AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020365

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020365.t1 MTR_7g096880 98.321 536 9 0 1 536 1 536 0.0 1088
MS.gene020365.t1 MTR_7g096870 91.199 534 45 1 1 532 1 534 0.0 990
MS.gene020365.t1 MTR_1g069935 86.486 518 68 1 1 516 1 518 0.0 942
MS.gene020365.t1 MTR_1g069930 74.907 538 131 2 1 535 1 537 0.0 850
MS.gene020365.t1 MTR_1g074930 76.449 535 118 3 5 533 4 536 0.0 847
MS.gene020365.t1 MTR_3g082700 75.881 539 124 2 1 533 1 539 0.0 830
MS.gene020365.t1 MTR_1g043220 75.564 532 124 2 5 530 4 535 0.0 823
MS.gene020365.t1 MTR_1g043290 75.803 529 122 2 5 527 4 532 0.0 821
MS.gene020365.t1 MTR_1g074940 77.432 514 94 4 1 506 1 500 0.0 819
MS.gene020365.t1 MTR_1g043200 75.758 528 122 2 5 526 4 531 0.0 817
MS.gene020365.t1 MTR_1g028600 61.165 515 186 3 6 517 3 506 0.0 637
MS.gene020365.t1 MTR_5g068140 58.791 546 195 4 8 532 7 543 0.0 634
MS.gene020365.t1 MTR_4g083960 53.042 526 221 12 6 522 5 513 0.0 523
MS.gene020365.t1 MTR_3g084110 24.215 446 278 15 76 510 76 472 6.41e-17 84.0
MS.gene020365.t1 MTR_7g005910 24.301 465 266 18 87 525 92 496 1.61e-16 82.8
MS.gene020365.t1 MTR_1g116660 23.581 458 279 18 90 530 97 500 2.80e-15 79.0
MS.gene020365.t1 MTR_7g446340 22.658 459 303 13 75 524 99 514 6.01e-15 77.8
MS.gene020365.t1 MTR_6g007340 22.658 459 303 13 75 524 99 514 6.01e-15 77.8
MS.gene020365.t1 MTR_1g116650 21.769 441 268 15 90 517 140 516 3.60e-14 75.5
MS.gene020365.t1 MTR_6g088450 24.670 454 266 15 75 505 102 502 1.50e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020365.t1 AT3G54700 86.074 517 71 1 1 516 1 517 0.0 930
MS.gene020365.t1 AT3G54700 86.074 517 71 1 1 516 1 517 0.0 930
MS.gene020365.t1 AT2G38940 85.271 516 71 1 1 511 1 516 0.0 927
MS.gene020365.t1 AT2G32830 74.627 536 130 1 1 530 1 536 0.0 850
MS.gene020365.t1 AT5G43350 77.992 518 110 1 1 514 1 518 0.0 840
MS.gene020365.t1 AT5G43360 77.115 520 115 1 1 516 1 520 0.0 831
MS.gene020365.t1 AT5G43370 77.799 518 111 1 1 514 1 518 0.0 812
MS.gene020365.t1 AT5G43370 77.799 518 111 1 1 514 1 518 0.0 812
MS.gene020365.t1 AT5G43340 67.954 518 149 2 3 516 4 508 0.0 746
MS.gene020365.t1 AT1G76430 50.095 527 232 11 5 516 3 513 5.29e-177 509
MS.gene020365.t1 AT1G20860 50.566 530 238 10 6 526 3 517 2.48e-174 503
MS.gene020365.t1 AT1G20860 50.566 530 238 10 6 526 55 569 4.38e-174 504
MS.gene020365.t1 AT4G08878 70.168 238 71 0 31 268 13 250 4.81e-119 352
MS.gene020365.t1 AT4G08895 55.944 143 31 1 316 458 23 133 3.70e-47 162
MS.gene020365.t1 AT2G43330 23.077 468 271 19 90 530 93 498 4.30e-12 68.9

Find 150 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAGGGGTTTGGAATTT+TGG 0.077597 7.2:-13509713 MS.gene020365:CDS
CTTGGGTGTGGTTAACATTT+TGG 0.093159 7.2:-13508774 MS.gene020365:CDS
ACCTTCTTCTTTGCAAATTT+CGG 0.147299 7.2:-13509001 MS.gene020365:CDS
CCTTCTTCTTTGCAAATTTC+GGG 0.150570 7.2:-13509000 MS.gene020365:CDS
GGGGCTATGGTTGGTGCATT+TGG 0.177381 7.2:-13508884 MS.gene020365:CDS
ATTGGTTCCGGCCTTTCTTT+TGG 0.221455 7.2:-13509886 MS.gene020365:CDS
AGAGTTGCCATGACAGATTT+TGG 0.232908 7.2:+13509856 None:intergenic
GCAGTGTAACGAGCAGTTTC+TGG 0.260006 7.2:+13509514 None:intergenic
CTCCAACTCTCCATTGGTTC+CGG 0.285347 7.2:+13508673 None:intergenic
GTCTTTGCCATGCAGGGGTT+TGG 0.289260 7.2:-13509721 MS.gene020365:CDS
GGGCTATGGTTGGTGCATTT+GGG 0.293475 7.2:-13508883 MS.gene020365:CDS
AACCTCTTCAAGTGCATTCA+TGG 0.307238 7.2:+13509237 None:intergenic
GCTTTCGTTGGTACACTTAC+AGG 0.308824 7.2:-13509994 MS.gene020365:CDS
TGCATTTGGGTTCTTGTACT+TGG 0.328684 7.2:-13508870 MS.gene020365:CDS
TGCTGCAGTCTTTGCCATGC+AGG 0.350042 7.2:-13509728 MS.gene020365:CDS
TGAGGCAAATGGAAAATCTT+TGG 0.360198 7.2:-13508726 MS.gene020365:CDS
CATCCGCATCTGGGAAGCTT+GGG 0.365616 7.2:-13508904 MS.gene020365:CDS
TGGTGGAGACTACCCGCTTT+CGG 0.368286 7.2:-13509800 MS.gene020365:CDS
TTCCACAAGCAGACTACATT+TGG 0.370224 7.2:-13509600 MS.gene020365:CDS
GAAGAATTCACTGCTTCTCT+TGG 0.374421 7.2:-13508792 MS.gene020365:CDS
AATGGCAAAGGATCAAATTC+AGG 0.374971 7.2:-13510223 MS.gene020365:CDS
ATGTATCAGCTGCTGTCAAC+GGG 0.375859 7.2:-13510020 MS.gene020365:CDS
GCTCTATGCAGTACAGTTCC+AGG 0.379557 7.2:-13509184 MS.gene020365:CDS
TTGCACTGAAGATATCCTTC+TGG 0.385824 7.2:+13509284 None:intergenic
TGGCTTGGGTTTGGTATTGG+TGG 0.390538 7.2:-13509817 MS.gene020365:CDS
CATGGAATATCATCCGCATC+TGG 0.393884 7.2:-13508914 MS.gene020365:CDS
ACAACAAAGGTGGTAGCATT+AGG 0.393956 7.2:+13508977 None:intergenic
AAGGTTTAAAATCCAATTGA+TGG 0.395559 7.2:-13509125 MS.gene020365:CDS
AAGGATATCTTCAGTGCAAT+TGG 0.401424 7.2:-13509280 MS.gene020365:CDS
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7.2:+13509113 None:intergenic
CAGGCACCAAGAAAGTAAAA+AGG 0.403508 7.2:+13508747 None:intergenic
GTAATCTGCTCCATTGGTTC+CGG 0.408621 7.2:-13509898 MS.gene020365:CDS
TGGCTGGCTTGGTGATAAGT+TGG 0.412115 7.2:-13509959 MS.gene020365:CDS
GGCTGGCTTGGTGATAAGTT+GGG 0.421208 7.2:-13509958 MS.gene020365:CDS
ATCTGGGAAGCTTGGGGCTA+TGG 0.422747 7.2:-13508897 MS.gene020365:CDS
CATAGTTTCAGCTGCATTCA+AGG 0.430576 7.2:-13509671 MS.gene020365:CDS
TTATGAGTCCAGTGATCATA+TGG 0.434933 7.2:+13509061 None:intergenic
GGCTGCAGCGGATATGTCTA+AGG 0.435369 7.2:-13509467 MS.gene020365:CDS
TTGGATTGTGTCCAAAAGAA+AGG 0.438258 7.2:+13509875 None:intergenic
GCAGGTTACCCTGCAGGTAT+TGG 0.440207 7.2:-13508818 MS.gene020365:CDS
CGGCTGCAATGACTTACTAT+TGG 0.441204 7.2:-13509549 MS.gene020365:CDS
GCAGTACAGTTCCAGGCTAC+TGG 0.441752 7.2:-13509177 MS.gene020365:CDS
ACAATACCACGAAGCCGATT+CGG 0.443506 7.2:+13509032 None:intergenic
TTCACAGCAATCATCATAGC+TGG 0.444289 7.2:-13510159 MS.gene020365:CDS
CGCATATACTACCATGTTGA+TGG 0.445018 7.2:-13510072 MS.gene020365:CDS
AAGAATTCACTGCTTCTCTT+GGG 0.449285 7.2:-13508791 MS.gene020365:CDS
TTCACTGCTTCTCTTGGGTG+TGG 0.449659 7.2:-13508786 MS.gene020365:CDS
TGAACCGCAGCAAGCGGAGA+AGG 0.452627 7.2:-13509422 MS.gene020365:CDS
CATATCCGCTGCAGCCTGCT+TGG 0.454475 7.2:+13509474 None:intergenic
TACATTGGGTGGCAATGTAC+CGG 0.455366 7.2:+13510038 None:intergenic
TGTGGAACAGTTGAACCAAC+AGG 0.457025 7.2:+13509616 None:intergenic
GAAGAAGAAGCCGGAACCAA+TGG 0.458999 7.2:-13508683 MS.gene020365:CDS
GCTGCAGTCTTTGCCATGCA+GGG 0.460059 7.2:-13509727 MS.gene020365:CDS
CGACATGGATTACATCTACT+TGG 0.462628 7.2:-13509361 MS.gene020365:CDS
GGGAAGCTTGGGGCTATGGT+TGG 0.471822 7.2:-13508893 MS.gene020365:CDS
TCATCCGCATCTGGGAAGCT+TGG 0.473815 7.2:-13508905 MS.gene020365:CDS
GTCAACGGGGTTGCTTTCGT+TGG 0.476531 7.2:-13510006 MS.gene020365:CDS
GTGGCTCTCATTGACAAGAT+AGG 0.481482 7.2:-13509148 MS.gene020365:CDS
GGCAAAGACTGCAGCAATGA+AGG 0.485618 7.2:+13509735 None:intergenic
GTTGACAGCAGCTGATACAT+TGG 0.487108 7.2:+13510023 None:intergenic
ATATGATCACTGGACTCATA+AGG 0.489144 7.2:-13509059 MS.gene020365:CDS
CTTGTACTTGGCACAGAACA+AGG 0.492231 7.2:-13508858 MS.gene020365:CDS
TACTTGGTACAACAAGTACT+TGG 0.493210 7.2:-13509345 MS.gene020365:CDS
TGGTATGACACTGATGATAA+TGG 0.493897 7.2:-13509920 MS.gene020365:CDS
CAATAGTAAGTCATTGCAGC+CGG 0.496792 7.2:+13509550 None:intergenic
GGATCACCGAATCGGCTTCG+TGG 0.502695 7.2:-13509038 MS.gene020365:CDS
TGCGGATGATATTCCATGGC+AGG 0.504397 7.2:+13508919 None:intergenic
TTCTTGGTGCCTGAGGCAAA+TGG 0.508113 7.2:-13508737 MS.gene020365:CDS
TTCTTCACACCAATACCTGC+AGG 0.508992 7.2:+13508809 None:intergenic
AAATCTTTGGAGGAGATGTC+AGG 0.510193 7.2:-13508713 MS.gene020365:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.510860 7.2:+13509247 None:intergenic
CACAAGCAGACTACATTTGG+AGG 0.510888 7.2:-13509597 MS.gene020365:CDS
GCGGAGAAGGCAAAATCATA+TGG 0.514417 7.2:-13509409 MS.gene020365:CDS
ATATCTTCAGTGCAATTGGT+TGG 0.515374 7.2:-13509276 MS.gene020365:CDS
TTGGGTAGGAAGAAAGTGTA+TGG 0.515516 7.2:-13509940 MS.gene020365:CDS
AACCATGAATGCACTTGAAG+AGG 0.516262 7.2:-13509239 MS.gene020365:CDS
AGATTGCTCCAACTCTCCAT+TGG 0.516518 7.2:+13508667 None:intergenic
TTGCCATTCCATATGATCAC+TGG 0.516816 7.2:-13509069 MS.gene020365:CDS
AAAAGAAAGGCCGGAACCAA+TGG 0.520061 7.2:+13509888 None:intergenic
TCCCTTGTTACCAAGTTGCT+CGG 0.520352 7.2:-13510096 MS.gene020365:CDS
AGGTTTAAAATCCAATTGAT+GGG 0.523949 7.2:-13509124 MS.gene020365:CDS
CAGGTAGAACGGAATCTAGC+AGG 0.525861 7.2:+13508938 None:intergenic
GACAAGAGTAAAGCAGATGC+AGG 0.526182 7.2:-13508836 MS.gene020365:CDS
CTCCAAATGTAGTCTGCTTG+TGG 0.526433 7.2:+13509598 None:intergenic
ATAATGGTAATCTGCTCCAT+TGG 0.531504 7.2:-13509904 MS.gene020365:CDS
GCCACTGTAAACCAGTAGCC+TGG 0.533275 7.2:+13509166 None:intergenic
GCAGATGCAGGTTACCCTGC+AGG 0.533852 7.2:-13508824 MS.gene020365:CDS
GTTGATGGTGCTGCGAAGCC+CGG 0.534866 7.2:-13510057 MS.gene020365:CDS
ATCATATGGCTTGTTGTCAA+AGG 0.535067 7.2:-13509395 MS.gene020365:CDS
TGTGATGGTAGGAGCACTCC+CGG 0.536043 7.2:-13509569 MS.gene020365:CDS
GGACACCAAGCAGGCTGCAG+CGG 0.537285 7.2:-13509479 MS.gene020365:CDS
TTGACAGCAGCTGATACATT+GGG 0.537719 7.2:+13510024 None:intergenic
GGATATGTCTAAGGTTCTGC+AGG 0.537946 7.2:-13509458 MS.gene020365:CDS
CTGCAGTCTTTGCCATGCAG+GGG 0.540874 7.2:-13509726 MS.gene020365:CDS
CTTTCGTTGGTACACTTACA+GGG 0.541506 7.2:-13509993 MS.gene020365:CDS
ACATTATAGTAGCCGAAAGC+GGG 0.542524 7.2:+13509788 None:intergenic
ACTCATAAGGATCACCGAAT+CGG 0.544423 7.2:-13509046 MS.gene020365:CDS
AGATTCCGTTCTACCTGCCA+TGG 0.544647 7.2:-13508932 MS.gene020365:CDS
CTGCAATGACTTACTATTGG+CGG 0.544763 7.2:-13509546 MS.gene020365:CDS
AATTAAACTCAATCTAAACA+TGG 0.547537 7.2:+13508621 None:intergenic
ACATTGGGTGGCAATGTACC+GGG 0.549146 7.2:+13510039 None:intergenic
AGCCGGAACCAATGGAGAGT+TGG 0.550591 7.2:-13508675 MS.gene020365:CDS
GCATTCATGGTTTGTGCAGG+TGG 0.550880 7.2:+13509250 None:intergenic
AGTTGCTAAGGACACCAAGC+AGG 0.552452 7.2:-13509488 MS.gene020365:CDS
GTCCGAGCAACTTGGTAACA+AGG 0.554046 7.2:+13510094 None:intergenic
AATGTATCAGCTGCTGTCAA+CGG 0.554506 7.2:-13510021 MS.gene020365:CDS
CCCGAAATTTGCAAAGAAGA+AGG 0.555344 7.2:+13509000 None:intergenic
ATATTCCATGGCAGGTAGAA+CGG 0.558469 7.2:+13508927 None:intergenic
CGAAGCTGAACCGCAGCAAG+CGG 0.563066 7.2:-13509428 MS.gene020365:CDS
TGGAGGATAATTGTGATGGT+AGG 0.563401 7.2:-13509580 MS.gene020365:CDS
GGCAAATGGAAAATCTTTGG+AGG 0.563885 7.2:-13508723 MS.gene020365:CDS
AGCAATCATCATAGCTGGGA+TGG 0.564203 7.2:-13510154 MS.gene020365:CDS
AGCCCCAAGCTTCCCAGATG+CGG 0.578715 7.2:+13508901 None:intergenic
AATAGTAAGTCATTGCAGCC+GGG 0.578730 7.2:+13509551 None:intergenic
ATGGAATATCATCCGCATCT+GGG 0.579157 7.2:-13508913 MS.gene020365:CDS
TTACACTGCTCTAGTTGCTA+AGG 0.580370 7.2:-13509500 MS.gene020365:CDS
GGTGAAAACGAAGAAGAAGC+CGG 0.582672 7.2:-13508692 MS.gene020365:CDS
TTTGCCTTCTCCGCTTGCTG+CGG 0.582683 7.2:+13509418 None:intergenic
CAGTCAAAATCTATTCCAGA+AGG 0.585368 7.2:-13509299 MS.gene020365:CDS
CTCTCATTGACAAGATAGGA+AGG 0.588657 7.2:-13509144 MS.gene020365:CDS
ACAGGGTCAACTGCGTAAGA+TGG 0.589165 7.2:+13509634 None:intergenic
ATTGTGTCCAAAAGAAAGGC+CGG 0.592471 7.2:+13509879 None:intergenic
AATTTCTGCTGGCACAACAA+AGG 0.595387 7.2:+13508964 None:intergenic
GACATTATAGTAGCCGAAAG+CGG 0.598882 7.2:+13509787 None:intergenic
CAAAATTCCAAACCCCTGCA+TGG 0.608713 7.2:+13509714 None:intergenic
GCAATCATCATAGCTGGGAT+GGG 0.611817 7.2:-13510153 MS.gene020365:CDS
CATTTGGAGGATAATTGTGA+TGG 0.611828 7.2:-13509584 MS.gene020365:CDS
ACACAATCCAAAATCTGTCA+TGG 0.612120 7.2:-13509863 MS.gene020365:CDS
CAGATGCGGATGATATTCCA+TGG 0.613085 7.2:+13508915 None:intergenic
TCACAGCAATCATCATAGCT+GGG 0.613106 7.2:-13510158 MS.gene020365:CDS
ATTAAACTCAATCTAAACAT+GGG 0.614155 7.2:+13508622 None:intergenic
AGTCCAGTGATCATATGGAA+TGG 0.614289 7.2:+13509066 None:intergenic
TCTTACGCAGTTGACCCTGT+TGG 0.614981 7.2:-13509631 MS.gene020365:CDS
ATCCGCATCTGGGAAGCTTG+GGG 0.619152 7.2:-13508903 MS.gene020365:CDS
AGATTGAAAAGTAATGGCAA+AGG 0.619832 7.2:-13510235 None:intergenic
GTATATGCGTCCGAGCAACT+TGG 0.620992 7.2:+13510086 None:intergenic
AAGGAGTTCATGAGTCGACA+TGG 0.626280 7.2:-13509376 MS.gene020365:CDS
TTCTGCTGGCACAACAAAGG+TGG 0.627572 7.2:+13508967 None:intergenic
TCCAGGCTACTGGTTTACAG+TGG 0.634566 7.2:-13509167 MS.gene020365:CDS
TCCGAGCAACTTGGTAACAA+GGG 0.641166 7.2:+13510095 None:intergenic
GGCTTGGTGATAAGTTGGGT+AGG 0.643521 7.2:-13509954 MS.gene020365:CDS
GCTTCGCAGCACCATCAACA+TGG 0.643769 7.2:+13510061 None:intergenic
TTGATGTGGCGAAAACGCAA+TGG 0.645511 7.2:-13510188 MS.gene020365:CDS
ACAGCAGCTGATACATTGGG+TGG 0.646579 7.2:+13510027 None:intergenic
TATTCTAATAAGAAGACTCG+TGG 0.670227 7.2:-13509760 MS.gene020365:CDS
GGTGCTAAATGCACTTGATG+TGG 0.678447 7.2:-13510202 MS.gene020365:CDS
GTGGAACAGTTGAACCAACA+GGG 0.679599 7.2:+13509617 None:intergenic
GTAAGATGGTGAATCAAACA+TGG 0.686625 7.2:+13509648 None:intergenic
TCTTCACACCAATACCTGCA+GGG 0.695753 7.2:+13508810 None:intergenic
TGTATCAGCTGCTGTCAACG+GGG 0.711594 7.2:-13510019 MS.gene020365:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGTTTAAAATCCAATTGA+TGG - chr7.2:13509731-13509750 MS.gene020365:CDS 25.0%
!! AGGTTTAAAATCCAATTGAT+GGG - chr7.2:13509732-13509751 MS.gene020365:CDS 25.0%
ACCTTCTTCTTTGCAAATTT+CGG - chr7.2:13509855-13509874 MS.gene020365:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG + chr7.2:13509746-13509765 None:intergenic 30.0%
TATTCTAATAAGAAGACTCG+TGG - chr7.2:13509096-13509115 MS.gene020365:CDS 30.0%
AAGAATTCACTGCTTCTCTT+GGG - chr7.2:13510065-13510084 MS.gene020365:CDS 35.0%
AAGGATATCTTCAGTGCAAT+TGG - chr7.2:13509576-13509595 MS.gene020365:CDS 35.0%
ACACAATCCAAAATCTGTCA+TGG - chr7.2:13508993-13509012 MS.gene020365:CDS 35.0%
ATAATGGTAATCTGCTCCAT+TGG - chr7.2:13508952-13508971 MS.gene020365:CDS 35.0%
ATATCTTCAGTGCAATTGGT+TGG - chr7.2:13509580-13509599 MS.gene020365:CDS 35.0%
ATATGATCACTGGACTCATA+AGG - chr7.2:13509797-13509816 MS.gene020365:CDS 35.0%
CAGTCAAAATCTATTCCAGA+AGG - chr7.2:13509557-13509576 MS.gene020365:CDS 35.0%
CATTTGGAGGATAATTGTGA+TGG - chr7.2:13509272-13509291 MS.gene020365:CDS 35.0%
CCTTCTTCTTTGCAAATTTC+GGG - chr7.2:13509856-13509875 MS.gene020365:CDS 35.0%
GTAAGATGGTGAATCAAACA+TGG + chr7.2:13509211-13509230 None:intergenic 35.0%
TACTTGGTACAACAAGTACT+TGG - chr7.2:13509511-13509530 MS.gene020365:CDS 35.0%
TGAGGCAAATGGAAAATCTT+TGG - chr7.2:13510130-13510149 MS.gene020365:CDS 35.0%
TGGTATGACACTGATGATAA+TGG - chr7.2:13508936-13508955 MS.gene020365:CDS 35.0%
TTATGAGTCCAGTGATCATA+TGG + chr7.2:13509798-13509817 None:intergenic 35.0%
TTGGATTGTGTCCAAAAGAA+AGG + chr7.2:13508984-13509003 None:intergenic 35.0%
! AAAGATTTTCCATTTGCCTC+AGG + chr7.2:13510131-13510150 None:intergenic 35.0%
! GGGATTCCTTTTTACTTTCT+TGG - chr7.2:13510103-13510122 MS.gene020365:CDS 35.0%
! TTGGGTGTGGTTAACATTTT+GGG - chr7.2:13510083-13510102 MS.gene020365:CDS 35.0%
!! ATCATATGGCTTGTTGTCAA+AGG - chr7.2:13509461-13509480 MS.gene020365:CDS 35.0%
AACCATGAATGCACTTGAAG+AGG - chr7.2:13509617-13509636 MS.gene020365:CDS 40.0%
AACCTCTTCAAGTGCATTCA+TGG + chr7.2:13509622-13509641 None:intergenic 40.0%
AATAGTAAGTCATTGCAGCC+GGG + chr7.2:13509308-13509327 None:intergenic 40.0%
AATGTATCAGCTGCTGTCAA+CGG - chr7.2:13508835-13508854 MS.gene020365:CDS 40.0%
AATTTCTGCTGGCACAACAA+AGG + chr7.2:13509895-13509914 None:intergenic 40.0%
ACAACAAAGGTGGTAGCATT+AGG + chr7.2:13509882-13509901 None:intergenic 40.0%
ACATTATAGTAGCCGAAAGC+GGG + chr7.2:13509071-13509090 None:intergenic 40.0%
ACTCATAAGGATCACCGAAT+CGG - chr7.2:13509810-13509829 MS.gene020365:CDS 40.0%
AGTCCAGTGATCATATGGAA+TGG + chr7.2:13509793-13509812 None:intergenic 40.0%
ATATTCCATGGCAGGTAGAA+CGG + chr7.2:13509932-13509951 None:intergenic 40.0%
ATGGAATATCATCCGCATCT+GGG - chr7.2:13509943-13509962 MS.gene020365:CDS 40.0%
ATTGTGTCCAAAAGAAAGGC+CGG + chr7.2:13508980-13508999 None:intergenic 40.0%
CAATAGTAAGTCATTGCAGC+CGG + chr7.2:13509309-13509328 None:intergenic 40.0%
CAGGCACCAAGAAAGTAAAA+AGG + chr7.2:13510112-13510131 None:intergenic 40.0%
CATAGTTTCAGCTGCATTCA+AGG - chr7.2:13509185-13509204 MS.gene020365:CDS 40.0%
CCCGAAATTTGCAAAGAAGA+AGG + chr7.2:13509859-13509878 None:intergenic 40.0%
CGCATATACTACCATGTTGA+TGG - chr7.2:13508784-13508803 MS.gene020365:CDS 40.0%
CTAGCAGGAAAAATTTCTGC+TGG + chr7.2:13509906-13509925 None:intergenic 40.0%
CTCTCATTGACAAGATAGGA+AGG - chr7.2:13509712-13509731 MS.gene020365:CDS 40.0%
CTGCAATGACTTACTATTGG+CGG - chr7.2:13509310-13509329 MS.gene020365:CDS 40.0%
CTTTCGTTGGTACACTTACA+GGG - chr7.2:13508863-13508882 MS.gene020365:CDS 40.0%
GAAGAATTCACTGCTTCTCT+TGG - chr7.2:13510064-13510083 MS.gene020365:CDS 40.0%
GACATTATAGTAGCCGAAAG+CGG + chr7.2:13509072-13509091 None:intergenic 40.0%
GGCAAATGGAAAATCTTTGG+AGG - chr7.2:13510133-13510152 MS.gene020365:CDS 40.0%
TACCAAACCCAAGCCAAAAA+CGG + chr7.2:13509035-13509054 None:intergenic 40.0%
TCACAGCAATCATCATAGCT+GGG - chr7.2:13508698-13508717 MS.gene020365:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG - chr7.2:13509276-13509295 MS.gene020365:CDS 40.0%
TTACACTGCTCTAGTTGCTA+AGG - chr7.2:13509356-13509375 MS.gene020365:CDS 40.0%
TTCACAGCAATCATCATAGC+TGG - chr7.2:13508697-13508716 MS.gene020365:CDS 40.0%
TTCCACAAGCAGACTACATT+TGG - chr7.2:13509256-13509275 MS.gene020365:CDS 40.0%
TTGACAGCAGCTGATACATT+GGG + chr7.2:13508835-13508854 None:intergenic 40.0%
TTGCACTGAAGATATCCTTC+TGG + chr7.2:13509575-13509594 None:intergenic 40.0%
TTGCCATTCCATATGATCAC+TGG - chr7.2:13509787-13509806 MS.gene020365:CDS 40.0%
! AAATCTTTGGAGGAGATGTC+AGG - chr7.2:13510143-13510162 MS.gene020365:CDS 40.0%
! AGAGTTGCCATGACAGATTT+TGG + chr7.2:13509003-13509022 None:intergenic 40.0%
! CGACATGGATTACATCTACT+TGG - chr7.2:13509495-13509514 MS.gene020365:CDS 40.0%
! CTCTTTGCTTCTTCCGTTTT+TGG - chr7.2:13509019-13509038 MS.gene020365:CDS 40.0%
! CTTGGGTGTGGTTAACATTT+TGG - chr7.2:13510082-13510101 MS.gene020365:CDS 40.0%
! TGCATTTGGGTTCTTGTACT+TGG - chr7.2:13509986-13510005 MS.gene020365:CDS 40.0%
! TTGGGTAGGAAGAAAGTGTA+TGG - chr7.2:13508916-13508935 MS.gene020365:CDS 40.0%
!! ATGCAGGGGTTTGGAATTTT+GGG - chr7.2:13509144-13509163 MS.gene020365:CDS 40.0%
!!! TTTTACTTTCTTGGTGCCTG+AGG - chr7.2:13510112-13510131 MS.gene020365:CDS 40.0%
!!! TTTTGGCTTGGGTTTGGTAT+TGG - chr7.2:13509036-13509055 MS.gene020365:CDS 40.0%
AAAAGAAAGGCCGGAACCAA+TGG + chr7.2:13508971-13508990 None:intergenic 45.0%
AAGGAGTTCATGAGTCGACA+TGG - chr7.2:13509480-13509499 MS.gene020365:CDS 45.0%
ACAATACCACGAAGCCGATT+CGG + chr7.2:13509827-13509846 None:intergenic 45.0%
AGATTGCTCCAACTCTCCAT+TGG + chr7.2:13510192-13510211 None:intergenic 45.0%
AGCAATCATCATAGCTGGGA+TGG - chr7.2:13508702-13508721 MS.gene020365:CDS 45.0%
ATGTATCAGCTGCTGTCAAC+GGG - chr7.2:13508836-13508855 MS.gene020365:CDS 45.0%
CAAAATTCCAAACCCCTGCA+TGG + chr7.2:13509145-13509164 None:intergenic 45.0%
CACAAGCAGACTACATTTGG+AGG - chr7.2:13509259-13509278 MS.gene020365:CDS 45.0%
CAGATGCGGATGATATTCCA+TGG + chr7.2:13509944-13509963 None:intergenic 45.0%
CATGGAATATCATCCGCATC+TGG - chr7.2:13509942-13509961 MS.gene020365:CDS 45.0%
CGGCTGCAATGACTTACTAT+TGG - chr7.2:13509307-13509326 MS.gene020365:CDS 45.0%
CTCCAAATGTAGTCTGCTTG+TGG + chr7.2:13509261-13509280 None:intergenic 45.0%
CTTGTACTTGGCACAGAACA+AGG - chr7.2:13509998-13510017 MS.gene020365:CDS 45.0%
GACAAGAGTAAAGCAGATGC+AGG - chr7.2:13510020-13510039 MS.gene020365:CDS 45.0%
GCAATCATCATAGCTGGGAT+GGG - chr7.2:13508703-13508722 MS.gene020365:CDS 45.0%
GCGGAGAAGGCAAAATCATA+TGG - chr7.2:13509447-13509466 MS.gene020365:CDS 45.0%
GCTTTCGTTGGTACACTTAC+AGG - chr7.2:13508862-13508881 MS.gene020365:CDS 45.0%
GGTGAAAACGAAGAAGAAGC+CGG - chr7.2:13510164-13510183 MS.gene020365:CDS 45.0%
GGTGCTAAATGCACTTGATG+TGG - chr7.2:13508654-13508673 MS.gene020365:CDS 45.0%
GTGGAACAGTTGAACCAACA+GGG + chr7.2:13509242-13509261 None:intergenic 45.0%
GTGGCTCTCATTGACAAGAT+AGG - chr7.2:13509708-13509727 MS.gene020365:CDS 45.0%
GTTGACAGCAGCTGATACAT+TGG + chr7.2:13508836-13508855 None:intergenic 45.0%
TACATTGGGTGGCAATGTAC+CGG + chr7.2:13508821-13508840 None:intergenic 45.0%
TCCCTTGTTACCAAGTTGCT+CGG - chr7.2:13508760-13508779 MS.gene020365:CDS 45.0%
TCTTCACACCAATACCTGCA+GGG + chr7.2:13510049-13510068 None:intergenic 45.0%
TGTGGAACAGTTGAACCAAC+AGG + chr7.2:13509243-13509262 None:intergenic 45.0%
TTCTTCACACCAATACCTGC+AGG + chr7.2:13510050-13510069 None:intergenic 45.0%
TTGATGTGGCGAAAACGCAA+TGG - chr7.2:13508668-13508687 MS.gene020365:CDS 45.0%
! AGTGCATTCATGGTTTGTGC+AGG + chr7.2:13509612-13509631 None:intergenic 45.0%
! CTTACAGGGCAGCTTTTCTT+TGG - chr7.2:13508877-13508896 MS.gene020365:CDS 45.0%
! GGATATGTCTAAGGTTCTGC+AGG - chr7.2:13509398-13509417 MS.gene020365:CDS 45.0%
! TCCGAGCAACTTGGTAACAA+GGG + chr7.2:13508764-13508783 None:intergenic 45.0%
!! ATTGGTTCCGGCCTTTCTTT+TGG - chr7.2:13508970-13508989 MS.gene020365:CDS 45.0%
!! CATGCAGGGGTTTGGAATTT+TGG - chr7.2:13509143-13509162 MS.gene020365:CDS 45.0%
!! GTAATCTGCTCCATTGGTTC+CGG - chr7.2:13508958-13508977 MS.gene020365:CDS 45.0%
!!! GCTTCTTCCGTTTTTGGCTT+GGG - chr7.2:13509025-13509044 MS.gene020365:CDS 45.0%
!!! TGCTTCTTCCGTTTTTGGCT+TGG - chr7.2:13509024-13509043 MS.gene020365:CDS 45.0%
!!! TTCCGTTTTTGGCTTGGGTT+TGG - chr7.2:13509030-13509049 MS.gene020365:CDS 45.0%
ACAGCAGCTGATACATTGGG+TGG + chr7.2:13508832-13508851 None:intergenic 50.0%
ACAGGGTCAACTGCGTAAGA+TGG + chr7.2:13509225-13509244 None:intergenic 50.0%
ACATTGGGTGGCAATGTACC+GGG + chr7.2:13508820-13508839 None:intergenic 50.0%
AGATTCCGTTCTACCTGCCA+TGG - chr7.2:13509924-13509943 MS.gene020365:CDS 50.0%
AGTTGCTAAGGACACCAAGC+AGG - chr7.2:13509368-13509387 MS.gene020365:CDS 50.0%
CAGGTAGAACGGAATCTAGC+AGG + chr7.2:13509921-13509940 None:intergenic 50.0%
GAAGAAGAAGCCGGAACCAA+TGG - chr7.2:13510173-13510192 MS.gene020365:CDS 50.0%
GCAGTGTAACGAGCAGTTTC+TGG + chr7.2:13509345-13509364 None:intergenic 50.0%
GCTCTATGCAGTACAGTTCC+AGG - chr7.2:13509672-13509691 MS.gene020365:CDS 50.0%
GGCAAAGACTGCAGCAATGA+AGG + chr7.2:13509124-13509143 None:intergenic 50.0%
GTATATGCGTCCGAGCAACT+TGG + chr7.2:13508773-13508792 None:intergenic 50.0%
TCTTACGCAGTTGACCCTGT+TGG - chr7.2:13509225-13509244 MS.gene020365:CDS 50.0%
TGCGGATGATATTCCATGGC+AGG + chr7.2:13509940-13509959 None:intergenic 50.0%
TGTATCAGCTGCTGTCAACG+GGG - chr7.2:13508837-13508856 MS.gene020365:CDS 50.0%
TTCACTGCTTCTCTTGGGTG+TGG - chr7.2:13510070-13510089 MS.gene020365:CDS 50.0%
TTCTGCTGGCACAACAAAGG+TGG + chr7.2:13509892-13509911 None:intergenic 50.0%
! GCATTCATGGTTTGTGCAGG+TGG + chr7.2:13509609-13509628 None:intergenic 50.0%
! GGGCTATGGTTGGTGCATTT+GGG - chr7.2:13509973-13509992 MS.gene020365:CDS 50.0%
! GTCCGAGCAACTTGGTAACA+AGG + chr7.2:13508765-13508784 None:intergenic 50.0%
! TGGCTTGGGTTTGGTATTGG+TGG - chr7.2:13509039-13509058 MS.gene020365:CDS 50.0%
!! CAGCTTTTCTTTGGCTGGCT+TGG - chr7.2:13508886-13508905 MS.gene020365:CDS 50.0%
!! CAGGGGTTTGGAATTTTGGG+AGG - chr7.2:13509147-13509166 MS.gene020365:CDS 50.0%
!! CTCCAACTCTCCATTGGTTC+CGG + chr7.2:13510186-13510205 None:intergenic 50.0%
!! GGCTGGCTTGGTGATAAGTT+GGG - chr7.2:13508898-13508917 MS.gene020365:CDS 50.0%
!! GGCTTGGTGATAAGTTGGGT+AGG - chr7.2:13508902-13508921 MS.gene020365:CDS 50.0%
!! GGGTTTGGAATTTTGGGAGG+TGG - chr7.2:13509150-13509169 MS.gene020365:CDS 50.0%
!! TCCAGGCTACTGGTTTACAG+TGG - chr7.2:13509689-13509708 MS.gene020365:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGT+TGG - chr7.2:13508897-13508916 MS.gene020365:CDS 50.0%
!! TTCTTGGTGCCTGAGGCAAA+TGG - chr7.2:13510119-13510138 MS.gene020365:CDS 50.0%
AGCCGGAACCAATGGAGAGT+TGG - chr7.2:13510181-13510200 MS.gene020365:CDS 55.0%
ATCCGCATCTGGGAAGCTTG+GGG - chr7.2:13509953-13509972 MS.gene020365:CDS 55.0%
ATCTGGGAAGCTTGGGGCTA+TGG - chr7.2:13509959-13509978 MS.gene020365:CDS 55.0%
CATCCGCATCTGGGAAGCTT+GGG - chr7.2:13509952-13509971 MS.gene020365:CDS 55.0%
CTGCAGTCTTTGCCATGCAG+GGG - chr7.2:13509130-13509149 MS.gene020365:CDS 55.0%
GCAGGTTACCCTGCAGGTAT+TGG - chr7.2:13510038-13510057 MS.gene020365:CDS 55.0%
GCAGTACAGTTCCAGGCTAC+TGG - chr7.2:13509679-13509698 MS.gene020365:CDS 55.0%
GCCACTGTAAACCAGTAGCC+TGG + chr7.2:13509693-13509712 None:intergenic 55.0%
GCTGCAGTCTTTGCCATGCA+GGG - chr7.2:13509129-13509148 MS.gene020365:CDS 55.0%
GCTTCGCAGCACCATCAACA+TGG + chr7.2:13508798-13508817 None:intergenic 55.0%
GGCTGCAGCGGATATGTCTA+AGG - chr7.2:13509389-13509408 MS.gene020365:CDS 55.0%
GTCTTTGCCATGCAGGGGTT+TGG - chr7.2:13509135-13509154 MS.gene020365:CDS 55.0%
TCATCCGCATCTGGGAAGCT+TGG - chr7.2:13509951-13509970 MS.gene020365:CDS 55.0%
TGCTGCAGTCTTTGCCATGC+AGG - chr7.2:13509128-13509147 MS.gene020365:CDS 55.0%
TGGTGGAGACTACCCGCTTT+CGG - chr7.2:13509056-13509075 MS.gene020365:CDS 55.0%
! CAGGGCAGCTTTTCTTTGGC+TGG - chr7.2:13508881-13508900 MS.gene020365:CDS 55.0%
! GGGGCTATGGTTGGTGCATT+TGG - chr7.2:13509972-13509991 MS.gene020365:CDS 55.0%
! GTCAACGGGGTTGCTTTCGT+TGG - chr7.2:13508850-13508869 MS.gene020365:CDS 55.0%
! TTTGCCTTCTCCGCTTGCTG+CGG + chr7.2:13509441-13509460 None:intergenic 55.0%
!! TGTGATGGTAGGAGCACTCC+CGG - chr7.2:13509287-13509306 MS.gene020365:CDS 55.0%
AGCCCCAAGCTTCCCAGATG+CGG + chr7.2:13509958-13509977 None:intergenic 60.0%
CATATCCGCTGCAGCCTGCT+TGG + chr7.2:13509385-13509404 None:intergenic 60.0%
CGAAGCTGAACCGCAGCAAG+CGG - chr7.2:13509428-13509447 MS.gene020365:CDS 60.0%
GCAGATGCAGGTTACCCTGC+AGG - chr7.2:13510032-13510051 MS.gene020365:CDS 60.0%
GGGAAGCTTGGGGCTATGGT+TGG - chr7.2:13509963-13509982 MS.gene020365:CDS 60.0%
TGAACCGCAGCAAGCGGAGA+AGG - chr7.2:13509434-13509453 MS.gene020365:CDS 60.0%
! GGATCACCGAATCGGCTTCG+TGG - chr7.2:13509818-13509837 MS.gene020365:CDS 60.0%
!! GTTGATGGTGCTGCGAAGCC+CGG - chr7.2:13508799-13508818 MS.gene020365:CDS 60.0%
GGACACCAAGCAGGCTGCAG+CGG - chr7.2:13509377-13509396 MS.gene020365:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 13508634 13510244 13508634 ID=MS.gene020365
chr7.2 mRNA 13508634 13510244 13508634 ID=MS.gene020365.t1;Parent=MS.gene020365
chr7.2 exon 13508634 13510244 13508634 ID=MS.gene020365.t1.exon1;Parent=MS.gene020365.t1
chr7.2 CDS 13508634 13510244 13508634 ID=cds.MS.gene020365.t1;Parent=MS.gene020365.t1
Gene Sequence

>MS.gene020365

ATGGCAAAGGATCAAATTCAGGTGCTAAATGCACTTGATGTGGCGAAAACGCAATGGTATCACTTCACAGCAATCATCATAGCTGGGATGGGCTTCTTTACTGATGCATATGATCTGTTCTGCATATCCCTTGTTACCAAGTTGCTCGGACGCATATACTACCATGTTGATGGTGCTGCGAAGCCCGGTACATTGCCACCCAATGTATCAGCTGCTGTCAACGGGGTTGCTTTCGTTGGTACACTTACAGGGCAGCTTTTCTTTGGCTGGCTTGGTGATAAGTTGGGTAGGAAGAAAGTGTATGGTATGACACTGATGATAATGGTAATCTGCTCCATTGGTTCCGGCCTTTCTTTTGGACACAATCCAAAATCTGTCATGGCAACTCTTTGCTTCTTCCGTTTTTGGCTTGGGTTTGGTATTGGTGGAGACTACCCGCTTTCGGCTACTATAATGTCAGAGTATTCTAATAAGAAGACTCGTGGTGCCTTCATTGCTGCAGTCTTTGCCATGCAGGGGTTTGGAATTTTGGGAGGTGGTATATTTGCAATCATAGTTTCAGCTGCATTCAAGGCCATGTTTGATTCACCATCTTACGCAGTTGACCCTGTTGGTTCAACTGTTCCACAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCGGCTGCAATGACTTACTATTGGCGGATGAAGATGCCAGAAACTGCTCGTTACACTGCTCTAGTTGCTAAGGACACCAAGCAGGCTGCAGCGGATATGTCTAAGGTTCTGCAGGTTGAAATCGAAGCTGAACCGCAGCAAGCGGAGAAGGCAAAATCATATGGCTTGTTGTCAAAGGAGTTCATGAGTCGACATGGATTACATCTACTTGGTACAACAAGTACTTGGTTCTTGCTTGATATAGCATTTTACAGTCAAAATCTATTCCAGAAGGATATCTTCAGTGCAATTGGTTGGATACCACCTGCACAAACCATGAATGCACTTGAAGAGGTTTACAGAATCGCAAGAGCTCAAACACTTATTGCTCTATGCAGTACAGTTCCAGGCTACTGGTTTACAGTGGCTCTCATTGACAAGATAGGAAGGTTTAAAATCCAATTGATGGGATTCTTCTTTATGACTGTCTTCATGTTTGCTCTTGCCATTCCATATGATCACTGGACTCATAAGGATCACCGAATCGGCTTCGTGGTATTGTACTCATTGACCTTCTTCTTTGCAAATTTCGGGCCTAATGCTACCACCTTTGTTGTGCCAGCAGAAATTTTTCCTGCTAGATTCCGTTCTACCTGCCATGGAATATCATCCGCATCTGGGAAGCTTGGGGCTATGGTTGGTGCATTTGGGTTCTTGTACTTGGCACAGAACAAGGACAAGAGTAAAGCAGATGCAGGTTACCCTGCAGGTATTGGTGTGAAGAATTCACTGCTTCTCTTGGGTGTGGTTAACATTTTGGGATTCCTTTTTACTTTCTTGGTGCCTGAGGCAAATGGAAAATCTTTGGAGGAGATGTCAGGTGAAAACGAAGAAGAAGCCGGAACCAATGGAGAGTTGGAGCAATCTCATTCTCATAACAGAACTGTTTCCCATGTTTAG
Protein sequence

>MS.gene020365.t1

MAKDQIQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFVGTLTGQLFFGWLGDKLGRKKVYGMTLMIMVICSIGSGLSFGHNPKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAIIVSAAFKAMFDSPSYAVDPVGSTVPQADYIWRIIVMVGALPAAMTYYWRMKMPETARYTALVAKDTKQAAADMSKVLQVEIEAEPQQAEKAKSYGLLSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYRIARAQTLIALCSTVPGYWFTVALIDKIGRFKIQLMGFFFMTVFMFALAIPYDHWTHKDHRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQNKDKSKADAGYPAGIGVKNSLLLLGVVNILGFLFTFLVPEANGKSLEEMSGENEEEAGTNGELEQSHSHNRTVSHV