MS.gene020364:CDS 25.0%
AAGATTTACCATCCAATTGA+TGG - chr7.2:13539043-13539062 MS.gene020364:CDS 30.0%
AAGGAAAAGGCTAAATCATA+TGG - chr7.2:13538759-13538778 MS.gene020364:CDS 30.0%
ACAACAAATGTTGTAGCATT+AGG + chr7.2:13539194-13539213 None:intergenic 30.0%
AGATTTACCATCCAATTGAT+GGG - chr7.2:13539044-13539063 MS.gene020364:CDS 30.0%
ATGATGGTTATCTGTTCAAT+TGG - chr7.2:13538258-13538277 MS.gene020364:CDS 30.0%
ATTAGAATACTCCGACATTA+TGG + chr7.2:13538391-13538410 None:intergenic 30.0%
CATAATTTCATCTGCATTCA+AGG - chr7.2:13538491-13538510 MS.gene020364:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG + chr7.2:13539058-13539077 None:intergenic 30.0%
TTCTAATAAAAAGACTCGTG+GGG - chr7.2:13538404-13538423 MS.gene020364:CDS 30.0%
! AAATCTTTAGAGGAAATGTC+AGG - chr7.2:13539455-13539474 MS.gene020364:CDS 30.0%
! AAGGATATTTTCAGTGCAAT+TGG - chr7.2:13538888-13538907 MS.gene020364:CDS 30.0%
! ACCTTCTTCTTTGCAAATTT+TGG - chr7.2:13539167-13539186 MS.gene020364:CDS 30.0%
! ATATTTTCAGTGCAATTGGT+TGG - chr7.2:13538892-13538911 MS.gene020364:CDS 30.0%
! CCTTCTTCTTTGCAAATTTT+GGG - chr7.2:13539168-13539187 MS.gene020364:CDS 30.0%
! TAAAGATTTTCCATTTGCCT+CGG + chr7.2:13539444-13539463 None:intergenic 30.0%
! TTGGGATGTTGTAACATTTT+GGG - chr7.2:13539395-13539414 MS.gene020364:CDS 30.0%
AACAGATAACCATCATCATG+AGG + chr7.2:13538254-13538273 None:intergenic 35.0%
ACAGATAACCATCATCATGA+GGG + chr7.2:13538253-13538272 None:intergenic 35.0%
ACATCACCACAAATCCTATT+CGG + chr7.2:13539139-13539158 None:intergenic 35.0%
ACTCATAAGGATAACCGAAT+AGG - chr7.2:13539122-13539141 MS.gene020364:CDS 35.0%
ATTTGCAAAGAAGAAGGTCA+AGG + chr7.2:13539165-13539184 None:intergenic 35.0%
CATTTGGAGGATAATTGTGA+TGG - chr7.2:13538578-13538597 MS.gene020364:CDS 35.0%
CCCAAAATTTGCAAAGAAGA+AGG + chr7.2:13539171-13539190 None:intergenic 35.0%
CTATGATGATTGCAGTGAAA+TGG + chr7.2:13538002-13538021 None:intergenic 35.0%
CTTGTATTTGGCACAAAACA+AGG - chr7.2:13539310-13539329 MS.gene020364:CDS 35.0%
GGCAAATGGAAAATCTTTAG+AGG - chr7.2:13539445-13539464 MS.gene020364:CDS 35.0%
TATTCTGTCTATGAAAGCCA+CGG + chr7.2:13539021-13539040 None:intergenic 35.0%
TGTGTTCTTAGCAACTAAAG+CGG + chr7.2:13538670-13538689 None:intergenic 35.0%
TTATGAACACTGGACTCATA+AGG - chr7.2:13539109-13539128 MS.gene020364:CDS 35.0%
TTATGAGTCCAGTGTTCATA+AGG + chr7.2:13539110-13539129 None:intergenic 35.0%
TTGATGTGGCTAAAACACAA+TGG - chr7.2:13537974-13537993 MS.gene020364:CDS 35.0%
TTGCACTGAAAATATCCTTC+TGG + chr7.2:13538887-13538906 None:intergenic 35.0%
! AAAGATTTTCCATTTGCCTC+GGG + chr7.2:13539443-13539462 None:intergenic 35.0%
! CTTTCAGGACAACTTTTCTT+TGG - chr7.2:13538183-13538202 MS.gene020364:CDS 35.0%
! GTTATCTGTTCAATTGGTTC+TGG - chr7.2:13538264-13538283 MS.gene020364:CDS 35.0%
! GTTGGGATGTTGTAACATTT+TGG - chr7.2:13539394-13539413 MS.gene020364:CDS 35.0%
! TGGGATGTTGTAACATTTTG+GGG - chr7.2:13539396-13539415 MS.gene020364:CDS 35.0%
!! AGATATGTCTAAGGTTTTGC+AGG - chr7.2:13538704-13538723 MS.gene020364:CDS 35.0%
!! ATTGGTTCTGGTCTTTCTTT+CGG - chr7.2:13538276-13538295 MS.gene020364:CDS 35.0%
!! TATCCTTCTGGAAGAGATTT+TGG + chr7.2:13538875-13538894 None:intergenic 35.0%
AAAGAGTTCATGAGTCGTCA+TGG - chr7.2:13538792-13538811 MS.gene020364:CDS 40.0%
AATGGCAAGAGCAAACATGA+AGG + chr7.2:13539087-13539106 None:intergenic 40.0%
AATGTATCAGCTGCTGTGAA+TGG - chr7.2:13538141-13538160 MS.gene020364:CDS 40.0%
AATGTCAGGTGAGAATGATG+AGG - chr7.2:13539469-13539488 MS.gene020364:CDS 40.0%
ACAAACCATGAATGCACTTG+AGG - chr7.2:13538926-13538945 MS.gene020364:CDS 40.0%
ACAAGAGTAAAGCAGATGCA+GGG - chr7.2:13539333-13539352 MS.gene020364:CDS 40.0%
ACAGAAAGAGGAGAAGGAAA+AGG - chr7.2:13538746-13538765 MS.gene020364:CDS 40.0%
ACATTATGGTAGCCGAAAGA+GGG + chr7.2:13538377-13538396 None:intergenic 40.0%
AGATTTCGATCAACTTGCCA+TGG - chr7.2:13539236-13539255 MS.gene020364:CDS 40.0%
AGTAGTAAGTCATTGCAGCT+GGG + chr7.2:13538614-13538633 None:intergenic 40.0%
AGTCCAGTGTTCATAAGGAA+TGG + chr7.2:13539105-13539124 None:intergenic 40.0%
ATGGGCAGGAAAAAAGTCTA+TGG - chr7.2:13538222-13538241 MS.gene020364:CDS 40.0%
ATTCACAGCAGCTGATACAT+TGG + chr7.2:13538142-13538161 None:intergenic 40.0%
GAAGAATCCCATCAATTGGA+TGG + chr7.2:13539054-13539073 None:intergenic 40.0%
GCAATCATCATAGCTGGTAT+GGG - chr7.2:13538009-13538028 MS.gene020364:CDS 40.0%
GGATAACCGAATAGGATTTG+TGG - chr7.2:13539130-13539149 MS.gene020364:CDS 40.0%
GTGGCTTTCATAGACAGAAT+AGG - chr7.2:13539020-13539039 MS.gene020364:CDS 40.0%
TAGCACCTCAATTTGATCCT+TGG + chr7.2:13537947-13537966 None:intergenic 40.0%
TAGCCAAAATCTCTTCCAGA+AGG - chr7.2:13538869-13538888 MS.gene020364:CDS 40.0%
TCTTCATACCAATACCTGCA+GGG + chr7.2:13539361-13539380 None:intergenic 40.0%
TCTTTCGGCTACCATAATGT+CGG - chr7.2:13538377-13538396 MS.gene020364:CDS 40.0%
TGCAATCATCATAGCTGGTA+TGG - chr7.2:13538008-13538027 MS.gene020364:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG - chr7.2:13538582-13538601 MS.gene020364:CDS 40.0%
TTCACAGCAGCTGATACATT+GGG + chr7.2:13538141-13538160 None:intergenic 40.0%
TTCACTGCAATCATCATAGC+TGG - chr7.2:13538003-13538022 MS.gene020364:CDS 40.0%
TTCTTCATACCAATACCTGC+AGG + chr7.2:13539362-13539381 None:intergenic 40.0%
TTGCCATTCCTTATGAACAC+TGG - chr7.2:13539099-13539118 MS.gene020364:CDS 40.0%
! AGGGTTGTCATGACAGATTT+TGG + chr7.2:13538309-13538328 None:intergenic 40.0%
! ATGCAGGGTTTCGGAATTTT+GGG - chr7.2:13538450-13538469 MS.gene020364:CDS 40.0%
! TGCATTCGGGTTCTTGTATT+TGG - chr7.2:13539298-13539317 MS.gene020364:CDS 40.0%
! TTTTCCTTCTCCTCTTTCTG+TGG + chr7.2:13538747-13538766 None:intergenic 40.0%
!! CAAGTTGATCGAAATCTAGC+TGG + chr7.2:13539233-13539252 None:intergenic 40.0%
AACCATGAATGCACTTGAGG+AGG - chr7.2:13538929-13538948 MS.gene020364:CDS 45.0%
AACCTCCTCAAGTGCATTCA+TGG + chr7.2:13538934-13538953 None:intergenic 45.0%
ACTGGATCAACCTCGTAAGA+CGG + chr7.2:13538531-13538550 None:intergenic 45.0%
AGCTGCAGCAGATATGTCTA+AGG - chr7.2:13538695-13538714 MS.gene020364:CDS 45.0%
CAAAATTCCGAAACCCTGCA+TGG + chr7.2:13538451-13538470 None:intergenic 45.0%
CATGGAATATCATCCGCATC+GGG - chr7.2:13539254-13539273 MS.gene020364:CDS 45.0%
CCAAAACCGGAAGAAGCAAA+GGG + chr7.2:13538328-13538347 None:intergenic 45.0%
CCATGGAATATCATCCGCAT+CGG - chr7.2:13539253-13539272 MS.gene020364:CDS 45.0%
CCTCCAAATGTAGTCTGCTT+GGG + chr7.2:13538568-13538587 None:intergenic 45.0%
CGCATATACTACCACGTTGA+TGG - chr7.2:13538090-13538109 MS.gene020364:CDS 45.0%
CTAGCTGGAAAAATCTCTGC+TGG + chr7.2:13539218-13539237 None:intergenic 45.0%
CTCCAAATGTAGTCTGCTTG+GGG + chr7.2:13538567-13538586 None:intergenic 45.0%
CTGCAATGACTTACTACTCG+CGG - chr7.2:13538616-13538635 MS.gene020364:CDS 45.0%
CTTCTCCTCTTTCTGTGGTT+CGG + chr7.2:13538742-13538761 None:intergenic 45.0%
GACAAGAGTAAAGCAGATGC+AGG - chr7.2:13539332-13539351 MS.gene020364:CDS 45.0%
GACATTATGGTAGCCGAAAG+AGG + chr7.2:13538378-13538397 None:intergenic 45.0%
GAGTAGTAAGTCATTGCAGC+TGG + chr7.2:13538615-13538634 None:intergenic 45.0%
GCTTTCTGTGGAACACTTTC+AGG - chr7.2:13538168-13538187 MS.gene020364:CDS 45.0%
GGTGAGAATGATGAGGAAGT+TGG - chr7.2:13539476-13539495 MS.gene020364:CDS 45.0%
GTAAGACGGAGAATCAAACC+TGG + chr7.2:13538517-13538536 None:intergenic 45.0%
GTTTGATTCTCCGTCTTACG+AGG - chr7.2:13538518-13538537 MS.gene020364:CDS 45.0%
TCCCTTGTTACCAAGTTGCT+CGG - chr7.2:13538066-13538085 MS.gene020364:CDS 45.0%
TCCTCCAAATGTAGTCTGCT+TGG + chr7.2:13538569-13538588 None:intergenic 45.0%
TGACAACCCTTTGCTTCTTC+CGG - chr7.2:13538319-13538338 MS.gene020364:CDS 45.0%
TGCTTGGTACAACAAGCACT+TGG - chr7.2:13538823-13538842 MS.gene020364:CDS 45.0%
TGGTATGACCCTCATGATGA+TGG - chr7.2:13538242-13538261 MS.gene020364:CDS 45.0%
TTCCCCAAGCAGACTACATT+TGG - chr7.2:13538562-13538581 MS.gene020364:CDS 45.0%
TTCTTAGTACCCGAGGCAAA+TGG - chr7.2:13539431-13539450 MS.gene020364:CDS 45.0%
TTTCATCTGCATTCAAGGCC+AGG - chr7.2:13538496-13538515 MS.gene020364:CDS 45.0%
! AGTGCATTCATGGTTTGTGC+AGG + chr7.2:13538924-13538943 None:intergenic 45.0%
! CAGGACAACTTTTCTTTGGC+TGG - chr7.2:13538187-13538206 MS.gene020364:CDS 45.0%
! CATGCAGGGTTTCGGAATTT+TGG - chr7.2:13538449-13538468 MS.gene020364:CDS 45.0%
! CATTCATGGTTTGTGCAGGA+GGG + chr7.2:13538920-13538939 None:intergenic 45.0%
! CGTCATGGACTACATTTGCT+TGG - chr7.2:13538807-13538826 MS.gene020364:CDS 45.0%
! GCGTTGTTATTCTGAGCATG+AGG + chr7.2:13539524-13539543 None:intergenic 45.0%
! TCCGAGCAACTTGGTAACAA+GGG + chr7.2:13538070-13538089 None:intergenic 45.0%
! TCTTACGAGGTTGATCCAGT+TGG - chr7.2:13538531-13538550 MS.gene020364:CDS 45.0%
!! CAACTTTTCTTTGGCTGGCT+TGG - chr7.2:13538192-13538211 MS.gene020364:CDS 45.0%
!! GTGAATGGTGTTGCTTTCTG+TGG - chr7.2:13538156-13538175 MS.gene020364:CDS 45.0%
!!! TTTTGGCTTGGGTTCGGTAT+TGG - chr7.2:13538342-13538361 MS.gene020364:CDS 45.0%
ACAGCAGCTGATACATTGGG+AGG + chr7.2:13538138-13538157 None:intergenic 50.0%
CCCAAGCAGACTACATTTGG+AGG - chr7.2:13538565-13538584 MS.gene020364:CDS 50.0%
CCGATGCGGATGATATTCCA+TGG + chr7.2:13539256-13539275 None:intergenic 50.0%
CGAACCACAGAAAGAGGAGA+AGG - chr7.2:13538740-13538759 MS.gene020364:CDS 50.0%
GCAGTACAGTACCAGGCTAT+TGG - chr7.2:13538991-13539010 MS.gene020364:CDS 50.0%
GCCAAAACCGGAAGAAGCAA+AGG + chr7.2:13538329-13538348 None:intergenic 50.0%
GCGGTATAACGAGCAGTTTC+TGG + chr7.2:13538651-13538670 None:intergenic 50.0%
GCTCTATGCAGTACAGTACC+AGG - chr7.2:13538984-13539003 MS.gene020364:CDS 50.0%
GGAAAGCTTGGGGCTATAGT+TGG - chr7.2:13539275-13539294 MS.gene020364:CDS 50.0%
GGCAAAGACTGCTGCAATGA+AGG + chr7.2:13538430-13538449 None:intergenic 50.0%
GGCAAGAGCAAACATGAAGG+CGG + chr7.2:13539084-13539103 None:intergenic 50.0%
GGTGCTAAATGCGCTTGATG+TGG - chr7.2:13537960-13537979 MS.gene020364:CDS 50.0%
GTATATGCGTCCGAGCAACT+TGG + chr7.2:13538079-13538098 None:intergenic 50.0%
GTCTTTGCCATGCAGGGTTT+CGG - chr7.2:13538441-13538460 MS.gene020364:CDS 50.0%
GTGCACTTTCTTAGTACCCG+AGG - chr7.2:13539424-13539443 MS.gene020364:CDS 50.0%
TACATTGGGAGGCAACGTAC+CGG + chr7.2:13538127-13538146 None:intergenic 50.0%
TACCGAACCCAAGCCAAAAC+CGG + chr7.2:13538341-13538360 None:intergenic 50.0%
TGAAGCCGAACCACAGAAAG+AGG - chr7.2:13538734-13538753 MS.gene020364:CDS 50.0%
TGGGGAACAGTTGAACCAAC+TGG + chr7.2:13538549-13538568 None:intergenic 50.0%
! CCCTTTGCTTCTTCCGGTTT+TGG - chr7.2:13538325-13538344 MS.gene020364:CDS 50.0%
! GCATTCATGGTTTGTGCAGG+AGG + chr7.2:13538921-13538940 None:intergenic 50.0%
! GGGCTATAGTTGGTGCATTC+GGG - chr7.2:13539285-13539304 MS.gene020364:CDS 50.0%
! GGGGCTATAGTTGGTGCATT+CGG - chr7.2:13539284-13539303 MS.gene020364:CDS 50.0%
! GTCCGAGCAACTTGGTAACA+AGG + chr7.2:13538071-13538090 None:intergenic 50.0%
! TGGTGGTGACTACCCTCTTT+CGG - chr7.2:13538362-13538381 MS.gene020364:CDS 50.0%
!! ACCAGGCTATTGGTTTACCG+TGG - chr7.2:13539001-13539020 MS.gene020364:CDS 50.0%
!! GGCTGGCTTGGTGATAAGAT+GGG - chr7.2:13538204-13538223 MS.gene020364:CDS 50.0%
!! GGTTTCGGAATTTTGGGAGC+TGG - chr7.2:13538456-13538475 MS.gene020364:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGA+TGG - chr7.2:13538203-13538222 MS.gene020364:CDS 50.0%
!!! GCTTCTTCCGGTTTTGGCTT+GGG - chr7.2:13538331-13538350 MS.gene020364:CDS 50.0%
!!! TGCTTCTTCCGGTTTTGGCT+TGG - chr7.2:13538330-13538349 MS.gene020364:CDS 50.0%
!!! TTCCGGTTTTGGCTTGGGTT+CGG - chr7.2:13538336-13538355 MS.gene020364:CDS 50.0%
ACATTGGGAGGCAACGTACC+GGG + chr7.2:13538126-13538145 None:intergenic 55.0%
ATCCGCATCGGGAAAGCTTG+GGG - chr7.2:13539265-13539284 MS.gene020364:CDS 55.0%
CATCCGCATCGGGAAAGCTT+GGG - chr7.2:13539264-13539283 MS.gene020364:CDS 55.0%
GCAGCAGTCTTTGCCATGCA+GGG - chr7.2:13538435-13538454 MS.gene020364:CDS 55.0%
GCCACGGTAAACCAATAGCC+TGG + chr7.2:13539005-13539024 None:intergenic 55.0%
GCTTTGCTGCACCATCAACG+TGG + chr7.2:13538104-13538123 None:intergenic 55.0%
TCATCCGCATCGGGAAAGCT+TGG - chr7.2:13539263-13539282 MS.gene020364:CDS 55.0%
TGCAGCAGTCTTTGCCATGC+AGG - chr7.2:13538434-13538453 MS.gene020364:CDS 55.0%
! TGGCTTGGGTTCGGTATTGG+TGG - chr7.2:13538345-13538364 MS.gene020364:CDS 55.0%
!! GGCTTGGTGATAAGATGGGC+AGG - chr7.2:13538208-13538227 MS.gene020364:CDS 55.0%
!! GTTGATGGTGCAGCAAAGCC+CGG - chr7.2:13538105-13538124 MS.gene020364:CDS 55.0%
AGCCCCAAGCTTTCCCGATG+CGG + chr7.2:13539270-13539289 None:intergenic 60.0%
! GCAGGGTACCCTGCAGGTAT+TGG - chr7.2:13539350-13539369 MS.gene020364:CDS 60.0%
! GCAGATGCAGGGTACCCTGC+AGG - chr7.2:13539344-13539363 MS.gene020364:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 13537940 13539553 13537940 ID=MS.gene020364
chr7.2 mRNA 13537940 13539553 13537940 ID=MS.gene020364.t1;Parent=MS.gene020364
chr7.2 exon 13537940 13539553 13537940 ID=MS.gene020364.t1.exon1;Parent=MS.gene020364.t1
chr7.2 CDS 13537940 13539553 13537940 ID=cds.MS.gene020364.t1;Parent=MS.gene020364.t1
Gene Sequence

>MS.gene020364

ATGGCCAAGGATCAAATTGAGGTGCTAAATGCGCTTGATGTGGCTAAAACACAATGGTACCATTTCACTGCAATCATCATAGCTGGTATGGGATTCTTTACAGATGCATATGATCTGTTCTGTGTATCCCTTGTTACCAAGTTGCTCGGACGCATATACTACCACGTTGATGGTGCAGCAAAGCCCGGTACGTTGCCTCCCAATGTATCAGCTGCTGTGAATGGTGTTGCTTTCTGTGGAACACTTTCAGGACAACTTTTCTTTGGCTGGCTTGGTGATAAGATGGGCAGGAAAAAAGTCTATGGTATGACCCTCATGATGATGGTTATCTGTTCAATTGGTTCTGGTCTTTCTTTCGGACACACTCCAAAATCTGTCATGACAACCCTTTGCTTCTTCCGGTTTTGGCTTGGGTTCGGTATTGGTGGTGACTACCCTCTTTCGGCTACCATAATGTCGGAGTATTCTAATAAAAAGACTCGTGGGGCCTTCATTGCAGCAGTCTTTGCCATGCAGGGTTTCGGAATTTTGGGAGCTGGTATATTTGCAATCATAATTTCATCTGCATTCAAGGCCAGGTTTGATTCTCCGTCTTACGAGGTTGATCCAGTTGGTTCAACTGTTCCCCAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCAGCTGCAATGACTTACTACTCGCGGACAAAGATGCCAGAAACTGCTCGTTATACCGCTTTAGTTGCTAAGAACACAGCGCAAGCTGCAGCAGATATGTCTAAGGTTTTGCAGGTTGAGATTGAAGCCGAACCACAGAAAGAGGAGAAGGAAAAGGCTAAATCATATGGCTTGTTCTCAAAAGAGTTCATGAGTCGTCATGGACTACATTTGCTTGGTACAACAAGCACTTGGTTCTTGCTTGACATAGCATTTTATAGCCAAAATCTCTTCCAGAAGGATATTTTCAGTGCAATTGGTTGGATCCCTCCTGCACAAACCATGAATGCACTTGAGGAGGTTTACAAAATTGCGCGAGCTCAAACACTTATTGCTCTATGCAGTACAGTACCAGGCTATTGGTTTACCGTGGCTTTCATAGACAGAATAGGAAGATTTACCATCCAATTGATGGGATTCTTCTTTATGACCGCCTTCATGTTTGCTCTTGCCATTCCTTATGAACACTGGACTCATAAGGATAACCGAATAGGATTTGTGGTGATGTATTCCTTGACCTTCTTCTTTGCAAATTTTGGGCCTAATGCTACAACATTTGTTGTGCCAGCAGAGATTTTTCCAGCTAGATTTCGATCAACTTGCCATGGAATATCATCCGCATCGGGAAAGCTTGGGGCTATAGTTGGTGCATTCGGGTTCTTGTATTTGGCACAAAACAAGGACAAGAGTAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTATGAAGAATTCATTGATTTTGTTGGGATGTTGTAACATTTTGGGGTTCTTGTGCACTTTCTTAGTACCCGAGGCAAATGGAAAATCTTTAGAGGAAATGTCAGGTGAGAATGATGAGGAAGTTGGAAGCAGAGAAGATGTAGAGAAACCTCATGCTCAGAATAACAACGCTGTTCCATAG
Protein sequence

>MS.gene020364.t1

MAKDQIEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCVSLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMMMVICSIGSGLSFGHTPKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGAGIFAIIISSAFKARFDSPSYEVDPVGSTVPQADYIWRIIVMVGALPAAMTYYSRTKMPETARYTALVAKNTAQAAADMSKVLQVEIEAEPQKEEKEKAKSYGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYKIARAQTLIALCSTVPGYWFTVAFIDRIGRFTIQLMGFFFMTAFMFALAIPYEHWTHKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGAFGFLYLAQNKDKSKADAGYPAGIGMKNSLILLGCCNILGFLCTFLVPEANGKSLEEMSGENDEEVGSREDVEKPHAQNNNAVP